Psyllid ID: psy10474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQNP
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHccccEEEEEEcHHHHHcccEEEEEEccEEEEEccHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccHHHHHHHHHHHHHHHcccEEEEEcccHHHHHcccEEEEEEccEEEEEEcHHHHHHHccHHHHHHHHccc
Coil and Loop (DISEMBL)
mfrlfgsaldnESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQNP
Flexible Loop (DISEMBL)
mfrlfgsaldnesEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQNP
Low Complexity Region (SEG)
MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQNP
Disordered region (IsUnstruct)
***************LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM*****
Disordered Region (DISOPRED)
MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ**
Disordered Region (DISEMBL)
MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQNP
Disordered Region (DISPRO)
MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
P23174	1281	Multidrug resistance prot	no	N/A	0.898	0.055	0.619	6e-19
Q7W9N7	623	Lipid A export ATP-bindin	yes	N/A	0.898	0.113	0.661	8e-19
Q7WH20	623	Lipid A export ATP-bindin	yes	N/A	0.898	0.113	0.661	8e-19
Q7VWD8	623	Lipid A export ATP-bindin	yes	N/A	0.898	0.113	0.661	8e-19
P21440	1276	Multidrug resistance prot	yes	N/A	0.898	0.055	0.605	1e-18
P21447	1276	Multidrug resistance prot	no	N/A	0.898	0.055	0.605	2e-18
P21448	1276	Multidrug resistance prot	no	N/A	0.898	0.055	0.605	2e-18
Q08201	1278	Multidrug resistance prot	no	N/A	0.898	0.055	0.605	2e-18
P43245	1277	Multidrug resistance prot	no	N/A	0.860	0.053	0.632	2e-18
P08183	1280	Multidrug resistance prot	yes	N/A	0.898	0.055	0.605	2e-18

>sp|P23174|MDR3_CRIGR Multidrug resistance protein 3 OS=Cricetulus griseus GN=ABCB4 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1205 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1264

Query: 67   KGHYWTLMNQQ 77
            KG Y++++N Q
Sbjct: 1265 KGIYFSMVNIQ 1275

Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte.
Cricetulus griseus (taxid: 10029)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4

>sp|Q7W9N7|MSBA_BORPA Lipid A export ATP-binding/permease protein MsbA OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=msbA PE=3 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 54/71 (76%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALDNESE+ VQA+LE   +GRT L+IAHRLSTVQNAD I+VL AG+IVE G H  LLA 
Sbjct: 549 SALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAA 608

Query: 67  KGHYWTLMNQQ 77
            G Y +L N Q
Sbjct: 609 NGLYASLYNMQ 619

Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) (taxid: 257311)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q7WH20|MSBA_BORBR Lipid A export ATP-binding/permease protein MsbA OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=msbA PE=3 SV=2

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 54/71 (76%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALDNESE+ VQA+LE   +GRT L+IAHRLSTVQNAD I+VL AG+IVE G H  LLA 
Sbjct: 549 SALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAA 608

Query: 67  KGHYWTLMNQQ 77
            G Y +L N Q
Sbjct: 609 NGLYASLYNMQ 619

Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (taxid: 257310)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q7VWD8|MSBA_BORPE Lipid A export ATP-binding/permease protein MsbA OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=msbA PE=3 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 54/71 (76%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALDNESE+ VQA+LE   +GRT L+IAHRLSTVQNAD I+VL AG+IVE G H  LLA 
Sbjct: 549 SALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAA 608

Query: 67  KGHYWTLMNQQ 77
            G Y +L N Q
Sbjct: 609 NGLYASLYNMQ 619

Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|P21440|MDR3_MOUSE Multidrug resistance protein 3 OS=Mus musculus GN=Abcb4 PE=2 SV=2

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 59/71 (83%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV++ G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQ 1259

Query: 67   KGHYWTLMNQQ 77
            KG Y++++N Q
Sbjct: 1260 KGIYFSMVNIQ 1270

Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P21447|MDR1A_MOUSE Multidrug resistance protein 1A OS=Mus musculus GN=Abcb1a PE=1 SV=3

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 59/71 (83%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259

Query: 67   KGHYWTLMNQQ 77
            KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270

Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P21448|MDR1_CRIGR Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 59/71 (83%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1201 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1260

Query: 67   KGHYWTLMNQQ 77
            KG Y+++++ Q
Sbjct: 1261 KGIYFSMVSVQ 1271

Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells.

Cricetulus griseus (taxid: 10029)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q08201|MDR3_RAT Multidrug resistance protein 3 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+  G++ E G H+ LLA+
Sbjct: 1202 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIDNGKVKEHGTHQQLLAQ 1261

Query: 67   KGHYWTLMNQQ 77
            KG Y++++N Q
Sbjct: 1262 KGIYFSMVNIQ 1272

Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P43245|MDR1_RAT Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q GQ+ E G H+ LLA+
Sbjct: 1203 SALDTESEKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQ 1262

Query: 67   KGHYWTLM 74
            KG Y++++
Sbjct: 1263 KGIYFSMV 1270

Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P08183|MDR1_HUMAN Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV Q G++ E G H+ LLA+
Sbjct: 1204 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQ 1263

Query: 67   KGHYWTLMNQQ 77
            KG Y+++++ Q
Sbjct: 1264 KGIYFSMVSVQ 1274

Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
91086531	599	PREDICTED: similar to CG1824 CG1824-PA [	0.898	0.118	0.704	9e-21
193632092	676	PREDICTED: ATP-binding cassette sub-fami	0.898	0.105	0.704	1e-20
301605636	1262	PREDICTED: multidrug resistance protein	0.911	0.057	0.652	3e-20
357618526	639	hypothetical protein KGM_16343 [Danaus p	0.911	0.112	0.680	1e-19
383858748	694	PREDICTED: ATP-binding cassette sub-fami	0.898	0.102	0.661	1e-19
238504792	1307	ABC multidrug transporter, putative [Asp	0.924	0.055	0.616	2e-19
391867163	1307	multidrug/pheromone exporter, ABC superf	0.924	0.055	0.616	2e-19
169780982	1307	ABC multidrug transporter Mdr1 [Aspergil	0.924	0.055	0.616	2e-19
350427088	695	PREDICTED: ATP-binding cassette sub-fami	0.911	0.103	0.625	3e-19
340718242	693	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.898	0.102	0.633	5e-19

>gi|91086531|ref|XP_972133.1| PREDICTED: similar to CG1824 CG1824-PA [Tribolium castaneum] gi|270010345|gb|EFA06793.1| hypothetical protein TcasGA2_TC009730 [Tribolium castaneum]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 59/71 (83%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESEK+VQ ALE+A KGRTV++IAHRLSTVQNAD+IVVL  G IVEMG H+ L  K
Sbjct: 523 SALDTESEKVVQNALENAKKGRTVVVIAHRLSTVQNADIIVVLNKGVIVEMGTHEELTRK 582

Query: 67  KGHYWTLMNQQ 77
           +G+YW+L  QQ
Sbjct: 583 RGYYWSLTYQQ 593

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193632092|ref|XP_001942699.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Acyrthosiphon pisum]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/71 (70%), Positives = 59/71 (83%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE  VQ+ALES   G+TVL+IAHRLSTV+NAD+IVVL  G+IVE+G+H +LL K
Sbjct: 598 SALDTESEMHVQSALESVANGKTVLVIAHRLSTVKNADVIVVLNKGEIVEVGDHNTLLKK 657

Query: 67  KGHYWTLMNQQ 77
           KG YW LMNQQ
Sbjct: 658 KGFYWNLMNQQ 668

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301605636|ref|XP_002932444.1| PREDICTED: multidrug resistance protein 3-like [Xenopus (Silurana) tropicalis]

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 62/72 (86%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALDNESEK+VQ AL+ A +GRT ++IAHRLSTVQNAD+IVV++ G+I+E+GNH+ LLAK
Sbjct: 1189 SALDNESEKIVQQALDQARQGRTCILIAHRLSTVQNADVIVVMKNGRIIELGNHQQLLAK 1248

Query: 67   KGHYWTLMNQQN 78
            +G Y+ L+N Q 
Sbjct: 1249 RGTYFDLVNAQT 1260

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357618526|gb|EHJ71471.1| hypothetical protein KGM_16343 [Danaus plexippus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 57/72 (79%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD  SE++VQAALE A  GRTVL+IAHRLSTV++AD+IVVL  GQIVEMG H  L   
Sbjct: 558 SALDGASEQIVQAALERASVGRTVLVIAHRLSTVRSADVIVVLNKGQIVEMGTHDQLKKL 617

Query: 67  KGHYWTLMNQQN 78
           KGHYW L+ QQ+
Sbjct: 618 KGHYWNLIKQQD 629

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858748|ref|XP_003704861.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Megachile rotundata]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 58/71 (81%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE++VQ ALE+   GRTVL+IAHRLST++NAD+IVVLQ G I EMG H  L+ K
Sbjct: 619 SALDYESERIVQKALENVVHGRTVLVIAHRLSTIKNADMIVVLQRGAIAEMGTHADLIKK 678

Query: 67  KGHYWTLMNQQ 77
           KG Y+TL+N+Q
Sbjct: 679 KGLYYTLVNEQ 689

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|238504792|ref|XP_002383625.1| ABC multidrug transporter, putative [Aspergillus flavus NRRL3357] gi|220689739|gb|EED46089.1| ABC multidrug transporter, putative [Aspergillus flavus NRRL3357]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD+ESEK+VQAAL++A +GRT + +AHRLST+Q ADLI VL  G++VE G H+ LL K
Sbjct: 1229 SALDSESEKVVQAALDAAARGRTTIAVAHRLSTIQRADLIYVLDQGEVVESGTHRELLRK 1288

Query: 67   KGHYWTLMNQQNP 79
            KG Y+ L++ QNP
Sbjct: 1289 KGRYYELVHLQNP 1301

Source: Aspergillus flavus NRRL3357

Species: Aspergillus flavus

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|391867163|gb|EIT76413.1| multidrug/pheromone exporter, ABC superfamily [Aspergillus oryzae 3.042]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD+ESEK+VQAAL++A +GRT + +AHRLST+Q ADLI VL  G++VE G H+ LL K
Sbjct: 1229 SALDSESEKVVQAALDAAARGRTTIAVAHRLSTIQRADLIYVLDQGEVVESGTHRELLRK 1288

Query: 67   KGHYWTLMNQQNP 79
            KG Y+ L++ QNP
Sbjct: 1289 KGRYYELVHLQNP 1301

Source: Aspergillus oryzae 3.042

Species: Aspergillus oryzae

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|169780982|ref|XP_001824955.1| ABC multidrug transporter Mdr1 [Aspergillus oryzae RIB40] gi|83773695|dbj|BAE63822.1| unnamed protein product [Aspergillus oryzae RIB40]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD+ESEK+VQAAL++A +GRT + +AHRLST+Q ADLI VL  G++VE G H+ LL K
Sbjct: 1229 SALDSESEKVVQAALDAAARGRTTIAVAHRLSTIQRADLIYVLDQGEVVESGTHRELLRK 1288

Query: 67   KGHYWTLMNQQNP 79
            KG Y+ L++ QNP
Sbjct: 1289 KGRYYELVHLQNP 1301

Source: Aspergillus oryzae RIB40

Species: Aspergillus oryzae

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|350427088|ref|XP_003494648.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Bombus impatiens]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 60/72 (83%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE++VQ AL++  +GRTV++IAHRLST++NAD+IVVLQ G I EMG H  L+ K
Sbjct: 620 SALDYESERIVQKALDNVTQGRTVVVIAHRLSTIKNADIIVVLQRGVITEMGTHTELIKK 679

Query: 67  KGHYWTLMNQQN 78
           KG Y+TL+N+Q+
Sbjct: 680 KGLYYTLVNEQD 691

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718242|ref|XP_003397580.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family B member 8, mitochondrial-like [Bombus terrestris]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 59/71 (83%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE++VQ AL++  +GRTV++IAHRLST++NAD+IVVLQ G I EMG H  L+ K
Sbjct: 618 SALDYESERIVQKALDNVTQGRTVVVIAHRLSTIKNADIIVVLQRGVITEMGTHTELIKK 677

Query: 67  KGHYWTLMNQQ 77
           KG Y+TL+N+Q
Sbjct: 678 KGLYYTLVNEQ 688

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
UNIPROTKB|F1NTA4	1245	LOC420606 "Uncharacterized pro	0.873	0.055	0.623	4.2e-18
UNIPROTKB|B1N4V2	322	EHI_001290 "P-glycoprotein-2,	0.898	0.220	0.619	5.8e-18
UNIPROTKB|B1N522	302	EHI_075420 "P-glycoprotein 5,	0.898	0.235	0.605	7.5e-18
UNIPROTKB|F1NKZ1	1253	F1NKZ1 "Uncharacterized protei	0.911	0.057	0.597	1.8e-17
UNIPROTKB|F1NZT7	1254	F1NZT7 "Uncharacterized protei	0.911	0.057	0.597	1.8e-17
UNIPROTKB|F1NKW0	1288	ABCB1 "Uncharacterized protein	0.911	0.055	0.597	1.9e-17
UNIPROTKB|E1BS63	1290	ABCB1 "Uncharacterized protein	0.911	0.055	0.597	1.9e-17
UNIPROTKB|F1SC09	1259	ABCB5 "Uncharacterized protein	0.911	0.057	0.638	3e-17
UNIPROTKB|F1LXA8	1238	Abcb1a "Protein Abcb1a" [Rattu	0.898	0.057	0.619	6.2e-17
RGD|619951	1272	Abcb1a "ATP-binding cassette,	0.898	0.055	0.619	6.4e-17

UNIPROTKB|F1NTA4 LOC420606 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL++A +GRT ++IAHRL+T+QNAD+I V+Q G++VE G H  LLAK
Sbjct:  1172 SALDTESEKIVQKALDNARQGRTCIVIAHRLTTIQNADIIAVIQNGRVVEQGTHSQLLAK 1231

Query:    67 KGHYWTLMN 75
             +GHY+ L+N
Sbjct:  1232 EGHYYALVN 1240

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|B1N4V2 EHI_001290 "P-glycoprotein-2, putative" [Entamoeba histolytica (taxid:5759)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 44/71 (61%), Positives = 54/71 (76%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD+ESEK+VQ AL+ A KGRT ++IAHRLST+QNAD I V+  G+I E G H+ LL  
Sbjct:   247 SALDSESEKIVQDALDKAAKGRTTIVIAHRLSTIQNADQICVIMRGRIAERGTHQELLDL 306

Query:    67 KGHYWTLMNQQ 77
             KG Y+TL  QQ
Sbjct:   307 KGFYYTLAMQQ 317

GO:0005886 "plasma membrane" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

UNIPROTKB|B1N522 EHI_075420 "P-glycoprotein 5, putative" [Entamoeba histolytica (taxid:5759)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/71 (60%), Positives = 54/71 (76%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD +SEK+VQ AL+ A KGRT ++IAHRLST+QNAD I V+  G+IVE G H+ L+  
Sbjct:   227 SALDTQSEKIVQEALDKASKGRTAIIIAHRLSTIQNADQICVIMRGKIVEQGTHQELMDL 286

Query:    67 KGHYWTLMNQQ 77
             KG Y+TL  QQ
Sbjct:   287 KGFYYTLAMQQ 297

GO:0005886 "plasma membrane" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

UNIPROTKB|F1NKZ1 F1NKZ1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 43/72 (59%), Positives = 59/72 (81%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNAD I V+Q G+++E G H+ LLA+
Sbjct:  1177 SALDTESEKIVQEALDKAREGRTCIVIAHRLSTIQNADKIAVIQNGKVIEQGTHQQLLAE 1236

Query:    67 KGHYWTLMNQQN 78
             KG Y++L+N Q+
Sbjct:  1237 KGFYYSLVNVQS 1248

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NZT7 F1NZT7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 43/72 (59%), Positives = 59/72 (81%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNAD I V+Q G+++E G H+ LLA+
Sbjct:  1178 SALDTESEKIVQEALDKAREGRTCIVIAHRLSTIQNADKIAVIQNGKVIEQGTHQQLLAE 1237

Query:    67 KGHYWTLMNQQN 78
             KG Y++L+N Q+
Sbjct:  1238 KGFYYSLVNVQS 1249

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NKW0 ABCB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 43/72 (59%), Positives = 59/72 (81%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNAD I V+Q G+++E G H+ LLA+
Sbjct:  1212 SALDTESEKIVQEALDKAREGRTCIVIAHRLSTIQNADKIAVIQNGKVIEQGTHQQLLAE 1271

Query:    67 KGHYWTLMNQQN 78
             KG Y++L+N Q+
Sbjct:  1272 KGFYYSLVNVQS 1283

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BS63 ABCB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 43/72 (59%), Positives = 59/72 (81%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNAD I V+Q G+++E G H+ LLA+
Sbjct:  1214 SALDTESEKIVQEALDKAREGRTCIVIAHRLSTIQNADKIAVIQNGKVIEQGTHQQLLAE 1273

Query:    67 KGHYWTLMNQQN 78
             KG Y++L+N Q+
Sbjct:  1274 KGFYYSLVNVQS 1285

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SC09 ABCB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 225 (84.3 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 46/72 (63%), Positives = 56/72 (77%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALDNESEK+VQ AL+ A KGRT LM+AHRLST+QNADLIVVL  G+I E G H+ LL  
Sbjct:  1186 SALDNESEKVVQHALDKASKGRTCLMVAHRLSTIQNADLIVVLHNGKIKEQGTHQELLKN 1245

Query:    67 KGHYWTLMNQQN 78
             +  Y+ L+N Q+
Sbjct:  1246 RDIYFKLVNAQS 1257

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0015562 "efflux transmembrane transporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

UNIPROTKB|F1LXA8 Abcb1a "Protein Abcb1a" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 6.2e-17, P = 6.2e-17
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q GQ+ E G H+ LLA+
Sbjct:  1162 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQ 1221

Query:    67 KGHYWTLMNQQ 77
             KG Y+++++ Q
Sbjct:  1222 KGIYFSMVSVQ 1232

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

RGD|619951 Abcb1a "ATP-binding cassette, sub-family B (MDR/TAP), member 1A" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 6.4e-17, P = 6.4e-17
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query:     7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q GQ+ E G H+ LLA+
Sbjct:  1196 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQ 1255

Query:    67 KGHYWTLMNQQ 77
             KG Y+++++ Q
Sbjct:  1256 KGIYFSMVSVQ 1266

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISO

GO:0000139 "Golgi membrane" evidence=IBA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006855 "drug transmembrane transport" evidence=IDA

GO:0007595 "lactation" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009986 "cell surface" evidence=ISO

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0015893 "drug transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IBA

GO:0016324 "apical plasma membrane" evidence=IBA

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042623 "ATPase activity, coupled" evidence=ISO

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0046581 "intercellular canaliculus" evidence=ISO;IBA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0072089 "stem cell proliferation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0A4U4	MSBA_ALHEH	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1205	yes	N/A
Q142P6	MSBA_BURXL	3, ., 6, ., 3, ., -	0.6406	0.8101	0.1072	yes	N/A
Q9C7F2	AB14B_ARATH	No assigned EC number	0.5416	0.8987	0.0569	yes	N/A
Q3KJ31	MSBA_PSEPF	3, ., 6, ., 3, ., -	0.5970	0.8481	0.1116	yes	N/A
Q63VX7	MSBA_BURPS	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1191	yes	N/A
Q1LQD3	MSBA_RALME	3, ., 6, ., 3, ., -	0.6119	0.8481	0.1127	yes	N/A
Q87VF3	MSBA_PSESM	3, ., 6, ., 3, ., -	0.5970	0.8481	0.1116	yes	N/A
Q1QX69	MSBA_CHRSD	3, ., 6, ., 3, ., -	0.5352	0.8987	0.1226	yes	N/A
P21440	MDR3_MOUSE	3, ., 6, ., 3, ., 4, 4	0.6056	0.8987	0.0556	yes	N/A
Q48P40	MSBA_PSE14	3, ., 6, ., 3, ., -	0.6119	0.8481	0.1116	yes	N/A
P08183	MDR1_HUMAN	3, ., 6, ., 3, ., 4, 4	0.6056	0.8987	0.0554	yes	N/A
Q21NS8	MSBA_SACD2	3, ., 6, ., 3, ., -	0.5774	0.8987	0.1211	yes	N/A
Q1GZI0	MSBA_METFK	3, ., 6, ., 3, ., -	0.5492	0.8987	0.1217	yes	N/A
Q3JUI6	MSBA_BURP1	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1191	yes	N/A
Q9HUG8	MSBA_PSEAE	3, ., 6, ., 3, ., -	0.5714	0.9240	0.1210	yes	N/A
Q2KYS6	MSBA_BORA1	3, ., 6, ., 3, ., -	0.6478	0.8987	0.1201	yes	N/A
Q2LVL0	MSBA_SYNAS	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1181	yes	N/A
Q62IG3	MSBA_BURMA	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1191	yes	N/A
Q8XXB6	MSBA_RALSO	3, ., 6, ., 3, ., -	0.6417	0.8481	0.1131	yes	N/A
Q6F9X0	MSBA_ACIAD	3, ., 6, ., 3, ., -	0.5555	0.8987	0.1236	yes	N/A
Q4ZZ16	MSBA_PSEU2	3, ., 6, ., 3, ., -	0.6268	0.8481	0.1116	yes	N/A
Q2SZW0	MSBA_BURTA	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1191	yes	N/A
Q7W9N7	MSBA_BORPA	3, ., 6, ., 3, ., -	0.6619	0.8987	0.1139	yes	N/A
Q7WH20	MSBA_BORBR	3, ., 6, ., 3, ., -	0.6619	0.8987	0.1139	yes	N/A
Q54W24	ABCB4_DICDI	No assigned EC number	0.6323	0.8607	0.0886	yes	N/A
Q9FNU2	AB25B_ORYSJ	No assigned EC number	0.5915	0.8987	0.1107	yes	N/A
Q4KJB2	MSBA_PSEF5	3, ., 6, ., 3, ., -	0.56	0.9240	0.1214	yes	N/A
Q5X498	MSBA_LEGPA	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1207	yes	N/A
Q5ZUH9	MSBA_LEGPH	3, ., 6, ., 3, ., -	0.5915	0.8987	0.1207	yes	N/A
Q7VWD8	MSBA_BORPE	3, ., 6, ., 3, ., -	0.6619	0.8987	0.1139	yes	N/A
Q483B6	MSBA1_COLP3	3, ., 6, ., 3, ., -	0.5633	0.8987	0.1179	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	6e-38
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-32
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-31
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-27
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	4e-27
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	5e-25
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-24
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-23
COG5265	497	COG5265, ATM1, ABC-type transport system involved	1e-23
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-23
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-23
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-23
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-21
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-19
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	3e-19
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	5e-19
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-18
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	4e-18
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-17
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	3e-17
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-16
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	3e-16
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	9e-15
COG4987	573	COG4987, CydC, ABC-type transport system involved	9e-14
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	3e-13
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-11
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	3e-10
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	4e-10
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	7e-10
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	6e-09
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	6e-09
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	7e-09
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	9e-09
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-08
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-08
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-07
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	2e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	8e-07
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	3e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-06
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-05
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-05
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	5e-05
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	7e-05
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	9e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-04
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	2e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-04
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-04
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-04
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	5e-04
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	0.001
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	0.002
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	0.002
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	0.002
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	0.002
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	0.003
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.004

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  125 bits (317), Expect = 6e-38
 Identities = 46/71 (64%), Positives = 55/71 (77%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESEKLVQ AL+ A KGRT ++IAHRLST++NADLI VLQ GQ+VE G H  L+A+
Sbjct: 168 SALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227

Query: 67  KGHYWTLMNQQ 77
           KG Y  L+  Q
Sbjct: 228 KGVYAKLVKAQ 238

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  111 bits (279), Expect = 3e-32
 Identities = 43/67 (64%), Positives = 51/67 (76%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+LVQAALE   K RT  +IAHRLST++NAD IVVL+ G+IVE G H+ LLA+
Sbjct: 167 SALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226

Query: 67  KGHYWTL 73
            G Y  L
Sbjct: 227 GGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  109 bits (275), Expect = 1e-31
 Identities = 39/71 (54%), Positives = 50/71 (70%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD  +E+ +QAAL    KGRT ++IAHRLST+ NAD I+VL+ G+IVE G H+ LLAK
Sbjct: 166 SALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225

Query: 67  KGHYWTLMNQQ 77
            G Y  +   Q
Sbjct: 226 GGLYAEMWKAQ 236

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  103 bits (258), Expect = 1e-27
 Identities = 45/72 (62%), Positives = 53/72 (73%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALDNESE+LVQAALE   +GRT L+IAHRLST++ AD IVV+  G+IVE G H  LLA+
Sbjct: 498 SALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557

Query: 67  KGHYWTLMNQQN 78
            G Y  L N Q 
Sbjct: 558 NGLYAQLHNMQF 569

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 97.7 bits (244), Expect = 4e-27
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           S +D E+EKL+Q ALE   KGRT ++IAHRLST++NAD I+VL  G+I+E G H  LLAK
Sbjct: 168 SNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227

Query: 67  KG 68
           KG
Sbjct: 228 KG 229

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 95.8 bits (239), Expect = 5e-25
 Identities = 37/72 (51%), Positives = 51/72 (70%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+E ++   L    +GRTV++IAHRLST+++AD I+VL  G+IVE G+H+ LLA+
Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697

Query: 67  KGHYWTLMNQQN 78
            G Y  L  QQ 
Sbjct: 698 GGLYARLYQQQE 709

Length = 709

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 95.1 bits (237), Expect = 1e-24
 Identities = 39/71 (54%), Positives = 50/71 (70%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K RT L+IAHRLST++ AD I+V++ G+IVE G H  LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 569 NGVYAQLHKMQ 579

Length = 582

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 92.1 bits (229), Expect = 1e-23
 Identities = 42/71 (59%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+LVQ ALE+  KGRT L+IAHRL+TV  AD IVV+  G+IV  G H  L+AK
Sbjct: 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 565 GGLYARLARLQ 575

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 91.6 bits (228), Expect = 1e-23
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD  +E+ +QAAL     GRT L+IAHRLST+ +AD I+VL  G+IVE G H+ LLA 
Sbjct: 428 SALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487

Query: 67  KGHY 70
            G Y
Sbjct: 488 GGLY 491

Length = 497

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 88.7 bits (220), Expect = 1e-23
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE  +   +   C GRTV++IAHRLSTV+NAD I+V++ G+IVE G+H  LLA+
Sbjct: 167 SALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 227 NGLYAYLYQLQ 237

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+E L+Q AL+   KGRT L+IAHRLST++NAD I+VL  G+IVE G H+ LLAK
Sbjct: 494 SALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 554 GGLYARLYQAQ 564

Length = 567

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 39/71 (54%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE L+   +   C+GRTV++IAHRLSTV+  D I+VL+ GQI E G H+ LLA 
Sbjct: 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681

Query: 67  KGHYWTLMNQQ 77
           +G Y  L  QQ
Sbjct: 682 QGLYARLWQQQ 692

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 85.0 bits (211), Expect = 3e-21
 Identities = 36/71 (50%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+E  V+AAL+   KGRT  +IAHRLSTV+NAD I+V   G++VE G+   L+A+
Sbjct: 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559

Query: 67  KGHYWTLMNQQ 77
            G +  L+  Q
Sbjct: 560 GGRFAALLRAQ 570

Length = 588

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 32/71 (45%), Positives = 46/71 (64%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           + LD E+E+++  AL+   K +TVL+I HRL    +AD IVVL  G++VE G H+ L  K
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544

Query: 67  KGHYWTLMNQQ 77
           +G Y  L+ QQ
Sbjct: 545 QGLYANLLKQQ 555

Length = 559

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E E+L+Q +       RTVL+IAHRLSTV+ AD I+VL+ G +VEMG HK L+  
Sbjct: 646 SALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703

Query: 67  KGHYWTL 73
           +G Y  L
Sbjct: 704 QGCYKHL 710

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 75.5 bits (187), Expect = 5e-19
 Identities = 26/47 (55%), Positives = 37/47 (78%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53
           SALD E+E L+  AL +  KG+TV++IAHRLST+++AD I+VL  G+
Sbjct: 125 SALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 76.9 bits (190), Expect = 2e-18
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALDN ++ +V  +LE     R V  IAHRLST++NAD I VL AG++V+ G +  L+A+
Sbjct: 617 SALDNRTQAIVSESLERLKVTRIV--IAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674

Query: 67  KGHYWTLMNQQ 77
           +G +  L  +Q
Sbjct: 675 EGLFAQLARRQ 685

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 74.1 bits (183), Expect = 4e-18
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59
           +++D E++ L+Q  +  A K  TVL IAHRL T+ ++D I+VL  G++VE  +
Sbjct: 168 ASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+EK++   L    +G T +++AHRLST+++ D I+VL+ G++V+ G H+ L A 
Sbjct: 644 SALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701

Query: 67  KGHY 70
            G Y
Sbjct: 702 GGAY 705

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query: 9   LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
           LD E+E+ +   L    + +TVLMI HRL+ ++  D I V+  GQI+E G H+ LLA++G
Sbjct: 506 LDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565

Query: 69  HYWTLMNQQ 77
            Y+ L  + 
Sbjct: 566 RYYQLKQRL 574

Length = 574

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 71.1 bits (174), Expect = 2e-16
 Identities = 31/68 (45%), Positives = 49/68 (72%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+E  V+ A+++  K RT  +IAHRLSTV+NADL++ L  G+++E G+ + L+ K
Sbjct: 500 SALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559

Query: 67  KGHYWTLM 74
            G ++ L+
Sbjct: 560 DGRFYKLL 567

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 71.3 bits (175), Expect = 3e-16
 Identities = 31/69 (44%), Positives = 46/69 (66%)

Query: 9   LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
           +D+ +E+ +Q AL +  +  T+++IAHRLST+  AD I+VL  GQ VE G H+ LLA +G
Sbjct: 507 IDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566

Query: 69  HYWTLMNQQ 77
            YW +   Q
Sbjct: 567 RYWQMYQLQ 575

Length = 592

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 66.8 bits (164), Expect = 9e-15
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 9   LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
           LD  SE+LV  AL +A + +T LM+ H+L  +   D I V+Q GQIV+ G++  L    G
Sbjct: 516 LDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGG 575

Query: 69  HYWTLMNQQN 78
            + TL+  + 
Sbjct: 576 LFATLLAHRQ 585

Length = 588

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 63.9 bits (156), Expect = 9e-14
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
             LD  +E+ V A L    +G+T+LM+ HRL  ++  D I+VL  G+I+E G H  LLA 
Sbjct: 503 EGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562

Query: 67  KGHYWTLM 74
            G Y  L 
Sbjct: 563 NGRYKRLY 570

Length = 573

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 30/48 (62%), Positives = 36/48 (75%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
           SALD ESE+ VQ AL    + RTVL+IAHRLSTV+ AD I+VL  G+I
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SA+D  +E  +   L    +GRTV++ AHRLS +  A  I+V+Q G I + GNH  L  +
Sbjct: 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539

Query: 67  KGHY 70
            G Y
Sbjct: 540 SGWY 543

Length = 569

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 20/48 (41%), Positives = 34/48 (70%)

Query: 28  RTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75
           +T++ +AHRLS  + +D I+VL  G+I+E G+H  LL + G Y +L++
Sbjct: 660 KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 26/70 (37%), Positives = 46/70 (65%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            +A+D  ++ L+Q  +    K  T+L+IAHRL+T+ + D I+VL AG++VE    ++LL+ 
Sbjct: 1403 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462

Query: 67   KGHYWTLMNQ 76
            +G  ++ M Q
Sbjct: 1463 EGSAFSKMVQ 1472

Length = 1622

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 49
           + LD E+E  V  AL +  +GRTVL++ HRL+    AD IVVL
Sbjct: 487 AHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 24/61 (39%), Positives = 43/61 (70%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           +++D  +E ++Q  + +A   RTV+ IAHR+ST+ +ADL++VL  G +VE    ++LLA+
Sbjct: 185 ASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244

Query: 67  K 67
           +
Sbjct: 245 E 245

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 22/67 (32%), Positives = 45/67 (67%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            +A+D E++ L+Q+ + +  +  TVL IAHRL+T+ +   ++VL  G++ E G   +LL +
Sbjct: 1450 AAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509

Query: 67   KGHYWTL 73
            +G ++++
Sbjct: 1510 RGIFYSM 1516

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 49.9 bits (120), Expect = 7e-09
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55
           SA+DN SE+  +  L+    G+T++++ HR S +   D I+V+  G+IV
Sbjct: 630 SAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 48.8 bits (117), Expect = 9e-09
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 7   SALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
           S LD E E+ +  A+ +    G T ++IAHR  T+ +AD I+VL+ G++
Sbjct: 125 SHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55
           SA+D  SE+ ++  L      +T+++I HR S +   D I+V+ +G+IV
Sbjct: 169 SAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 22/70 (31%), Positives = 43/70 (61%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            +++D  ++ L+Q  +    K  T+L+IAHRL+T+ + D I+VL +GQ++E  + + LL++
Sbjct: 1400 ASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459

Query: 67   KGHYWTLMNQ 76
                +  M  
Sbjct: 1460 DTSAFFRMVH 1469

Length = 1495

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58
           +++D  ++ L+Q  +       T+L IAHRL T+ + D I+V+ AG++ E  
Sbjct: 154 ASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 7   SALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
           S LD E E+ L  A      +G TV++I HR S +   D I+VLQ G+I   G    +LA
Sbjct: 483 SNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542

Query: 66  K 66
           K
Sbjct: 543 K 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 8    ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL 63
            ALD +    +QA + SA    TV+ IAHRL TV   D I+V+  G + EMG+ + L
Sbjct: 1480 ALDRQ----IQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPREL 1531

Length = 1560

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 7   SALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
           S LD+E E  + AA+ +A  +G TV++IAHR S + + D I+VLQ G+I   G  + +LA
Sbjct: 501 SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560

Query: 66  K 66
           K
Sbjct: 561 K 561

Length = 580

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 14/50 (28%), Positives = 30/50 (60%)

Query: 9   LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58
           LD  +E+ + + +    K +T++ I H L+ +++ D I+ L+ G+I+  G
Sbjct: 129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 15/45 (33%), Positives = 30/45 (66%)

Query: 26  KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
           K +T +++ H +S +   D+I+V+  G+I EMG+++ LL + G +
Sbjct: 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAF 855

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSL 63
           +ALD  ++  +   L+   +  G  VL I H L  V + AD +VV+  G+IVE G  + +
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242

Query: 64  LAKKGHYWT 72
           L+   H +T
Sbjct: 243 LSNPQHPYT 251

Length = 539

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 4/46 (8%)

Query: 7   SALDNESEKLVQAALESACKG---RTVLMIAHRLSTVQNADLIVVL 49
           S+LDN+SE LVQ  + +  KG   R  ++IAHRLST++ A+ I VL
Sbjct: 608 SSLDNKSEYLVQKTINN-LKGNENRITIIIAHRLSTIRYANTIFVL 652

Length = 1466

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
           SALD   +  +   L+   +  G T+L I H L  V   AD + V+ AG+IVE G
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 26  KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH--YWTLMN 75
           KG  +++I H L  V   AD + V+ AG+IVE G  + +     H     L+N
Sbjct: 203 KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLN 255

Length = 316

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 6   GSALDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQNA-DLIVVLQAGQ 53
            S LD  S + +   L E A +GRTV+++ H     + A D ++VL+ G+
Sbjct: 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 7   SALDNESEK-LVQAALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMG 58
           + LD + E  ++Q  L++    +TV +I H +  V + AD ++V+  G+I++ G
Sbjct: 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258

Length = 320

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 11/68 (16%)

Query: 7    SALDNESEKLVQAAL----ESACKGRTVLMIAHRLSTVQNADLIVVL----QAGQIVEM- 57
            S+LD+ SEKL++  +    + A   +T++ IAHR+++++ +D IVV     + G  V+  
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKA--DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAH 1444

Query: 58   GNHKSLLA 65
            G H+ LL+
Sbjct: 1445 GTHEELLS 1452

Length = 1466

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 7   SALDNES-----EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53
           SA+D        E  +   L      +T +++ H+L  + +AD IVVL  G+
Sbjct: 156 SAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 27  GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74
           G  +L I H L  V+  AD + V+Q G+IVE G  ++L A   H +T  
Sbjct: 208 GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256

Length = 534

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 27  GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59
           G T L I+H L+ V+  AD + V+  G+IVE G 
Sbjct: 480 GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513

Length = 539

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 7   SALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
           S LD +S   V   ++    KG+T++ I H L  + +AD I+V+  G+IV  G  +++L+
Sbjct: 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224

Length = 274

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 35.9 bits (84), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 12  ESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
           E+E+L +   E   +G TVL++ H +  V + AD + VL  G+++  G
Sbjct: 178 ETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 7   SALDNESEKLVQAALESACKGR--TVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
           SALD   +  +   L    K R  T L I+H L+ V++  D I V+  GQIVE+G
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224

Length = 252

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 34.3 bits (80), Expect = 0.002
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 7   SAL-DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55
           +AL   E E+L +       +G  V+ I+HRL  V   AD + VL+ G++V
Sbjct: 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 26  KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59
            G T L I+H LS V+  +D I V+  G+IVE+G 
Sbjct: 159 LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193

Length = 268

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 26  KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69
           +  T+LM+ H        AD +V L  G+I   G+ + LL+ K  
Sbjct: 179 RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223

Length = 231

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 27  GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55
           G T+L+I H +  V   AD IVVL  G+++
Sbjct: 200 GVTILLIEHDMKLVMGLADRIVVLNYGEVI 229

Length = 250

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
           SALD E+ + + A L    +  G T+++I H +  V+   D + V++ G++VE G  + +
Sbjct: 169 SALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228

Query: 64  LAK 66
            A 
Sbjct: 229 FAN 231

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 26  KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLLAKK 67
           + +T+++++H ++ V + AD ++V++ G IV   + K L   K
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.84
COG4987	573	CydC ABC-type transport system involved in cytochr	99.81
COG4988	559	CydD ABC-type transport system involved in cytochr	99.81
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.78
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.77
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.77
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.77
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.77
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.75
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.75
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.75
KOG0055|consensus	1228		99.75
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.74
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.74
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.74
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.74
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.73
PLN03232	1495	ABC transporter C family member; Provisional	99.73
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.73
COG1123	539	ATPase components of various ABC-type transport sy	99.73
PLN03130	1622	ABC transporter C family member; Provisional	99.73
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.72
KOG0055|consensus	1228		99.72
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.72
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.72
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.72
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.72
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.71
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.71
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.71
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.71
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.71
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.71
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.71
PTZ00243	1560	ABC transporter; Provisional	99.71
KOG0057|consensus	591		99.71
KOG0058|consensus	716		99.71
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.71
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.71
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.71
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.7
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.7
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.7
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.7
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.7
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.7
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.7
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.69
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.69
COG1123	539	ATPase components of various ABC-type transport sy	99.69
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.69
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.69
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.69
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.68
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.68
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.68
COG4172	534	ABC-type uncharacterized transport system, duplica	99.68
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.68
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.68
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.68
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.68
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.68
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.67
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.67
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.67
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.67
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.67
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.67
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.67
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.67
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.67
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.67
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.67
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.67
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.66
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.66
KOG0054|consensus	1381		99.66
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.66
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.66
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.66
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.66
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.66
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.66
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.66
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.66
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.66
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.66
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.66
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.65
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.65
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.65
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.65
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.65
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.65
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.65
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.65
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.65
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.65
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.65
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.65
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.65
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.65
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.65
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.65
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.65
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.65
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.65
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.65
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.64
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.64
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.64
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.64
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.64
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.64
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.64
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.64
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.64
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.64
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.64
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.63
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.63
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.63
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.63
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.63
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.63
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.63
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.63
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.63
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.63
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.63
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.63
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.63
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.63
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.63
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.63
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.63
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.63
KOG0056|consensus	790		99.62
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.62
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.62
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.62
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.62
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.62
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.62
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.62
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.62
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.62
COG4559	259	ABC-type hemin transport system, ATPase component	99.62
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.61
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.61
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.61
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.61
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.61
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.61
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.61
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.61
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.61
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.61
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.61
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.61
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.61
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.61
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.61
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.6
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.6
PRK10938	490	putative molybdenum transport ATP-binding protein	99.6
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.6
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.6
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.6
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.6
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.6
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.6
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.6
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.6
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.59
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.59
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.59
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.59
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.59
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.59
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.59
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.59
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.59
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.59
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.59
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.59
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.58
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.58
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.58
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.58
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.58
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.58
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.58
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.58
COG4172	534	ABC-type uncharacterized transport system, duplica	99.58
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.58
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.58
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.58
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.58
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.58
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.58
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.57
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.57
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.57
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.57
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.57
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.57
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.57
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.57
PLN03232	1495	ABC transporter C family member; Provisional	99.57
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.57
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.57
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.57
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.56
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.56
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.56
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.56
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.56
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.56
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.56
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.55
PLN03130	1622	ABC transporter C family member; Provisional	99.55
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.55
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.55
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.55
PRK10908	222	cell division protein FtsE; Provisional	99.55
cd03246	173	ABCC_Protease_Secretion This family represents the	99.55
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.55
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.55
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.55
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.55
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.54
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.54
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.54
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.54
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.54
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.54
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.54
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.54
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.53
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.53
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.53
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.53
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.52
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.52
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.52
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.52
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.52
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.52
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.52
PLN03211	659	ABC transporter G-25; Provisional	99.52
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.51
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.51
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.51
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.5
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.5
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.5
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.49
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.49
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.48
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.48
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.47
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.47
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.46
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.46
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.46
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.46
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.46
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.45
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.44
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.44
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.43
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.43
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.43
PRK11147	635	ABC transporter ATPase component; Reviewed	99.42
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.42
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.41
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.41
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.41
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.41
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.4
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.4
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.39
PRK10938	490	putative molybdenum transport ATP-binding protein	99.39
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.39
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.38
PLN03140	1470	ABC transporter G family member; Provisional	99.38
PLN03073	718	ABC transporter F family; Provisional	99.38
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.37
KOG0054|consensus	1381		99.37
PLN03073	718	ABC transporter F family; Provisional	99.37
PTZ00243	1560	ABC transporter; Provisional	99.36
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.36
KOG0059|consensus	885		99.36
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.36
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.36
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.36
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.36
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.35
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.35
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.34
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.34
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.34
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.33
PRK11147	635	ABC transporter ATPase component; Reviewed	99.33
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.33
PRK13409	590	putative ATPase RIL; Provisional	99.33
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.33
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.32
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.32
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.32
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.32
COG4181	228	Predicted ABC-type transport system involved in ly	99.31
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.31
KOG0061|consensus	613		99.31
PLN03140	1470	ABC transporter G family member; Provisional	99.31
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.3
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.3
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.29
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.29
PRK13409	590	putative ATPase RIL; Provisional	99.28
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.27
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.26
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.26
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.25
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.24
COG0488	530	Uup ATPase components of ABC transporters with dup	99.23
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.23
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.23
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.21
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.19
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.19
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.18
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.18
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.17
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.15
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.13
COG0488	530	Uup ATPase components of ABC transporters with dup	99.13
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.12
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.12
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.12
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.12
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.11
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.11
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.1
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.08
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.06
KOG0065|consensus	1391		99.05
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.05
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.03
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.01
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.0
PRK10869	553	recombination and repair protein; Provisional	98.97
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.93
KOG0062|consensus	582		98.92
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.92
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.91
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.87
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.85
PHA02562	562	46 endonuclease subunit; Provisional	98.82
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.78
PRK03918	880	chromosome segregation protein; Provisional	98.76
KOG0927|consensus	614		98.73
PRK02224	880	chromosome segregation protein; Provisional	98.64
PRK01156	895	chromosome segregation protein; Provisional	98.64
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.64
KOG0927|consensus	614		98.62
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.57
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.54
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.53
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.53
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.51
KOG0062|consensus	582		98.49
COG4178	604	ABC-type uncharacterized transport system, permeas	98.49
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.46
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.45
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.45
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.43
KOG2355|consensus	291		98.43
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.43
COG3910	233	Predicted ATPase [General function prediction only	98.41
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.4
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.39
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.33
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.27
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.22
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.22
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.17
PRK00064	361	recF recombination protein F; Reviewed	98.17
KOG0066|consensus	807		98.14
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.11
KOG0066|consensus	807		98.11
KOG0065|consensus	1391		98.06
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.93
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.93
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	97.86
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.76
KOG0060|consensus	659		97.68
PRK00409	782	recombination and DNA strand exchange inhibitor pr	97.65
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.63
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.53
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.51
TIGR00611	365	recf recF protein. All proteins in this family for	97.5
PF13175	415	AAA_15: AAA ATPase domain	97.45
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.45
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	97.42
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.41
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	97.37
PRK13891	852	conjugal transfer protein TrbE; Provisional	97.29
KOG0063|consensus	592		97.29
PRK13695	174	putative NTPase; Provisional	97.27
PRK14079	349	recF recombination protein F; Provisional	97.24
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.23
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.16
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.1
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	97.02
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.01
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	96.56
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	96.45
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.38
PF13166	712	AAA_13: AAA domain	96.22
KOG0064|consensus	728		96.13
PRK06067	234	flagellar accessory protein FlaH; Validated	96.06
COG4637	373	Predicted ATPase [General function prediction only	96.03
KOG0962|consensus	1294		95.49
cd01128	249	rho_factor Transcription termination factor rho is	95.25
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.16
PRK05399	854	DNA mismatch repair protein MutS; Provisional	94.52
KOG0964|consensus	1200		94.4
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	93.56
KOG0063|consensus	592		93.31
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	93.21
PF13514	1111	AAA_27: AAA domain	91.67
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	91.58
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	91.34
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	91.08
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	91.0
TIGR00929	785	VirB4_CagE type IV secretion/conjugal transfer ATP	90.66
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	90.21
PF12846	304	AAA_10: AAA-like domain	90.15
TIGR03783	829	Bac_Flav_CT_G Bacteroides conjugation system ATPas	89.95
KOG0996|consensus	1293		89.63
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	89.63
PRK09302	509	circadian clock protein KaiC; Reviewed	88.91
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	88.43
PRK14088	440	dnaA chromosomal replication initiation protein; P	87.67
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	87.09
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	86.56
TIGR02746	797	TraC-F-type type-IV secretion system protein TraC.	86.4
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	86.11
KOG0933|consensus	1174		85.87
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	85.82
COG4938	374	Uncharacterized conserved protein [Function unknow	85.47
PRK13721	844	conjugal transfer ATP-binding protein TraC; Provis	85.43
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	85.42
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	85.33
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	85.33
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	84.15
PRK07471	365	DNA polymerase III subunit delta'; Validated	83.72
PRK13853	789	type IV secretion system protein VirB4; Provisiona	83.7
PF02572	172	CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase	81.54
COG4717	984	Uncharacterized conserved protein [Function unknow	81.14

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=8.4e-21  Score=106.23  Aligned_cols=69  Identities=23%  Similarity=0.409  Sum_probs=62.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||||||.....+...+..++. |.|.++|||++.++.. +|||++|++|++++.|++.++..++.+
T Consensus       159 LFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~  229 (240)
T COG1126         159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS  229 (240)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence            58999999999999999999988765 9999999999999977 999999999999999999998876554

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=9.9e-20  Score=111.98  Aligned_cols=75  Identities=37%  Similarity=0.579  Sum_probs=69.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +|||||.+||+.+...+...+....+++|+|+|||++..++.+|+|++|++|++++.|++.++..+.+.++.+.+
T Consensus       497 lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q  571 (573)
T COG4987         497 LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ  571 (573)
T ss_pred             EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence            589999999999999999999988899999999999999999999999999999999999999887677766543

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=9.5e-20  Score=112.68  Aligned_cols=76  Identities=41%  Similarity=0.629  Sum_probs=71.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +|||||++||.+++..+.+.+.+..+++|++++||++..+..+|+|++|++|++++.|++.++..+.+.+..++++
T Consensus       479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~  554 (559)
T COG4988         479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ  554 (559)
T ss_pred             EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999998888888888765

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.78  E-value=5.6e-19  Score=112.68  Aligned_cols=76  Identities=47%  Similarity=0.689  Sum_probs=70.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +||||||+||+.+++.+.+.+.+...++|+|+|+|++..+..||++++|++|+++++|+..++....+.+..++++
T Consensus       632 lLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~  707 (709)
T COG2274         632 LLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ  707 (709)
T ss_pred             EEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhc
Confidence            6999999999999999999999998899999999999999999999999999999999999998887777777654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.77  E-value=8.4e-19  Score=100.47  Aligned_cols=71  Identities=27%  Similarity=0.424  Sum_probs=63.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +||||++||||.++..+++.+....+  ++|+||||||++++.. +|++.+|+.|+++..++|.+++.++.+-+
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F  231 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF  231 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence            58999999999999999988876643  9999999999999865 99999999999999999999988777633

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.77  E-value=9.3e-19  Score=102.49  Aligned_cols=73  Identities=27%  Similarity=0.398  Sum_probs=65.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL   73 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~   73 (79)
                      |-||||+|||...+.++.+++..+.+  +.++|+||||+..+.. ||+|.+|..|++++.|+..++..++.+-++.
T Consensus       176 IADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~  251 (316)
T COG0444         176 IADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTR  251 (316)
T ss_pred             EeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHH
Confidence            45999999999999999999988753  9999999999999866 9999999999999999999998888775543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.77  E-value=2.2e-18  Score=97.82  Aligned_cols=74  Identities=26%  Similarity=0.404  Sum_probs=64.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +|||||++|||.....+.+++..+..  +.|+++||||++.+.. ||+++++.+|+++..|++.++......+-..+
T Consensus       168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf  244 (263)
T COG1127         168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQF  244 (263)
T ss_pred             EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHH
Confidence            48999999999999999999988754  9999999999999966 99999999999999999999877555544443

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.77  E-value=2e-18  Score=108.47  Aligned_cols=76  Identities=36%  Similarity=0.500  Sum_probs=69.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +||||||+||+.+...+.+.+.+..+++|+|+|||+++.+..+|+++++++|++++.|++.++....+.+..++..
T Consensus       508 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~  583 (588)
T PRK11174        508 LLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH  583 (588)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHH
Confidence            6999999999999999999998887899999999999988889999999999999999999998877777777654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.75  E-value=4.5e-18  Score=106.61  Aligned_cols=76  Identities=54%  Similarity=0.744  Sum_probs=69.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      |||||||++|+.++..+.+.+....+++|+++|+|+++.+..+|+++++++|++++.|++.++....+.+..++..
T Consensus       488 ILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~  563 (567)
T COG1132         488 ILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA  563 (567)
T ss_pred             EEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence            6999999999999999999998777788999999999999889999999999999999999999887778877654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.75  E-value=3.7e-18  Score=97.44  Aligned_cols=66  Identities=24%  Similarity=0.443  Sum_probs=59.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      |||||||+||+..+..+.+.+..+..  ++|+|++||+++++.. +|++++|++|+++.+|++.++..+
T Consensus       161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            69999999999999999999988754  6899999999999976 999999999999999998887664

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.75  E-value=7.8e-18  Score=105.95  Aligned_cols=75  Identities=40%  Similarity=0.673  Sum_probs=68.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.+...+.+.+.....++|+|++||++..+..+|++++|++|++++.|++.++....+.+..++.
T Consensus       499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~  573 (592)
T PRK10790        499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQ  573 (592)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHH
Confidence            689999999999999999999888778999999999998888999999999999999999998877777777654

>KOG0055|consensus

Probab=99.75  E-value=7.8e-18  Score=110.90  Aligned_cols=75  Identities=51%  Similarity=0.751  Sum_probs=71.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+..+..+++.++...+|+|.|+|+|+++.+..+|+++++++|++++.|.+.++....+.+..+++
T Consensus       512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~  586 (1228)
T KOG0055|consen  512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVR  586 (1228)
T ss_pred             EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHH
Confidence            589999999999999999999999999999999999999988999999999999999999999987788888875

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.74  E-value=9.5e-18  Score=97.71  Aligned_cols=76  Identities=17%  Similarity=0.339  Sum_probs=66.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      ||||||++||+.+...+.+.+.+...++|+|+++|+++.+..||++++|++|++++.|++.++......+..++.+
T Consensus       161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~  236 (275)
T cd03289         161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP  236 (275)
T ss_pred             EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence            6899999999999999999998876789999999999888679999999999999999999988765555555543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.74  E-value=1.1e-17  Score=105.08  Aligned_cols=75  Identities=51%  Similarity=0.692  Sum_probs=67.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.+...+.+.+....+++|+|+|||+++.+..+|+|+++++|++++.|+++++.+..+.+..++.
T Consensus       503 ilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~  577 (582)
T PRK11176        503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHK  577 (582)
T ss_pred             EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHH
Confidence            689999999999999999998887778999999999998888999999999999999999998877666776654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.74  E-value=1.1e-17  Score=113.27  Aligned_cols=77  Identities=29%  Similarity=0.556  Sum_probs=70.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ   77 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~   77 (79)
                      |||||||+||+.+...+++.++...+++|+|+|+|+++.+..+|+|++|++|++++.|++.++.++.+.++.++++.
T Consensus      1444 iLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957      1444 VLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence            69999999999999999999998888999999999999999999999999999999999999987777787776543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.74  E-value=3.5e-18  Score=96.99  Aligned_cols=67  Identities=36%  Similarity=0.459  Sum_probs=60.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      |+|||||+||+..+..+.+++....+  +.|.|||+|++..+.. |||+++|++|.+++.++..++...+
T Consensus       164 IlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~  233 (252)
T COG1124         164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHP  233 (252)
T ss_pred             EecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCC
Confidence            68999999999999999999987764  7799999999999987 9999999999999999988876653

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=4.3e-18  Score=99.49  Aligned_cols=69  Identities=29%  Similarity=0.472  Sum_probs=61.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +.|||||||||.+...+..++.... + |.|+++|||.|+.+.. ||+|.+|++|++++.|+..++..++.+
T Consensus       164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~  235 (339)
T COG1135         164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH  235 (339)
T ss_pred             EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence            3699999999999999999888764 3 9999999999999977 999999999999999998888766544

>PLN03232 ABC transporter C family member; Provisional

Probab=99.73  E-value=1.7e-17  Score=112.31  Aligned_cols=76  Identities=28%  Similarity=0.532  Sum_probs=69.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccc-hHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG-HYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~-~~~~~~~~   76 (79)
                      |||||||+||+.++..+++.+++..+++|+|+|+|+++.+..+|+|++|++|++++.|++.++.++.+ .++.+++.
T Consensus      1394 ILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232       1394 VLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence            69999999999999999999998888999999999999998899999999999999999999987664 57766653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.73  E-value=8.8e-18  Score=98.68  Aligned_cols=71  Identities=25%  Similarity=0.367  Sum_probs=61.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +||||+|+|||--+..++.-+.++. . ++|++|||||++++.+ .+|+.+|++|+++..|+|.++..++.+-+
T Consensus       187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndY  260 (386)
T COG4175         187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY  260 (386)
T ss_pred             EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence            5899999999998888877665553 3 8999999999999977 99999999999999999999988777633

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.73  E-value=5.3e-18  Score=105.04  Aligned_cols=71  Identities=31%  Similarity=0.433  Sum_probs=64.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      |+||||++||+.++.++.+++..+.  .+.++|+|||++..+.. ||++++|++|++++.|+..+++.++.+-+
T Consensus       177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpY  250 (539)
T COG1123         177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPY  250 (539)
T ss_pred             EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcc
Confidence            5899999999999999999998875  39999999999999976 99999999999999999999988777643

>PLN03130 ABC transporter C family member; Provisional

Probab=99.73  E-value=2.2e-17  Score=112.25  Aligned_cols=76  Identities=30%  Similarity=0.519  Sum_probs=69.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~   76 (79)
                      |||||||+||+.+...+++.+++..+++|+|+|+|+++.+..||+|++|++|++++.|++.++.+. .+.++.+++.
T Consensus      1397 ILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~ 1473 (1622)
T PLN03130       1397 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQS 1473 (1622)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHH
Confidence            699999999999999999999988889999999999999989999999999999999999999875 4567776653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.72  E-value=8.1e-18  Score=96.77  Aligned_cols=65  Identities=29%  Similarity=0.404  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +||||||+||...+..+++++.+.. + +.|+|++.||++.+.+ ||+++.|++|+++..|.+.++..
T Consensus       161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            5899999999999999999998875 3 8999999999998876 99999999999999999988764

>KOG0055|consensus

Probab=99.72  E-value=2e-17  Score=109.04  Aligned_cols=77  Identities=55%  Similarity=0.821  Sum_probs=73.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ   77 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~   77 (79)
                      +|||+|||||.+..+.+++.++....++|.|+|+|+++.+..||.+.++++|++++.|++.++....+.++.+++..
T Consensus      1149 LLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1149 LLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred             eeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999888899888754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.72  E-value=3.3e-17  Score=103.00  Aligned_cols=75  Identities=37%  Similarity=0.637  Sum_probs=68.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      |||||||+||+.++..+.+.+....+++|+|+++|+++.+..+|+++++++|++++.|++.++....+.+..++.
T Consensus       498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~  572 (574)
T PRK11160        498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ  572 (574)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence            589999999999999999999888789999999999999888999999999999999999999887777776654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.72  E-value=3.3e-17  Score=104.67  Aligned_cols=76  Identities=51%  Similarity=0.756  Sum_probs=69.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +||||||+||+.++..+.+.+.....++|+|++||+++.+..+|++++|++|++++.|++.++....+.+..++..
T Consensus       616 ilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~  691 (694)
T TIGR01846       616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ  691 (694)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence            5899999999999999999998887789999999999998789999999999999999999998777777777653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.72  E-value=2.2e-17  Score=91.06  Aligned_cols=69  Identities=23%  Similarity=0.401  Sum_probs=62.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+|||.....+...++.+++ |+|.+++||.+.++.. ...|+++.+|.+.++|+|..+..++..
T Consensus       175 LFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S  245 (256)
T COG4598         175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS  245 (256)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCC
Confidence            58999999999999999999988865 9999999999999977 899999999999999999998765443

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.72  E-value=2.5e-17  Score=97.94  Aligned_cols=69  Identities=25%  Similarity=0.411  Sum_probs=61.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      |+||||++||+..+..+.+++..+.+  +.|+|+|||++..+.. +|++++|++|++++.|+..++..++.+
T Consensus       184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~  255 (330)
T PRK09473        184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSH  255 (330)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence            68999999999999999998887743  8899999999999865 999999999999999998888765544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=6.1e-18  Score=94.88  Aligned_cols=69  Identities=20%  Similarity=0.342  Sum_probs=64.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+|||.....+.+++.++.+..|+++|||.|..+.+ .|+..++..|++++.|+...+..++..
T Consensus       172 LmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~  241 (253)
T COG1117         172 LMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKH  241 (253)
T ss_pred             EecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccH
Confidence            589999999999999999999999899999999999999987 899999999999999999998876655

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.71  E-value=5.3e-17  Score=103.63  Aligned_cols=73  Identities=42%  Similarity=0.620  Sum_probs=65.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+...  ++|+|+|||+++.+..+|++++|++|++++.|++.++....+.+..++.
T Consensus       611 iLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~  683 (686)
T TIGR03797       611 LFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR  683 (686)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence            689999999999999999888765  5899999999999988999999999999999999998876666766654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=3.1e-17  Score=97.55  Aligned_cols=68  Identities=26%  Similarity=0.331  Sum_probs=60.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      ||||||++||+..+..+.+++.++..  +.|+|+|||++..+.. ||++++|++|++++.|+..++..++.
T Consensus       181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~  251 (330)
T PRK15093        181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPH  251 (330)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            68999999999999999999988653  8899999999999965 99999999999999999888765443

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.71  E-value=6e-17  Score=102.02  Aligned_cols=75  Identities=41%  Similarity=0.686  Sum_probs=67.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+.+..+++|+|+++|+++.+..+|+++++++|++.+.|+..++....+.+..++.
T Consensus       494 ilDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~  568 (585)
T TIGR01192       494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLR  568 (585)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHH
Confidence            689999999999999999999887779999999999999877999999999999999999998877777776654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=3.5e-17  Score=97.24  Aligned_cols=69  Identities=26%  Similarity=0.353  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      |+||||++||+..+..+.+++..+.  .+.|+|++||++..+.. +|++++|.+|++++.|+..++..++.+
T Consensus       176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~h  247 (326)
T PRK11022        176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRH  247 (326)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCC
Confidence            5899999999999999999988774  38899999999999865 999999999999999998887765443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=4.2e-17  Score=96.97  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=63.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +|||||++||+.+...+.+.+....+++|+|++||+++.+.. ||++++|++|++++.|.+.++...+..
T Consensus       248 LLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~  317 (329)
T PRK14257        248 LMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN  317 (329)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence            689999999999999999999888778999999999999977 999999999999999999998765554

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.71  E-value=3.2e-17  Score=96.69  Aligned_cols=65  Identities=22%  Similarity=0.406  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++.. +.|+|++||+++++.. ||++++|++|+++..|++.++..
T Consensus       161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            58999999999999999999988754 8999999999999976 99999999999999999887753

>PTZ00243 ABC transporter; Provisional

Probab=99.71  E-value=4.8e-17  Score=110.39  Aligned_cols=76  Identities=29%  Similarity=0.486  Sum_probs=68.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~   76 (79)
                      |||||||+||+.+...+++.+....+++|+|+|+|+++.+..+|+|++|++|++++.|++.++..+ .+.++.++..
T Consensus      1469 lLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243       1469 LMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence            699999999999999999999988889999999999999989999999999999999999999864 5667776643

>KOG0057|consensus

Probab=99.71  E-value=7.2e-17  Score=99.76  Aligned_cols=76  Identities=37%  Similarity=0.549  Sum_probs=68.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +||||||+||..++..+...+.....++|+|+|.|+++.+..||+|+++++|++.+.|+..++......+..++..
T Consensus       510 ~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~  585 (591)
T KOG0057|consen  510 LLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT  585 (591)
T ss_pred             EecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence            5899999999999999988888877899999999999999999999999999999999999998855556666643

>KOG0058|consensus

Probab=99.71  E-value=3.4e-17  Score=103.48  Aligned_cols=76  Identities=55%  Similarity=0.771  Sum_probs=70.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhcc-chHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK-GHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~~~~   76 (79)
                      ||||+|||||.+.+..+++.+.+...++|+|+|.|+++.+..+|+|.++++|++.+.|++.++.+.. +.++.+++.
T Consensus       627 ILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~  703 (716)
T KOG0058|consen  627 ILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQR  703 (716)
T ss_pred             EEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHH
Confidence            6999999999999999999999888899999999999999999999999999999999999998877 567777653

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.71  E-value=4.6e-17  Score=104.16  Aligned_cols=72  Identities=40%  Similarity=0.674  Sum_probs=64.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +||||||+||+.++..+.+.+..  .++|+|+|||+++.+..+|++++|++|++++.|++.++....+.+..++
T Consensus       638 iLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~  709 (710)
T TIGR03796       638 ILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI  709 (710)
T ss_pred             EEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence            68999999999999999888875  4899999999999998899999999999999999999887666666544

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.71  E-value=5.4e-17  Score=109.86  Aligned_cols=76  Identities=14%  Similarity=0.301  Sum_probs=68.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      |||||||+||+.+...+++.+....+++|+|+|+|+++.+..+|+|++|++|++++.|++.++....+.++.++..
T Consensus      1376 lLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~ 1451 (1490)
T TIGR01271      1376 LLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451 (1490)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHH
Confidence            6999999999999999999999888899999999999999889999999999999999999988655667766653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.71  E-value=4.3e-17  Score=97.36  Aligned_cols=66  Identities=24%  Similarity=0.468  Sum_probs=59.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +||||||+||+.++..+.+++....+  +.|+|++||+++.+.. ||++++|++|++++.|++.++...
T Consensus       163 LlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~  231 (343)
T TIGR02314       163 LCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH  231 (343)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            58999999999999999999988743  8999999999999966 999999999999999998887654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.71  E-value=6.3e-17  Score=103.56  Aligned_cols=74  Identities=35%  Similarity=0.606  Sum_probs=65.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+... .++|+|+|+|+++.+..+|++++|++|++++.|++.++....+.+..++.
T Consensus       634 iLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~  707 (708)
T TIGR01193       634 ILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH  707 (708)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence            689999999999999998888764 68999999999998888999999999999999999998876666766654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.70  E-value=6.5e-17  Score=101.80  Aligned_cols=75  Identities=47%  Similarity=0.683  Sum_probs=66.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      |||||||+||+.+...+.+.+.....++|+|+|||+++.+..+|++++|++|++.+.|++.++....+.+..++.
T Consensus       494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~  568 (588)
T PRK13657        494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLR  568 (588)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHH
Confidence            689999999999999999988877678999999999998888999999999999999999888766556666543

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.70  E-value=1e-16  Score=91.41  Aligned_cols=73  Identities=52%  Similarity=0.781  Sum_probs=63.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL   73 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~   73 (79)
                      +|||||++||+..+..+.+.+.....++|+|+++|+++.+..||+++++++|+++..+++.++......+..+
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~  233 (237)
T cd03252         161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL  233 (237)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence            6899999999999999999998876689999999999988669999999999999999888876654444443

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.70  E-value=4.2e-17  Score=95.73  Aligned_cols=65  Identities=28%  Similarity=0.436  Sum_probs=58.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-C-CEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-G-RTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~-~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++|||..+..+.+++..+.. + .|++++||.++.+.. ||+++++++|+++..|+..++..
T Consensus       159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~  226 (293)
T COG1131         159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE  226 (293)
T ss_pred             EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            69999999999999999999998865 5 799999999999977 99999999999999998777543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5.1e-17  Score=98.21  Aligned_cols=75  Identities=48%  Similarity=0.677  Sum_probs=69.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +|||+||+||.++++.++..+.....++|.++|.|+++.+..+|.++++++|+|++.|+..+++...+.+..+|+
T Consensus       422 ~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~  496 (497)
T COG5265         422 ILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR  496 (497)
T ss_pred             EEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence            589999999999999999999999999999999999999999999999999999999999999988777776664

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.70  E-value=5.6e-17  Score=96.54  Aligned_cols=69  Identities=28%  Similarity=0.380  Sum_probs=60.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      |+||||++||+..+..+.+++..+.+  +.|+|++||++..+.. ||++++|.+|++++.|+..++..++..
T Consensus       184 ilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~  255 (331)
T PRK15079        184 ICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLH  255 (331)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCC
Confidence            68999999999999999999887643  8899999999999976 999999999999999998887655443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.70  E-value=4.9e-17  Score=90.67  Aligned_cols=64  Identities=23%  Similarity=0.377  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      |||||||+||..+...+.+.+.+... ++++||.+|.++++.. ||+|+++.+|+++..|+...+.
T Consensus       156 vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~  221 (245)
T COG4555         156 VLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD  221 (245)
T ss_pred             EEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence            69999999999999999999988865 9999999999999975 9999999999999999987764

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.70  E-value=1e-16  Score=100.70  Aligned_cols=75  Identities=35%  Similarity=0.514  Sum_probs=67.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.+...+.+.+.....++|+|+++|+++.+..+|+++++++|++.+.|+..++....+.+..++.
T Consensus       474 llDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~  548 (569)
T PRK10789        474 ILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYR  548 (569)
T ss_pred             EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHH
Confidence            689999999999999999999887779999999999998888999999999999999999998876666666553

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=6.8e-17  Score=96.05  Aligned_cols=69  Identities=28%  Similarity=0.358  Sum_probs=60.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      |+||||++||+..+..+.+++.++..  +.|+|+|||++..+.. ||++++|.+|++++.|+..++..++.+
T Consensus       177 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~h  248 (327)
T PRK11308        177 VADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRH  248 (327)
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCC
Confidence            68999999999999999998887643  8899999999999975 999999999999999998887665443

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.69  E-value=6.3e-17  Score=103.40  Aligned_cols=65  Identities=31%  Similarity=0.472  Sum_probs=60.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +||||||+||+.+...+.+.+.....++|+|+|||+++.+..+|++++|++|++++.|++.++.+
T Consensus       624 iLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       624 LLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE  688 (694)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence            68999999999999999999988878999999999999888899999999999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.69  E-value=6.7e-17  Score=100.24  Aligned_cols=71  Identities=31%  Similarity=0.399  Sum_probs=62.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      |+|||||+||+..+..+.+++..+..  +.|.|||+||+..+.. ||+|.+|++|+|++.|+...+...+.+-+
T Consensus       452 i~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Y  525 (539)
T COG1123         452 ILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY  525 (539)
T ss_pred             EecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChH
Confidence            58999999999999999999887753  8999999999999977 99999999999999998777777655533

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.69  E-value=6.9e-17  Score=96.42  Aligned_cols=65  Identities=25%  Similarity=0.448  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|++||+++++.. ||++++|++|+++..|++.++..
T Consensus       195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            6899999999999999999998875 48999999999999976 99999999999999999887643

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.69  E-value=1.3e-16  Score=100.00  Aligned_cols=74  Identities=58%  Similarity=0.792  Sum_probs=65.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +||||||+||+.+...+.+.+....+++|+|+|||++.....||+++++++|++.+.|+++++......+..+.
T Consensus       492 lLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~  565 (571)
T TIGR02203       492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLH  565 (571)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHH
Confidence            58999999999999999999988877899999999998888899999999999999999999876655555544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=1.4e-16  Score=91.55  Aligned_cols=67  Identities=21%  Similarity=0.333  Sum_probs=60.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.++.+++|+|+++|++..+.. ||+++++++|+++..|++.++..+.
T Consensus       169 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~  236 (250)
T PRK14245        169 LMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP  236 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence            689999999999999999999887668899999999998865 9999999999999999988876543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.68  E-value=8.1e-17  Score=88.75  Aligned_cols=66  Identities=29%  Similarity=0.389  Sum_probs=60.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +||||+|+|||..+..|..++.+.+.  +.|++||||+++.+.+ +++++++++|+|.+.|...+....
T Consensus       152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~  220 (231)
T COG3840         152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG  220 (231)
T ss_pred             EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence            58999999999999999999988763  8899999999999977 999999999999999998887654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.68  E-value=1.1e-16  Score=94.28  Aligned_cols=64  Identities=19%  Similarity=0.366  Sum_probs=57.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus       147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  212 (302)
T TIGR01188       147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK  212 (302)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            5899999999999999999998875 48899999999999976 9999999999999998887754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.68  E-value=9.4e-17  Score=102.91  Aligned_cols=70  Identities=50%  Similarity=0.721  Sum_probs=60.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWT   72 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~   72 (79)
                      |||||||+||+.+...+.+  ....+++|+|+|+|+++.+..+|+|+++++|++++.|++.++.+..+.+..
T Consensus       640 ILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~  709 (711)
T TIGR00958       640 ILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH  709 (711)
T ss_pred             EEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHh
Confidence            6899999999999888887  223468999999999998888999999999999999999998876555554

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.68  E-value=7.1e-17  Score=97.55  Aligned_cols=72  Identities=29%  Similarity=0.449  Sum_probs=64.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT   72 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~   72 (79)
                      +||||||+||-..+.++..+++.+..  +.+-+||+||+..+.. |++|++|++|+|+++|+..+++.++...++
T Consensus       449 ~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT  523 (534)
T COG4172         449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT  523 (534)
T ss_pred             EecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHH
Confidence            58999999999999999999987743  8899999999999966 999999999999999999999888777554

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.3e-16  Score=94.09  Aligned_cols=66  Identities=20%  Similarity=0.437  Sum_probs=58.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus       188 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            6899999999999999999888774 48999999999998855 999999999999999988776543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2e-16  Score=91.09  Aligned_cols=69  Identities=17%  Similarity=0.222  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      ||||||++||+..+..+.+.+..+..+.|+|+++|+++.+.. +|++++|++|+++..|++.++...+..
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~  242 (254)
T PRK14273        173 LMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKN  242 (254)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence            689999999999999999999887667899999999999865 999999999999999998887654433

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2e-16  Score=91.32  Aligned_cols=66  Identities=20%  Similarity=0.367  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. ||++++|++|++...+++.++...
T Consensus       177 llDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  243 (258)
T PRK14268        177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN  243 (258)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            589999999999999999999887668899999999999865 999999999999999988877543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.68  E-value=1.6e-16  Score=90.60  Aligned_cols=65  Identities=32%  Similarity=0.421  Sum_probs=57.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+...  ++|+|+++|+++.+.. ||++++|++|+++..|++.++..
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            68999999999999999999887643  7899999999998865 99999999999999888877654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.68  E-value=1.8e-16  Score=90.30  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. .++|+|++||+++.+.. ||+++++++|++...+++.++..
T Consensus       166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            5899999999999999999998765 58899999999999866 99999999999998888776644

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.4e-16  Score=93.25  Aligned_cols=65  Identities=23%  Similarity=0.428  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       167 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        167 VLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            6899999999999999999888765 48899999999998865 99999999999999999887654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.68  E-value=1.5e-16  Score=95.60  Aligned_cols=67  Identities=28%  Similarity=0.411  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +||||||+||+..+..+.+.+..+. . ++|+|++||+++++.. ||++++|++|+++..|++.++...+
T Consensus       152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p  221 (363)
T TIGR01186       152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP  221 (363)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence            5899999999999999999888764 3 8999999999998865 9999999999999999988876543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3e-16  Score=90.64  Aligned_cols=67  Identities=16%  Similarity=0.303  Sum_probs=60.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.+...++|+|+++|+++.+.. ||++++|++|+++..|++.++..+.
T Consensus       178 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  245 (259)
T PRK14274        178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP  245 (259)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence            589999999999999999999887668899999999998865 9999999999999999988876543

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.67  E-value=3.1e-16  Score=98.44  Aligned_cols=75  Identities=55%  Similarity=0.722  Sum_probs=65.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+....+++|+|++||+++....+|+++.+++|++.+.|++.+.......+..++.
T Consensus       499 ilDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~  573 (576)
T TIGR02204       499 LLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR  573 (576)
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence            689999999999999999988887778999999999988888999999999999999999888766555665543

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2.6e-16  Score=90.47  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.+...++|+|++||+++.+.. ||++++|++|++...|+..++...+
T Consensus       171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  238 (252)
T PRK14239        171 LLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP  238 (252)
T ss_pred             EEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence            689999999999999999999887667899999999998865 9999999999999999988876543

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.67  E-value=2e-16  Score=95.06  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC---CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~---~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||+++||+..+..+...+.+..+   +.|+|++||+++++.. +|++++|++|+++..|++.++...+.+
T Consensus       160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~  232 (362)
T TIGR03258       160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD  232 (362)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCc
Confidence            58999999999999999998887643   6899999999999865 999999999999999999988765543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.67  E-value=2.4e-16  Score=90.48  Aligned_cols=66  Identities=18%  Similarity=0.335  Sum_probs=58.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+....++.|+|+++|+++.+.. +|++++|++|++...+++.++...
T Consensus       167 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  233 (247)
T TIGR00972       167 LLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN  233 (247)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            589999999999999999999887656899999999998865 999999999999999988877543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.67  E-value=2.8e-16  Score=89.46  Aligned_cols=67  Identities=60%  Similarity=0.779  Sum_probs=59.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.....+.|+|++||++..+..||+++++++|++...++..++....
T Consensus       161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  227 (234)
T cd03251         161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG  227 (234)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence            5899999999999999999998876788999999999988669999999999999888877765543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.67  E-value=4.8e-16  Score=88.73  Aligned_cols=71  Identities=62%  Similarity=0.844  Sum_probs=61.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||++||+..+..+.+.+..+..++++|+++|+++.+..||+++++++|++...++..++........
T Consensus       162 llDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~  232 (238)
T cd03249         162 LLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYA  232 (238)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHH
Confidence            58999999999999999999987767889999999999887799999999999999888777655444433

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.5e-16  Score=89.98  Aligned_cols=67  Identities=19%  Similarity=0.386  Sum_probs=59.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+..+..++|+|+++|++..+.. ||++++|++|++...+++.++...+
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  239 (251)
T PRK14244        172 LMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP  239 (251)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence            589999999999999999999887668999999999999865 9999999999999999888776543

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.3e-16  Score=90.83  Aligned_cols=67  Identities=15%  Similarity=0.294  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+..+..+.|+|++||++..+.. ||++++|++|+++..+++.++..+.
T Consensus       187 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  254 (268)
T PRK14248        187 LLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSP  254 (268)
T ss_pred             EEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence            689999999999999999999887667899999999998865 9999999999999999888776543

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.67  E-value=2.5e-16  Score=95.18  Aligned_cols=67  Identities=19%  Similarity=0.333  Sum_probs=59.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.++..  ++|+|++||+++++.. +|++++|++|+++..|++.++...+
T Consensus       187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p  256 (382)
T TIGR03415       187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP  256 (382)
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence            58999999999999999998877643  8999999999999865 9999999999999999988876543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.67  E-value=2.6e-16  Score=94.34  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=60.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|++||++.++.. ||++++|++|+++..|++.++...+..
T Consensus       159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~  230 (353)
T PRK10851        159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT  230 (353)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence            58999999999999999998887643  7899999999999866 999999999999999999888665443

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=2.4e-16  Score=93.49  Aligned_cols=65  Identities=25%  Similarity=0.430  Sum_probs=57.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       199 LLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  265 (320)
T PRK13631        199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT  265 (320)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            6899999999999999999988764 48899999999998854 99999999999999998876543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.67  E-value=2.3e-16  Score=92.91  Aligned_cols=65  Identities=23%  Similarity=0.441  Sum_probs=58.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            5899999999999999999998774 48899999999999965 99999999999999998877643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3e-16  Score=90.25  Aligned_cols=67  Identities=16%  Similarity=0.293  Sum_probs=59.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.....+.|+|++||+++.+.. ||+++++++|+++..+++.++..++
T Consensus       170 llDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  237 (251)
T PRK14270        170 LMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEP  237 (251)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCC
Confidence            589999999999999999999887667899999999998865 9999999999999999988876543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.66  E-value=7.6e-16  Score=88.91  Aligned_cols=67  Identities=36%  Similarity=0.553  Sum_probs=59.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+.....+.+.+.....+.|+|+++|++..+..||++++|++|+++..|++.++....
T Consensus       179 llDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~  245 (257)
T cd03288         179 IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE  245 (257)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence            5899999999999999999888776689999999999988779999999999999999888776543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3.6e-16  Score=89.94  Aligned_cols=66  Identities=15%  Similarity=0.369  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. ||++++|++|++...|++.++...
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  238 (253)
T PRK14242        172 LMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR  238 (253)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence            589999999999999999999887667899999999999865 999999999999998888777543

>KOG0054|consensus

Probab=99.66  E-value=2.6e-16  Score=105.17  Aligned_cols=74  Identities=35%  Similarity=0.576  Sum_probs=68.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH-HHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW-TLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~-~~~   74 (79)
                      ||||+|+++|+.+...+++.+++..+++|+|.|.|++..+..+|+|++|++|++++.++|.++++++...+ ..+
T Consensus      1298 vLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372 (1381)
T ss_pred             EEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999998766644 343

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.66  E-value=3.2e-16  Score=92.24  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++..+.|+|++||+++++.. ||+++++++|++...|+..++..
T Consensus       156 iLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       156 ILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            589999999999999999999888668999999999999876 99999999999999998887643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.66  E-value=6.7e-17  Score=92.32  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      |||||+|+|||.+...+.+.+.+.+ +|.|+|+.+|.|+.+.. ||+++.++.|+.+.+|+...+.+
T Consensus       153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence            6999999999999999999888775 49999999999999976 99999999999999999877654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.9e-16  Score=94.23  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=60.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+..+..  +.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus       157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~  228 (356)
T PRK11650        157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS  228 (356)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence            58999999999999999888887643  8899999999998865 999999999999999999888765543

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.7e-16  Score=92.03  Aligned_cols=65  Identities=18%  Similarity=0.362  Sum_probs=57.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+++.++..  +.|+|++||+++.+.. ||++++|++|++...|++.++..
T Consensus       167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        167 ILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            68999999999999999999987743  7899999999998865 99999999999999998877643

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=3.6e-16  Score=93.72  Aligned_cols=69  Identities=20%  Similarity=0.343  Sum_probs=61.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||+|+||+..+..+...+..+.+  +.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus       159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~  230 (351)
T PRK11432        159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS  230 (351)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence            58999999999999999998887743  8999999999999865 999999999999999999888765544

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.66  E-value=1.8e-16  Score=89.95  Aligned_cols=61  Identities=25%  Similarity=0.357  Sum_probs=54.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~   61 (79)
                      +|||||++||+..+..+.+.+.+.....|+|++||+++.+.. ||+++++++|+++..|++.
T Consensus       164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  225 (227)
T cd03260         164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE  225 (227)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence            589999999999999999999887545899999999998865 9999999999998887654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.2e-16  Score=89.53  Aligned_cols=66  Identities=21%  Similarity=0.321  Sum_probs=59.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|+++|+++.+.. ||++++|++|++...|++.++...
T Consensus       169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14247        169 LADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN  235 (250)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence            689999999999999999999887668999999999998865 999999999999999998877654

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.66  E-value=3.6e-16  Score=89.44  Aligned_cols=65  Identities=20%  Similarity=0.342  Sum_probs=58.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+..+.|+|++||+++.+.. ||+++++++|+++..++..++..
T Consensus       166 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       166 LLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             EecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            589999999999999999999887667899999999999865 99999999999999888877654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=5.3e-16  Score=89.17  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. +|++++|++|++...++..++...+
T Consensus       170 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  237 (251)
T PRK14251        170 LLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP  237 (251)
T ss_pred             EecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCC
Confidence            689999999999999999999887667899999999999865 9999999999999999888775443

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.66  E-value=3.8e-16  Score=93.68  Aligned_cols=69  Identities=23%  Similarity=0.352  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||+|+||+..+..+...+.+..+  +.|+|++||++.++.. +|++++|++|+++..|++.++...+..
T Consensus       157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~  228 (353)
T TIGR03265       157 LLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT  228 (353)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence            58999999999999999998887643  8899999999999865 999999999999999999888765543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.8e-16  Score=89.44  Aligned_cols=67  Identities=21%  Similarity=0.355  Sum_probs=59.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.++..+.|+|+++|+++.+.. ||++++|++|++...++..++....
T Consensus       171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  238 (252)
T PRK14256        171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTP  238 (252)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence            689999999999999999999888667899999999999865 9999999999999999988876543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=4.1e-16  Score=89.00  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||+++++++|+++..|++.++..
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            5899999999999999999988765 48999999999998855 99999999999999998887754

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.9e-16  Score=91.75  Aligned_cols=65  Identities=23%  Similarity=0.350  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+..+..+.+.+.++..  +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            68999999999999999998887753  8899999999999865 99999999999999998877654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=3.4e-16  Score=91.74  Aligned_cols=65  Identities=22%  Similarity=0.368  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       168 llDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            6899999999999999999988774 3 8899999999999865 99999999999999998777543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.66  E-value=3.4e-16  Score=89.46  Aligned_cols=65  Identities=22%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++..  ++|+|+++|+++.+.. ||++++|++|++...+++.++..
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            68999999999999999999987743  7899999999998865 99999999999999998877654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.65  E-value=3.7e-16  Score=94.18  Aligned_cols=68  Identities=25%  Similarity=0.352  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      +|||||++||+..+..+.+.+.++. + +.|+|++||+++++.. ||++++|++|++...|++.++...+.
T Consensus       156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~  226 (369)
T PRK11000        156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  226 (369)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            5899999999999999998888764 3 8899999999998865 99999999999999999888765443

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=6.3e-16  Score=89.34  Aligned_cols=66  Identities=21%  Similarity=0.383  Sum_probs=58.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||++..+.. +|+++++++|+++..++..++...
T Consensus       179 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  245 (260)
T PRK10744        179 LLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK  245 (260)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            689999999999999999999887667899999999998865 999999999999999988777543

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.2e-16  Score=89.29  Aligned_cols=66  Identities=15%  Similarity=0.310  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.....++|+|+++|+++.+.. ||++++|++|++...|++.++...
T Consensus       172 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (253)
T PRK14267        172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN  238 (253)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            689999999999999999999887667899999999999865 999999999999999988877543

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.65  E-value=1.1e-15  Score=87.18  Aligned_cols=71  Identities=54%  Similarity=0.750  Sum_probs=60.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||++||+.....+.+.+.....+.|+|+++|+++.+..||+++++++|++...++..++........
T Consensus       160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~  230 (236)
T cd03253         160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA  230 (236)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence            68999999999999999999887756889999999999886699999999999998888777655433333

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=6.4e-16  Score=88.88  Aligned_cols=67  Identities=18%  Similarity=0.315  Sum_probs=59.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. ||++++|++|+++..+++.+...++
T Consensus       171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  238 (252)
T PRK14255        171 LLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP  238 (252)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence            689999999999999999999887657899999999999865 9999999999999998887776543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.65  E-value=5.1e-16  Score=92.24  Aligned_cols=67  Identities=21%  Similarity=0.368  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.+.. + +.|+|++||++.++.. ||++++|++|++...|++.++...+
T Consensus       123 lLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~  192 (325)
T TIGR01187       123 LLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP  192 (325)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            6899999999999999999888764 3 7899999999998865 9999999999999999988876543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4.4e-16  Score=91.17  Aligned_cols=65  Identities=23%  Similarity=0.425  Sum_probs=57.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|++||+++.+.. ||+++++++|+++..|++.++..
T Consensus       168 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        168 CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            6899999999999999999998775 48899999999999865 99999999999999888776543

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.65  E-value=4.8e-16  Score=87.83  Aligned_cols=62  Identities=19%  Similarity=0.394  Sum_probs=55.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+.....+.+.+.+...+.|+|+++|+++.+.. ||+++++++|+++..+++.+
T Consensus       156 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  218 (220)
T cd03263         156 LLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE  218 (220)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence            589999999999999999999887667899999999999865 99999999999998877654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=6.8e-16  Score=88.63  Aligned_cols=65  Identities=18%  Similarity=0.340  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+.....+.+.+.+..++.|+|++||+++.+.. ||+++++++|++...|+..++..
T Consensus       168 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (249)
T PRK14253        168 LMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS  233 (249)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            589999999999999999999888667899999999999866 99999999999999888777654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=8.4e-16  Score=88.30  Aligned_cols=66  Identities=23%  Similarity=0.366  Sum_probs=58.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. +|+++++++|+++..++..++...
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  235 (250)
T PRK14240        169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN  235 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            589999999999999999999887668899999999998866 999999999999999988776543

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.65  E-value=5.2e-16  Score=94.31  Aligned_cols=65  Identities=18%  Similarity=0.288  Sum_probs=58.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+++.++. .+.|+|+++|+++.+.. ||++++|++|+++..|++.++..
T Consensus       162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~  228 (402)
T PRK09536        162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT  228 (402)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence            5899999999999999999988875 48899999999999965 99999999999999999887654

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.65  E-value=3.9e-16  Score=89.16  Aligned_cols=63  Identities=30%  Similarity=0.329  Sum_probs=56.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+....  .++|+|++||+++.+.. ||++++|++|+++..+++.++
T Consensus       167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence            6899999999999999999988764  38899999999999975 999999999999998887765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=7.2e-16  Score=89.63  Aligned_cols=67  Identities=16%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+.....+.+.+..+.++.|+|+++|+++.+.. ||++++|++|++...|++.++...+
T Consensus       190 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~  257 (271)
T PRK14238        190 LMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP  257 (271)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence            689999999999999999999887667899999999999865 9999999999999999988876543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.65  E-value=4.6e-16  Score=98.68  Aligned_cols=69  Identities=26%  Similarity=0.359  Sum_probs=60.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      ||||||++||+..+..+.+++..+. . +.|+|++||+++.+.. ||++++|++|++++.|+..++..++.+
T Consensus       486 llDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~  557 (623)
T PRK10261        486 IADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH  557 (623)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCC
Confidence            6899999999999999999998764 3 7899999999999966 999999999999999998887654433

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=7.8e-16  Score=88.33  Aligned_cols=66  Identities=21%  Similarity=0.413  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+.....+.+.+.+...+.|+|++||+++.+.. +|+++++++|+++..|+..++...
T Consensus       165 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        165 LLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            589999999999999999999877668999999999998865 999999999999999988877543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.65  E-value=5.7e-16  Score=88.56  Aligned_cols=66  Identities=24%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+..+. .++|+|++||+++.+.. ||+++++++|+++..|+..++...
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            5899999999999999999988775 48999999999999865 999999999999999988776543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=8.7e-16  Score=88.31  Aligned_cols=67  Identities=19%  Similarity=0.320  Sum_probs=59.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+.....+.+.+.++..+.|+|++||++..+.. ||++++|++|++...+++.++...+
T Consensus       170 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  237 (251)
T PRK14249        170 LMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP  237 (251)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCC
Confidence            689999999999999999999877668899999999999876 8999999999999999888775543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.65  E-value=5.1e-16  Score=88.41  Aligned_cols=65  Identities=29%  Similarity=0.489  Sum_probs=57.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+. . +.|+|+++|+++.+.. +|++++|++|+++..++..++..
T Consensus       163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            6899999999999999999998764 3 7899999999998865 99999999999999887766543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.65  E-value=6.6e-16  Score=87.89  Aligned_cols=66  Identities=29%  Similarity=0.395  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...  +.|+|+++|+++.+.. +|++++|++|++...+++.++...
T Consensus       148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            68999999999999999998887643  7899999999999865 999999999999999988887643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=5.9e-16  Score=89.93  Aligned_cols=65  Identities=22%  Similarity=0.384  Sum_probs=57.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|+++|++..+.. ||++++|++|+++..|++.++..
T Consensus       159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            6899999999999999999988764 47899999999999865 99999999999999888776543

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.65  E-value=7.2e-16  Score=88.95  Aligned_cols=66  Identities=24%  Similarity=0.420  Sum_probs=58.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+.....+.+.+.++.. +.|+|++||++..+.. ||+++++++|+++..|++.++...
T Consensus       175 llDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  242 (257)
T PRK10619        175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN  242 (257)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence            68999999999999999999887754 8999999999999876 999999999999999888776543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.65  E-value=4.9e-16  Score=87.84  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=55.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|+++|+++.+.. ||+++++++|++...++..++
T Consensus       155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            5899999999999999999998775 47899999999998865 999999999999988876654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=6.3e-16  Score=92.41  Aligned_cols=66  Identities=26%  Similarity=0.466  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|+++..|+..++...
T Consensus       163 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            5899999999999999999998774 3 7899999999999866 999999999999999988776543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.1e-16  Score=93.07  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=60.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|++||+++++.. ||++++|++|++...|++.++...+..
T Consensus       151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~  222 (352)
T PRK11144        151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM  222 (352)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence            58999999999999999998887643  7899999999998865 999999999999999999888765543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=6.7e-16  Score=88.75  Aligned_cols=66  Identities=21%  Similarity=0.341  Sum_probs=59.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++..+.|+|+++|+++.+.. ||++++|++|+++..|++.++...
T Consensus       171 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14272        171 LMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN  237 (252)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            689999999999999999999887667999999999999875 999999999999999988877554

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.64  E-value=7.3e-16  Score=88.51  Aligned_cols=66  Identities=32%  Similarity=0.465  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++.. +.|+|++||++..+.. ||++++|++|+++..++..++...
T Consensus       167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  234 (250)
T PRK11264        167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD  234 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            68999999999999999999887754 8899999999999865 999999999999999888776543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.64  E-value=5.4e-16  Score=88.22  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+... +.|+|+++|+++.+.. ||+++++++|++...++..++..
T Consensus       156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            68999999999999999999887654 8899999999988865 99999999999998888776643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.64  E-value=6.6e-16  Score=93.23  Aligned_cols=69  Identities=25%  Similarity=0.357  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||+|+||+..+..+...+.....  +.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus       167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~  238 (375)
T PRK09452        167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN  238 (375)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence            58999999999999999998887643  8999999999998865 999999999999999999888765544

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.64  E-value=8.9e-16  Score=87.18  Aligned_cols=65  Identities=54%  Similarity=0.784  Sum_probs=57.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+..+.|+|++||++..+..||++++|++|++...++..++..
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  226 (229)
T cd03254         162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA  226 (229)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            58999999999999999999988766899999999999886699999999999998877666543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=5.9e-16  Score=90.59  Aligned_cols=65  Identities=26%  Similarity=0.449  Sum_probs=57.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+...+.++.  .+.|+|++||+++.+.. +|++++|++|+++..|++.++..
T Consensus       168 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            6899999999999999999998874  38999999999998865 99999999999999998877554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.64  E-value=7.9e-16  Score=89.39  Aligned_cols=66  Identities=24%  Similarity=0.386  Sum_probs=58.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|++...|++.++...
T Consensus       183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            6899999999999999999988764 3 7899999999998865 999999999999999988877543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.64  E-value=6.9e-16  Score=88.63  Aligned_cols=65  Identities=23%  Similarity=0.367  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +||||++++|+..+..+..++.+++. |+||++|+||+..+.. +|+|+.+ ++++...|++.++.+.
T Consensus       162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~  228 (254)
T COG1121         162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE  228 (254)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence            69999999999999999999998865 9999999999999966 9999999 5778888998887653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.64  E-value=7.9e-16  Score=89.28  Aligned_cols=66  Identities=17%  Similarity=0.348  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|+++|+++.+.. ||+++++++|++...++..++...
T Consensus       186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  252 (267)
T PRK14235        186 LMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN  252 (267)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            689999999999999999999887667899999999999865 999999999999999988777543

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=6.9e-16  Score=89.95  Aligned_cols=65  Identities=28%  Similarity=0.391  Sum_probs=57.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+..+..+.+.+.++..  +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            68999999999999999999887643  7899999999999865 99999999999999998877643

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.64  E-value=8.7e-16  Score=89.00  Aligned_cols=65  Identities=29%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|+++|+++.+.. +|+++++++|+++..|+..++..
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       173 VLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence            58999999999999999999987643  7899999999999965 99999999999999999888765

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=9.8e-16  Score=89.42  Aligned_cols=65  Identities=25%  Similarity=0.427  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+..+..+.+.+.++.  .+.|+|++||+++.+..||+++++++|++...|++.++..
T Consensus       167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (280)
T PRK13633        167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK  233 (280)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence            6899999999999999999998874  3889999999999886699999999999999998877654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.2e-15  Score=87.73  Aligned_cols=66  Identities=21%  Similarity=0.421  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+..+++|+|++||+++.+.. +|+++++++|++...|++.++...
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14262        169 LLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER  235 (250)
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            589999999999999999999887667899999999998755 999999999999999988877643

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=8.4e-16  Score=89.69  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++..  +.|+|++||+++.+..||+++++++|++...|++.++..
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13650        163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS  229 (279)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            68999999999999999999887753  899999999999886699999999999999888777654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.64  E-value=6.2e-16  Score=88.45  Aligned_cols=63  Identities=32%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.+.. + ++|+|++||+++.+.. ||++++|++|+++..|++.++
T Consensus       168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            6899999999999999999988764 3 7899999999999865 999999999999988887765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.3e-15  Score=88.40  Aligned_cols=66  Identities=17%  Similarity=0.323  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+.....+.+.+.....+.++|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus       186 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  252 (267)
T PRK14237        186 LMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN  252 (267)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            589999999999999999999887667899999999998855 999999999999999998887543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=9.9e-16  Score=89.21  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+...+.++.. +.|+|+++|+++.+.. ||++++|++|+++..|++.++..
T Consensus       160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            68999999999999999999987754 8999999999999865 99999999999999998877654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.1e-15  Score=88.86  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+..++.|+|++||+++.+.. ||++++|++|++...|++.++...
T Consensus       191 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  257 (272)
T PRK14236        191 LLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS  257 (272)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence            689999999999999999999887667899999999999865 999999999999999988776543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1e-15  Score=89.64  Aligned_cols=66  Identities=17%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      ||||||++||+.....+.+.+.++..+.|+|+++|+++.+.. ||++++|++|++...|+..++...
T Consensus       205 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~  271 (286)
T PRK14275        205 LLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN  271 (286)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            689999999999999999999887667899999999999865 999999999999999988777554

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=9.7e-16  Score=89.23  Aligned_cols=65  Identities=32%  Similarity=0.528  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|++||+++.+..||+++++++|+++..|+..++..
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            5899999999999999999998765 4899999999999886699999999999999888776543

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=88.25  Aligned_cols=67  Identities=16%  Similarity=0.295  Sum_probs=59.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe---------CceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+..+..+.|+|+++|+++.+.. ||++++|+         +|++++.|+..++...+
T Consensus       174 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~  250 (264)
T PRK14243        174 LMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSP  250 (264)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCC
Confidence            689999999999999999999887667899999999999866 99999998         79999999988886544

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.63  E-value=7.8e-16  Score=87.49  Aligned_cols=63  Identities=17%  Similarity=0.276  Sum_probs=56.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|++||+++.+.. ||+++++++|+++..++..++
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            58999999999999999999987753  7899999999999975 999999999999998887765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.63  E-value=1.1e-15  Score=88.17  Aligned_cols=67  Identities=21%  Similarity=0.353  Sum_probs=58.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+.....+.+.+.....  +.|+|++||+++.+.. ||+++++++|+++..|++.++..++
T Consensus       174 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~  243 (258)
T PRK11701        174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDP  243 (258)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence            58999999999999999998887643  7899999999999975 9999999999999999888775443

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.6e-15  Score=88.04  Aligned_cols=66  Identities=20%  Similarity=0.339  Sum_probs=57.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+..+  +.|+|++||+++.+..+|+++++++|++...|++.++...
T Consensus       165 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            68999999999999999999887643  7899999999998866999999999999998888776443

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=8.4e-16  Score=89.48  Aligned_cols=62  Identities=21%  Similarity=0.397  Sum_probs=55.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++..
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  224 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL  224 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            5899999999999999999998774 38899999999999855 99999999999999888654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=9.9e-16  Score=89.70  Aligned_cols=64  Identities=19%  Similarity=0.385  Sum_probs=56.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+.++.  .++|+|++||+++.+.. ||+++++++|+++..|++.++.
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            6899999999999999999888764  37899999999998865 9999999999999888876654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.5e-15  Score=87.43  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=59.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.....+.|+|+++|++..+.. +|++++|++|++...|+..++...+
T Consensus       172 lLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  239 (253)
T PRK14261        172 LMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP  239 (253)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCC
Confidence            589999999999999999999887667899999999999865 9999999999999999888775443

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=87.35  Aligned_cols=67  Identities=21%  Similarity=0.318  Sum_probs=58.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+....  .+.|+|++||+++.+.. ||+++++++|+++..+++.++...+
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  223 (241)
T PRK14250        154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP  223 (241)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence            6899999999999999999888764  37899999999999865 9999999999999999888776543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.2e-15  Score=92.75  Aligned_cols=67  Identities=27%  Similarity=0.383  Sum_probs=58.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.+..  .++|+|++||+++++.. +|++++|++|+++..|++.++...+
T Consensus       187 LLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~  256 (400)
T PRK10070        187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP  256 (400)
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence            6899999999999999999888764  38899999999998865 9999999999999989888776543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.4e-15  Score=86.57  Aligned_cols=67  Identities=27%  Similarity=0.333  Sum_probs=58.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+..+. . +.|+|+++|+++.+.. ||+++++.+|++...|++.++....
T Consensus       152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~  221 (232)
T PRK10771        152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK  221 (232)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence            6899999999999999999988764 3 7899999999999865 9999999999999999887776543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.1e-15  Score=92.33  Aligned_cols=69  Identities=19%  Similarity=0.296  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||+|+||+..+..+...+.+..  .+.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus       172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~  243 (377)
T PRK11607        172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTT  243 (377)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCcc
Confidence            5899999999999998887776653  38899999999998865 999999999999999999888765554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.63  E-value=1.5e-15  Score=88.18  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|++||++..+.. ||++++|++|+++..|++.++...
T Consensus       166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (269)
T PRK11831        166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN  234 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence            68999999999999999999887643  7899999999998866 999999999999999888776543

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.63  E-value=1.4e-15  Score=87.54  Aligned_cols=66  Identities=26%  Similarity=0.413  Sum_probs=58.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+..+  +.|+|++||++..+.. +|++++|++|++++.|+..++...
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  237 (252)
T TIGR03005       169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ  237 (252)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            58999999999999999998887643  7899999999999865 999999999999999988777543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.2e-15  Score=88.92  Aligned_cols=65  Identities=25%  Similarity=0.449  Sum_probs=57.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+.+ +.|+|++||+++.+.. ||+++++++|++...|++.++..
T Consensus       168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        168 VLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            68999999999999999999887654 7899999999998865 99999999999998888766543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.63  E-value=9.2e-16  Score=87.26  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=64.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT   72 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~   72 (79)
                      +||||.++|.+.....+...+.....  +.|+++|.|+++.+.. ||++++|+.|+++..|+|.++.+++.....
T Consensus       172 LLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~VieA  246 (250)
T COG0411         172 LLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVIEA  246 (250)
T ss_pred             EecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhHHH
Confidence            58999999999999999999988864  6999999999999976 999999999999999999999887765543

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.63  E-value=8.9e-16  Score=86.32  Aligned_cols=58  Identities=22%  Similarity=0.329  Sum_probs=52.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.....+.|+|+++|+++.+.. +|+++++++|++...|
T Consensus       153 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            589999999999999999999887667999999999999865 9999999999987643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.63  E-value=1.1e-15  Score=91.75  Aligned_cols=68  Identities=26%  Similarity=0.353  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      +|||||++||+..+..+.+.+.++..  +.|+|++||+++.+.. +|++++|++|++...|++.++...+.
T Consensus       154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  224 (354)
T TIGR02142       154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD  224 (354)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence            58999999999999999999887643  7899999999998865 99999999999999998887765443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.63  E-value=1.8e-15  Score=86.37  Aligned_cols=65  Identities=25%  Similarity=0.411  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+.  .+.|+|+++|+++.+..||++++|++|++...+++..+..
T Consensus       155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (236)
T TIGR03864       155 LLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG  221 (236)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence            5899999999999999999988775  3789999999999886699999999999999888776654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.4e-15  Score=88.79  Aligned_cols=65  Identities=28%  Similarity=0.429  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++..  +.|+|++||+++.+..||+++++.+|++++.|+..++..
T Consensus       163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence            68999999999999999999987753  789999999999886799999999999999888766543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.63  E-value=1.6e-15  Score=88.02  Aligned_cols=74  Identities=15%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +|||||++||+.....+.+.+..+. .+.|+|+++|++..+.. |++++++++|++...|+..++......+...+
T Consensus       166 lLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~  241 (264)
T PRK13546        166 VIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDF  241 (264)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHH
Confidence            5899999999999988888887764 48899999999999865 99999999999999998887765444444443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.63  E-value=6.9e-16  Score=86.87  Aligned_cols=58  Identities=28%  Similarity=0.370  Sum_probs=51.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.++.  .+.|+|+++|+++.+.. ||+++++++|++...|
T Consensus       153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            6899999999999999999998764  37899999999998865 9999999999987643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.4e-15  Score=87.57  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. + +.|+|++||+++.+.. ||+++++++|+++..++..++..
T Consensus       176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence            6899999999999999999988764 3 7899999999999865 99999999999999888777654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.8e-15  Score=88.13  Aligned_cols=67  Identities=21%  Similarity=0.309  Sum_probs=59.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe---------CceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i~~~~~~~~~~~~~   67 (79)
                      ||||||++||+..+..+.+.+.++.++.|+|+++|+++.+.. ||++++|+         +|+++..|+..++...+
T Consensus       184 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~  260 (274)
T PRK14265        184 LMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSP  260 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCC
Confidence            689999999999999999999887667899999999999965 99999997         79999999998876543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.63  E-value=1.2e-15  Score=87.73  Aligned_cols=65  Identities=23%  Similarity=0.418  Sum_probs=57.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|+++|+++.+.. ||++++|++|+++..|+..++..
T Consensus       156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence            5899999999999999999988775 47899999999998855 99999999999999888776543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.63  E-value=1.3e-15  Score=88.39  Aligned_cols=66  Identities=18%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++.  .+.|+|+++|+++.+.. ||+++++++|++...+++.++...
T Consensus       172 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  240 (267)
T PRK15112        172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS  240 (267)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence            6899999999999999999888764  37899999999999976 999999999999998888877654

>KOG0056|consensus

Probab=99.62  E-value=7.6e-16  Score=95.26  Aligned_cols=75  Identities=45%  Similarity=0.723  Sum_probs=69.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~   75 (79)
                      +|||+||+||..+++.++..+...+.++|.|+|.|+++.+-.+|.++++++|+|++.|+..++... .+.+...++
T Consensus       697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq  772 (790)
T KOG0056|consen  697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQ  772 (790)
T ss_pred             EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999999998764 666777774

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.62  E-value=1.1e-15  Score=95.35  Aligned_cols=66  Identities=29%  Similarity=0.428  Sum_probs=58.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      ||||||++||+..+..+.+.+.++. + +.|+|++||++..+.. ||++++|++|+++..|+..++...
T Consensus       448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  516 (529)
T PRK15134        448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA  516 (529)
T ss_pred             EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence            6899999999999999999998774 3 7899999999999865 999999999999999988877654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1.8e-15  Score=88.20  Aligned_cols=65  Identities=26%  Similarity=0.368  Sum_probs=57.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+...+.++.+  +.|+|++||+++.+..+|++++|++|+++..|++.++..
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA  229 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            68999999999999999999887753  889999999999986799999999999999888877654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.62  E-value=1.4e-15  Score=86.92  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=55.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc--CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+..  ||++++|++|++...|++...
T Consensus       167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (243)
T TIGR01978       167 ILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA  232 (243)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence            6899999999999999999998875 47899999999999864  799999999999988887644

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.62  E-value=1.7e-15  Score=102.63  Aligned_cols=76  Identities=32%  Similarity=0.561  Sum_probs=66.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeC----ceEe-eecChhHHhh-ccchHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQA----GQIV-EMGNHKSLLA-KKGHYWT   72 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~----G~i~-~~~~~~~~~~-~~~~~~~   72 (79)
                      |||||||+||+.+...+.+.+....  +++|+|+|+|+++.+..+|+|++|++    |+++ +.|++.++.. ..+.++.
T Consensus      1381 LLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~ 1460 (1466)
T PTZ00265       1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460 (1466)
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHH
Confidence            6999999999999999999998874  58999999999999988999999999    8855 7999999987 4677777


Q ss_pred             HHhc
Q psy10474         73 LMNQ   76 (79)
Q Consensus        73 ~~~~   76 (79)
                      +++.
T Consensus      1461 l~~~ 1464 (1466)
T PTZ00265       1461 YVKL 1464 (1466)
T ss_pred             HHhh
Confidence            7654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.62  E-value=1.5e-15  Score=86.94  Aligned_cols=65  Identities=23%  Similarity=0.426  Sum_probs=57.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... . +.|+|++||++..+.. +|+++++++|+++..++...+..
T Consensus       158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence            5899999999999999999888774 3 7899999999998865 99999999999999888776644

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2.3e-15  Score=87.46  Aligned_cols=67  Identities=21%  Similarity=0.340  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeC-----------ceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-----------GQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~-----------G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.....+.|+|++||++..+.. ||++++|++           |++++.|++.++...+
T Consensus       177 lLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~  255 (269)
T PRK14259        177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP  255 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCc
Confidence            689999999999999999999887667899999999998865 999999996           6688889888876543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.62  E-value=1.7e-15  Score=94.76  Aligned_cols=65  Identities=35%  Similarity=0.513  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +||||||+||+.++..+.+.+.... .++|+|+++|+++.+..+|+++++++|++++.|++.++..
T Consensus       477 ilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            6899999999999999999888775 5899999999999777799999999999999998877643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.62  E-value=1.4e-15  Score=85.99  Aligned_cols=62  Identities=19%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+.....+.+.+.+.. + +.|+|++||+++.+.. ||+++++++|+++..+++.+
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            5899999999999999999888764 3 7899999999999865 99999999999988776543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2.6e-15  Score=86.79  Aligned_cols=66  Identities=21%  Similarity=0.336  Sum_probs=58.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe-----CceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-----AGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~-----~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.....+.|+|++||+++.+.. ||++++|+     +|+++..|++.++...
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~  244 (259)
T PRK14260        173 LMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN  244 (259)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcC
Confidence            589999999999999999999887667899999999999966 99999997     5999999998887543

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=86.73  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|+++|+++.+.. ||++++|++|+++..+++.++..
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            5899999999999999988887765 48899999999988865 99999999999999888877654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2.7e-15  Score=87.46  Aligned_cols=66  Identities=23%  Similarity=0.377  Sum_probs=58.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      ||||||++||+..+..+.+.+.++..+.|+|+++|++..+.. +|++++|++|++...++..++...
T Consensus       186 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  252 (276)
T PRK14271        186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS  252 (276)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            689999999999999999988877656899999999998865 999999999999999988877654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1.1e-15  Score=86.00  Aligned_cols=66  Identities=26%  Similarity=0.379  Sum_probs=59.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      .||||||+||...+..+..+.++.+ ++..++.|-||++.... ||+++.|.+|+++..|.+.+.++.
T Consensus       164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~  231 (259)
T COG4559         164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD  231 (259)
T ss_pred             EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence            4899999999999999999888875 48999999999999966 999999999999999999887753

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2.8e-15  Score=86.66  Aligned_cols=68  Identities=16%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      +|||||++||+..+..+.+.+.++..+.|+|+++|++..+.. |++++++++|++...|+..++...+.
T Consensus       176 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~  244 (257)
T PRK14246        176 LMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPK  244 (257)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            589999999999999999999887667999999999999855 99999999999999998887765433

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.61  E-value=1.6e-15  Score=87.59  Aligned_cols=65  Identities=28%  Similarity=0.388  Sum_probs=57.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++.  .+.|+|++||++..+.. ||++++|.+|+++..+++.++..
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence            5899999999999999999888765  37899999999999865 99999999999998888766543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.61  E-value=1.8e-15  Score=83.25  Aligned_cols=57  Identities=23%  Similarity=0.378  Sum_probs=51.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.+..++.|+|+++|+++.+..+|+++++++|++.+.
T Consensus       121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~  177 (178)
T cd03247         121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQ  177 (178)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            589999999999999999999887668899999999998877999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=2.9e-15  Score=85.77  Aligned_cols=64  Identities=23%  Similarity=0.416  Sum_probs=57.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+.+... +.|+|+++|++..+.. +|++++|.+|++...+++.++.
T Consensus       164 ilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        164 LFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            68999999999999999999987754 8999999999999865 9999999999999988877654

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.61  E-value=1.8e-15  Score=87.31  Aligned_cols=64  Identities=25%  Similarity=0.356  Sum_probs=57.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+.+..+ +.|+|+++|+++.+.. ||++++|++|+++..|+..++.
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            68999999999999999999887754 7899999999999965 9999999999999988877654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.4e-15  Score=87.12  Aligned_cols=65  Identities=18%  Similarity=0.371  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+.....+.+.+.+...+.|+|++||+++.+.. ||+++++++|++...|+..++..
T Consensus       184 llDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  249 (265)
T PRK14252        184 LFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI  249 (265)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            589999999999999999998887667899999999999965 99999999999999998877754

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.61  E-value=1.2e-15  Score=86.50  Aligned_cols=57  Identities=35%  Similarity=0.412  Sum_probs=51.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.+..+  +.|+|++||+++.+.. ||+++++++|++...
T Consensus       168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  227 (228)
T cd03257         168 IADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE  227 (228)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence            68999999999999999999987753  7899999999999875 999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.61  E-value=1.5e-15  Score=85.28  Aligned_cols=58  Identities=31%  Similarity=0.434  Sum_probs=51.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+...+.+.. .+.|+|++||++..+.. +|++++|++|+++..|
T Consensus       149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         149 ILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            5899999999999999999888765 48899999999998865 9999999999987643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.61  E-value=2.7e-15  Score=86.31  Aligned_cols=66  Identities=23%  Similarity=0.360  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+.. . +.|+|+++|+++.+.. +|++++|++|+++..++..++...
T Consensus       171 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~  239 (253)
T TIGR02323       171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD  239 (253)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence            5899999999999999999888764 3 7899999999999875 999999999999999888776543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1.3e-15  Score=89.22  Aligned_cols=70  Identities=23%  Similarity=0.286  Sum_probs=61.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +||||.++||+..+..+...+....  .+.|+++||||.+++.. +|+|++|++|+|...|++.++...+...
T Consensus       160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~  232 (345)
T COG1118         160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR  232 (345)
T ss_pred             eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence            5899999999999999988887764  38999999999999965 9999999999999999999987655553

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.61  E-value=2.4e-15  Score=86.68  Aligned_cols=66  Identities=27%  Similarity=0.390  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+..+. . +.|+|+++|+++.+.. ||+++++++|++...++..++...
T Consensus       163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  231 (254)
T PRK10418        163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA  231 (254)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            6899999999999999999888764 3 7899999999999865 999999999999999988877543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.8e-15  Score=86.80  Aligned_cols=67  Identities=22%  Similarity=0.327  Sum_probs=59.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe--------CceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ--------AGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~--------~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.++.++.|+|+++|+++.+.. ||++++|+        +|++++.|+..++...+
T Consensus       172 llDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~~  247 (261)
T PRK14263        172 LLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP  247 (261)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhCC
Confidence            589999999999999999999887667899999999998865 99999996        89999999988876543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.8e-15  Score=86.57  Aligned_cols=66  Identities=17%  Similarity=0.341  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe------CceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ------AGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~------~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...++|+|+++|++..+.. ||+++++.      +|++++.+++.++...
T Consensus       171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~  243 (258)
T PRK14241        171 LMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN  243 (258)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhC
Confidence            589999999999999999999887667899999999999865 99999996      7999999988877543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.61  E-value=2e-15  Score=87.35  Aligned_cols=63  Identities=24%  Similarity=0.342  Sum_probs=56.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+.....+.+.+....  .+.|+|++||+++.+.. ||+++++.+|++...|++.++
T Consensus       175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            6899999999999999999998875  37899999999998755 999999999999999988775

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=2.1e-15  Score=86.93  Aligned_cols=64  Identities=20%  Similarity=0.367  Sum_probs=56.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|++||+++.+.. ||+++++++|++...+++.++.
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            6899999999999999999988764 48899999999999865 9999999999999888877654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=2.9e-15  Score=87.57  Aligned_cols=65  Identities=22%  Similarity=0.355  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+..+..+.+.+.+...  +.|+|++||+++.+..||++++|++|++++.|++.++..
T Consensus       166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            68999999999999999999987643  789999999999886699999999999999998776543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.61  E-value=2.5e-15  Score=87.23  Aligned_cols=65  Identities=28%  Similarity=0.301  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+...  +.|+|++||++..+.. ||+++++++|++...|++.++..
T Consensus       174 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  241 (268)
T PRK10419        174 ILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT  241 (268)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence            68999999999999999999887643  7899999999999975 99999999999999998877654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.4e-15  Score=96.52  Aligned_cols=65  Identities=22%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+..+..+.+++..+. + +.|+|++||++..+.. ||++++|++|+++..|++.++..
T Consensus       191 llDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~  258 (623)
T PRK10261        191 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH  258 (623)
T ss_pred             EEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence            6899999999999999999998874 3 8899999999999865 99999999999998888777654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=3.5e-15  Score=85.75  Aligned_cols=66  Identities=17%  Similarity=0.291  Sum_probs=59.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+.....+.+.+.+...+.|+|+++|++..+.. +++++++++|++...|++.++...
T Consensus       169 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14266        169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN  235 (250)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence            589999999999999999999887668899999999999876 999999999999999998887544

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.60  E-value=2.8e-15  Score=84.15  Aligned_cols=59  Identities=29%  Similarity=0.498  Sum_probs=53.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+.....+.+.+.....+.|+|++||++..+..+|++++|++|++...|+
T Consensus       148 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         148 VLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH  206 (207)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence            58999999999999999999988766899999999999886699999999999987664

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.60  E-value=2.7e-15  Score=92.97  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=56.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+..+.+ +.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus       158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            58999999999999999999987754 7899999999999866 9999999999999888876654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=2.3e-15  Score=87.21  Aligned_cols=65  Identities=25%  Similarity=0.380  Sum_probs=57.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|+++..++..++..
T Consensus       170 lLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            6899999999999999999998774 3 7899999999999865 99999999999998888776543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=1.3e-15  Score=94.72  Aligned_cols=63  Identities=14%  Similarity=0.256  Sum_probs=55.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+++..+. .+.|+|++||+++++.. ||++++|++|+++..++..++
T Consensus       428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            6899999999999999999988764 48899999999999866 999999999999888776554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.60  E-value=2.7e-15  Score=93.71  Aligned_cols=65  Identities=28%  Similarity=0.337  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+.....+.+++.+..  .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       179 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  246 (529)
T PRK15134        179 IADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS  246 (529)
T ss_pred             EEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence            5899999999999999999998764  37899999999999865 99999999999999888877644

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.60  E-value=1.9e-15  Score=86.00  Aligned_cols=58  Identities=24%  Similarity=0.377  Sum_probs=51.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~   58 (79)
                      +|||||++||+.....+.+.+.... .+.|+|++||+++.+..||++++|      ++|+++++|
T Consensus       162 llDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         162 VLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            6899999999999999998887764 488999999999987669999999      889988765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2.8e-15  Score=86.87  Aligned_cols=64  Identities=22%  Similarity=0.299  Sum_probs=56.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|+++|++..+.. ||+++++++|++...|++.++.
T Consensus       166 llDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        166 LLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            58999999999999999999887743  7899999999998865 9999999999999988877654

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.60  E-value=2.1e-15  Score=85.12  Aligned_cols=57  Identities=21%  Similarity=0.354  Sum_probs=51.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.... .++|+|++||++..+.. +|+++++++|++...
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~  217 (218)
T cd03266         159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE  217 (218)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence            6899999999999999999998774 48899999999998865 999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.60  E-value=1.9e-15  Score=85.03  Aligned_cols=58  Identities=28%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.++.  .+.|+|++||++..+.. +++++++++|++++.|
T Consensus       153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            5899999999999999999988764  37899999999998866 9999999999987754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.60  E-value=1.8e-15  Score=85.28  Aligned_cols=58  Identities=28%  Similarity=0.355  Sum_probs=51.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.+.. + +.|+|++||+++.+.. ||+++++++|++...|
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            6899999999999999999988764 3 7899999999999865 9999999999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.59  E-value=2.8e-15  Score=84.69  Aligned_cols=57  Identities=30%  Similarity=0.424  Sum_probs=51.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|++||+++.+..||+++++++|+++..
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         163 LLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence            689999999999999999999887656899999999997755999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.59  E-value=3.1e-15  Score=87.13  Aligned_cols=65  Identities=25%  Similarity=0.308  Sum_probs=57.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|+++|+++.+.. ||+++++.+|+++..++..++..
T Consensus       177 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT  244 (272)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence            58999999999999999999987643  7899999999998865 99999999999999888776643

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.59  E-value=7.1e-15  Score=84.02  Aligned_cols=66  Identities=23%  Similarity=0.308  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.+...  ++|+|++||++..+.. ||+++++++|++.+.++...+...
T Consensus       153 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  221 (237)
T TIGR00968       153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH  221 (237)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence            58999999999999999999887643  7899999999998865 999999999999998887776543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.59  E-value=2e-15  Score=85.98  Aligned_cols=63  Identities=24%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.+..  .+.|+|++||+++.+.. ||++++|++|+++..|+...+
T Consensus       137 lLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       137 LLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            6899999999999999999888764  37899999999998865 999999999999887765433

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.59  E-value=3.3e-15  Score=84.64  Aligned_cols=62  Identities=26%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||++..+.. ||+++.+++|++...+++.+
T Consensus       147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            5899999999999999999998775 47899999999999865 99999999999998887653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.59  E-value=4.9e-15  Score=84.45  Aligned_cols=66  Identities=24%  Similarity=0.334  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++.+  +.|+|+++|++..+.. ||+++++++|++...++..+....
T Consensus       153 llDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            68999999999999999999987753  8899999999999865 999999999999998887776544

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=5.4e-15  Score=85.54  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=58.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC-----ceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA-----GQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~-----G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+.....+.+.+....  .+.|+|++||++..+.. ||++++|++     |+++..+++.++...
T Consensus       173 lLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~  246 (261)
T PRK14258        173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS  246 (261)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence            6899999999999999999888753  48999999999999865 999999999     999999998887654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.59  E-value=3.2e-15  Score=86.22  Aligned_cols=72  Identities=32%  Similarity=0.390  Sum_probs=63.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT   72 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~   72 (79)
                      |.|||+|+||...+.++.+++..+..  +.+.+||+||+..+.. +|++.+|..|++++.|+..++..++.+-++
T Consensus       132 V~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYT  206 (268)
T COG4608         132 VADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYT  206 (268)
T ss_pred             EecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHH
Confidence            58999999999999999999887753  9999999999999977 999999999999999999888776666443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.59  E-value=2.3e-15  Score=93.53  Aligned_cols=63  Identities=21%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+++..+.. +.|+|++||+++++.. ||+++++++|+++..+...+.
T Consensus       419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            68999999999999999999887654 8899999999999966 999999999999988876554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.59  E-value=2.6e-15  Score=84.40  Aligned_cols=57  Identities=23%  Similarity=0.239  Sum_probs=51.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.++.  .+.|+|++||++..+.. ||+++++++|++...
T Consensus       151 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            6899999999999999999998774  37899999999999866 999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.59  E-value=3.4e-15  Score=84.70  Aligned_cols=64  Identities=22%  Similarity=0.377  Sum_probs=56.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||+++++ +|+++..++..++..
T Consensus       136 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       136 LLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            5899999999999999999998775 48899999999998865 9999999 799999888877654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.59  E-value=7.4e-15  Score=85.39  Aligned_cols=65  Identities=23%  Similarity=0.417  Sum_probs=56.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.++..  +.|+|+++|+++.+..||++++|++|++...++..++..
T Consensus       165 lLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence            68999999999999999999987753  489999999999886699999999999998887766543

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.58  E-value=5.8e-15  Score=84.30  Aligned_cols=66  Identities=24%  Similarity=0.407  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+...+.+...  +.|+|++||++..+.. ||++++|++|+++..+++..+...
T Consensus       152 llDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         152 LLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            58999999999999999998887643  8899999999999865 999999999999998887766543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.8e-15  Score=93.26  Aligned_cols=63  Identities=21%  Similarity=0.329  Sum_probs=56.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.++.. +.|+|++||++..+.. ||+++++++|+++..|++.++
T Consensus       168 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        168 IMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence            68999999999999999999887754 8899999999999965 999999999999888877654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.58  E-value=2.1e-15  Score=85.07  Aligned_cols=54  Identities=22%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            5899999999999999999988764 48899999999998865 999999999864

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.58  E-value=6e-15  Score=84.61  Aligned_cols=62  Identities=24%  Similarity=0.381  Sum_probs=55.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc--CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+.....+.+.+..+.. ++|+|++||++..+..  +|+++++++|++...|++..
T Consensus       168 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~  232 (248)
T PRK09580        168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL  232 (248)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence            68999999999999999998887654 7899999999998865  79999999999999888764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.58  E-value=2.7e-15  Score=84.11  Aligned_cols=55  Identities=25%  Similarity=0.434  Sum_probs=49.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~   55 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++
T Consensus       149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            5899999999999999999998774 58899999999999865 9999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.58  E-value=5.5e-15  Score=84.98  Aligned_cols=61  Identities=20%  Similarity=0.419  Sum_probs=54.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc--CCEEEEEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~   61 (79)
                      +|||||++||+.....+.+.+.++. .+.|+|++||+++.+..  +|+++++++|+++..|++.
T Consensus       174 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~  237 (252)
T CHL00131        174 ILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE  237 (252)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence            6899999999999999999998775 48999999999998853  7999999999999988776

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.58  E-value=4.8e-15  Score=92.40  Aligned_cols=64  Identities=17%  Similarity=0.357  Sum_probs=56.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      ||||||++||+.....+.+.+..+. . +.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus       450 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  516 (520)
T TIGR03269       450 ILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV  516 (520)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            6899999999999999999988764 3 7899999999999866 9999999999999888776553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=9.9e-15  Score=85.47  Aligned_cols=66  Identities=20%  Similarity=0.377  Sum_probs=57.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEE-EEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIV-VLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~-~l~~G~i~~~~~~~~~~~~   66 (79)
                      ||||||++||+.....+.+.+.++.++.|+|+++|+++.+.. +|+++ ++++|+++..+++.++...
T Consensus       203 LLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~  270 (285)
T PRK14254        203 LMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN  270 (285)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence            689999999999999999999888666899999999999866 99975 5799999998888776543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.58  E-value=3.7e-15  Score=90.24  Aligned_cols=73  Identities=32%  Similarity=0.420  Sum_probs=64.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL   73 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~   73 (79)
                      |=||||++||...+.++.+++..+.  .|.++++||||+..+.. +|+|++|.+|++++.|....++..+.+-++.
T Consensus       180 IADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr  255 (534)
T COG4172         180 IADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTR  255 (534)
T ss_pred             eecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHH
Confidence            3499999999999999999998774  39999999999999976 9999999999999999999988877775544

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.58  E-value=4e-15  Score=84.15  Aligned_cols=59  Identities=32%  Similarity=0.393  Sum_probs=51.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEe--CceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~~~   59 (79)
                      +|||||++||+..+..+.+.+.+..  .+.|+|+++|+++.+.. ||++++|+  +|+++..++
T Consensus       154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~  217 (220)
T cd03293         154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE  217 (220)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence            6899999999999999999988763  37899999999998865 99999999  799887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.58  E-value=4.3e-15  Score=91.75  Aligned_cols=59  Identities=25%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      |||||||+|+......+...++++. .|.++|||||.++++.. ||++.+|++|+.+...+
T Consensus       168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            6999999999999998988888876 59999999999999976 99999999999887665

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.58  E-value=4e-15  Score=83.61  Aligned_cols=57  Identities=23%  Similarity=0.394  Sum_probs=50.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|+++|++..+.. ||+++++++|++...
T Consensus       151 llDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence            6899999999999999999988764 47899999999998865 999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.58  E-value=3.3e-15  Score=93.04  Aligned_cols=64  Identities=17%  Similarity=0.254  Sum_probs=56.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      ||||||++||+..+..+.+.+..+. ++.|+|++||+++++.. ||+++++++|+++..+.+.++.
T Consensus       426 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        426 IVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             EECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            6899999999999999999988765 48899999999999966 9999999999999888765543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.58  E-value=4.4e-15  Score=92.48  Aligned_cols=64  Identities=20%  Similarity=0.351  Sum_probs=56.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (510)
T PRK15439        163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS  228 (510)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence            6899999999999999999988764 48899999999999865 9999999999999888876653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.58  E-value=4.1e-15  Score=84.09  Aligned_cols=55  Identities=18%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~   55 (79)
                      +|||||++||+..+..+.+.+..+.  .+.|+|++||+++.+..+|++++|++|+++
T Consensus       164 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            6899999999999999999998774  378999999999988669999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.57  E-value=5.1e-15  Score=81.65  Aligned_cols=57  Identities=28%  Similarity=0.417  Sum_probs=50.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+.....+.+.+.+...  +.|+|+++|+++.+.. +|+++++.+|++...
T Consensus       120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            58999999999999999999987754  7899999999999855 999999999998653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=5.5e-15  Score=84.24  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+..+..+.+.+.+..  .+.|+|++||+++.+..++++++|.+|+++..++
T Consensus       168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            5899999999999999999998764  3789999999999987777999999999987664

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.57  E-value=5.9e-15  Score=92.01  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=56.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+.++. + +.|+|++||++..+.. ||++++|++|++...|++.++.
T Consensus       191 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  257 (520)
T TIGR03269       191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV  257 (520)
T ss_pred             EeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence            6899999999999999999988773 3 8899999999999865 9999999999998888776653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.57  E-value=7.6e-15  Score=82.99  Aligned_cols=59  Identities=37%  Similarity=0.584  Sum_probs=53.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+..+..+.+.+.+...+.|+|+++|++..+..||++++|++|++...++
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            58999999999999999999988766789999999999887799999999999887654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.57  E-value=9.9e-15  Score=90.97  Aligned_cols=66  Identities=24%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      ||||||++||+..+..+.+.+.++. .++|+|+++|+++.+.. ||++++|.+|++...|++.++...
T Consensus       166 LLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~  233 (549)
T PRK13545        166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH  233 (549)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            6899999999999999988888764 48899999999999866 999999999999999988776543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.57  E-value=5.9e-15  Score=80.35  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=50.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~   56 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|+++|++..+.. +|+++++++|++.+
T Consensus       105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            5899999999999999999998774 48899999999998865 99999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=3.6e-15  Score=92.71  Aligned_cols=63  Identities=16%  Similarity=0.313  Sum_probs=55.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|++||++..+.. ||+++++++|+++..++..++
T Consensus       166 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        166 ILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence            6899999999999999999988764 47899999999999865 999999999999888776544

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.57  E-value=6.3e-15  Score=88.05  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=62.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +||||.|+||...+..+..-+.+..  .|.|.|+||||.+++.. +|++.+|++|+|...|++.++...+.+.+
T Consensus       159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~f  232 (352)
T COG3842         159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRF  232 (352)
T ss_pred             hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHH
Confidence            5899999999999988887776653  39999999999998865 99999999999999999999987776654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.57  E-value=1.3e-14  Score=98.61  Aligned_cols=74  Identities=26%  Similarity=0.359  Sum_probs=61.8

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +||||||+||+.+...+ .+++....+++|+|++||+++.+..+|+|++|++|++++.|++.++......+..++
T Consensus       763 LLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~  837 (1495)
T PLN03232        763 IFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLM  837 (1495)
T ss_pred             EEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHH
Confidence            68999999999987755 556666667899999999999888899999999999999999988876555555444

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.57  E-value=5.8e-15  Score=85.41  Aligned_cols=60  Identities=27%  Similarity=0.277  Sum_probs=52.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~   60 (79)
                      +|||||++||+..+..+.+.+.+..  .+.|+|++||+++.+.. ||+++++++|+++..++.
T Consensus       156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~  218 (257)
T PRK11247        156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV  218 (257)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence            6899999999999999999888763  37899999999998865 999999999999886653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.57  E-value=4.4e-15  Score=92.26  Aligned_cols=63  Identities=14%  Similarity=0.258  Sum_probs=55.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.... ++.|+|++||+++.+.. ||+++++++|+++..++..++
T Consensus       418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            6899999999999999999998775 48899999999999866 999999999999887776554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.57  E-value=5.9e-15  Score=91.51  Aligned_cols=63  Identities=17%  Similarity=0.290  Sum_probs=55.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+.....+.+.+..+. .+.|+|++||+++++.. ||++++|++|+++..++..+.
T Consensus       157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            6899999999999999999888764 48899999999999865 999999999999988876553

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.3e-14  Score=85.69  Aligned_cols=66  Identities=21%  Similarity=0.379  Sum_probs=57.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEE-EEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLI-VVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v-~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.++..+.|+|+++|+++.+.. ||++ +++++|+++..|++.++...
T Consensus       223 LLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~  290 (305)
T PRK14264        223 LMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN  290 (305)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence            689999999999999999999887667899999999999865 9996 57799999999988877543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.56  E-value=8.1e-15  Score=82.61  Aligned_cols=59  Identities=31%  Similarity=0.410  Sum_probs=52.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+..+..+.+.+.+.. . +.|+|+++|+...+.. +|++++|.+|++...|.
T Consensus       151 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       151 LLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            5899999999999999999988764 3 7899999999998865 99999999999988764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.56  E-value=7e-15  Score=83.52  Aligned_cols=58  Identities=26%  Similarity=0.356  Sum_probs=51.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+..... +.|+|+++|+++.+.. +|+++++++|++...|
T Consensus       165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            68999999999999999998887643 7899999999998865 9999999999987643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.56  E-value=7.7e-15  Score=83.86  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=51.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.++..  +.|+|++||+++.+.. +|+++++.+|++...|
T Consensus       176 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            68999999999999999999987643  7899999999998865 9999999999987643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.56  E-value=5.6e-15  Score=91.81  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=55.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..++..++
T Consensus       164 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            5899999999999999998888764 47899999999999866 999999999999887766543

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.56  E-value=4.4e-15  Score=83.80  Aligned_cols=54  Identities=30%  Similarity=0.385  Sum_probs=48.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.++..  +.|+|+++|+++.+..||++++|++|++
T Consensus       163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         163 LADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            68999999999999999999988753  7899999999988767999999999863

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.56  E-value=3.1e-14  Score=83.36  Aligned_cols=65  Identities=18%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             CCcccccCCCHHHHHHHHHH-HHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~-~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+... +.....+.|+|+++|++..+..||++++|++|++...|+..++..
T Consensus       182 iLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  247 (282)
T cd03291         182 LLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS  247 (282)
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            68999999999998877764 455555789999999999886699999999999999888877654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.55  E-value=9.3e-15  Score=90.95  Aligned_cols=60  Identities=17%  Similarity=0.353  Sum_probs=53.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~   60 (79)
                      ||||||++||+.....+.+.+..+. .+.|+|++||++..+.. ||+++++++|++...++.
T Consensus       432 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        432 IFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             EECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            6899999999999999999998764 48899999999998865 999999999999877654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.55  E-value=2.3e-14  Score=97.92  Aligned_cols=74  Identities=24%  Similarity=0.379  Sum_probs=62.0

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +||||||+||+.+...+ .+++....+++|+|++||++..+..+|+|++|++|++.+.|++.++......+..++
T Consensus       763 LLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~  837 (1622)
T PLN03130        763 IFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLM  837 (1622)
T ss_pred             EECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHH
Confidence            69999999999977655 566766667899999999999888899999999999999999998876555555444

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.55  E-value=7.1e-15  Score=91.28  Aligned_cols=62  Identities=21%  Similarity=0.364  Sum_probs=54.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+.....+.+.+.++. .+.|+|++||+++++.. ||++++|++|+++..++..+
T Consensus       164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence            5899999999999999999988764 48899999999999966 99999999999988776543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.55  E-value=1.8e-14  Score=80.67  Aligned_cols=62  Identities=31%  Similarity=0.473  Sum_probs=54.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccc--cCCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQ--NADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~--~~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+.....+.+.+.+..+ ++|+|+++|+++.+.  .+|+++++++|++...+ +.++
T Consensus       127 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~  191 (200)
T cd03217         127 ILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL  191 (200)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence            58999999999999999999887754 789999999999886  69999999999999887 4334

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.55  E-value=1.1e-14  Score=82.67  Aligned_cols=56  Identities=23%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~   56 (79)
                      +|||||++||+..+..+.+.+.+.. . +.|+|+++|+++.+..+|+++++++|++.+
T Consensus       169 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        169 FADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE  226 (228)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            6899999999999999999998764 3 789999999999886699999999999865

>PRK10908 cell division protein FtsE; Provisional

Probab=99.55  E-value=9.5e-15  Score=82.73  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=49.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~   56 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++.
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            6899999999999999999888764 47899999999999976 99999999999754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.55  E-value=7.1e-15  Score=80.64  Aligned_cols=54  Identities=35%  Similarity=0.494  Sum_probs=48.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+..+.+ +.|+|+++|+++.+..||++++|++|++
T Consensus       119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            58999999999999999999987754 8899999999998866999999999863

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.55  E-value=1.3e-14  Score=80.77  Aligned_cols=58  Identities=22%  Similarity=0.371  Sum_probs=50.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc-c-ccCCEEEEEeC-ceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLST-V-QNADLIVVLQA-GQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.+... ++|+|++||+++. + ..||++++|++ |+++..|
T Consensus       131 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            58999999999999999999887654 8899999999984 5 45999999998 9987643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.55  E-value=1.5e-14  Score=80.61  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcc-cccc-CCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TVQN-ADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~-~~~~-~d~v~~l~~G~i~~~   57 (79)
                      +|||||++||+..+..+.+.+.++. .++|+|+++|++. .+.. +|+++++++|++...
T Consensus       134 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         134 FLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence            5899999999999999999998775 4899999999996 5654 999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.55  E-value=6.7e-15  Score=82.72  Aligned_cols=53  Identities=23%  Similarity=0.433  Sum_probs=47.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+..+..+.+.+.++.. +.|+|++||+++.+.. ||++++|++|+
T Consensus       157 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            68999999999999999999987754 8899999999999876 99999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.55  E-value=1.1e-14  Score=82.04  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=48.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~   56 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++| +++
T Consensus       155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~  211 (213)
T cd03235         155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA  211 (213)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence            6899999999999999999988765 58899999999999865 9999999876 444

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.54  E-value=1.4e-14  Score=83.95  Aligned_cols=60  Identities=30%  Similarity=0.423  Sum_probs=53.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~   60 (79)
                      +|||||++||+.....+.+.+.... .+.|+|+++|+++.+..+|+++.|      ++|+++..|++
T Consensus       195 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         195 ILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            6899999999999999998888765 489999999999988779999999      78999888753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.1e-14  Score=90.23  Aligned_cols=61  Identities=15%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~   61 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|++||+++++.. ||+++++++|+++..++..
T Consensus       414 lLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        414 MLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             EEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence            6899999999999999999988764 48999999999999966 9999999999998766553

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.54  E-value=7.6e-15  Score=82.61  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|++||++..+.. ||++++|++|++
T Consensus       159 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         159 IADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            5899999999999999999998764 48899999999999875 999999999863

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.8e-14  Score=83.86  Aligned_cols=63  Identities=21%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|+++|+++.+.. ||+++.+ +|++...|++.++.
T Consensus       165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~  229 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF  229 (272)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence            5899999999999999999998775 48899999999998855 9999777 89999888877654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.54  E-value=1.1e-14  Score=90.42  Aligned_cols=60  Identities=12%  Similarity=0.219  Sum_probs=53.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~   60 (79)
                      +|||||++||+..+..+.+++..+. .+.|+|++||+++++.. ||+++++++|+++...+.
T Consensus       426 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~  487 (500)
T TIGR02633       426 ILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN  487 (500)
T ss_pred             EEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence            6899999999999999998888764 48899999999999966 999999999999876644

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.54  E-value=8.5e-15  Score=82.46  Aligned_cols=53  Identities=25%  Similarity=0.374  Sum_probs=47.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+..+..+.+.+.++. .++|+|++||+++.+.. ||++++|++|+
T Consensus       160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            6899999999999999999998774 48999999999999876 99999999874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.54  E-value=2.8e-14  Score=96.86  Aligned_cols=75  Identities=41%  Similarity=0.642  Sum_probs=64.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCc--------------------------
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAG--------------------------   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G--------------------------   52 (79)
                      +||||||+||+.++..+.+.+..+.  .++|+|+++|+++.+..+|++++|++|                          
T Consensus       602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~  681 (1466)
T PTZ00265        602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN  681 (1466)
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence            6999999999999999999998875  489999999999988779999999986                          


Q ss_pred             ---------------------eEeeecChhHHhh-ccchHHHHHh
Q psy10474         53 ---------------------QIVEMGNHKSLLA-KKGHYWTLMN   75 (79)
Q Consensus        53 ---------------------~i~~~~~~~~~~~-~~~~~~~~~~   75 (79)
                                           +++++|++.++.. ..+.++.+++
T Consensus       682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~  726 (1466)
T PTZ00265        682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMIN  726 (1466)
T ss_pred             ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHh
Confidence                                 4899999999876 4566666653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.54  E-value=1.9e-14  Score=81.70  Aligned_cols=58  Identities=26%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCc-ccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRL-STVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~-~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|+++|++ ..+.. +|+++++++|+++..|
T Consensus       166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            6899999999999999999988764 478999999998 46654 9999999999987654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.53  E-value=2.2e-14  Score=99.35  Aligned_cols=65  Identities=22%  Similarity=0.268  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+++.+..+++|+|++||+++++.. ||++++|++|++...|++..+.+
T Consensus      1084 LLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257      1084 VLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence            589999999999999999999888778999999999999976 99999999999999998876643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=1.7e-14  Score=83.33  Aligned_cols=59  Identities=27%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEe--CceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~~~   59 (79)
                      +|||||++||+..+..+.+.+.+..  .++|+|++||+++.+.. ||++++|+  +|+++..++
T Consensus       151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~  214 (255)
T PRK11248        151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP  214 (255)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence            6899999999999999999998763  38999999999998865 99999998  599887654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.5e-14  Score=86.02  Aligned_cols=71  Identities=23%  Similarity=0.371  Sum_probs=62.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +||||.|+||+..+..+...+..+.+  +.|+|+||||..++.. +|++.+|.+|++...|++.++...+.+.+
T Consensus       156 L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f  229 (338)
T COG3839         156 LLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF  229 (338)
T ss_pred             EecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence            58999999999999888887776643  8899999999998855 99999999999999999999987776654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.53  E-value=1.2e-14  Score=81.80  Aligned_cols=54  Identities=26%  Similarity=0.428  Sum_probs=48.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.++.. +.|+|++||++..+.. ||++++|++|++
T Consensus       158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            68999999999999999999988754 7899999999999865 999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.52  E-value=1.3e-14  Score=80.11  Aligned_cols=54  Identities=20%  Similarity=0.354  Sum_probs=48.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|+++|+++.+.. ||+++++++|++
T Consensus       127 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             EECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            5899999999999999999998774 47899999999998866 999999999863

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.52  E-value=2.4e-14  Score=89.02  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+.....+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..+.
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            6899999999999999999888765 48899999999999866 99999999999876543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.52  E-value=4.7e-14  Score=79.68  Aligned_cols=65  Identities=18%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +||||++++|+..+..+...+....+++++|+++|++..+.. ||++++|.+|+++..++.....+
T Consensus       127 llDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  192 (213)
T PRK15177        127 IADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA  192 (213)
T ss_pred             EECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence            589999999999998888877554456789999999999865 99999999999999888766543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.52  E-value=2.7e-14  Score=98.98  Aligned_cols=64  Identities=14%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..++.+++.+.+.. +++|+|++||+++++.. ||++++|.+|++...|++.++.
T Consensus      2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257      2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            5899999999999999999998764 48999999999999976 9999999999999999887764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.52  E-value=2.2e-14  Score=81.41  Aligned_cols=54  Identities=26%  Similarity=0.393  Sum_probs=49.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +-||||++||..+...+..++.... + +.|+|+|||++..+..|||++.+.+|++
T Consensus       165 lADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         165 LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI  220 (226)
T ss_pred             EeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence            3599999999999999999998874 3 8899999999999999999999999984

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.52  E-value=2.5e-14  Score=78.33  Aligned_cols=53  Identities=49%  Similarity=0.723  Sum_probs=48.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+.+.+.+..+++|+|++||+++.+..||+++++++|+
T Consensus       119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            58999999999999999999988766789999999999886699999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.52  E-value=3.3e-14  Score=81.99  Aligned_cols=64  Identities=17%  Similarity=0.229  Sum_probs=54.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.+.. . +.|+|++||+++.+.. ||++++++ |+++..|++.++..
T Consensus       143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~  209 (251)
T PRK09544        143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL  209 (251)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence            5899999999999999999888764 3 7899999999999865 99999996 57888888776643

>PLN03211 ABC transporter G-25; Provisional

Probab=99.52  E-value=3.6e-14  Score=90.63  Aligned_cols=64  Identities=25%  Similarity=0.321  Sum_probs=56.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccc-cc-cCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLST-VQ-NADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.++..+.+.+..+. .++|+|+++|+++. +. .+|+++++++|+++..|+..++.
T Consensus       229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~  295 (659)
T PLN03211        229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM  295 (659)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence            5899999999999999999998775 48999999999984 54 49999999999999999877654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.51  E-value=2e-14  Score=78.83  Aligned_cols=54  Identities=28%  Similarity=0.419  Sum_probs=48.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.+.. ++.|+|++||++..+.. +|+++++++|++
T Consensus       118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            5899999999999999999998875 37899999999998875 999999999863

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.51  E-value=2.6e-14  Score=81.11  Aligned_cols=54  Identities=56%  Similarity=0.639  Sum_probs=48.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+..+..+.|+|++||+++.+..||+++++++|++
T Consensus       173 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         173 ILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            689999999999999999999887667899999999998866999999998863

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.51  E-value=6.1e-14  Score=76.59  Aligned_cols=63  Identities=24%  Similarity=0.433  Sum_probs=57.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++|||.-...+..++.++.. |.|-+++||..+.+.. +.+|+.|.+|+|++.|+.+-+
T Consensus       164 lfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         164 LFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             eecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            58999999999999999999988876 9999999999999966 999999999999999987655

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.50  E-value=4.6e-14  Score=88.26  Aligned_cols=63  Identities=22%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~   65 (79)
                      +|||||++||+.....+.+.+...  +.|+|++||+++.+.. ||+++++++|+++ ..|++.++..
T Consensus       461 lLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  525 (530)
T PRK15064        461 VMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR  525 (530)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence            689999999999999999988876  4599999999999876 9999999999997 6777776643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.50  E-value=1.2e-13  Score=94.26  Aligned_cols=73  Identities=27%  Similarity=0.454  Sum_probs=60.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHH---hcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALES---ACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL   73 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~---~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~   73 (79)
                      +||||||+||+.+...+.+.+..   ..+++|+|++||+++.+..+|++++|++|++...|++.++......+..+
T Consensus       783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l  858 (1522)
T TIGR00957       783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEF  858 (1522)
T ss_pred             EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHH
Confidence            58999999999998888776643   34589999999999998789999999999999999998876544444443

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.5e-14  Score=81.76  Aligned_cols=52  Identities=27%  Similarity=0.300  Sum_probs=46.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G   52 (79)
                      +||||++|||+.++..+++.+.+.. + ++|+++|||+.+++.. +|||++|.++
T Consensus       153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            5899999999999999988877654 3 8999999999999965 9999999984

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=7.9e-14  Score=87.20  Aligned_cols=62  Identities=16%  Similarity=0.281  Sum_probs=53.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+.+  .+.|+|+++|++..+.. ||+++++++|++. ..|++.++.
T Consensus       178 lLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        178 LLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             EEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            58999999999999999888864  47899999999999866 9999999999994 678776654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=6.8e-14  Score=89.16  Aligned_cols=61  Identities=13%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~   63 (79)
                      ||||||++||+.....+.+.+...  +.|+|+|||++.++.. ||+++++.+|++. ..|++.+.
T Consensus       453 lLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        453 LLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            699999999999999999999876  3599999999999976 9999999999997 67777765

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.48  E-value=9e-14  Score=91.33  Aligned_cols=65  Identities=20%  Similarity=0.384  Sum_probs=58.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+.....+...+.++.. |.|+|+|+|+++.+..+|++++|      ++|+++..|++.++..
T Consensus       514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~  585 (943)
T PRK00349        514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK  585 (943)
T ss_pred             EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence            69999999999999999999887754 89999999999988779999999      8899999998887744

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.48  E-value=1.1e-13  Score=87.99  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcc-cc-ccCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.+...+.+.+..... ++|+|+++|++. .+ ..+|++++|++|++++.|++.++.
T Consensus       189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~  255 (617)
T TIGR00955       189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV  255 (617)
T ss_pred             EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence            58999999999999999998887754 899999999996 45 459999999999999999987753

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.47  E-value=5.1e-14  Score=77.63  Aligned_cols=55  Identities=20%  Similarity=0.321  Sum_probs=48.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~   55 (79)
                      +|||||++||+.....+.+.+.+.. .+.|+|++||++..+..+|++++|.+|+..
T Consensus       112 LlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~  167 (176)
T cd03238         112 ILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGK  167 (176)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCC
Confidence            5899999999999999999888765 489999999999987669999999877643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.47  E-value=1.4e-13  Score=86.42  Aligned_cols=58  Identities=19%  Similarity=0.293  Sum_probs=50.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~   58 (79)
                      +||||||+||+.+...+.+.+....  .++|+|+++|+++.+..+|+++++++|++.+..
T Consensus       472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence            6899999999999998887776443  489999999999887779999999999998763

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.46  E-value=1.4e-13  Score=90.25  Aligned_cols=64  Identities=20%  Similarity=0.401  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~   64 (79)
                      ||||||++||+.....+.+.+.++.. |.|+|+|+|+++.+..||+++.|      ++|+++..|++.++.
T Consensus       512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            69999999999999999999887754 89999999999988779999999      899999999887764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.46  E-value=2.9e-13  Score=92.22  Aligned_cols=66  Identities=24%  Similarity=0.302  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHH-HHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQA-ALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~-~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +||||+|+||+.+...+.+ ++....+++|+|++||++..+..+|++++|++|++...|++.++...
T Consensus       571 lLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~  637 (1490)
T TIGR01271       571 LLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK  637 (1490)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            5899999999999888876 46666679999999999999877999999999999999998887654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.46  E-value=6.2e-14  Score=79.63  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=50.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEe-CceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQ-AGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~-~G~i~~~~~~   60 (79)
                      +|||||++||+.....+.+.+.++.  .+.|+|+++|+++.+..||++++++ ++..+.+|++
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhh
Confidence            6899999999999999999988764  3789999999999886699999995 5555555654

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.46  E-value=7.6e-14  Score=76.87  Aligned_cols=53  Identities=36%  Similarity=0.470  Sum_probs=47.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+..+..+.+.+.+...  +.|+|+++|++..+.. ||++++|++|+
T Consensus       123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            58999999999999999999887654  6899999999999975 99999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.46  E-value=2e-13  Score=85.83  Aligned_cols=57  Identities=26%  Similarity=0.401  Sum_probs=48.8

Q ss_pred             CCcccccCCCHHHHHHHHHHH-HHh-cCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAAL-ESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~-~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~   57 (79)
                      |||||||+||+.++..+.+.+ ... ..++|+|+++|+++.+..+|+++++++|++++.
T Consensus       493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            689999999999999887654 333 358999999999988777999999999998764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.45  E-value=2.4e-13  Score=85.51  Aligned_cols=61  Identities=26%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~   63 (79)
                      +|||||++||+.....+.+.+....  .|+|++||+++.+.. ||++++|++|+++ ..|++...
T Consensus       186 LLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  248 (556)
T PRK11819        186 LLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW  248 (556)
T ss_pred             EEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence            6899999999999999999888763  599999999999976 9999999999986 66776654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.45  E-value=9.4e-14  Score=79.03  Aligned_cols=63  Identities=33%  Similarity=0.339  Sum_probs=56.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          2 FRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      =|||+++|||.+...+++.+....  .|.|+|+..|+++.+.. |+|++-|++|+++..|++.++.
T Consensus       171 ADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~  236 (258)
T COG3638         171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT  236 (258)
T ss_pred             cCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence            399999999999999999888764  48999999999999966 9999999999999999987753

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.44  E-value=1.8e-13  Score=77.46  Aligned_cols=54  Identities=26%  Similarity=0.378  Sum_probs=47.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+...+....  .++|+|+++|+++....||++++|.+|++
T Consensus       164 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       164 LADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            5899999999999999999988765  37999999999986555999999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.44  E-value=3.1e-13  Score=84.95  Aligned_cols=62  Identities=27%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+...  +.|+|++||++..+.. ||+++++++|+++ ..|++.++.
T Consensus       184 LLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~  247 (552)
T TIGR03719       184 LLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL  247 (552)
T ss_pred             EEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence            689999999999999999888765  3599999999999976 9999999999975 667776643

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.43  E-value=1.3e-13  Score=79.99  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      .|||||-+||...+..+.+++.+..  .+.||++.||+++.+.. |++|+.++.|+++..|+.+.+..
T Consensus       179 fLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~  246 (325)
T COG4586         179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE  246 (325)
T ss_pred             EecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence            3899999999999999999998875  49999999999999966 99999999999999888776544

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.43  E-value=3.7e-13  Score=75.46  Aligned_cols=58  Identities=14%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccC-cccccc-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHR-LSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~-~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+..+..+.+.+.+..+  +.++|+++|+ .+.+.. ||++++|++|+++..|
T Consensus       141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            58999999999999999999988753  5676776655 466654 9999999999987643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.43  E-value=2.4e-13  Score=72.83  Aligned_cols=51  Identities=25%  Similarity=0.326  Sum_probs=45.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +||||+++||+..+..+.+.+.++  +.|+++++|+++.+.. ||+++++++|+
T Consensus        93 llDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          93 LLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            589999999999999999988876  5799999999999865 99999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.42  E-value=4.7e-13  Score=85.30  Aligned_cols=62  Identities=27%  Similarity=0.376  Sum_probs=53.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee-ecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE-MGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+..+  +.|+|+|||+..++.. |++++.+++|++.. .|++....
T Consensus       179 LLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~  242 (635)
T PRK11147        179 LLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL  242 (635)
T ss_pred             EEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence            689999999999999999998876  3599999999999976 99999999999974 57776643

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.42  E-value=3.9e-13  Score=85.84  Aligned_cols=64  Identities=23%  Similarity=0.327  Sum_probs=57.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+.++. .+.|+|+++|+++.+..||+++++++|++.+.|+.++..
T Consensus       167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence            5899999999999999999998775 489999999999987669999999999999988877553

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.41  E-value=5.3e-13  Score=74.70  Aligned_cols=70  Identities=13%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +||||++++||.....++.++..+.. +..+++.-|...+... |||.+++..|++...|++.++..++...
T Consensus       162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr  233 (243)
T COG1137         162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVR  233 (243)
T ss_pred             EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhh
Confidence            58999999999999999999988864 8899999999988865 9999999999999999999998765543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=6.2e-13  Score=84.83  Aligned_cols=62  Identities=19%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~   64 (79)
                      +|||||++||+.....+...+...  +.|+|+|||+..++.. |++++.+++|++. ..|++....
T Consensus       172 LLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~  235 (638)
T PRK10636        172 LLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE  235 (638)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence            699999999999999988888765  5699999999999976 9999999999986 457766553

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.41  E-value=5.8e-13  Score=90.39  Aligned_cols=61  Identities=23%  Similarity=0.355  Sum_probs=53.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccc--ccCCEEEEEeCc-eEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTV--QNADLIVVLQAG-QIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~--~~~d~v~~l~~G-~i~~~~~~~   61 (79)
                      +||||||+||+.++..+.+.+++.+ .++|+|+++|+++..  ..+|++++|++| ++++.|+..
T Consensus       925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence            5899999999999999999998874 589999999999863  459999999987 999988764

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.41  E-value=7.7e-13  Score=87.05  Aligned_cols=68  Identities=26%  Similarity=0.399  Sum_probs=60.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~   68 (79)
                      ||||||++||+.....+.+.+.++. .+.|+|+++|+++.+..+|+++.|      .+|+++..|++.++...+.
T Consensus       856 ILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~  930 (943)
T PRK00349        856 ILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA  930 (943)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence            6899999999999999999888775 488999999999988779999999      6899999999988875443

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.40  E-value=6.6e-13  Score=76.49  Aligned_cols=53  Identities=15%  Similarity=0.303  Sum_probs=46.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+..+..+.+.+.+..  .++|+|++||++..+.. ||++++++++.
T Consensus       138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~  193 (246)
T cd03237         138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP  193 (246)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence            6899999999999999999988774  37899999999999875 99999997643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.40  E-value=6.2e-13  Score=72.61  Aligned_cols=51  Identities=31%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      +|||||++||+..+..+.+.+...  +.|+|++||++.....||+++++++|.
T Consensus       114 llDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223         114 FLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             EEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            589999999999999999888876  589999999998665699999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.39  E-value=4.5e-13  Score=73.95  Aligned_cols=55  Identities=24%  Similarity=0.293  Sum_probs=47.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~   55 (79)
                      +|||||++||+..+..+.+.+.+.. + +.|+|+++|++..+.. ||++++++++...
T Consensus        94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~  151 (177)
T cd03222          94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV  151 (177)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence            5899999999999999999888764 3 4899999999999875 9999999887554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.39  E-value=7.2e-13  Score=82.27  Aligned_cols=58  Identities=16%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-C-CEEEEEccCccccc-c-CCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-G-RTVLMIAHRLSTVQ-N-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~-~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~~   58 (79)
                      +|||||++||+.....+.+.+.+... + .|+|++||+++.+. . ++++++|++|+++...
T Consensus       424 lLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            58999999999999999999988753 4 46999999999885 3 7999999999987643

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.39  E-value=5.9e-13  Score=81.86  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=52.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      ||||||+-|-|.....+...+..+. +|+|+|+|||-+.++.. ||++.+|++|+.+...+
T Consensus       163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            6999999999999888888888775 59999999999999976 99999999999765433

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.38  E-value=8.5e-13  Score=73.97  Aligned_cols=53  Identities=25%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             CCcccccCCCHHHHHHHHH-HHHHhc-CCCEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~-~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+.+ ++.... .+.|+|+++|++..+..+|++++|++|+
T Consensus       150 llDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         150 LLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            5899999999998887766 555553 4789999999999886699999999874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.38  E-value=1.1e-12  Score=89.27  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=52.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc-c-ccCCEEEEEeC-ceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLST-V-QNADLIVVLQA-GQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~~~~~   61 (79)
                      +||||||+||+..+..+.+.+..... ++|+|+++|+++. + ..+|++++|++ |+++..|+..
T Consensus      1042 ~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence            58999999999999999999887754 8999999999984 4 45999999996 8999888753

>PLN03073 ABC transporter F family; Provisional

Probab=99.38  E-value=1.3e-12  Score=84.31  Aligned_cols=61  Identities=18%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~   63 (79)
                      ||||||++||+.....+...+...  +.|+|++||++.++.. |++++++.+|+++ ..|++.+.
T Consensus       650 LLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        650 LLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            689999999999988887777654  3599999999999976 9999999999987 55665543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.37  E-value=8.6e-13  Score=71.33  Aligned_cols=53  Identities=28%  Similarity=0.429  Sum_probs=47.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+...+.+... ++|+++++|+++.+.. ||+++.+.+|+
T Consensus       103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            58999999999999999998887644 6899999999999977 79999998874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0054|consensus

Probab=99.37  E-value=2.2e-12  Score=86.94  Aligned_cols=73  Identities=30%  Similarity=0.521  Sum_probs=63.7

Q ss_pred             CCcccccCCCHHH-HHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474          1 MFRLFGSALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL   73 (79)
Q Consensus         1 ~~de~~s~lD~~~-~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~   73 (79)
                      +||-|.||+|.++ +..+.+++....+++|+|++||.++.+..+|.|++|++|+|.+.|++.++.+....+..+
T Consensus       666 LLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l  739 (1381)
T KOG0054|consen  666 LLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAEL  739 (1381)
T ss_pred             EEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHH
Confidence            5899999999995 557778887777899999999999999999999999999999999999998655555544

>PLN03073 ABC transporter F family; Provisional

Probab=99.37  E-value=1.7e-12  Score=83.70  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=53.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~   63 (79)
                      +|||||++||+.....+...+..+  +.|+|+++|+..++.. |++++++++|++. +.|++..+
T Consensus       367 lLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~  429 (718)
T PLN03073        367 LLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTF  429 (718)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            689999999999999999988775  6799999999999976 9999999999996 56666544

>PTZ00243 ABC transporter; Provisional

Probab=99.36  E-value=2.2e-12  Score=88.36  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=55.4

Q ss_pred             CCcccccCCCHHHHHHHH-HHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQ-AALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~-~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +||||||+||+.....+. .++.....++|+|++||++..+..+|++++|++|++...|++.++...
T Consensus       805 lLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~  871 (1560)
T PTZ00243        805 LLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT  871 (1560)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            689999999999766554 444444468999999999999877999999999999999998887643

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.36  E-value=7.2e-13  Score=76.69  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=47.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~   56 (79)
                      +|||||++||+.....+...+.+... ++|+|+++|++..+.. ||++++++ |++.+
T Consensus       162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~  218 (255)
T cd03236         162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA  218 (255)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence            58999999999999999988887754 7999999999999875 99999995 55543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0059|consensus

Probab=99.36  E-value=8.1e-13  Score=86.74  Aligned_cols=66  Identities=14%  Similarity=0.335  Sum_probs=59.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||+|+||..++.++.++.+..+ ++.+|++||.+++++. |+|+.+|.+|++...|.+.++.+.
T Consensus       721 ~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr  788 (885)
T KOG0059|consen  721 LLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR  788 (885)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence            48999999999999999999998876 5599999999999987 999999999999999998886543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.36  E-value=1.7e-12  Score=88.22  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=55.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcc-ccc-cCCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQ-NADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+.++..+.+.++.+..  ++|+|+++|++. .+. .+|++++|.+|+++..|+..++
T Consensus       232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~  298 (1394)
T TIGR00956       232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA  298 (1394)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence            58999999999999999999988753  889999999974 554 4999999999999999987765

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.36  E-value=1.4e-12  Score=73.76  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             CCcccccCCCHHHHHHHHH--HHHHhcC-CCEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQA--ALESACK-GRTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~--~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+.+  ++..... +.|+|+++|++..+..+|+++++.+|.
T Consensus       163 llDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         163 FLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            5899999999998887776  5555443 789999999999886699999998873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.36  E-value=1.8e-12  Score=85.23  Aligned_cols=63  Identities=27%  Similarity=0.425  Sum_probs=56.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~   63 (79)
                      ||||||++||+.....+.+.+.++. .+.|+|+++|++..+..+|+++.|      ++|+++..|++.++
T Consensus       854 ILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       854 ILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            6999999999999999999988775 489999999999988779999999      68999998887653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.36  E-value=8.5e-13  Score=81.69  Aligned_cols=65  Identities=40%  Similarity=0.551  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      |||||-|+||...+..+...+...+ .|.|+|+|+|+++.+..+|++++|++|++...|+..+++.
T Consensus       495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa  560 (580)
T COG4618         495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA  560 (580)
T ss_pred             EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence            6999999999998887777776664 5999999999999999999999999999999999888764

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.35  E-value=2.9e-12  Score=80.72  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=52.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeC-ceEe-eecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIV-EMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~~~~~~~~~   65 (79)
                      +|||||++||+.....+.+.+....  .|+|++||++..+.. ||+++++++ |++. ..|++.++..
T Consensus       468 lLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~  533 (556)
T PRK11819        468 LLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE  533 (556)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence            6899999999999999999998763  489999999999866 999999986 7775 4677766544

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.35  E-value=1.5e-12  Score=73.55  Aligned_cols=53  Identities=23%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+...+....+ +.|+|++||+++.+.. +++++++++|.
T Consensus       156 llDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         156 FIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence            58999999999999999888887755 8899999999998866 89999999875

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.34  E-value=1.9e-12  Score=73.15  Aligned_cols=51  Identities=20%  Similarity=0.213  Sum_probs=45.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~   51 (79)
                      +|||||++||+.....+.+.+.+.. .+.|+|++||++..+.. |++++.++.
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        160 LLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            5899999999999999999987654 47899999999999966 999998864

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.34  E-value=6.1e-12  Score=71.40  Aligned_cols=71  Identities=24%  Similarity=0.237  Sum_probs=62.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||.+|-|.....+...+..+.+  +.||++|.++...+.. +|+.++|.+|+++..|+..++..++....
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~  232 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVRE  232 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHH
Confidence            58999999999999999888888763  6799999999998865 99999999999999999999887655443

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.34  E-value=2.1e-12  Score=72.29  Aligned_cols=65  Identities=20%  Similarity=0.377  Sum_probs=59.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +||||-++||-.....+++.++.+..  ++|+++|-||..++.. +|.++-|++|+++..|++.++..
T Consensus       158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            58999999999999999999888753  9999999999999987 99999999999999999998764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.33  E-value=3.6e-12  Score=80.24  Aligned_cols=61  Identities=18%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeC-ceEe-eecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIV-EMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~~~~~~~   63 (79)
                      +|||||++||+.....+.+.+....  .|+|++||++..+.. ||++++|++ |++. ..|++.+.
T Consensus       466 lLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~  529 (552)
T TIGR03719       466 LLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY  529 (552)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence            6899999999999999999998763  489999999999876 999999986 5765 44666544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.33  E-value=3.3e-12  Score=81.53  Aligned_cols=61  Identities=25%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe-CceEee-ecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-AGQIVE-MGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~-~G~i~~-~~~~~~~   63 (79)
                      +|||||++||+.....+.+.+...  +.|+|+|||+..++.. |++++++. +|++.. .|++.+.
T Consensus       463 lLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        463 ILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence            689999999999999999888775  4599999999999866 99999998 799865 5666665

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.33  E-value=2.5e-12  Score=79.77  Aligned_cols=59  Identities=20%  Similarity=0.348  Sum_probs=53.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      ||||||-++|.-++..++.++.+++. |.++|+++.+++++.. ||||++|+.|++...-.
T Consensus       424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~  484 (500)
T COG1129         424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD  484 (500)
T ss_pred             EECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence            68999999999999999999998864 9999999999999976 99999999999987443

>PRK13409 putative ATPase RIL; Provisional

Probab=99.33  E-value=1.9e-12  Score=82.11  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+.++..+.+.+.+...  +.|+|+++|++..+.. ||++++++ |++...|.
T Consensus       476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence            68999999999999999999988743  7899999999999866 99999996 56655554

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.33  E-value=5.7e-12  Score=86.69  Aligned_cols=65  Identities=20%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe------CceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~------~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+.....+.+.+..+. .|.|+|+|+|+++.+..||+++.|.      +|+++..|++.++..
T Consensus       501 ILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~  572 (1809)
T PRK00635        501 ILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA  572 (1809)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence            6999999999999999999988875 4899999999999555599999996      778888888777643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.32  E-value=1.9e-12  Score=81.02  Aligned_cols=49  Identities=45%  Similarity=0.639  Sum_probs=44.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   49 (79)
                      +||||||+||+.+...+.+.+.....++|+|+++|+++.+..+|++++|
T Consensus       481 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       481 LLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             EEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            6899999999999999999998877799999999999988779999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.4e-12  Score=75.20  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=59.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +||||-++||-..+.++...+++++.  ...+++|+|.++++.+ +|+|++|++|++...|+..++...
T Consensus       151 LmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~  219 (352)
T COG4148         151 LMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS  219 (352)
T ss_pred             eecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence            58999999999999999999998864  7899999999999987 999999999999999998876543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=8e-12  Score=71.04  Aligned_cols=60  Identities=30%  Similarity=0.441  Sum_probs=55.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc--CCEEEEEeCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~   60 (79)
                      |||||.|+||...-+.+.+.+..++. +.++++|||+...+..  .|+|.+|.+|+|+..|.+
T Consensus       167 ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~  229 (251)
T COG0396         167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP  229 (251)
T ss_pred             EecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence            69999999999999999999998865 9999999999988854  699999999999999998

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.32  E-value=2.4e-12  Score=72.09  Aligned_cols=49  Identities=20%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l   49 (79)
                      +|||||++||+..+..+.+.+.++.+ +.|+|+++|++..+..||++++|
T Consensus       157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence            68999999999999999999987754 88999999999876569988764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.31  E-value=2.7e-12  Score=70.65  Aligned_cols=55  Identities=20%  Similarity=0.278  Sum_probs=48.8

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474          2 FRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE   56 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~   56 (79)
                      =||||.+||..+...+..++-.+. + |.|.++||||+..+.+|+|.+.|.+|++..
T Consensus       170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence            399999999999998888876553 3 999999999999999999999999999865

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.31  E-value=7.3e-12  Score=69.65  Aligned_cols=57  Identities=25%  Similarity=0.297  Sum_probs=51.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474          2 FRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG   58 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~   58 (79)
                      =||||.+|||.....++.++++... |.|++++||+.+.+.. ..+++.+++|+++...
T Consensus       161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            4999999999999999999988754 9999999999999976 7999999999987644

>KOG0061|consensus

Probab=99.31  E-value=1.8e-12  Score=82.41  Aligned_cols=64  Identities=30%  Similarity=0.353  Sum_probs=55.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcc-ccc-cCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TVQ-NADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +||||||+||......+.+.+++++ +|+|||+.-|++. .+. ..|++++|.+|+++..|++.+..
T Consensus       193 flDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~  259 (613)
T KOG0061|consen  193 FLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL  259 (613)
T ss_pred             EecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence            4899999999999998888888775 4999999999996 333 49999999999999999887643

>PLN03140 ABC transporter G family member; Provisional

Probab=99.31  E-value=4.8e-12  Score=86.31  Aligned_cols=64  Identities=25%  Similarity=0.305  Sum_probs=55.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcc-ccc-cCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TVQ-NADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+.+...+.+.+++..  .++|+|+++|++. .+. .+|++++|.+|+++..|+..++.
T Consensus       359 llDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~  426 (1470)
T PLN03140        359 FMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL  426 (1470)
T ss_pred             EEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHH
Confidence            5899999999999999999998874  3889999999974 554 49999999999999999876653

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.30  E-value=8.4e-12  Score=69.85  Aligned_cols=69  Identities=16%  Similarity=0.288  Sum_probs=62.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||++++-........+++..++.+.++++|.|||.++.. +++|.+|..|.+.+.|+..++..++..
T Consensus       170 LlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~V  239 (249)
T COG4674         170 LLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKV  239 (249)
T ss_pred             EecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcce
Confidence            589999999888888999999999889999999999999976 999999999999999999888766554

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.30  E-value=9.8e-12  Score=71.17  Aligned_cols=59  Identities=17%  Similarity=0.292  Sum_probs=51.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC---CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~---~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      |||||+++||...+..+.+.+..+..   +.++|+|||+.+++.. .++++.++.|+++.+|.
T Consensus       194 iLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             EecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            69999999999999888888877642   7789999999999976 79999999999988763

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.29  E-value=7.5e-12  Score=86.12  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=57.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe------CceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~------~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+.....+.+.+..+. .+.|+|+++|+++.+..+|+++.|.      +|+++..|++.++..
T Consensus       835 ILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        835 VLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            6899999999999999999988775 4889999999999885599999996      789999999887754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.29  E-value=6.3e-12  Score=70.41  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+.....+...+.+...+.++|++||+++.+..+|+++.+..
T Consensus       140 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         140 VLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence            589999999999999999999887668899999999988766999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK13409 putative ATPase RIL; Provisional

Probab=99.28  E-value=6.1e-12  Score=79.82  Aligned_cols=52  Identities=23%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G   52 (79)
                      +|||||++||+..+..+.+.+..+..+.|+|+++|+++.+.. +|++++++++
T Consensus       235 lLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        235 FFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            589999999999999999999877558899999999999966 9999999763

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=1.4e-11  Score=70.42  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-cCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      |+||.-+..|+.-+......+.+. .++.|+|+|+|++..+.+ ||+++++++|++...|.+.++.+
T Consensus       170 llDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~  236 (249)
T COG1134         170 LLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP  236 (249)
T ss_pred             EEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence            589999999999888777777776 568999999999999977 99999999999999999988754

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.26  E-value=4.9e-12  Score=71.73  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=43.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l   49 (79)
                      +|||||++||+..+..+.+.+..... +.|+|+++|++..+.. ||+++.+
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       172 LLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            58999999999999999999887653 8899999999988864 9998875

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.26  E-value=8.3e-12  Score=69.07  Aligned_cols=72  Identities=25%  Similarity=0.367  Sum_probs=62.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474          2 FRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL   73 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~   73 (79)
                      +||||.+||...+..+..+++.+. + +.+++++||++..+.. +++.++|+.|.+++.|-...++.++..-++.
T Consensus       175 MDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQ  249 (258)
T COG4107         175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQ  249 (258)
T ss_pred             ecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHH
Confidence            799999999999999999888764 3 8899999999999865 9999999999999999888887777664443

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.25  E-value=2.9e-12  Score=70.83  Aligned_cols=65  Identities=20%  Similarity=0.384  Sum_probs=58.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +||||.++||..++..+..++...+. |.++||..||++.-.+ +|+++.+++|++...|...++..
T Consensus       155 llDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt  221 (248)
T COG4138         155 LLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT  221 (248)
T ss_pred             EecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence            58999999999999999999988875 9999999999997765 99999999999999998877654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.24  E-value=1.3e-11  Score=69.11  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=42.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l   49 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|+++|+...+.. +++++.+
T Consensus       148 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         148 ILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            6899999999999999999987764 48899999999887755 8988876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.23  E-value=1.5e-11  Score=77.22  Aligned_cols=63  Identities=29%  Similarity=0.353  Sum_probs=53.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~   65 (79)
                      +|||||++||..+...+...+... .+ |+|+||||..++.. |++++.+++|++. +.|+++....
T Consensus       176 LLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~  240 (530)
T COG0488         176 LLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE  240 (530)
T ss_pred             EEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence            589999999999999998888754 44 99999999999976 9999999999875 4577777653

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.23  E-value=1.8e-11  Score=68.91  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             CCcccccCCCHHHHH-HHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEK-LVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~-~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +||||+++||+.... .+.+.+.+...  +.++|+++|++.....+|+++.+.+
T Consensus       144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence            589999999999988 99888887754  7899999999987767999999865

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.23  E-value=2e-11  Score=68.51  Aligned_cols=49  Identities=18%  Similarity=0.193  Sum_probs=42.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l   49 (79)
                      +|||||++||+.....+.+.+.+.. .+.|+|++||++.++.. ..|++++
T Consensus       152 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        152 ILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            5899999999999999999988764 47899999999999966 5666665

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.21  E-value=2.2e-11  Score=70.17  Aligned_cols=51  Identities=18%  Similarity=0.193  Sum_probs=44.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+.....+.+.+.+... +.++|++||+...+..+|+++++..
T Consensus       182 llDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~  233 (247)
T cd03275         182 VLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR  233 (247)
T ss_pred             EEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence            58999999999999999998888765 8899999999877767999988864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.19  E-value=3.6e-11  Score=67.65  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=43.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+.....+.+.+.+.. .+.|+|++||++..+.. ++++.+..
T Consensus       150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence            5899999999999999999988753 48899999999998876 88877743

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.19  E-value=3.5e-11  Score=77.22  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+.....+.+.+...  ++|+|+++|+++.+..+|++++++.
T Consensus       605 lLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       605 ILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            689999999999999998888663  8899999999998877999999964

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.18  E-value=5.3e-11  Score=67.34  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+.....+.+.+.++..+.++|+++|+.+....||+++++..
T Consensus       154 ilDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         154 VMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence            589999999999999999999988778899999999765566999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.18  E-value=3.4e-11  Score=66.17  Aligned_cols=54  Identities=24%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||+||+||+.+++.+.+++..+. . ...++.|||+.+...+ +++++.+..|++
T Consensus       156 LLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         156 LLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             EecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            5899999999999999999988775 3 7799999999998755 999999999876

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.17  E-value=6.5e-11  Score=68.31  Aligned_cols=50  Identities=14%  Similarity=0.282  Sum_probs=43.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +|||||++||+.....+.+.+....++.++|++||+.+....||+++-+.
T Consensus       193 llDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~  242 (251)
T cd03273         193 ILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR  242 (251)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence            58999999999999999999988767889999999966666799998765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.15  E-value=8.9e-11  Score=66.58  Aligned_cols=59  Identities=20%  Similarity=0.326  Sum_probs=50.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-cC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      +|||=|++|||.+...+++.-... .+ +.|.+||||+++.+.. .+|.++|++|+|+..-.
T Consensus       171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~  232 (263)
T COG1101         171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT  232 (263)
T ss_pred             EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence            589999999999998888776654 33 7899999999998865 99999999999987543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.13  E-value=6.7e-11  Score=65.70  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLST   39 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~   39 (79)
                      +|||||++||+..+..+.+.+.+..+ +.|+|++||+++.
T Consensus       150 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       150 LLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            68999999999999999999887754 8899999999865

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.13  E-value=1.4e-10  Score=72.95  Aligned_cols=62  Identities=24%  Similarity=0.290  Sum_probs=52.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeee-cChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM-GNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~-~~~~~~~~   65 (79)
                      ||||||++||..+...+...+...  ..|+|+|+||..++.. +++++.+.+ .+... |.+.+...
T Consensus       462 iLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~  525 (530)
T COG0488         462 LLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE  525 (530)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence            699999999999999999888765  6799999999999977 999999987 55444 77766543

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.12  E-value=1.4e-10  Score=66.51  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=41.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +|||||++||+.....+.+.+.++..+.++|+++|..+....||+++++.
T Consensus       185 llDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~  234 (243)
T cd03272         185 LFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK  234 (243)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence            58999999999999999999888766777887888765545599999985

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.12  E-value=9.1e-11  Score=68.60  Aligned_cols=53  Identities=19%  Similarity=0.258  Sum_probs=46.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      +||||+++||+.....+.+.+.....+.++|+++|++.....+|+++.+.+|.
T Consensus       197 llDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~  249 (276)
T cd03241         197 IFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV  249 (276)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence            58999999999999999998888767889999999998666699999998763

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.12  E-value=1.6e-10  Score=65.42  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--C-CEEEEEccCcccccc-CC--EEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--G-RTVLMIAHRLSTVQN-AD--LIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~-~tvi~vtH~~~~~~~-~d--~v~~l~~G~   53 (79)
                      +|||||++||+.....+.+.+....+  + .++|++||++..... ++  +++++.+|+
T Consensus       153 llDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         153 VVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             EEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            58999999999999999888877643  3 479999999866643 54  778888875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.12  E-value=1.3e-10  Score=64.94  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVV   48 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~   48 (79)
                      +|||||++||+.....+.+.+..+. .+.|+|+++|+...+ .|++++.
T Consensus       150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~  197 (198)
T TIGR01189       150 ILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR  197 (198)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence            6899999999999999999998764 488999999998544 3455543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.11  E-value=1.6e-10  Score=64.80  Aligned_cols=52  Identities=15%  Similarity=0.240  Sum_probs=44.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC----CCEEEEEccCccccccCCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK----GRTVLMIAHRLSTVQNADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~----~~tvi~vtH~~~~~~~~d~v~~l~~G   52 (79)
                      +|||||++||+.....+.+.+.....    +.++++++|+++.+..+|+|.+|+.+
T Consensus       136 llDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~  191 (198)
T cd03276         136 CLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK  191 (198)
T ss_pred             EecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence            68999999999999999888877532    35889999999999888999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00634 recN DNA repair protein RecN

Probab=99.11  E-value=1.1e-10  Score=73.85  Aligned_cols=53  Identities=15%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      |||||+++||+.....+...+.....+.++|++||++..+..+|+++.+.+|.
T Consensus       467 ilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~  519 (563)
T TIGR00634       467 IFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG  519 (563)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence            68999999999999999999988777899999999998887799999998754

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.10  E-value=1.5e-10  Score=64.63  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=39.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-cCCCEEEEEccCccccccCCEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLI   46 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v   46 (79)
                      +|||||++||+..+..+.+.+... ..+.|+|+++|++..+..+|.+
T Consensus       146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~  192 (195)
T PRK13541        146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL  192 (195)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence            589999999999999999888754 3589999999999988776654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.08  E-value=1.6e-10  Score=64.69  Aligned_cols=45  Identities=24%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADL   45 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~   45 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|+++|+...+..+|-
T Consensus       150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~  195 (200)
T PRK13540        150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADY  195 (200)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccch
Confidence            6899999999999999999998764 48899999999988866653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.06  E-value=2.1e-10  Score=71.93  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRL   37 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~   37 (79)
                      |||||||+||+.++..+.+.+....+++|+|+|+|++
T Consensus       493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            6899999999999999999998887899999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0065|consensus

Probab=99.05  E-value=9.7e-11  Score=78.76  Aligned_cols=61  Identities=26%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc--ccCCEEEEEeC-ceEeeecChhH
Q psy10474          2 FRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTV--QNADLIVVLQA-GQIVEMGNHKS   62 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~--~~~d~v~~l~~-G~i~~~~~~~~   62 (79)
                      |||||||||.++...+...++.+.. |+||+..-|+++.-  +..|+++.|++ |+.++.|+..+
T Consensus       954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            8999999999999999999988765 99999999999744  55999999976 66788777554

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.05  E-value=4.3e-10  Score=62.20  Aligned_cols=51  Identities=18%  Similarity=0.274  Sum_probs=44.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +||||+++||+.....+.+.+.+... +.++|+++|+++.+..+|+++.+..
T Consensus       121 ilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~  172 (178)
T cd03239         121 VLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence            58999999999999988888887654 6899999999987777999998865

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.03  E-value=1.5e-09  Score=70.69  Aligned_cols=68  Identities=28%  Similarity=0.408  Sum_probs=58.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~   68 (79)
                      ||||||++|=+..-..+...+.++. .|.|+|+|.|.++.+..+|-|+=+      ..|.|++.|.|.++.+.+.
T Consensus       848 iLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~  922 (935)
T COG0178         848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKA  922 (935)
T ss_pred             EeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCcc
Confidence            6999999999998888888777765 599999999999999999999987      4688999999999876443

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.01  E-value=2.8e-10  Score=63.78  Aligned_cols=58  Identities=17%  Similarity=0.082  Sum_probs=46.2

Q ss_pred             CCcccccCCCHHHHHHHH-HHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSALDNESEKLVQ-AALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~-~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~   58 (79)
                      +||||++++|+.....+. ..++.+. .+.++|++||+......++++..+.+|++...+
T Consensus       113 llDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         113 LLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence            589999999999887764 4566554 388999999986554559999999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.00  E-value=5.8e-10  Score=62.70  Aligned_cols=57  Identities=30%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-cC-CCEEEEEccCcccccc-CCEEEEEeC--ceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~~-~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~   57 (79)
                      +||||.++||.-++..++.++-.. .. ++.+++|||+.+++.. +++.++|+-  |+++..
T Consensus       155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~  216 (259)
T COG4525         155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER  216 (259)
T ss_pred             eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence            589999999999999999887654 33 9999999999998865 999999974  677653

>PRK10869 recombination and repair protein; Provisional

Probab=98.97  E-value=1.1e-09  Score=69.24  Aligned_cols=52  Identities=10%  Similarity=0.142  Sum_probs=47.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G   52 (79)
                      |||||+++||+.....+...+.....+.++|+|||++..+..+|+++.+..+
T Consensus       457 i~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~  508 (553)
T PRK10869        457 IFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE  508 (553)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            6899999999999999999999887789999999999887779999999764

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.93  E-value=2e-09  Score=61.36  Aligned_cols=71  Identities=24%  Similarity=0.324  Sum_probs=60.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      |-||||.++++.++.++..++.++.  .+.|+++++||+..+.. ||++-++.-|.-++.++..++...+-+-+
T Consensus       181 IADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPY  254 (330)
T COG4170         181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPY  254 (330)
T ss_pred             eccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCch
Confidence            3599999999999999999988775  38899999999999976 99999999999888888888776555533

>KOG0062|consensus

Probab=98.92  E-value=2e-09  Score=67.15  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~   56 (79)
                      ||||||+.||-..-..+...+...  +..||+|+|+.+++.. |..+|+.++|++.-
T Consensus       505 VLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  505 VLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             EecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            699999999998888777777654  6689999999999976 99999999999864

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.92  E-value=1.5e-09  Score=59.11  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=43.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +||||++++|+.....+...+.+.. ++.++|++||+++....+|+++.|..
T Consensus       104 llDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227         104 ILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            5899999999999888877776653 36899999999998877899998854

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.91  E-value=4.9e-09  Score=68.35  Aligned_cols=69  Identities=25%  Similarity=0.385  Sum_probs=59.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~~   69 (79)
                      |||||+-+|=++....+.+.+..++. |.|+|+|.||.+.+..+|.++=+      ..|.|+..|++.++..++..
T Consensus       506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~S  581 (935)
T COG0178         506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPES  581 (935)
T ss_pred             EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcc
Confidence            69999999999977777777777765 99999999999999999999987      46889999999998876543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.87  E-value=1.9e-09  Score=60.48  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~   60 (79)
                      +||||++++|+.....+ ..+++... .+.++|++||+.+....++++..+..|++...+..
T Consensus       113 llDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~  174 (202)
T cd03243         113 LIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITT  174 (202)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence            58999999999876655 44455443 38899999999887777888888888888766543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00618 sbcc exonuclease SbcC

Probab=98.85  E-value=4.8e-09  Score=70.33  Aligned_cols=52  Identities=15%  Similarity=0.123  Sum_probs=45.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G   52 (79)
                      +|||||++||+.....+...+..+. .|++|++|||++..... ++++.+++.|
T Consensus       983 ~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618       983 FIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence            5899999999999999988888764 48899999999998876 9999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.82  E-value=6.1e-09  Score=65.75  Aligned_cols=50  Identities=26%  Similarity=0.306  Sum_probs=44.1

Q ss_pred             CCcccc-cCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFG-SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~-s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +||||+ ++||+.....+...+... .+.++|++||++.....+++++++.+
T Consensus       501 ilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~  551 (562)
T PHA02562        501 ILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEK  551 (562)
T ss_pred             EEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEE
Confidence            589998 789999999999988887 78899999999777667999999986

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.78  E-value=2e-08  Score=56.29  Aligned_cols=69  Identities=17%  Similarity=0.312  Sum_probs=59.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      |-||+-.+||...+-++.+++-.+.  -|.+-|+|+.++..+.. .|+|++|+.|++++.|.+.+++..+..
T Consensus       172 IaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~  243 (267)
T COG4167         172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLH  243 (267)
T ss_pred             EehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCcc
Confidence            4599999999999988888776654  38899999999999987 999999999999999999998766544

>PRK03918 chromosome segregation protein; Provisional

Probab=98.76  E-value=1.2e-08  Score=67.19  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=43.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      ||||||++||+.....+...+..... +.++|++||++.....||+++.|..
T Consensus       817 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~  868 (880)
T PRK03918        817 ILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSL  868 (880)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEe
Confidence            68999999999999888888876543 6799999999876656999999973

>KOG0927|consensus

Probab=98.73  E-value=2.2e-08  Score=63.03  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=52.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCce-EeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ-IVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~-i~~~~~~~~~~~   65 (79)
                      +|||||.+||..+...+.+.+...-.. ++++++|.-+++.. |..|+.+.+++ +.+.|++.....
T Consensus       244 LLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~  309 (614)
T KOG0927|consen  244 LLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK  309 (614)
T ss_pred             EecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence            589999999999999888888665323 88999999999977 99999999999 456677766543

>PRK02224 chromosome segregation protein; Provisional

Probab=98.64  E-value=5.6e-08  Score=64.25  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-C-CEEEEEccCccccccCCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-G-RTVLMIAHRLSTVQNADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~-~tvi~vtH~~~~~~~~d~v~~l~~G   52 (79)
                      ||||||+++|+.....+..++..... + .++|++||++..+..+|+++.+...
T Consensus       816 ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~  869 (880)
T PRK02224        816 ILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKD  869 (880)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecC
Confidence            68999999999999888888877653 4 4799999999888779999999643

>PRK01156 chromosome segregation protein; Provisional

Probab=98.64  E-value=4.7e-08  Score=64.77  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=41.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C--C-CEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K--G-RTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~--~-~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +|||||++||+.....+..++.... .  + .++|++||++.....||+++.+.
T Consensus       830 ilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~~  883 (895)
T PRK01156        830 IMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVK  883 (895)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEEE
Confidence            5899999999999888888776432 2  2 48999999999776699999987

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.64  E-value=2.9e-08  Score=66.50  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      |||||+++||+.....+..++.....+.++|+|||++..+..||+++...
T Consensus      1116 ~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168      1116 ILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred             EecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence            69999999999999999999988766788999999999876689887553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0927|consensus

Probab=98.62  E-value=1.3e-08  Score=63.96  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=50.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee-ecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE-MGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~~~~~   61 (79)
                      ||||||++||......+.+.+..+  ..++|+++|+...+.+ +++++.+.+|.+.. .|.+.
T Consensus       532 lLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~  592 (614)
T KOG0927|consen  532 LLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE  592 (614)
T ss_pred             EecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence            699999999999999999888776  5689999999999987 99999999988754 45543

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.57  E-value=3.9e-08  Score=56.11  Aligned_cols=57  Identities=11%  Similarity=0.015  Sum_probs=39.9

Q ss_pred             CCccc---ccCCCHHHHHHHH-HHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeec
Q psy10474          1 MFRLF---GSALDNESEKLVQ-AALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~---~s~lD~~~~~~~~-~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~   58 (79)
                      +||||   |+++|+....... +.+.+ ..+.++|++||..+....++++..+.+|++....
T Consensus       114 LLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~  174 (222)
T cd03285         114 IIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALT  174 (222)
T ss_pred             EEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence            58999   9999998654322 22322 2478999999964443458999989889886544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=4.4e-08  Score=54.31  Aligned_cols=51  Identities=20%  Similarity=0.252  Sum_probs=43.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~   51 (79)
                      +|||||++||..++..+.+++.+.. .|..+|=|.||-+.-.. +||.+-+..
T Consensus       175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             EecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            5899999999999999999998775 48899999999766665 898887754

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.53  E-value=1.5e-07  Score=63.27  Aligned_cols=51  Identities=14%  Similarity=0.166  Sum_probs=44.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +||||+++||+.....+..++.....+..+|++||+...+..||+++.+..
T Consensus      1101 ~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169      1101 AFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred             EecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence            589999999999999999999887667889999999987767999987653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.53  E-value=1.9e-07  Score=54.65  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=39.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-C---CEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-A---DLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~---d~v~~l~~G~i   54 (79)
                      +|||||++||+.....+...+....   .+++++|+...+.. +   .+++.+++|++
T Consensus       215 llDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i  269 (270)
T cd03242         215 LLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRRAQIFRVDAGTL  269 (270)
T ss_pred             EEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence            5899999999999998888886542   45666666665544 5   67899999875

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.51  E-value=2e-07  Score=50.88  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=40.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHH-hc-CCCEEEEEccCccccccCCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALES-AC-KGRTVLMIAHRLSTVQNADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~-~~-~~~tvi~vtH~~~~~~~~d~v~~l   49 (79)
                      +||||+|.||...+..+.+.+-. .+ .+..+|+|||+...++...+|+-+
T Consensus       157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence            58999999999998888776543 33 489999999999999876776655

>KOG0062|consensus

Probab=98.49  E-value=2.1e-08  Score=62.80  Aligned_cols=63  Identities=16%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceE-eeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQI-VEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i-~~~~~~~~~~~   65 (79)
                      +|||||+.||..+-..+..-+..+  +.|+|+|+||..++.. |.-|+.+.+-++ .+.|+++.+..
T Consensus       221 LLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk  285 (582)
T KOG0062|consen  221 LLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK  285 (582)
T ss_pred             eecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence            589999999999988888888765  4899999999999976 888888876555 34577766543

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.49  E-value=1.3e-07  Score=60.30  Aligned_cols=50  Identities=24%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +|||+||+||+.++..+.+.+++...+.|+|.|.|+.......++.+.+.
T Consensus       538 ~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             EEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            58999999999999999999999889999999999987775545544443

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.46  E-value=1.8e-07  Score=52.62  Aligned_cols=41  Identities=12%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc-CCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~~~tvi~vtH~~~~~~   41 (79)
                      +||||++++|+.....+ ...+.... .+.++|++||+++.+.
T Consensus       110 llDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~  152 (199)
T cd03283         110 LLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD  152 (199)
T ss_pred             EEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence            58999999999977654 44555543 4789999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.45  E-value=4.3e-07  Score=51.46  Aligned_cols=50  Identities=18%  Similarity=0.318  Sum_probs=40.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      ||||+.++||......+..++.....+..+|++||+...+..+++.+.+.
T Consensus       163 ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~  212 (220)
T PF02463_consen  163 ILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT  212 (220)
T ss_dssp             EEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            68999999999999999999998877889999999999888888877653

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.45  E-value=2.8e-07  Score=57.55  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=45.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~   50 (79)
                      +||||+|-||..++......++++.+ ++++|+|.||+..+.. +|-|.++.
T Consensus       236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            58999999999999999999999877 8999999999999966 88888775

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.43  E-value=3.5e-07  Score=57.03  Aligned_cols=62  Identities=23%  Similarity=0.317  Sum_probs=52.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-cCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      |...||.+||.-....+.+.+.+. ..|+.+++++-+++++.. +|++.+|.+|++....++.+
T Consensus       426 I~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             EEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            356899999999888887766655 459999999999999966 99999999999987766554

>KOG2355|consensus

Probab=98.43  E-value=5.9e-07  Score=51.28  Aligned_cols=61  Identities=16%  Similarity=0.316  Sum_probs=52.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~   61 (79)
                      +|||.|--||.-.+..+.+++...++  ++|+++.||-.+-+.. ..+++.+.+|+++..-++.
T Consensus       170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~  233 (291)
T KOG2355|consen  170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ  233 (291)
T ss_pred             EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence            58999999999999999888877654  8999999999998865 9999999999998754443

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=8.8e-07  Score=49.59  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=35.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~   41 (79)
                      |||||+++||......+..++.... .|..||..||++-.+.
T Consensus       153 iLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         153 ILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             eecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence            6999999999999999999887765 4888999999876553

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.41  E-value=1.2e-06  Score=49.29  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +||||-++|.|..+..+...+..+.. |..+|++||.+=.+.. ...++.++.+.+
T Consensus       151 iLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~  206 (233)
T COG3910         151 ILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI  206 (233)
T ss_pred             EecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence            69999999999999988888888764 8899999998776654 678888888764

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.40  E-value=4.1e-07  Score=61.43  Aligned_cols=51  Identities=22%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~   51 (79)
                      +|||||++||+.....+...+..+. .|++|++|||......+ ..++.+-..
T Consensus       980 ~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246        980 FLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceEEEEEC
Confidence            5899999999999999999888775 48999999997777766 677777664

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.39  E-value=5.2e-07  Score=60.16  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||..||+.....+...+..... +.+|++|||+......++.++....
T Consensus       846 ~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i~V~k  897 (908)
T COG0419         846 FLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVKK  897 (908)
T ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEEEEEe
Confidence            58999999999999999998887765 7999999999888888888887764

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.33  E-value=4.6e-07  Score=50.36  Aligned_cols=44  Identities=20%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCccccccCC
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNAD   44 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~~~~d   44 (79)
                      +||||++++|+.....+ ..+++...  .+.++|++||+++....++
T Consensus        83 llDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~  129 (185)
T smart00534       83 LLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD  129 (185)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence            58999999999965554 55555543  2789999999996444354

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.27  E-value=3.9e-07  Score=51.86  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=35.0

Q ss_pred             CCccc---ccCCCHHHH-HHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474          1 MFRLF---GSALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM   57 (79)
Q Consensus         1 ~~de~---~s~lD~~~~-~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~   57 (79)
                      +||||   |+++|+... ..+.+.+.. ..+.++|++||+.+....++++..+.+|++...
T Consensus       114 llDEp~~gt~~lD~~~~~~~il~~l~~-~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~  173 (216)
T cd03284         114 LLDEIGRGTSTYDGLSIAWAIVEYLHE-KIGAKTLFATHYHELTELEGKLPRVKNFHVAVK  173 (216)
T ss_pred             EEecCCCCCChHHHHHHHHHHHHHHHh-ccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEE
Confidence            58999   888887542 222222221 137899999999755444666655666665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR00606 rad50 rad50

Probab=98.22  E-value=1.2e-06  Score=60.28  Aligned_cols=41  Identities=22%  Similarity=0.215  Sum_probs=33.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc------CCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC------KGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~------~~~tvi~vtH~~~~~~   41 (79)
                      +|||||++||+.....+...+..+.      .+.++|++||++.++.
T Consensus      1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606      1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred             EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence            5899999999999887777665541      3679999999998774

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.22  E-value=1.5e-06  Score=57.54  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             CCcccccCC-CHHHHHHHHHHHHHhcC-CCEEEEEccCccccc----------cCCEEEEEeCceEeeec
Q psy10474          1 MFRLFGSAL-DNESEKLVQAALESACK-GRTVLMIAHRLSTVQ----------NADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~~s~l-D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~----------~~d~v~~l~~G~i~~~~   58 (79)
                      ++|||+.+| |+.....+.+.+...++ +.+++++||++..+.          .|+.++++.+|++...+
T Consensus       657 llDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~  726 (818)
T PRK13830        657 ILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG  726 (818)
T ss_pred             EEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence            589999999 68888888888887654 889999999998763          48999999999875543

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.17  E-value=5.3e-07  Score=55.60  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=49.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHH-Hhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALE-SAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~-~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      ||||=.+-.||.-++.+...+- .+. .|+|++.||||-.++..+||.+.+++|++.+..+
T Consensus       471 v~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~tg  531 (546)
T COG4615         471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG  531 (546)
T ss_pred             EeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeeccc
Confidence            6899999999998887766544 333 3999999999999998899999999999987543

>PRK00064 recF recombination protein F; Reviewed

Probab=98.17  E-value=4.5e-06  Score=50.81  Aligned_cols=52  Identities=19%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc---CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~---~d~v~~l~~G~i   54 (79)
                      +||||++.||+..+..+...+...  +..+++++|+...+..   ..+++.+++|++
T Consensus       305 LlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i  359 (361)
T PRK00064        305 LLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENAKIFHVEQGKI  359 (361)
T ss_pred             EEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence            589999999999998888877543  4578889998876533   357889999986

>KOG0066|consensus

Probab=98.14  E-value=5.7e-06  Score=52.04  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=43.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~   55 (79)
                      ||||||.+||...-..+.+.+...  ...+|+|+|+-..+.. ....|++.+-.|-
T Consensus       727 ILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~  780 (807)
T KOG0066|consen  727 ILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGID  780 (807)
T ss_pred             EecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChh
Confidence            699999999999888888888765  5689999999998865 6677888775553

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.11  E-value=5.8e-06  Score=51.87  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~   50 (79)
                      +||||++.||..++..+...+++..  .++|.++|-||.-.+.. .|+++++.
T Consensus       478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             EecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            5899999999999998888888764  38899999999998876 89999985

>KOG0066|consensus

Probab=98.11  E-value=3.7e-07  Score=57.14  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee-ecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE-MGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~   63 (79)
                      +|||||.+||-.....+-+.++.|  .+|+++|+|+-.++.. |..|+.+++-++.+ .|+|.-+
T Consensus       435 MLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~F  497 (807)
T KOG0066|consen  435 MLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF  497 (807)
T ss_pred             eecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence            589999999988877777777766  6699999999999966 99999999877743 4666543

>KOG0065|consensus

Probab=98.06  E-value=1.1e-05  Score=55.59  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=53.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcc-cc-ccCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      .+||+|.+||..+..++.+.++....  +.|.++.-+++. .. ...|.|++|.+|.++.+|+..+..
T Consensus       283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~  350 (1391)
T KOG0065|consen  283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL  350 (1391)
T ss_pred             eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence            48999999999999999999988754  778888777774 34 459999999999999999987754

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.93  E-value=1.6e-05  Score=43.78  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=37.5

Q ss_pred             CCcccccCCC---HHHHHHHHHHHHHhc-CCCEEEEEccCccc---------ccc-CCEEEEEe
Q psy10474          1 MFRLFGSALD---NESEKLVQAALESAC-KGRTVLMIAHRLST---------VQN-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD---~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~---------~~~-~d~v~~l~   50 (79)
                      |+|||++.+|   ......+..++.... .+.|+|+++|....         +.. +|.++.++
T Consensus       100 viD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         100 VIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             EEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence            5899999999   666666666666554 48899999998764         444 78888776

A related protein is found in archaea.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.93  E-value=1e-05  Score=45.76  Aligned_cols=42  Identities=19%  Similarity=0.148  Sum_probs=31.3

Q ss_pred             CCcccccCCCHHHHHH-HHHHHHHhc-CCCEEEEEccCcccccc
Q psy10474          1 MFRLFGSALDNESEKL-VQAALESAC-KGRTVLMIAHRLSTVQN   42 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~-~~~~~~~~~-~~~tvi~vtH~~~~~~~   42 (79)
                      +||||++++|+..... ....++.+. .+.++|++||+.+.+..
T Consensus       113 llDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         113 LIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             EeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            5899999999976443 344555543 38899999999987743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=97.86  E-value=2.5e-05  Score=44.05  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=32.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~   40 (79)
                      ++|||.++|.|..+..+.+.+..... +..+|++||.+..+
T Consensus       262 liDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  262 LIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             EEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             EecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            48999999999988888888877665 78999999987654

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.76  E-value=3e-05  Score=44.10  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=30.3

Q ss_pred             CCcccccCCCHHH-HHHHHHHHHHhcC----CCEEEEEccCcccccc
Q psy10474          1 MFRLFGSALDNES-EKLVQAALESACK----GRTVLMIAHRLSTVQN   42 (79)
Q Consensus         1 ~~de~~s~lD~~~-~~~~~~~~~~~~~----~~tvi~vtH~~~~~~~   42 (79)
                      +||||++++|+.. ...+...++...+    +.++|++||+.+.+..
T Consensus       113 llDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281         113 LIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             EeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            5899999999975 4444556655532    2489999999987643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0060|consensus

Probab=97.68  E-value=6.2e-05  Score=48.40  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||.|||+|...+..+...+++.  +.|.|-|.|+.+....-|-++.|+.
T Consensus       593 iLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  593 ILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             EeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence            699999999999999998888765  8899999999888877888888865

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=97.65  E-value=4.3e-05  Score=50.72  Aligned_cols=42  Identities=17%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCcccccCCCHHHHHHHH-HHHHHhc-CCCEEEEEccCcccccc
Q psy10474          1 MFRLFGSALDNESEKLVQ-AALESAC-KGRTVLMIAHRLSTVQN   42 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~-~~~~~~~-~~~tvi~vtH~~~~~~~   42 (79)
                      +||||++++|+.....+. .++.... .+.++|++||+.+....
T Consensus       412 LlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~  455 (782)
T PRK00409        412 LFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL  455 (782)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence            589999999999776654 4555543 48899999999876644

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.63  E-value=0.00039  Score=43.59  Aligned_cols=57  Identities=18%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHHHHHHhc---CCC-----EEEEEccCccccccCCEEEEEeCceEeeecChhH
Q psy10474          5 FGSALDNESEKLVQAALESAC---KGR-----TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         5 ~~s~lD~~~~~~~~~~~~~~~---~~~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~   62 (79)
                      .++++|+.....+.+++++..   .|.     |+++.+|+++. ..+|++..+.+|+++..+...+
T Consensus       276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence            478999999999999988775   364     89999999985 4599999999999998776544

>TIGR01069 mutS2 MutS2 family protein

Probab=97.53  E-value=9.8e-05  Score=49.03  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc-CCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~~~tvi~vtH~~~~~   40 (79)
                      +||||++++|+.....+ ..++..+. .+.++|++||+.+..
T Consensus       407 LlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~  448 (771)
T TIGR01069       407 LFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK  448 (771)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence            58999999999988766 45666554 488999999998643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.51  E-value=8.3e-05  Score=42.58  Aligned_cols=41  Identities=20%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             CCcccccCCCHHHHHHHHHH-HHHhcC--CCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAA-LESACK--GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~-~~~~~~--~~tvi~vtH~~~~~~   41 (79)
                      +||||+++.++.....+... ++.+..  +.++|++||+++...
T Consensus       114 LlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~  157 (218)
T cd03286         114 ILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD  157 (218)
T ss_pred             EEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence            58999999999876555444 554433  789999999988764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00611 recf recF protein

Probab=97.50  E-value=0.00014  Score=44.51  Aligned_cols=39  Identities=26%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~   41 (79)
                      +||||++.||+..+..+.+.+...  +.++++++|++..+.
T Consensus       307 LLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~  345 (365)
T TIGR00611       307 LLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK  345 (365)
T ss_pred             EEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence            589999999999998888888643  668999999886653

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13175 AAA_15: AAA ATPase domain

Probab=97.45  E-value=0.00021  Score=43.63  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=34.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLST   39 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~   39 (79)
                      ++|||..+|-|..+..+...+.....  +..+|++||.+..
T Consensus       374 lidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  374 LIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            58999999999999999988887766  8899999998753

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.45  E-value=0.00017  Score=42.56  Aligned_cols=53  Identities=25%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccc--c-----------cc-CCEEEEEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLST--V-----------QN-ADLIVVLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~--~-----------~~-~d~v~~l~~G~i~~~~~~~   61 (79)
                      ++|||++      ...+..++.....|.++|+++|+...  +           .. ++++++|++|+  ..|...
T Consensus       199 llDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~  265 (270)
T TIGR02858       199 VVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVE  265 (270)
T ss_pred             EEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCcee
Confidence            5899864      23344444444568999999997655  3           23 79999998765  334443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.42  E-value=0.00028  Score=45.28  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      ||||..+|+-......+.+.+..+....-|+.|||.|..+..+|.-+.+..
T Consensus       458 IFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K  508 (557)
T COG0497         458 IFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEK  508 (557)
T ss_pred             EEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEE
Confidence            699999999999999999999999899999999999999988777776653

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.41  E-value=0.0002  Score=43.29  Aligned_cols=41  Identities=12%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~   41 (79)
                      ++|||+.+||+.....+.+.+++...+.++|++||+++.+.
T Consensus       117 ~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll  157 (325)
T PRK08699        117 ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVL  157 (325)
T ss_pred             EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhCh
Confidence            47999999999999999999998766888999999987664

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=97.37  E-value=0.00046  Score=43.43  Aligned_cols=55  Identities=18%  Similarity=0.362  Sum_probs=45.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccc--cCCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQ--NADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~--~~d~v~~l~~G~i~   55 (79)
                      +.||+.|.||+.+...+..-+..++  .+.|++.+||+++...  +.|.++...-|+..
T Consensus       530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            4699999999999988888887775  4999999999999883  37998888777643

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=97.29  E-value=0.00022  Score=47.85  Aligned_cols=41  Identities=20%  Similarity=0.095  Sum_probs=35.0

Q ss_pred             CCcccccCC-CHHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474          1 MFRLFGSAL-DNESEKLVQAALESACK-GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~l-D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~   41 (79)
                      ++|||+.+| |+.....+.+.+...++ +.+++++||++..+.
T Consensus       692 llDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~  734 (852)
T PRK13891        692 ILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA  734 (852)
T ss_pred             EEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            589999999 78888888888877754 889999999998774

>KOG0063|consensus

Probab=97.29  E-value=0.0005  Score=43.37  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=42.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~   50 (79)
                      +||||.|.||..++......++.+.. ..=+|+|.|+++.+.. .|-++.+.
T Consensus       236 MFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  236 MFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             EecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            58999999999999888888887754 8899999999998865 77777775

>PRK13695 putative NTPase; Provisional

Probab=97.27  E-value=0.00015  Score=39.80  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=37.6

Q ss_pred             CCccc--ccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLF--GSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~--~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      ++||+  +..+++.....+..++   ..+.++|+++|.......++++..+.+|++....+
T Consensus       101 llDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~  158 (174)
T PRK13695        101 IIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTP  158 (174)
T ss_pred             EEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcc
Confidence            58995  3344444334444333   34789999999854444589999999999877644

>PRK14079 recF recombination protein F; Provisional

Probab=97.24  E-value=0.00079  Score=41.04  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=35.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~   55 (79)
                      +||||++.||...+..+...+...  .. + ++|. .+....+++++.+.+|+..
T Consensus       295 LlDd~~seLD~~~~~~l~~~l~~~--~q-~-~it~-t~~~~~~~~~~~~~~~~~~  344 (349)
T PRK14079        295 LVDDFTAELDPRRRGALLALAASL--PQ-A-IVAG-TEAPPGAALTLRIEAGVFT  344 (349)
T ss_pred             EEcccchhcCHHHHHHHHHHHhcC--Cc-E-EEEc-CCCCCCCceEEEEeccEec
Confidence            589999999999988887777533  12 2 3331 2334458999999988764

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.23  E-value=0.00042  Score=39.83  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             CCcccccCCCHHHHHH-HHHHHHHhc--CCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKL-VQAALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~-~~~~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      +||||.++.++..... ....++.+.  .+.++|++||+.+..
T Consensus       115 llDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~  157 (222)
T cd03287         115 ILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG  157 (222)
T ss_pred             EEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence            5899988888765443 344555443  377999999998865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.16  E-value=0.00051  Score=48.18  Aligned_cols=36  Identities=11%  Similarity=0.104  Sum_probs=31.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS   38 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~   38 (79)
                      +||||++++|+.....+..++...  +.++|++++.+.
T Consensus      1282 lLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680      1282 LLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence            589999999999999999988876  778899998763

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.10  E-value=0.00032  Score=48.44  Aligned_cols=47  Identities=26%  Similarity=0.391  Sum_probs=41.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIV   47 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~   47 (79)
                      ||||.-++||..+...+..++.....+.-.|+|||.......+|+.+
T Consensus      1093 vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196        1093 VLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred             eeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHHHe
Confidence            69999999999999999999999988889999999998876666554

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=97.02  E-value=0.00056  Score=45.74  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=33.2

Q ss_pred             CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~   40 (79)
                      ++|||+..|| +.....+.+.+...++ +.+++++||++..+
T Consensus       640 llDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~  681 (811)
T PRK13873        640 ILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADI  681 (811)
T ss_pred             EEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence            5899999999 6678888888877654 88999999998755

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.01  E-value=0.0012  Score=38.13  Aligned_cols=38  Identities=5%  Similarity=0.137  Sum_probs=25.8

Q ss_pred             CCcccccCC----CHHHHHHHHHHHHHhcC-CCEEEEEccCccc
Q psy10474          1 MFRLFGSAL----DNESEKLVQAALESACK-GRTVLMIAHRLST   39 (79)
Q Consensus         1 ~~de~~s~l----D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~   39 (79)
                      |+||||+.+    |+.....+...+..+.+ +.|+ +++|+...
T Consensus       122 VIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~  164 (230)
T PRK08533        122 IIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKE  164 (230)
T ss_pred             EEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccc
Confidence            589999999    76666667777766544 6655 55566543

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=96.56  E-value=0.0021  Score=43.05  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=33.5

Q ss_pred             CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~   40 (79)
                      ++|||+..|| +.....+.+.+...++ +..++++||.++.+
T Consensus       647 ~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~  688 (800)
T PRK13898        647 VLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA  688 (800)
T ss_pred             EEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            5899999999 7778888888877755 88999999998664

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=96.45  E-value=0.0035  Score=35.44  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.4

Q ss_pred             CCcccc-----cCCCHHHHHHHHHHHHHhc
Q psy10474          1 MFRLFG-----SALDNESEKLVQAALESAC   25 (79)
Q Consensus         1 ~~de~~-----s~lD~~~~~~~~~~~~~~~   25 (79)
                      ++||||     ++||+.....+.+.+..++
T Consensus       175 ~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        175 FVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             ecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            589999     9999999999999988763

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.38  E-value=0.014  Score=30.96  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             CCcccccCC----------CHHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSAL----------DNESEKLVQAALESACK-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~l----------D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~   40 (79)
                      |+||++..+          +......+..++....+ +.++|+++|.....
T Consensus        90 viDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          90 ILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             EEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            578888554          33445666666665543 88999999987644

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13166 AAA_13: AAA domain

Probab=96.22  E-value=0.0074  Score=39.80  Aligned_cols=40  Identities=25%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh---cCCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA---CKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~---~~~~tvi~vtH~~~~~   40 (79)
                      |+|-|-|+||......+...+...   ...+.+|+-||++.++
T Consensus       532 ViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~  574 (712)
T PF13166_consen  532 VIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF  574 (712)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence            689999999999999888888877   4578999999999765

>KOG0064|consensus

Probab=96.13  E-value=0.0054  Score=39.84  Aligned_cols=40  Identities=28%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN   42 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~   42 (79)
                      +|||.||++.+.....+.+.....  |.+.|-|+|++.....
T Consensus       635 lLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~  674 (728)
T KOG0064|consen  635 LLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKY  674 (728)
T ss_pred             hhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHH
Confidence            689999999999988888777554  8899999999987643

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.06  E-value=0.0059  Score=35.07  Aligned_cols=50  Identities=12%  Similarity=0.170  Sum_probs=28.9

Q ss_pred             CCcccccCCCH---HHHHHHHHHHHHh-cCCCEEEEEccCccc-------ccc-CCEEEEEe
Q psy10474          1 MFRLFGSALDN---ESEKLVQAALESA-CKGRTVLMIAHRLST-------VQN-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~---~~~~~~~~~~~~~-~~~~tvi~vtH~~~~-------~~~-~d~v~~l~   50 (79)
                      |+||+|+.++.   .....+...+... ..+.|+++++|....       +.. +|.++.++
T Consensus       125 viDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~  186 (234)
T PRK06067        125 IIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR  186 (234)
T ss_pred             EEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence            58999965543   3222332234332 347899999987654       223 56666665

>COG4637 Predicted ATPase [General function prediction only]

Probab=96.03  E-value=0.017  Score=35.30  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=40.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc--CCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN--ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~   50 (79)
                      ++|||-.+|=|..--.+..++.+.++...||++||....+..  ...+++.+
T Consensus       295 ~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~~~  346 (373)
T COG4637         295 LLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFWLD  346 (373)
T ss_pred             EecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEEec
Confidence            589999999999888888888888776689999999887743  45555554

>KOG0962|consensus

Probab=95.49  E-value=0.017  Score=40.67  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=28.6

Q ss_pred             CcccccCCCHHHHHHHHH----HHHHhc--CCCEEEEEccCcccc
Q psy10474          2 FRLFGSALDNESEKLVQA----ALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~----~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      |||||++||..+...+..    ++....  ...-.|++||+-.++
T Consensus      1213 LDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv 1257 (1294)
T KOG0962|consen 1213 LDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFV 1257 (1294)
T ss_pred             ccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHH
Confidence            799999999987654443    333332  377889999998766

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.25  E-value=0.016  Score=33.98  Aligned_cols=49  Identities=22%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             cccCCCHHHHHH-HHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474          5 FGSALDNESEKL-VQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIV   55 (79)
Q Consensus         5 ~~s~lD~~~~~~-~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~   55 (79)
                      +|+.+|+..... +.  +.... .+.|.|+++|.+......+.|.++++|++.
T Consensus       162 ~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~  212 (249)
T cd01128         162 ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK  212 (249)
T ss_pred             eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence            678888543321 22  34443 478999999999999999999999999974

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.16  E-value=0.023  Score=37.43  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=27.9

Q ss_pred             CCcccccCCCHHHHHHHH-HHHHHhcCCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQ-AALESACKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~-~~~~~~~~~~tvi~vtH~~~~~   40 (79)
                      |||+|++.||+..+..+. ..+...  ...||+.+|+-++-
T Consensus       579 iiD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e~~  617 (650)
T TIGR03185       579 IIDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEEVD  617 (650)
T ss_pred             EEcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHhhC
Confidence            589999999998776654 455443  56788888887554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=94.52  E-value=0.032  Score=38.01  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             CCccc---ccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccc
Q psy10474          1 MFRLF---GSALDNESEKLVQAALESACK--GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~---~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~   40 (79)
                      ||||+   |+.+|...  ....+++.+..  +++++++||..+..
T Consensus       691 llDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~el~  733 (854)
T PRK05399        691 LLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHELT  733 (854)
T ss_pred             EEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHHHH
Confidence            68999   77777443  33444444432  57899999996544

>KOG0964|consensus

Probab=94.40  E-value=0.019  Score=39.52  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +|||..++||+..+..+..++.++......|..|-+++.+.-+|.++...
T Consensus      1124 lfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vAdKfygV~ 1173 (1200)
T KOG0964|consen 1124 LFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVADKFYGVK 1173 (1200)
T ss_pred             hHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHHHhhhcee
Confidence            69999999999999999999999887778888888888887788877554

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=93.56  E-value=0.27  Score=28.04  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEEccCc---------ccccc-CCEEEEEe
Q psy10474          9 LDNESEKLVQAALESAC-KGRTVLMIAHRL---------STVQN-ADLIVVLQ   50 (79)
Q Consensus         9 lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~---------~~~~~-~d~v~~l~   50 (79)
                      .+...+..+..++.... .+.|+++++|..         ..+.. +|.++.++
T Consensus       125 ~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       125 DDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            34445556666666654 488999999852         22344 78888885

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>KOG0063|consensus

Probab=93.31  E-value=0.058  Score=34.56  Aligned_cols=51  Identities=16%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh--cCCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA--CKGRTVLMIAHRLSTVQN-ADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~--~~~~tvi~vtH~~~~~~~-~d~v~~l~~   51 (79)
                      +.|||.+-||..++......+.+.  ..++|-.+|.|++--.-. +|+|++...
T Consensus       479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            369999999999887666666543  458899999999866644 899999864

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=93.21  E-value=0.12  Score=29.82  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474          8 ALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         8 ~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      ..|+.....+...+...+  .++++|+++|.....
T Consensus       128 ~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~  162 (239)
T cd01125         128 ENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS  162 (239)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence            468876666666665543  388999999987433

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PF13514 AAA_27: AAA domain

Probab=91.67  E-value=0.28  Score=34.53  Aligned_cols=41  Identities=15%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~   41 (79)
                      |+|.++.+.|..-...+..++.......-||+-||+...+.
T Consensus      1056 IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1056 ILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVE 1096 (1111)
T ss_pred             EeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHH
Confidence            68999999999999999999988888889999999887664

>PF00488 MutS_V: MutS domain V C-terminus

Probab=91.58  E-value=0.32  Score=28.31  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=27.1

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      ++||+..+=++.....+ ...++.+.  .+..++++||..+..
T Consensus       127 liDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~  169 (235)
T PF00488_consen  127 LIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA  169 (235)
T ss_dssp             EEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred             ecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence            58999999999865443 44455443  277889999998765

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=91.34  E-value=0.17  Score=27.84  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=38.7

Q ss_pred             CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l~~   51 (79)
                      ||||...+++..  ....+.+++...-.+..+|+..++++.-  ..+|-|.-|+.
T Consensus       100 VLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~  154 (159)
T cd00561         100 ILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE  154 (159)
T ss_pred             EEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence            689999887554  5677888887766688999999998633  44898887754

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.08  E-value=0.38  Score=31.85  Aligned_cols=39  Identities=13%  Similarity=0.051  Sum_probs=32.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLST   39 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~   39 (79)
                      |+|-|.|++|.........++.... .++.+++.||+--+
T Consensus       560 ViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF  599 (758)
T COG4694         560 VIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYF  599 (758)
T ss_pred             EecCCccccchhHHHHHHHHHHHHHhCceEEEEEecccee
Confidence            6899999999998888888887664 58899999999543

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=91.00  E-value=0.19  Score=28.23  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=40.0

Q ss_pred             CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEEeCc
Q psy10474          1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l~~G   52 (79)
                      ||||...+++..  ....+.+++...-.+..+|+.-+.+..-  ..+|.|.-|+.+
T Consensus       120 VLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~  175 (178)
T PRK07414        120 VLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS  175 (178)
T ss_pred             EEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence            689999888765  5667777887765688999999988643  449999888765

>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family

Probab=90.66  E-value=0.26  Score=33.12  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=32.5

Q ss_pred             CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~   40 (79)
                      ++||++.-++ +.....+...++..++ +..++++||.+..+
T Consensus       634 ~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~  675 (785)
T TIGR00929       634 IIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDA  675 (785)
T ss_pred             EEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            5899999985 6677788888887765 88999999998754

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=90.21  E-value=0.82  Score=30.30  Aligned_cols=50  Identities=14%  Similarity=0.096  Sum_probs=38.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc--CCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN--ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~   50 (79)
                      +++||-..|=|..+..++.++.....+..+|++||....+..  -+.++.+.
T Consensus       306 LiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~lv  357 (581)
T COG3593         306 LIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRLV  357 (581)
T ss_pred             EEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEEE
Confidence            468999999999988888888766546788999999987753  56666543

>PF12846 AAA_10: AAA-like domain

Probab=90.15  E-value=0.22  Score=29.13  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             CCcccccCCCHH-HHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNE-SEKLVQAALESACK-GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~-~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~   41 (79)
                      ++||+..-++.. ....+..++++.++ +..++++||.+..+.
T Consensus       225 ~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~  267 (304)
T PF12846_consen  225 VIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLP  267 (304)
T ss_pred             EeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHh
Confidence            589998888764 45566677777665 899999999997775

>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family

Probab=89.95  E-value=0.28  Score=33.63  Aligned_cols=41  Identities=5%  Similarity=0.104  Sum_probs=32.5

Q ss_pred             CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474          1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~   41 (79)
                      ++||++..|+ +.....+....+..++ +..++++||.+..+.
T Consensus       670 viDEaW~lL~~p~~a~fi~~~~kt~RK~ng~~i~iTQs~~Dll  712 (829)
T TIGR03783       670 LIEEAWKAIASANMAEYIKYLYKTVRKYFGEAIVVTQEVDDII  712 (829)
T ss_pred             EEeCHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEEcCCHHHHh
Confidence            5899999995 5567778888877766 889999999986553

Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.

>KOG0996|consensus

Probab=89.63  E-value=0.17  Score=35.70  Aligned_cols=50  Identities=18%  Similarity=0.242  Sum_probs=40.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      ||||..+|||..+.-.+.+.+.+..+....|+|+=+-..+..+++.+-+.
T Consensus      1222 VMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1222 VMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred             ehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHHhhheeeE
Confidence            69999999999999999999998878788888887666666666665543

>TIGR00152 dephospho-CoA kinase

Probab=89.63  E-value=1.6  Score=24.23  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc--cc-cCCEEEEEeCce
Q psy10474          6 GSALDNESEKLVQAALESACK-GRTVLMIAHRLST--VQ-NADLIVVLQAGQ   53 (79)
Q Consensus         6 ~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~--~~-~~d~v~~l~~G~   53 (79)
                      .+.++|.....+...+..... +.++++.+|.+.+  +. .||.++++..+.
T Consensus        83 e~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~  134 (188)
T TIGR00152        83 NNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP  134 (188)
T ss_pred             HHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence            356788888888777766543 5688999998854  43 499999987654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=88.91  E-value=0.73  Score=29.71  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=29.4

Q ss_pred             cccCCCHHH--HHHHHHHHHHhc-CCCEEEEEccCcc---------cccc-CCEEEEEe
Q psy10474          5 FGSALDNES--EKLVQAALESAC-KGRTVLMIAHRLS---------TVQN-ADLIVVLQ   50 (79)
Q Consensus         5 ~~s~lD~~~--~~~~~~~~~~~~-~~~tvi~vtH~~~---------~~~~-~d~v~~l~   50 (79)
                      +.+++|...  +..+..++..+. .+.|+|+++|...         .... +|.++.|+
T Consensus       142 l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~  200 (509)
T PRK09302        142 LFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR  200 (509)
T ss_pred             HHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence            445555543  455666665554 4899999999764         1233 78888876

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=88.43  E-value=0.34  Score=27.11  Aligned_cols=51  Identities=18%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l~~   51 (79)
                      ||||...+++..  ....+.+++...-.+..+|++.+.++.-  ..+|.|.-|..
T Consensus       102 VLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~  156 (173)
T TIGR00708       102 LLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP  156 (173)
T ss_pred             EehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence            689999888765  5567777887655678899999988643  44999988865

Alternate name: corrinoid adenosyltransferase.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=87.67  E-value=0.21  Score=31.69  Aligned_cols=61  Identities=8%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             CCcccccCCCHH-HHHHHHHHHHHhc-CCCEEEEEc-cCcccccc-CCEEE-EEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNE-SEKLVQAALESAC-KGRTVLMIA-HRLSTVQN-ADLIV-VLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~-~~~~~~~~~~~~~-~~~tvi~vt-H~~~~~~~-~d~v~-~l~~G~i~~~~~~~   61 (79)
                      ++||+...++.. .+..+...+.... .++.+|+++ |.+..+.. .+++. .+..|-++...+|.
T Consensus       199 lIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd  264 (440)
T PRK14088        199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_pred             EEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence            589999888754 4455666665543 366777766 56655543 34443 35566665554443

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=87.09  E-value=1.2  Score=27.87  Aligned_cols=51  Identities=16%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc----cCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ----NADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~----~~d~v~~l~~G~i   54 (79)
                      +||+..|.||..-+..+....   ..+..+++.+-+.+.+.    ...+++...+|++
T Consensus       307 LLDDv~seLD~~Rr~~Ll~~~---~~~~Q~fvT~t~~~~~~~~~~~~~~~f~V~~g~i  361 (363)
T COG1195         307 LLDDVASELDDGRRAALLDTI---ELGVQVFVTTTDLEDIDDNLDENAQMFHVEDGKI  361 (363)
T ss_pred             EechhhHhhCHHHHHHHHhhc---ccCCeEEEEccCHHHhhhhhhccceEEEEeccee
Confidence            589999999999887777662   22445555555555443    2347777788876

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=86.56  E-value=2.4  Score=27.36  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhc-CCCEEEEEccCccc--------c-cc-CCEEEEEe
Q psy10474         13 SEKLVQAALESAC-KGRTVLMIAHRLST--------V-QN-ADLIVVLQ   50 (79)
Q Consensus        13 ~~~~~~~~~~~~~-~~~tvi~vtH~~~~--------~-~~-~d~v~~l~   50 (79)
                      .+..+..++..+. .++|+|+++|+...        + .. +|.|+.++
T Consensus       142 ~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       142 VRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            4455666666554 48999999998754        1 33 68888775

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02746 TraC-F-type type-IV secretion system protein TraC

Probab=86.40  E-value=0.6  Score=31.61  Aligned_cols=40  Identities=18%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~   40 (79)
                      ++||++.-++   +.....+....+..++ +..++++|+.+..+
T Consensus       642 viDEaw~ll~~~~~~~~~~i~~~~r~~RK~g~~~~~~TQ~~~D~  685 (797)
T TIGR02746       642 IIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDF  685 (797)
T ss_pred             EEecHHHHhhcccHHHHHHHHHHHHHHhhcCceEEEEEecHHHh
Confidence            5799999985   5567777888877766 88999999999765

The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=86.11  E-value=0.17  Score=30.56  Aligned_cols=57  Identities=5%  Similarity=0.038  Sum_probs=37.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      ++||+.+       .....++..... +.+++.++|..+.....+|+..+..|++...|.+.+..
T Consensus       223 i~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       223 ILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             EEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence            4678875       223344554444 44568888998855558888888888877766666554

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>KOG0933|consensus

Probab=85.87  E-value=0.75  Score=32.38  Aligned_cols=46  Identities=11%  Similarity=0.239  Sum_probs=35.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI   46 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v   46 (79)
                      ||||..+|||-....-|..++...+.+...|+|+=--..+..++++
T Consensus      1109 ILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1109 ILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred             ehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhhccccchhh
Confidence            7999999999999999999999888888888887333333334443

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=85.82  E-value=0.96  Score=31.23  Aligned_cols=40  Identities=13%  Similarity=0.086  Sum_probs=25.9

Q ss_pred             CCcccccCCCHHHHHHHHH-HHHHhc--CCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQA-ALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~-~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      +|||+..|-++.....+.. +++.+.  .++.++++||..+..
T Consensus       676 llDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~  718 (840)
T TIGR01070       676 LFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT  718 (840)
T ss_pred             EEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence            5899977777765444333 333332  477899999987644

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=85.47  E-value=1.2  Score=27.39  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRL   37 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~   37 (79)
                      |.-+|.++|-|+.+-.+..++.+.+. |..+++-||.-
T Consensus       265 IIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSd  302 (374)
T COG4938         265 IIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSD  302 (374)
T ss_pred             EEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechH
Confidence            35689999999999999999988765 88888888753

>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional

Probab=85.43  E-value=0.62  Score=32.01  Aligned_cols=41  Identities=10%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474          1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~   41 (79)
                      ++||++.-|+   +.....+....+..++ +..++++||.+..+.
T Consensus       664 viDEaw~lL~~~~~~~~~fi~~~~r~~RK~~g~~i~~TQsi~D~~  708 (844)
T PRK13721        664 VIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFD  708 (844)
T ss_pred             EEhhHHHHhccCChHHHHHHHHHHHHHHHhCCeEEEEecCHHHhh
Confidence            4799999994   5567778888877765 888899999987653

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=85.42  E-value=5.7  Score=23.53  Aligned_cols=54  Identities=9%  Similarity=0.105  Sum_probs=34.8

Q ss_pred             HHHhcCCCEEEEEccCccc--c--ccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474         21 LESACKGRTVLMIAHRLST--V--QNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus        21 ~~~~~~~~tvi~vtH~~~~--~--~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +.+...++.+++-+-+-..  .  ...+|++++.+|++++.|.+....-+......++
T Consensus       176 l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L  233 (237)
T PF00837_consen  176 LKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWL  233 (237)
T ss_pred             HHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHH
Confidence            3333357787775544321  1  3379999999999999988766544444554444

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=85.33  E-value=0.61  Score=26.18  Aligned_cols=50  Identities=12%  Similarity=0.113  Sum_probs=27.6

Q ss_pred             CCcccccCCCHHHHH-----HHHHHHHHhc-CCCEEEEEccCccccc----c-CCEEEEEe
Q psy10474          1 MFRLFGSALDNESEK-----LVQAALESAC-KGRTVLMIAHRLSTVQ----N-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~-----~~~~~~~~~~-~~~tvi~vtH~~~~~~----~-~d~v~~l~   50 (79)
                      |+||+..-+.+....     ...+.+...+ .|..++++|+++..+.    . ++..+.+.
T Consensus        84 viDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~  144 (193)
T PF05707_consen   84 VIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR  144 (193)
T ss_dssp             EETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred             EEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence            589999888776542     2223343333 3889999999997652    2 45555553

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=85.33  E-value=0.45  Score=27.05  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=38.5

Q ss_pred             CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCccc-c-ccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLST-V-QNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~   51 (79)
                      ||||...+++..  ....+.+++...-.+..+|++-++.+. + ..+|.|.-|..
T Consensus       120 VLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~  174 (191)
T PRK05986        120 VLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP  174 (191)
T ss_pred             EEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence            689999998765  566777788765557888999888863 3 44898888754

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=84.15  E-value=3.6  Score=23.50  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=16.9

Q ss_pred             CCCEEEEEccCcc--------cccc-CCEEEEEe
Q psy10474         26 KGRTVLMIAHRLS--------TVQN-ADLIVVLQ   50 (79)
Q Consensus        26 ~~~tvi~vtH~~~--------~~~~-~d~v~~l~   50 (79)
                      .+.|+++++|...        .+.. +|.|+.++
T Consensus       155 ~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       155 WNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            4999999999643        1233 67777665

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=83.72  E-value=1.7  Score=27.09  Aligned_cols=39  Identities=10%  Similarity=0.207  Sum_probs=29.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~   40 (79)
                      |+||+. .+++.....+.+.+++...+..+|+++|++..+
T Consensus       146 iIDead-~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~l  184 (365)
T PRK07471        146 IVDTAD-EMNANAANALLKVLEEPPARSLFLLVSHAPARL  184 (365)
T ss_pred             EEechH-hcCHHHHHHHHHHHhcCCCCeEEEEEECCchhc
Confidence            467765 678888888888888766677888999998655

>PRK13853 type IV secretion system protein VirB4; Provisional

Probab=83.70  E-value=1  Score=30.80  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=36.9

Q ss_pred             CCcccccCCCHH-HHHHHHHHHHHhcC-CCEEEEEccCccccc----------cCCEEEEEeCc
Q psy10474          1 MFRLFGSALDNE-SEKLVQAALESACK-GRTVLMIAHRLSTVQ----------NADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~-~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~----------~~d~v~~l~~G   52 (79)
                      ++||++..|+.. ....+.+.+...++ +..++++||.+..+.          .|...++|.+.
T Consensus       632 ~iDEaw~~l~~~~~~~~i~~~~kt~RK~ng~~~~~TQs~~D~~~s~~~~~i~~n~~t~I~Lpn~  695 (789)
T PRK13853        632 SCDEFRAYLLNPKFAAVVDKFLLTVRKNNGMLILATQQPEHVLESPLGASLVAQCMTKIFYPSP  695 (789)
T ss_pred             EEechhHHhCCHHHHHHHHHHHHHHHHcCeEEEEecCCHHHHHcCchHHHHHHhCCeEEEcCCc
Confidence            479998888644 56777777877766 888899999986442          24555566553

>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2

Probab=81.54  E-value=0.64  Score=26.00  Aligned_cols=51  Identities=22%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcc-cc-ccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLS-TV-QNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~-~~-~~~d~v~~l~~   51 (79)
                      ||||...+++..  ....+..++........+|++-++++ .+ ..+|-|.-|..
T Consensus       101 ILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlVTem~~  155 (172)
T PF02572_consen  101 ILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLVTEMRE  155 (172)
T ss_dssp             EEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEEEEEEE
T ss_pred             EEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCeeeeece
Confidence            689998888765  56777788876556788888888886 33 34899988853

5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=81.14  E-value=4.5  Score=28.42  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=38.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l   49 (79)
                      |+|-.+-+.|+.....+++.+..+..+..||+-||+....  ....+++.+
T Consensus       931 i~DD~fVhFD~~R~~r~~e~l~dls~~~QviYFTCHe~~~d~~~s~~vI~l  981 (984)
T COG4717         931 IADDIFVHFDDERAKRMLELLADLSEGNQVIYFTCHEHTCDAFPSSEVITL  981 (984)
T ss_pred             eeccchhccCHHHHHHHHHHHHHhccCCeEEEEEechhhhcccccccceee
Confidence            5688888999999999999999998899999999887764  224444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-19
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-19
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-19
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		4e-16
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		5e-16
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		8e-16
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-15
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-15
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-15
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		3e-15
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		3e-15
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		3e-15
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		4e-15
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		5e-15
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		1e-14
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-14
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-14
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		6e-14
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		1e-13
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		1e-12
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		8e-08
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		4e-05
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		9e-05
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-04
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-04

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 59/71 (83%)
Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 67   KGHYWTLMNQQ 77
            KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 59/71 (83%)
Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 67   KGHYWTLMNQQ 77
            KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 58/72 (80%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE +VQ AL+ A KGRT ++IAHRLST++NADLI+  + GQ+VE+G+H++L+A+
Sbjct: 583 SALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ 642
Query: 67  KGHYWTLMNQQN 78
           +G Y+ L+  Q 
Sbjct: 643 QGLYYDLVTAQT 654

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 53/71 (74%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           S +D ++EK +QAA+    +G+T ++IAHRL+T++NADLI+VL+ G+IVEMG H  L+ K
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579
Query: 67  KGHYWTLMNQQ 77
           +G Y+ L   Q
Sbjct: 580 RGFYYELFTSQ 590

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 52/72 (72%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++Q AL+   K RT L++AHRLST+ +AD IVV++ G IVE G H+ L+AK
Sbjct: 506 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
Query: 67  KGHYWTLMNQQN 78
           +G Y  L + QN
Sbjct: 566 QGAYEHLYSIQN 577

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+E LVQ AL+    GRTVL+IAHRLST++NA+++ VL  G+I E G H+ LL+K
Sbjct: 512 SALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK 571
Query: 67  -KGHYWTLMNQQN 78
             G Y  LMN+Q+
Sbjct: 572 PNGIYRKLMNKQS 584

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD E+E LVQ AL+    GRTVL+IAH LST++NA+++ VL  G+I E G H+ LL+K
Sbjct: 543 SALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSK 602
Query: 67  -KGHYWTLMNQQN 78
             G Y  LMN+Q+
Sbjct: 603 PNGIYRKLMNKQS 615

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 228 PESLYSYLYQ 237

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 234 PESLYSYLYQ 243

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 170 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 230 PESLYSYLYQ 239

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 234 PESLYSYLYQ 243

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 170 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 230 PESLYSYLYQ 239

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K +TVL+IAHRLST++ AD I+V+  G+I+E G H  LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568
Query: 67  KGHYWTL 73
            G Y  L
Sbjct: 569 DGAYAQL 575

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K RT L+IAHRLST++ AD IVV++ G IVE G H  LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568
Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 569 HGVYAQLHKMQ 579

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 48/71 (67%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K RT L+IAHRLST++ AD IVV++ G IVE G H  LL  
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEH 568
Query: 67  KGHYWTLMNQQ 77
           +G Y  L   Q
Sbjct: 569 RGVYAQLHKMQ 579

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IA RLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 228 PESLYSYLYQ 237

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IA RLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67  KGHYWTLMNQ 76
               ++ + Q
Sbjct: 234 PESLYSYLYQ 243

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD  +E+ +QA+L   C  RT +++AHRLSTV NAD I+V++ G IVE G H++LL++
Sbjct: 219 SALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278
Query: 67  KGHY---WTLMNQQ 77
            G Y   W L   Q
Sbjct: 279 GGVYADMWQLQQGQ 292

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           S+LD+++E L Q A+E   K RT+++IAHRLST+ +A+ I++L  G+IVE G HK LL  
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
Query: 67  KGHYWTLMNQQN 78
            G Y  + N Q+
Sbjct: 244 NGEYAEMWNMQS 255

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           ++LD+ESE +VQ AL+S  KGRT L+IAHRLST+ +AD I  ++ GQI   G H  L+A 
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
Query: 67  KGHYWTLMNQQ 77
              Y   +++Q
Sbjct: 228 HPLYAKYVSEQ 238

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
           SALD  S+  V+  L  + +   R+VL+I   LS V+ AD I+ L+ G I E G H+ L+
Sbjct: 183 SALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 242
Query: 65  AKKGHYWTLMN 75
            KKG YW ++ 
Sbjct: 243 EKKGCYWAMVQ 253

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 26  KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
           K +T +++ H +S +   D+I+V+  G+I EMG+++ LLA+ G +
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
           SALD  ++  VQ  L  + +   RTVL+I H+LS  + A  I+ L+ G + E G H  L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65  AKKGHYWTLM 74
            + G Y +++
Sbjct: 245 ERGGCYRSMV 254

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
           SALD  ++  VQ  L  + +   RTVL+I  +LS  + A  I+ L+ G + E G H  L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65  AKKGHYWTLM 74
            + G Y +++
Sbjct: 245 ERGGCYRSMV 254

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
           SALD  ++  VQ  L  + +   RTVL+I  +LS  + A  I+ L+ G + E G H  L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65  AKKGHYWTLM 74
            + G Y +++
Sbjct: 245 ERGGCYRSMV 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-39
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-39
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	6e-36
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-39
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	6e-39
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-38
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-36
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-36
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	3e-36
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-35
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-35
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	5e-30
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-18
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	6e-16
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	7e-10
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	8e-10
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-04

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  129 bits (326), Expect = 2e-39
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233

Query: 67  -KGHYWTLMNQQN 78
            +  Y  L   Q+
Sbjct: 234 PESLYSYLYQLQS 246

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  135 bits (343), Expect = 3e-39
 Identities = 43/71 (60%), Positives = 59/71 (83%)

Query: 7    SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
            SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259

Query: 67   KGHYWTLMNQQ 77
            KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  126 bits (318), Expect = 6e-36
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE +VQAAL+ A +GRT ++IAHRLSTV+NAD+I     G IVE GNH  L+ +
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614

Query: 67  KGHYWTLMNQQN 78
           KG Y+ L+  Q 
Sbjct: 615 KGIYFKLVMTQT 626

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  129 bits (326), Expect = 3e-39
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
           SALD  ++  VQ  L  + +   RTVL+I  +LS  + A  I+ L+ G + E G H  L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244

Query: 65  AKKGHYWTLMNQQ 77
            + G Y +++   
Sbjct: 245 ERGGCYRSMVEAL 257

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  127 bits (322), Expect = 6e-39
 Identities = 34/71 (47%), Positives = 48/71 (67%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           ++LD+ESE +VQ AL+S  KGRT L+IAHRLST+ +AD I  ++ GQI   G H  L+A 
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227

Query: 67  KGHYWTLMNQQ 77
              Y   +++Q
Sbjct: 228 HPLYAKYVSEQ 238

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  127 bits (321), Expect = 1e-38
 Identities = 34/72 (47%), Positives = 50/72 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           S+LD+++E L Q A+E   K RT+++IAHRLST+ +A+ I++L  G+IVE G HK LL  
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243

Query: 67  KGHYWTLMNQQN 78
            G Y  + N Q+
Sbjct: 244 NGEYAEMWNMQS 255

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  127 bits (321), Expect = 2e-36
 Identities = 38/71 (53%), Positives = 50/71 (70%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K +TVL+IAHRLST++ AD I+V+  G+I+E G H  LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 569 DGAYAQLHRIQ 579

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  126 bits (320), Expect = 2e-36
 Identities = 40/71 (56%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K RT L+IAHRLST++ AD IVV++ G IVE G H  LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 569 HGVYAQLHKMQ 579

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  120 bits (303), Expect = 2e-35
 Identities = 34/71 (47%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD  +E+ +QA+L   C  RT +++AHRLSTV NAD I+V++ G IVE G H++LL++
Sbjct: 219 SALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278

Query: 67  KGHYWTLMNQQ 77
            G Y  +   Q
Sbjct: 279 GGVYADMWQLQ 289

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  124 bits (313), Expect = 2e-35
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++Q AL+   K RT L++AHRLST+ +AD IVV++ G IVE G H+ L+AK
Sbjct: 506 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565

Query: 67  KGHYWTLMNQQ 77
           +G Y  L + Q
Sbjct: 566 QGAYEHLYSIQ 576

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  109 bits (275), Expect = 5e-30
 Identities = 35/71 (49%), Positives = 53/71 (74%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           S +D ++EK +QAA+    +G+T ++IAHRL+T++NADLI+VL+ G+IVEMG H  L+ K
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579

Query: 67  KGHYWTLMNQQ 77
           +G Y+ L   Q
Sbjct: 580 RGFYYELFTSQ 590

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 76.8 bits (190), Expect = 1e-18
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
           S++D  +EK +   L+   KG T  +I  ++ T   AD I+VL  G++   G HK LL 
Sbjct: 508 SSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 69.4 bits (170), Expect = 6e-16
 Identities = 11/73 (15%), Positives = 31/73 (42%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           + LD  + ++++  L+ A    TV++   R+  +   D  +V++  ++ +  +   L   
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243

Query: 67  KGHYWTLMNQQNP 79
               +      +P
Sbjct: 244 PADRFVAGFIGSP 256

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 52.9 bits (128), Expect = 3e-10
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 26  KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76
           K +T +++ H +S +   D+I+V+  G+I EMG+++ LLA+ G +   +  
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRT 228

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 52.0 bits (125), Expect = 7e-10
 Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 7   SALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
             LD  +EK + ++ +      +T +++  ++  ++ AD I++L  G     G    L  
Sbjct: 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247

Query: 66  KKGHYWTLMNQQN 78
            +  + + +   +
Sbjct: 248 LRPDFSSKLMGCD 260

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 51.8 bits (125), Expect = 8e-10
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 7   SALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
             LD  +EK + ++ +      +T +++  ++  ++ AD I++L  G     G    L  
Sbjct: 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218

Query: 66  KKGHYWTLM 74
            +  + + +
Sbjct: 219 LQPDFSSKL 227

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65
           S LD      +  A+    K + V+++ H L  +    DLI ++     V     KS  A
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226

Query: 66  KKG 68
           + G
Sbjct: 227 RVG 229

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 7   SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56
           S LD +        + S     + V+ + H LS +   +D + ++     V 
Sbjct: 250 SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56
           S LD      V   +   A +G+ VL++ H L+ +   +D+I V+     V 
Sbjct: 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.8
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.79
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.78
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.78
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.78
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.77
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.77
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.77
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.76
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.75
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.75
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.75
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.75
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.74
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.74
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.74
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.73
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.73
1g6h_A	257	High-affinity branched-chain amino acid transport	99.73
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.73
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.72
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.72
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.71
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.71
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.71
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.71
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.71
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.71
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.71
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.7
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.7
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.7
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.7
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.7
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.69
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.69
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.69
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.68
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.67
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.66
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.65
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.65
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.64
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.6
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.56
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.54
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.54
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.54
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.53
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.51
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.51
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.5
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.5
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.48
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.47
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.42
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.39
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.39
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.37
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.36
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.32
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.3
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.28
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.24
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.23
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.19
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.08
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.89
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.89
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.76
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.57
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.55
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.52
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.38
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.35
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.3
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.28
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.26
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.21
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.98
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.85
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.83
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.72
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.6
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.51
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.46
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.42
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.4
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.35
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.31
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.24
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.97
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.97
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.75
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.74
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.61
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.57
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.56
2og2_A	359	Putative signal recognition particle receptor; nuc	96.24
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.95
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.7
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.26
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.2
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.81
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.66
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.4
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.18
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	92.42
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.35
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	91.17
2r6a_A	454	DNAB helicase, replicative helicase; replication,	90.86
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	90.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	90.5
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	88.24
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	84.75
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	83.03
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	82.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	81.13
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	80.59

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.82  E-value=3.8e-20  Score=108.16  Aligned_cols=75  Identities=44%  Similarity=0.689  Sum_probs=67.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      |||||||+||+.+...+.+.+.....++|+|+|+|+++.+..||+|++|++|++++.|++.++....+.+..++.
T Consensus       213 lLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~  287 (306)
T 3nh6_A          213 LLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQ  287 (306)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence            689999999999999999999888778999999999999977999999999999999999998876666666553

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.80  E-value=5.5e-20  Score=122.15  Aligned_cols=76  Identities=50%  Similarity=0.753  Sum_probs=64.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      |||||||+||+.++..+++.+++..+++|+|+|+|+++.+..||+|++|++|++++.|++.++.+..+.++.+++.
T Consensus      1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~ 1315 (1321)
T 4f4c_A         1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQK 1315 (1321)
T ss_dssp             EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC---------
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence            6899999999999999999999888899999999999999999999999999999999999999888888887653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.79  E-value=6.8e-19  Score=109.63  Aligned_cols=76  Identities=49%  Similarity=0.700  Sum_probs=68.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++..
T Consensus       500 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~  575 (578)
T 4a82_A          500 ILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI  575 (578)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred             EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence            5899999999999999999998887899999999999998779999999999999999999998877777776643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.78  E-value=1.5e-18  Score=98.84  Aligned_cols=74  Identities=51%  Similarity=0.779  Sum_probs=63.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~   74 (79)
                      +|||||++||+..+..+.+.+.....++|+|++||+++.+..||++++|++|+++..|++.++... ...+..++
T Consensus       168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~  242 (247)
T 2ff7_A          168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY  242 (247)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHH
Confidence            589999999999999999999877668999999999998866999999999999999999888765 34444444

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.78  E-value=1.5e-18  Score=99.51  Aligned_cols=74  Identities=45%  Similarity=0.672  Sum_probs=63.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +|||||++||+..+..+.+.+....+++|+|++||++..+..||++++|++|+++..|++.++......+...+
T Consensus       178 lLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~  251 (260)
T 2ghi_A          178 IFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW  251 (260)
T ss_dssp             EEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHH
Confidence            58999999999999999999988767899999999999886699999999999999999888765444444443

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.78  E-value=7.2e-19  Score=109.73  Aligned_cols=75  Identities=29%  Similarity=0.446  Sum_probs=67.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus       502 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~  576 (587)
T 3qf4_A          502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYE  576 (587)
T ss_dssp             EEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence            589999999999999999999888789999999999999878999999999999999999998876666665543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.77  E-value=8.1e-19  Score=101.33  Aligned_cols=66  Identities=21%  Similarity=0.344  Sum_probs=59.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+..+. + +.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus       166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            5899999999999999999988765 3 8999999999999976 999999999999999999887653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.77  E-value=9.3e-19  Score=109.39  Aligned_cols=75  Identities=45%  Similarity=0.769  Sum_probs=67.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus       514 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  588 (598)
T 3qf4_B          514 ILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFT  588 (598)
T ss_dssp             EECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHH
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence            589999999999999999999888789999999999999877999999999999999999999877666666653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.77  E-value=1.7e-18  Score=99.76  Aligned_cols=74  Identities=32%  Similarity=0.484  Sum_probs=63.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +|||||++||+..+..+.+.+.....  ++|+|++||+++.+..||++++|++|+++..|++.++......+..++
T Consensus       179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  254 (271)
T 2ixe_A          179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV  254 (271)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence            58999999999999999999988753  899999999999886699999999999999999888766555555554

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.77  E-value=2.3e-18  Score=107.34  Aligned_cols=75  Identities=52%  Similarity=0.684  Sum_probs=67.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+.+..+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus       503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  577 (582)
T 3b60_A          503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK  577 (582)
T ss_dssp             EEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred             EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHH
Confidence            589999999999999999999887779999999999998877999999999999999999998776666666654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.76  E-value=2.8e-18  Score=106.94  Aligned_cols=75  Identities=49%  Similarity=0.701  Sum_probs=67.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      +||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus       503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  577 (582)
T 3b5x_A          503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHR  577 (582)
T ss_pred             EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence            589999999999999999999887779999999999998877999999999999999999998876666666654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.75  E-value=4.3e-18  Score=113.03  Aligned_cols=76  Identities=55%  Similarity=0.819  Sum_probs=69.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      |||||||+||+.++..+.+.+.....++|+|+|+|+++.+..||++++|++|++++.|++.++....+.++.+++.
T Consensus      1194 iLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~ 1269 (1284)
T 3g5u_A         1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV 1269 (1284)
T ss_dssp             EEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence            6899999999999999999998877799999999999999779999999999999999999998888888887653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.75  E-value=1.2e-18  Score=103.73  Aligned_cols=68  Identities=22%  Similarity=0.399  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      +||||||+||+..+..+.+++..+.  .+.|+|++||+++.+.. ||++++|++|++++.|++.++...+.
T Consensus       186 LlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~  256 (366)
T 3tui_C          186 LCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK  256 (366)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCC
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            5899999999999999999998774  38999999999999976 99999999999999999988876543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.75  E-value=2.3e-18  Score=114.52  Aligned_cols=75  Identities=52%  Similarity=0.837  Sum_probs=69.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      |||||||+||+.++..+.+.+....+++|+|+|+|+++.+..||+|++|++|++++.|++.++....+.+..++.
T Consensus       577 iLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~  651 (1321)
T 4f4c_A          577 LLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVT  651 (1321)
T ss_dssp             EEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHH
T ss_pred             EEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHH
Confidence            689999999999999999999988899999999999999999999999999999999999999887777776653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.75  E-value=4.7e-18  Score=96.34  Aligned_cols=74  Identities=28%  Similarity=0.474  Sum_probs=61.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHH---HhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALE---SACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~---~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +|||||++||+..+..+.+.+.   ....++|+|++||+++.+..||++++|++|+++..|++.++......+..++
T Consensus       150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  226 (237)
T 2cbz_A          150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL  226 (237)
T ss_dssp             EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence            5899999999999999888874   3345889999999999886699999999999999999988766555555544

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.74  E-value=2.2e-18  Score=99.13  Aligned_cols=65  Identities=25%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+.+  +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       170 llDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~  237 (266)
T 4g1u_C          170 FLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN  237 (266)
T ss_dssp             EECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence            58999999999999999999987743  5799999999999975 99999999999999999888754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.74  E-value=3.6e-18  Score=102.21  Aligned_cols=70  Identities=24%  Similarity=0.335  Sum_probs=61.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+...
T Consensus       156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~  228 (381)
T 3rlf_A          156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR  228 (381)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBH
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccH
Confidence            5899999999999999999888764 3 8999999999999866 9999999999999999999987655543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.74  E-value=5.6e-18  Score=100.76  Aligned_cols=70  Identities=20%  Similarity=0.352  Sum_probs=59.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-c-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +||||||+||+..+..+...+... . .+.|+|++||+++++.. ||++++|++|+++..|++.++...+...
T Consensus       161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~  233 (359)
T 3fvq_A          161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL  233 (359)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccH
Confidence            589999999999999888755543 3 48999999999999866 9999999999999999999987665543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.73  E-value=7.6e-18  Score=101.11  Aligned_cols=71  Identities=14%  Similarity=0.257  Sum_probs=63.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +||||||+||+..+..+...+.+...+.|+|++||+++.+..||++++|++|+++..|++.++...+...+
T Consensus       178 LLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~  248 (390)
T 3gd7_A          178 LLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF  248 (390)
T ss_dssp             EEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHH
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchH
Confidence            58999999999999999999987767899999999998776799999999999999999999887665543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.73  E-value=6.6e-18  Score=97.03  Aligned_cols=67  Identities=24%  Similarity=0.428  Sum_probs=59.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++...+
T Consensus       182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  250 (263)
T 2olj_A          182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP  250 (263)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            5899999999999999999988764 48999999999999875 9999999999999999988876543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.73  E-value=8.2e-18  Score=96.27  Aligned_cols=62  Identities=26%  Similarity=0.277  Sum_probs=56.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~   62 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|+++..|++.+
T Consensus       176 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            5899999999999999999988764 48999999999999865 99999999999999888877

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.73  E-value=5.6e-18  Score=97.23  Aligned_cols=66  Identities=23%  Similarity=0.421  Sum_probs=59.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.... ++.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus       176 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  243 (262)
T 1b0u_A          176 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  243 (262)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            5899999999999999999988764 48999999999999865 999999999999999998887654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.73  E-value=1.5e-18  Score=98.60  Aligned_cols=74  Identities=46%  Similarity=0.631  Sum_probs=62.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      +|||||++||+..+..+.+.+.....++|+|++||+++.+..||++++|++|+++..|++.++......+..++
T Consensus       162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  235 (243)
T 1mv5_A          162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV  235 (243)
T ss_dssp             EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence            58999999999999999888887667899999999998876699999999999999999888765444444444

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.72  E-value=7e-18  Score=95.83  Aligned_cols=66  Identities=26%  Similarity=0.334  Sum_probs=58.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+.+.... + +.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus       149 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  217 (240)
T 2onk_A          149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA  217 (240)
T ss_dssp             EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            5899999999999999999988764 3 8999999999998865 999999999999999998887643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.72  E-value=6.3e-18  Score=95.72  Aligned_cols=63  Identities=17%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+..+. + +.|+|++||+++.+..||++++|++|+++..++..++
T Consensus       168 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence            5899999999999999999998774 3 8999999999996655999999999999988766553

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.71  E-value=1.8e-17  Score=95.29  Aligned_cols=65  Identities=31%  Similarity=0.381  Sum_probs=58.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  227 (266)
T 2yz2_A          161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE  227 (266)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            5899999999999999999988774 48999999999999876 99999999999998888777654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.71  E-value=1.2e-17  Score=94.87  Aligned_cols=65  Identities=25%  Similarity=0.243  Sum_probs=58.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... .++|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            5899999999999999999988775 58999999999988865 99999999999999888877754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.71  E-value=3.8e-17  Score=93.98  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=56.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc--CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+....+ ++|+|++||+++.+..  ||++++|++|+++..|++.++.
T Consensus       187 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          187 ILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            58999999999999999999988754 8999999999998854  8999999999999988877653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.71  E-value=1.8e-17  Score=98.73  Aligned_cols=69  Identities=25%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+..+. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus       156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~  227 (362)
T 2it1_A          156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY  227 (362)
T ss_dssp             EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence            5899999999999999999888764 3 8999999999998865 999999999999999999988765543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.71  E-value=2e-17  Score=98.45  Aligned_cols=69  Identities=20%  Similarity=0.322  Sum_probs=60.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus       156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~  227 (359)
T 2yyz_A          156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN  227 (359)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence            5899999999999999999888764 3 8999999999998865 999999999999999999988765544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.71  E-value=2.1e-17  Score=98.20  Aligned_cols=68  Identities=21%  Similarity=0.388  Sum_probs=60.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      +||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+.
T Consensus       168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~  238 (355)
T 1z47_A          168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG  238 (355)
T ss_dssp             EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            5899999999999999999888764 3 8999999999999865 99999999999999999988876543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.71  E-value=2e-17  Score=98.81  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus       162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~  233 (372)
T 1g29_1          162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN  233 (372)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCccc
Confidence            5899999999999999999888764 3 8999999999999865 999999999999999999988765544

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.70  E-value=1.8e-17  Score=94.94  Aligned_cols=64  Identities=30%  Similarity=0.409  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus       169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence            5899999999999999999988764 48999999999999876 9999999999999988887764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.70  E-value=1.4e-17  Score=93.99  Aligned_cols=70  Identities=17%  Similarity=0.252  Sum_probs=57.6

Q ss_pred             CCcccccCCCHHHHHHHHHH-HHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~-~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +|||||++||+..+..+.+. +.....++|+|++||+++.+..||++++|++|+++..|++.++......+
T Consensus       153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  223 (229)
T 2pze_A          153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF  223 (229)
T ss_dssp             EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CH
T ss_pred             EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence            58999999999999998886 34444588999999999887669999999999999999988876543333

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.70  E-value=1.8e-17  Score=98.34  Aligned_cols=69  Identities=25%  Similarity=0.324  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+.++.  .+.|+|++||+++++.. ||++++|++|++...|++.++...+..
T Consensus       150 LLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~  221 (348)
T 3d31_A          150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE  221 (348)
T ss_dssp             EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCT
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCccc
Confidence            5899999999999999999888764  38999999999998865 999999999999999999988765443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.70  E-value=2.7e-17  Score=98.23  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+..+. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus       164 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~  235 (372)
T 1v43_A          164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS  235 (372)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence            5899999999999999999888764 3 8999999999998865 999999999999999999988765544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.70  E-value=7.5e-17  Score=92.01  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=55.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc--CCEEEEEeCceEeeecChh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHK   61 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~   61 (79)
                      +|||||++||+..+..+.+.+.... .++|+|++||+++.+..  ||++++|++|+++..|++.
T Consensus       166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            5899999999999999999998875 48999999999998865  4999999999999988876

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.69  E-value=2e-17  Score=98.24  Aligned_cols=69  Identities=23%  Similarity=0.324  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus       163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~  234 (353)
T 1oxx_K          163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS  234 (353)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence            5899999999999999999888764 3 8999999999998865 999999999999999999988765443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.69  E-value=3.2e-17  Score=108.93  Aligned_cols=74  Identities=54%  Similarity=0.775  Sum_probs=66.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM   74 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~   74 (79)
                      |||||||+||+.+...+.+.+....+++|+|+|+|+++.+..||++++|++|++++.|++.++....+.+..++
T Consensus       549 iLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~  622 (1284)
T 3g5u_A          549 LLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV  622 (1284)
T ss_dssp             EEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHH
Confidence            68999999999999999999988778999999999999998899999999999999999999887666655543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.69  E-value=2.3e-17  Score=94.12  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=57.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... ++.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            5899999999999999999988774 48999999999999855 99999999999999888877653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.68  E-value=3.4e-17  Score=94.71  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=57.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEE--EEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTV--LMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tv--i~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..... +.|+  |++||+++.+.. ||++++|++|+++..|++.++..
T Consensus       184 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  252 (279)
T 2ihy_A          184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT  252 (279)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            58999999999999999998887644 8899  999999999865 99999999999999888877643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.68  E-value=4.3e-17  Score=91.72  Aligned_cols=59  Identities=15%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||++||+..+..+.+.+.... ++.|+|++||+++.+..||++++|++|+++..|+
T Consensus       163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            5899999999999999999888764 4899999999998875599999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.67  E-value=1.7e-16  Score=91.14  Aligned_cols=62  Identities=11%  Similarity=0.102  Sum_probs=55.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CC-EEEEEeCceEeeecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-AD-LIVVLQAGQIVEMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d-~v~~l~~G~i~~~~~~~~~~   64 (79)
                      +|||||++||+..+..+.+.+.....  |+|++||+++.+.. || ++++|++|+++..|++.++.
T Consensus       151 lLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          151 GLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             EEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            58999999999999999999987754  99999999998865 99 99999999999999887765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.66  E-value=7.7e-17  Score=92.14  Aligned_cols=64  Identities=22%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... + +.|+|++||+++.+.. ||++++|++|+ +..|++.++..
T Consensus       151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~  217 (253)
T 2nq2_C          151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT  217 (253)
T ss_dssp             EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence            5899999999999999999988764 4 8999999999999865 99999999999 88888777643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.65  E-value=2.8e-16  Score=99.22  Aligned_cols=66  Identities=27%  Similarity=0.415  Sum_probs=59.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+.....+.+++..+. .+.|+|+|||+++.+..||++++|      ++|+++..|++.++...
T Consensus       569 llDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~  641 (670)
T 3ux8_A          569 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  641 (670)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence            5899999999999999999988764 489999999999988669999999      89999999999887643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.65  E-value=3.1e-16  Score=101.67  Aligned_cols=70  Identities=27%  Similarity=0.424  Sum_probs=62.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      ||||||++||+.....+.+.+..+. .|.|+|+|+|+++.+..||++++|      ++|++++.|++.++...+..+
T Consensus       831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy  907 (916)
T 3pih_A          831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY  907 (916)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence            6899999999999999999988774 489999999999988779999999      899999999999988765443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.64  E-value=1.8e-16  Score=92.14  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=55.7

Q ss_pred             CCcccccCCCHHHHHHHHHHH-HHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~-~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+ .....++|+|++||+++.+..||++++|++|+++..|++.++..
T Consensus       182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence            589999999999999888863 34445889999999998876699999999999999998887653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.60  E-value=7.8e-16  Score=97.22  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~   68 (79)
                      +|||||++||+.....+.+.+..+. .+.|+|+|||+++.+..||++++|      ++|+++..|++.++.....
T Consensus       227 lLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~  301 (670)
T 3ux8_A          227 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN  301 (670)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence            5899999999999999999888764 489999999999977669999999      8999999999988866543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.56  E-value=4.8e-15  Score=96.21  Aligned_cols=67  Identities=22%  Similarity=0.343  Sum_probs=60.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~   67 (79)
                      ||||||++||+.....+.+.+..+.. |.|+|+|+|+++.+..+|+++.|      .+|+++..|++.++....
T Consensus       489 lLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~  562 (916)
T 3pih_A          489 VLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP  562 (916)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence            58999999999999999999988764 89999999999888779999999      899999999999886543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.54  E-value=6.1e-15  Score=87.88  Aligned_cols=56  Identities=18%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~   56 (79)
                      +|||||++||+.....+...+..+. .+.|+|+|||+++....+|++++|++|+++.
T Consensus       308 llDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          308 FIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             EEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence            5899999999999999999988775 4899999999999866699999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.54  E-value=8.8e-15  Score=94.37  Aligned_cols=67  Identities=18%  Similarity=0.328  Sum_probs=59.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~   67 (79)
                      ||||||++||+.....+.+++..+. .|.|+|+++|+++.+..||++++|      ++|+++..|++.++....
T Consensus       756 ILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~  829 (842)
T 2vf7_A          756 VLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA  829 (842)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence            6999999999999999999888764 589999999999999669999999      689999999998886543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.54  E-value=1.3e-14  Score=94.47  Aligned_cols=67  Identities=28%  Similarity=0.425  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~   67 (79)
                      ||||||++||+.....+.+.+..+. .|.|+|+++|+++.+..||++++|      ++|+++..|++.++....
T Consensus       871 ILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~  944 (972)
T 2r6f_A          871 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK  944 (972)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCT
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCc
Confidence            6999999999999999999888764 589999999999988669999999      689999999998876543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.54  E-value=3.5e-15  Score=93.65  Aligned_cols=66  Identities=17%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+++.++.  .+.|+|++||+++.+.. ||++++|++  |++...|++.++...
T Consensus       490 lLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          490 LIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             EECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            5899999999999999999988763  38999999999999976 999999986  888888998887653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.51  E-value=9e-15  Score=95.14  Aligned_cols=65  Identities=20%  Similarity=0.379  Sum_probs=58.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+.....+...+..+.. |.|+|+|+|+++.+..+|+++.|      ++|+++..|++.++..
T Consensus       529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence            69999999999999999988887764 99999999999988779999999      7899999999888754

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.50  E-value=5.2e-14  Score=84.49  Aligned_cols=57  Identities=18%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE----eCceEeee
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL----QAGQIVEM   57 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l----~~G~i~~~   57 (79)
                      ||||||++||+.....+.+.+..+.++.++|+|||++..+..||+++++    ++|+++..
T Consensus       320 lLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          320 VFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             EESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEE
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEE
Confidence            6899999999999999999998887789999999999877669999999    99988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.50  E-value=1.2e-14  Score=90.26  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=55.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~~~~~~   65 (79)
                      ||||||++||+..+..+.+.+..+.  .+.|+|++||+++++.. ||++++|++  |++...|++.++..
T Consensus       424 lLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          424 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            6899999999999999999998764  38999999999999976 999999985  67777788766543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.49  E-value=3.5e-14  Score=91.63  Aligned_cols=66  Identities=21%  Similarity=0.378  Sum_probs=58.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~   66 (79)
                      ||||||++||+.....+...+..+.. |.|+|+|+|+++.+..+|+++.|      ++|+++..|++.++...
T Consensus       404 ILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          404 VLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             EeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            69999999999999999998887754 99999999999977679999999      78999999999887654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.48  E-value=6.2e-14  Score=91.54  Aligned_cols=62  Identities=18%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL   64 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~   64 (79)
                      +|||||++||+.....+.+.+..  .+.|+|++||++..+.. ||++++|++|+++ ..|++.++.
T Consensus       571 LLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~  634 (986)
T 2iw3_A          571 LLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV  634 (986)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred             EEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence            58999999999999999999887  68999999999999976 9999999999996 578887764

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.47  E-value=1.8e-13  Score=72.87  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=44.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe--Cce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ--AGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~--~G~   53 (79)
                      +|||||++||+.....+.+.+.... .+.|+|++||++.....||++++++  +|.
T Consensus        86 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~  141 (148)
T 1f2t_B           86 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGS  141 (148)
T ss_dssp             EEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTE
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCe
Confidence            5899999999999999999988764 4889999999995444599999994  454

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.47  E-value=4e-14  Score=88.90  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+..+.  .+.|+|+++|++..+.. ||++++|++  |.+...|++.++..
T Consensus       494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            5899999999999999999998764  48999999999999976 999999985  66667787766543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.42  E-value=1.2e-13  Score=85.71  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=47.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+.+.+..+..+.|+|+|+|+++++.. ||+++++++|.
T Consensus       161 llDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          161 IFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            589999999999999999999888679999999999999866 99999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.41  E-value=1.2e-13  Score=85.80  Aligned_cols=60  Identities=23%  Similarity=0.266  Sum_probs=50.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~   60 (79)
                      +|||||++||+..+..+.+.+.++.  .+.|+|+|||+++.+.. ||++++|++  |.....+.+
T Consensus       408 lLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~  472 (538)
T 3ozx_A          408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSP  472 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCCh
Confidence            5899999999999999999998764  48999999999999976 999999986  334444444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.39  E-value=2.9e-13  Score=85.07  Aligned_cols=53  Identities=21%  Similarity=0.269  Sum_probs=47.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~   53 (79)
                      +|||||++||+.....+...+..+.. +.|+|+++|+++++.. +|++++|++|.
T Consensus       244 llDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          244 MFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             EEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            58999999999999999999988754 8999999999999976 99999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.39  E-value=1.4e-13  Score=85.45  Aligned_cols=52  Identities=25%  Similarity=0.370  Sum_probs=46.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G   52 (79)
                      ||||||++||+..+..+.+.+..+. .+.|+|+++|++.++.. ||++++|++|
T Consensus       181 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          181 FFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            6899999999999999998888764 48999999999999876 9999999754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.37  E-value=2.1e-13  Score=89.14  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=48.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~   59 (79)
                      ||||||++||+.....+...+...  +.|+|++||+++++.. ||++++|++|+++..|.
T Consensus       924 LLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          924 VLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             EEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            689999999999988888888654  6799999999999865 99999999999876553

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.36  E-value=4.2e-13  Score=84.35  Aligned_cols=52  Identities=25%  Similarity=0.372  Sum_probs=46.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G   52 (79)
                      +|||||++||+..+..+.+.+..+. .+.|+|+++|++..+.. +|++++|+++
T Consensus       251 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            5899999999999999999888764 48999999999998866 9999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.32  E-value=1.1e-13  Score=77.52  Aligned_cols=53  Identities=11%  Similarity=0.089  Sum_probs=43.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i   54 (79)
                      +|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. +|+++++ .|+|
T Consensus       156 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             EEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            5899999999999999999888765 37899999999999977 6776654 4554

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.30  E-value=8e-12  Score=73.32  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEE--EEEeCceEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI--VVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v--~~l~~G~i~   55 (79)
                      +|||||++||+.....+...+.....+.++|++||++.....||++  +.+.+|...
T Consensus       246 llDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~  302 (322)
T 1e69_A          246 VLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA  302 (322)
T ss_dssp             EEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence            5899999999999999999988876688999999997655569986  777777653

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.28  E-value=1.7e-12  Score=80.21  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G   52 (79)
                      ||||||++||+.....+...+..+..+.++|+|||++..+..||+++++.++
T Consensus       422 ilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          422 VFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             EECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            5899999999999999999888776689999999999877679999999654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.24  E-value=1.3e-11  Score=67.19  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=46.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE--eCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL--QAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l--~~G~i   54 (79)
                      +|||||++||+.....+...+.....+.++|+++|+......+|+++.+  .+|..
T Consensus        91 lLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s  146 (173)
T 3kta_B           91 LFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVS  146 (173)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEE
T ss_pred             EECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCEE
Confidence            5899999999999999999998887778999999998776679999855  46654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.23  E-value=1.7e-11  Score=72.36  Aligned_cols=50  Identities=18%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +|||||++||+.....+...+.... .+.++|++||+......||+++.+.
T Consensus       277 llDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~  327 (339)
T 3qkt_A          277 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS  327 (339)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence            5899999999999999988888764 4789999999976555599999885

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.19  E-value=4.8e-11  Score=71.20  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      +|||||++||+..+..+.+.+....  .|+|++|| ++.  .+++++++++|++...|++.++
T Consensus       297 LLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          297 LLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             EECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEEEETTEEEECCCTTTS
T ss_pred             EEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEEEECCEEEecCCHHHH
Confidence            5899999999999999999887764  78889999 444  7899999999999998887654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.08  E-value=2.2e-10  Score=68.33  Aligned_cols=51  Identities=14%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+.....+...+.....+.++|++||++.....+|+++++..
T Consensus       310 llDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~k  360 (371)
T 3auy_A          310 ILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKK  360 (371)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEEE
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEEe
Confidence            589999999999999999998876556799999999875455999999973

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.89  E-value=2.3e-09  Score=64.95  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=43.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +||||+++||+.....+...+..... +.++|++||+......||+++.+.
T Consensus       360 llDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~  410 (430)
T 1w1w_A          360 VLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY  410 (430)
T ss_dssp             EESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred             EeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence            58999999999999999998887653 789999999976666699999886

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.89  E-value=2e-10  Score=70.40  Aligned_cols=59  Identities=8%  Similarity=0.062  Sum_probs=47.6

Q ss_pred             CCcc-cccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc------cccc-CCE-----EEEEe-CceEeeecChhHH
Q psy10474          1 MFRL-FGSALDNESEKLVQAALESACKGRTVLMIAHRLS------TVQN-ADL-----IVVLQ-AGQIVEMGNHKSL   63 (79)
Q Consensus         1 ~~de-~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~------~~~~-~d~-----v~~l~-~G~i~~~~~~~~~   63 (79)
                      +||| ||++||+. ...+.+++...  +.|+|+++|+..      .+.. +|+     +++|+ +|+++ .+++.++
T Consensus       264 lLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          264 IVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             EEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             EEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence            5899 99999999 66666666553  678999999988      5544 898     99999 99998 7877665

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.87  E-value=6.7e-11  Score=63.92  Aligned_cols=45  Identities=11%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             CCcccccCCCHH----------------HHHHHHHHHHHhc-CCCEEEEEccCccccccCCE
Q psy10474          1 MFRLFGSALDNE----------------SEKLVQAALESAC-KGRTVLMIAHRLSTVQNADL   45 (79)
Q Consensus         1 ~~de~~s~lD~~----------------~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~   45 (79)
                      +|||||++||+.                ....+.+.+.... +|.|+|+++|+++.+..+++
T Consensus       106 llDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~  167 (171)
T 4gp7_A          106 VFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVF  167 (171)
T ss_dssp             EECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEE
T ss_pred             EEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhh
Confidence            589999999999                4466666665443 48999999999988855433

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.85  E-value=4.5e-10  Score=73.53  Aligned_cols=59  Identities=12%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      +|||||+|+|+.....+ ..+++.+.  .++++|++||+.+....++++..+.+|++...+.
T Consensus       746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~  807 (934)
T 3thx_A          746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT  807 (934)
T ss_dssp             EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEec
Confidence            58999999999977666 66666553  3899999999987776689888888888765443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.57  E-value=8.7e-10  Score=61.01  Aligned_cols=51  Identities=10%  Similarity=-0.014  Sum_probs=40.4

Q ss_pred             CCcccccCC----CHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474          1 MFRLFGSAL----DNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~l----D~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~   51 (79)
                      +||||++++    |+..+..+...+.+..  .+.|+|+++|+++.+.. ||++++|..
T Consensus       146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~  203 (207)
T 1znw_A          146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA  203 (207)
T ss_dssp             HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence            479999998    6778888888877664  38899999999999966 999988843

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.55  E-value=3.3e-08  Score=54.84  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=38.5

Q ss_pred             CCcccccCC--CHHHHHHHHHHHHHhc--CCCEEEEEccCc--------ccccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSAL--DNESEKLVQAALESAC--KGRTVLMIAHRL--------STVQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~l--D~~~~~~~~~~~~~~~--~~~tvi~vtH~~--------~~~~~-~d~v~~l~~G   52 (79)
                      |+||||+.+  |+.....+...+....  .+.++|+++|+.        ..+.. ||++++++..
T Consensus       128 ilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          128 VIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             EEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             EEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence            589999888  9877666666666553  488999999998        44655 9999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.54  E-value=5.1e-08  Score=60.50  Aligned_cols=52  Identities=15%  Similarity=0.175  Sum_probs=43.2

Q ss_pred             CCcccccC-----CCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc---------cc-CCEEEEEeCc
Q psy10474          1 MFRLFGSA-----LDNESEKLVQAALESACK-GRTVLMIAHRLSTV---------QN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~-----lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~---------~~-~d~v~~l~~G   52 (79)
                      +|||||+.     +|+..+..+..++..+.. +.|+|+++|+++.+         .. ||++++|++|
T Consensus       143 ilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~  210 (525)
T 1tf7_A          143 SIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV  210 (525)
T ss_dssp             EEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred             EECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence            58999984     588888888888877654 89999999999874         34 9999999883

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.52  E-value=2.7e-08  Score=61.73  Aligned_cols=52  Identities=23%  Similarity=0.119  Sum_probs=44.0

Q ss_pred             CCcccccCCCHH-----HHHHHHHHHHHhc-CCCEEEEEccCc----------ccccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNE-----SEKLVQAALESAC-KGRTVLMIAHRL----------STVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~-----~~~~~~~~~~~~~-~~~tvi~vtH~~----------~~~~~-~d~v~~l~~G~   53 (79)
                      |+| ||++||..     .+..+..++..+. .+.|+|+++|+.          ..+.. +|++++|+.|+
T Consensus       376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            589 99999998     7888888877664 489999999998          66655 99999998876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.45  E-value=6.5e-08  Score=53.90  Aligned_cols=46  Identities=9%  Similarity=0.059  Sum_probs=27.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +|||||++    .+..+.+.+.....+.|+| +||+++.+..   .....+|..
T Consensus       127 lLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~  172 (208)
T 3b85_A          127 ILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR  172 (208)
T ss_dssp             EECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred             EEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence            58999999    7777777777664488999 9999987754   223455543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.38  E-value=2.5e-07  Score=53.48  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=34.9

Q ss_pred             CCcccccCC------CH-HHHHHHHHHHHHhc-C-CCEEEEEccCc--c--------------------cccc-CCEEEE
Q psy10474          1 MFRLFGSAL------DN-ESEKLVQAALESAC-K-GRTVLMIAHRL--S--------------------TVQN-ADLIVV   48 (79)
Q Consensus         1 ~~de~~s~l------D~-~~~~~~~~~~~~~~-~-~~tvi~vtH~~--~--------------------~~~~-~d~v~~   48 (79)
                      |+||||+.+      |. .....+...+..++ + +.++|+++|+.  .                    .+.. ||+|++
T Consensus       152 ilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~  231 (296)
T 1cr0_A          152 ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIA  231 (296)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEE
T ss_pred             EEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEE
Confidence            589999943      44 34455666665553 3 89999999996  4                    4555 999999


Q ss_pred             EeCceE
Q psy10474         49 LQAGQI   54 (79)
Q Consensus        49 l~~G~i   54 (79)
                      |.+|+.
T Consensus       232 L~~~~~  237 (296)
T 1cr0_A          232 LERNQQ  237 (296)
T ss_dssp             EEEC--
T ss_pred             EecCcc
Confidence            988764

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.35  E-value=1.7e-07  Score=62.14  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=42.7

Q ss_pred             CCcccccCCCHHHH-HHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474          1 MFRLFGSALDNESE-KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV   55 (79)
Q Consensus         1 ~~de~~s~lD~~~~-~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~   55 (79)
                      +||||++++|+... ..+..+++.+. . ++++|++||+++.+.. ++++.++ +|++.
T Consensus       873 LLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          873 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             EEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            58999999999864 55677777664 4 8899999999998865 7877776 47765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.30  E-value=2.6e-07  Score=51.25  Aligned_cols=53  Identities=21%  Similarity=0.211  Sum_probs=33.6

Q ss_pred             CCcccccCCCHH-------HH-----HHHHHHHHHh-cC-CCEEEEEccCcc----cccc-CCEEEEEeCce
Q psy10474          1 MFRLFGSALDNE-------SE-----KLVQAALESA-CK-GRTVLMIAHRLS----TVQN-ADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~-------~~-----~~~~~~~~~~-~~-~~tvi~vtH~~~----~~~~-~d~v~~l~~G~   53 (79)
                      +||||++.+|+.       .+     ..+...+... .+ +.|+|+++|...    .+.. +|+++.+++|+
T Consensus       130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            489999999983       11     1333333333 23 899999999554    4765 99999998753

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.28  E-value=3.7e-07  Score=60.05  Aligned_cols=41  Identities=15%  Similarity=0.197  Sum_probs=32.9

Q ss_pred             CCcccccCCCHHHHHHHH-HHHHHhc--CCCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLVQ-AALESAC--KGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~-~~~~~~~--~~~tvi~vtH~~~~~~   41 (79)
                      +||||++|+|+.....+. .+++.+.  .++++|++||+++...
T Consensus       757 LLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          757 ILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence            589999999999777665 6666552  4899999999987664

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.26  E-value=4e-07  Score=49.54  Aligned_cols=50  Identities=12%  Similarity=0.135  Sum_probs=36.3

Q ss_pred             CCcc--cccCCCHHHHHHHHHHHHHhcCCCEEEEEcc---Ccccccc-CCEEEEEeCceEee
Q psy10474          1 MFRL--FGSALDNESEKLVQAALESACKGRTVLMIAH---RLSTVQN-ADLIVVLQAGQIVE   56 (79)
Q Consensus         1 ~~de--~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH---~~~~~~~-~d~v~~l~~G~i~~   56 (79)
                      +|||  ||+++|+.....+.+.+..  .+.++|+++|   +...+.. +++    .+|++..
T Consensus       104 ilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          104 IIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             EECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             EEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            5899  9999999998888887765  4667888885   6566644 554    3355544

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.21  E-value=1.4e-07  Score=61.26  Aligned_cols=54  Identities=11%  Similarity=0.074  Sum_probs=37.8

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i   54 (79)
                      +||||++|+|+.....+ ..++..+.  .+.++|++||+.+....++++..+.+|++
T Consensus       691 LLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~  747 (800)
T 1wb9_A          691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL  747 (800)
T ss_dssp             EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEE
T ss_pred             EEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEE
Confidence            58999999998755443 55666553  38899999999976654665544444544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.98  E-value=2.4e-07  Score=56.60  Aligned_cols=57  Identities=21%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhcC-----CC-----EEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474          6 GSALDNESEKLVQAALESACK-----GR-----TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         6 ~s~lD~~~~~~~~~~~~~~~~-----~~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      |+++|+.....+.+++++...     |.     |+++++|+++ ...+|+++.+.+|+++..+++.+.
T Consensus       276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHc
Confidence            899999999999999987754     43     8999999998 444899999999999887766554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.85  E-value=1.3e-05  Score=44.13  Aligned_cols=52  Identities=13%  Similarity=0.018  Sum_probs=35.0

Q ss_pred             CCcccccCCCHHHH-----HH---HHHHHHHhc-C-CCEEEEEccCccc-------------ccc-CCEEEEEeCc
Q psy10474          1 MFRLFGSALDNESE-----KL---VQAALESAC-K-GRTVLMIAHRLST-------------VQN-ADLIVVLQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~-----~~---~~~~~~~~~-~-~~tvi~vtH~~~~-------------~~~-~d~v~~l~~G   52 (79)
                      |+|||++.+|+...     ..   +...+.... + +.++|+++|....             +.. +|.++.+++.
T Consensus       110 iiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          110 VVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             EEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             EEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            58999999987421     22   333344332 2 8899999998762             334 8999999754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.83  E-value=6.5e-07  Score=53.28  Aligned_cols=56  Identities=20%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             ccCCCHHHHHHHHHHHHHhc--C-CC-----EEEEEccCccccccCCEEEEEeCceEeeecChhH
Q psy10474          6 GSALDNESEKLVQAALESAC--K-GR-----TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKS   62 (79)
Q Consensus         6 ~s~lD~~~~~~~~~~~~~~~--~-~~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~   62 (79)
                      |+++|+.....+..++++..  + |.     |+++++|+++ ...||++..+.+|+++..++..+
T Consensus       189 t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~  252 (347)
T 2obl_A          189 RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE  252 (347)
T ss_dssp             BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence            79999999999999998875  3 66     8899999998 33489999999999988776554

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.72  E-value=6.5e-06  Score=53.42  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CCccc---ccCCCHHHH-HHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474          1 MFRLF---GSALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~---~s~lD~~~~-~~~~~~~~~~~~~~tvi~vtH~~~~~~   41 (79)
                      +||||   |+++|+... ..+.+.+..  .++++|++||+.+...
T Consensus       660 LLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          660 LLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTA  702 (765)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHT
T ss_pred             EEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHH
Confidence            58999   999998864 456665554  4889999999987653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.60  E-value=9.3e-05  Score=39.74  Aligned_cols=39  Identities=10%  Similarity=0.163  Sum_probs=32.3

Q ss_pred             CCccccc-CCCHHHHHHHHHHHHHhc-CCCEEEEEccCccc
Q psy10474          1 MFRLFGS-ALDNESEKLVQAALESAC-KGRTVLMIAHRLST   39 (79)
Q Consensus         1 ~~de~~s-~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~   39 (79)
                      +||||++ ++|+.....+..++.... .++++|++||....
T Consensus       105 ilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A          105 VLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ  145 (180)
T ss_dssp             EEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred             EEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence            5899996 899999888888887664 68899999998753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.51  E-value=9.8e-05  Score=41.11  Aligned_cols=52  Identities=12%  Similarity=0.117  Sum_probs=29.2

Q ss_pred             CCcccccCCCHH-------H-----HHHHHHHHHHh-cC-CCEEEEEccCccc-------------------cc-cCCEE
Q psy10474          1 MFRLFGSALDNE-------S-----EKLVQAALESA-CK-GRTVLMIAHRLST-------------------VQ-NADLI   46 (79)
Q Consensus         1 ~~de~~s~lD~~-------~-----~~~~~~~~~~~-~~-~~tvi~vtH~~~~-------------------~~-~~d~v   46 (79)
                      |+||+++.+|+.       .     ...+...+... .+ +.|+|+++|....                   +. .+|.+
T Consensus       124 iiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~v  203 (243)
T 1n0w_A          124 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR  203 (243)
T ss_dssp             EEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEE
T ss_pred             EEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEE
Confidence            589999999875       2     11222223222 23 8999999996543                   22 38999


Q ss_pred             EEEeCc
Q psy10474         47 VVLQAG   52 (79)
Q Consensus        47 ~~l~~G   52 (79)
                      +.++.|
T Consensus       204 i~l~~~  209 (243)
T 1n0w_A          204 LYLRKG  209 (243)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.46  E-value=0.00013  Score=42.86  Aligned_cols=39  Identities=15%  Similarity=0.340  Sum_probs=34.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~   40 (79)
                      +||||++ ||+.....+...++....+.++|+++|++..+
T Consensus       139 ilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          139 IINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  177 (354)
T ss_dssp             EEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             EEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence            5899999 99999999999998876788999999998654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.42  E-value=2.4e-05  Score=47.69  Aligned_cols=47  Identities=9%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc------C----CCEEEEEccCccc--ccc-CCEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC------K----GRTVLMIAHRLST--VQN-ADLIV   47 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~------~----~~tvi~vtH~~~~--~~~-~d~v~   47 (79)
                      +|||||++||+..+..+.+.+....      .    ..++++.+|.+..  +.. ++++.
T Consensus       189 lLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             ccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            4899999999998887777766542      1    3567778888876  544 66653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.40  E-value=5.3e-05  Score=43.47  Aligned_cols=40  Identities=10%  Similarity=0.239  Sum_probs=26.4

Q ss_pred             CCccccc--CCCHHHH---HHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474          1 MFRLFGS--ALDNESE---KLVQAALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s--~lD~~~~---~~~~~~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      |||||++  ++|....   ..+...+....  .++|+|+++|.....
T Consensus       138 vlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          138 VLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             EEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             EECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence            6899999  8887433   45555555543  389999999998654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.35  E-value=6.8e-05  Score=44.61  Aligned_cols=40  Identities=13%  Similarity=0.023  Sum_probs=24.9

Q ss_pred             CCcccccCCCHHH------------HHHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNES------------EKLVQAALESAC--KGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~------------~~~~~~~~~~~~--~~~tvi~vtH~~~~~   40 (79)
                      |+||||+++|+..            ...+...+....  .+.|+|+++|.....
T Consensus       236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~  289 (349)
T 1pzn_A          236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP  289 (349)
T ss_dssp             EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred             EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence            5899999999852            122333333332  388999999987644

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.31  E-value=5.9e-06  Score=48.84  Aligned_cols=46  Identities=13%  Similarity=0.146  Sum_probs=33.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCC-CEEEEEccCccccccCCEEEEEeCce
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKG-RTVLMIAHRLSTVQNADLIVVLQAGQ   53 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~-~tvi~vtH~~~~~~~~d~v~~l~~G~   53 (79)
                      +||||++.       .+.+.+..+..+ .|+++++|+.+....+|+++.+..|.
T Consensus       245 ildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          245 ILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             EECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             EEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence            58999982       234455555454 57999999999555599999998875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.24  E-value=9.3e-06  Score=47.68  Aligned_cols=44  Identities=14%  Similarity=0.048  Sum_probs=34.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474          6 GSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         6 ~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      ||+||+.++..+..             ++|++..+..+|++ +|++|+++..|++.++
T Consensus       221 Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          221 TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred             ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence            89999987776641             28998888779999 9999999999998887

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.97  E-value=6.6e-05  Score=43.06  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   49 (79)
                      +||||+   |+.....+   +.....+.++++++|+.+....+++++.|
T Consensus       103 llDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l  145 (261)
T 2eyu_A          103 FVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDI  145 (261)
T ss_dssp             EESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHT
T ss_pred             EeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhh
Confidence            589999   88765433   33334588999999998744335655433

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.97  E-value=0.00056  Score=43.47  Aligned_cols=58  Identities=9%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CCccc------ccCCCHHHHHHHHHHHHHhc-C--CCEEEEEccCccccc-------------cCCEEEEEeCceEeeec
Q psy10474          1 MFRLF------GSALDNESEKLVQAALESAC-K--GRTVLMIAHRLSTVQ-------------NADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de~------~s~lD~~~~~~~~~~~~~~~-~--~~tvi~vtH~~~~~~-------------~~d~v~~l~~G~i~~~~   58 (79)
                      ++|||      |+++|+.....+..++..+. .  +.++++++|+.+...             ....+.++..+-++..|
T Consensus       151 LlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g  230 (608)
T 3szr_A          151 LIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKG  230 (608)
T ss_dssp             EEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred             EeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcc
Confidence            47999      99999999999999888753 2  567778999876431             13456666665544433

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.75  E-value=0.00082  Score=35.36  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=25.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC-CCE-EEEEccCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK-GRT-VLMIAHRL   37 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~t-vi~vtH~~   37 (79)
                      +||||++ ++...+..+..++..... +++ +|+++|..
T Consensus        88 ilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~  125 (149)
T 2kjq_A           88 AVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT  125 (149)
T ss_dssp             EEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred             EEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence            5899998 555447777777776543 677 77777753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00061  Score=39.86  Aligned_cols=49  Identities=16%  Similarity=0.156  Sum_probs=32.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCc---------ccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRL---------STVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~---------~~~~~-~d~v~~l~~G~i   54 (79)
                      ||| ||+++|+....  ..+..  ..+.|+|++||.-         +.+.. ..++.++..|+.
T Consensus       226 vLD-ptsglD~~~~~--~~~~~--~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          226 VLD-GNTGLNMLPQA--REFNE--VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             EEE-GGGGGGGHHHH--HHHHH--HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             EEe-CCCCcCHHHHH--HHHHH--hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            589 99999988543  11111  2378999999932         23333 567888888864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.61  E-value=0.00024  Score=38.95  Aligned_cols=54  Identities=7%  Similarity=0.052  Sum_probs=34.1

Q ss_pred             CCcc--cccCCCHHHHHHHHHHHHHhcCCCEEEE----EccCccccccCCEEEEEeCceEeeec
Q psy10474          1 MFRL--FGSALDNESEKLVQAALESACKGRTVLM----IAHRLSTVQNADLIVVLQAGQIVEMG   58 (79)
Q Consensus         1 ~~de--~~s~lD~~~~~~~~~~~~~~~~~~tvi~----vtH~~~~~~~~d~v~~l~~G~i~~~~   58 (79)
                      ||||  |+..+|......+.+++..   ..++|+    ++|+.+ ....+++..+.+|++....
T Consensus       110 ilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          110 VIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             EECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred             EEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence            5899  7877888766666666653   334443    338764 2235666667778877644

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.57  E-value=0.00018  Score=42.98  Aligned_cols=45  Identities=24%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      ++|||+   |......+...   ...|.++++++|..+.+..++|++.|..
T Consensus       201 llDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~  245 (356)
T 3jvv_A          201 LVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP  245 (356)
T ss_dssp             EESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred             ecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence            589999   65553333322   3458899999999988755888876643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.56  E-value=0.0017  Score=39.43  Aligned_cols=53  Identities=9%  Similarity=0.131  Sum_probs=32.7

Q ss_pred             CCcccccCCCHHHH------------HHHHHHHHHhc-C-CCEEEEEccCcc-------------------cccc-CCEE
Q psy10474          1 MFRLFGSALDNESE------------KLVQAALESAC-K-GRTVLMIAHRLS-------------------TVQN-ADLI   46 (79)
Q Consensus         1 ~~de~~s~lD~~~~------------~~~~~~~~~~~-~-~~tvi~vtH~~~-------------------~~~~-~d~v   46 (79)
                      |+|++++.+++...            ..+...+..+. + +.|+|+++|...                   .+.. +|.+
T Consensus       278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~v  357 (400)
T 3lda_A          278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTR  357 (400)
T ss_dssp             EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEE
T ss_pred             EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceE
Confidence            57999999986432            33344444443 2 899999999821                   1234 7888


Q ss_pred             EEEeCce
Q psy10474         47 VVLQAGQ   53 (79)
Q Consensus        47 ~~l~~G~   53 (79)
                      +.+++++
T Consensus       358 l~L~~~~  364 (400)
T 3lda_A          358 LGFKKGK  364 (400)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            8887653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.24  E-value=0.0019  Score=38.75  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccC---------cccccc-CCEEEEEeCceE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHR---------LSTVQN-ADLIVVLQAGQI   54 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~---------~~~~~~-~d~v~~l~~G~i   54 (79)
                      ||| ||+++|+.....  .+..  ..+.|+|++||.         ++.... ...+.++..|+.
T Consensus       283 vLD-pttglD~~~~~~--~~~~--~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          283 VLD-GNTGLNMLPQAR--EFNE--VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             EEE-GGGGGGGHHHHH--HHHH--HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             EEc-CCCCCCHHHHHH--HHHH--hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            589 999999885531  1111  237899999993         223333 677888888764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.95  E-value=0.00035  Score=37.69  Aligned_cols=54  Identities=11%  Similarity=0.107  Sum_probs=34.4

Q ss_pred             cCCCHHHHHHHHHHHHHhc-CCCEEEEEccC-cccccc-CCEEEEEeCceEeeecChhHH
Q psy10474          7 SALDNESEKLVQAALESAC-KGRTVLMIAHR-LSTVQN-ADLIVVLQAGQIVEMGNHKSL   63 (79)
Q Consensus         7 s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~-~~~~~~-~d~v~~l~~G~i~~~~~~~~~   63 (79)
                      .++|+..... .+.+.... .+.++|.++|. ++.+.. |++++  ++|+++..|++..+
T Consensus       126 ~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          126 EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             ---CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred             ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence            3678765555 55555553 36788999998 888866 89988  89999988877654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.70  E-value=0.0098  Score=32.97  Aligned_cols=51  Identities=12%  Similarity=0.145  Sum_probs=32.3

Q ss_pred             CCcccccCC--CHHH-HHHHHHHHHHhc-CCCEEEEEccCccc--------ccc-CCEEEEEeC
Q psy10474          1 MFRLFGSAL--DNES-EKLVQAALESAC-KGRTVLMIAHRLST--------VQN-ADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~l--D~~~-~~~~~~~~~~~~-~~~tvi~vtH~~~~--------~~~-~d~v~~l~~   51 (79)
                      ++|+++..+  |+.. ...+..+..... .+.++|+++|....        +.. +|.++.++.
T Consensus       133 viD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          133 VVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             EEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             EECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            478998877  4432 334444444332 48899999998765        234 899998864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.26  E-value=0.00049  Score=38.25  Aligned_cols=43  Identities=14%  Similarity=0.084  Sum_probs=27.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      +||||++++|..+...+.+.+.....+.+   ++|    +..+|.+++.+
T Consensus       150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~  192 (218)
T 1z6g_A          150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIIND  192 (218)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECS
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECC
Confidence            47999999999877777776655433333   344    23356665554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.20  E-value=0.061  Score=30.93  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=24.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~   40 (79)
                      +||||++++|+.....+..+    ....++|++.|..+.+
T Consensus       118 lldep~~gL~~lD~~~l~~L----~~~~~vI~Vi~K~D~l  153 (270)
T 3sop_A          118 FISPTGHSLRPLDLEFMKHL----SKVVNIIPVIAKADTM  153 (270)
T ss_dssp             EECCCSSSCCHHHHHHHHHH----HTTSEEEEEETTGGGS
T ss_pred             EEecCCCcCCHHHHHHHHHH----HhcCcEEEEEeccccC
Confidence            48999999998874433332    2237888888776655

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.06  E-value=0.08  Score=31.59  Aligned_cols=29  Identities=14%  Similarity=0.185  Sum_probs=20.1

Q ss_pred             CCEEEEEccCccc----------------ccc-CCEEEEEeCceEe
Q psy10474         27 GRTVLMIAHRLST----------------VQN-ADLIVVLQAGQIV   55 (79)
Q Consensus        27 ~~tvi~vtH~~~~----------------~~~-~d~v~~l~~G~i~   55 (79)
                      +.++|+++|....                +.. ++.++.+++++..
T Consensus       188 ~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~  233 (349)
T 2zr9_A          188 GTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL  233 (349)
T ss_dssp             TCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred             CCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence            8899999996541                334 7888888776544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.81  E-value=0.17  Score=31.66  Aligned_cols=46  Identities=15%  Similarity=0.067  Sum_probs=36.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   50 (79)
                      ||||+ +-+|......+.+++..+  |..+|+++-. ...+..+.++.+-
T Consensus       419 vlDEA-~kmD~~~~~~~~~l~~~l--glQliiatP~-~i~p~v~~~~~~~  464 (483)
T 3euj_A          419 FLDQA-ARLDAMSINTLFELCERL--DMQLLIAAPE-NISPERGTTYKLV  464 (483)
T ss_dssp             EESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEESS-SCCCSSSEEEECC
T ss_pred             EEecc-ccCCHHHHHHHHHHHHHc--CCEEEEECcc-hhhhccCceEEEE
Confidence            58999 999999999998888865  7788888866 3334478877664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.66  E-value=0.023  Score=31.70  Aligned_cols=31  Identities=6%  Similarity=0.302  Sum_probs=25.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc
Q psy10474          9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN   42 (79)
Q Consensus         9 lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~   42 (79)
                      ||+.....+.+.+.   .+.++++++|+++.+..
T Consensus       115 LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          115 IDWQGAQQIRQKMP---HARSIFILPPSKIELDR  145 (219)
T ss_dssp             CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred             ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence            89998888887664   57899999999988744

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.40  E-value=0.1  Score=31.29  Aligned_cols=41  Identities=7%  Similarity=0.099  Sum_probs=33.4

Q ss_pred             CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474          1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~   41 (79)
                      ++||++.-++   +.....+...+++.++ +..++++||.+..+.
T Consensus       267 ~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~  311 (392)
T 4ag6_A          267 VVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL  311 (392)
T ss_dssp             EETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred             EEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence            5899999995   5566778888887776 899999999997663

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.18  E-value=0.0023  Score=35.00  Aligned_cols=37  Identities=11%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CCcccccC-------CCHHHHHHHHHHHHHh--cCCCEEEEEccCc
Q psy10474          1 MFRLFGSA-------LDNESEKLVQAALESA--CKGRTVLMIAHRL   37 (79)
Q Consensus         1 ~~de~~s~-------lD~~~~~~~~~~~~~~--~~~~tvi~vtH~~   37 (79)
                      ++|||+++       ||+.....+...+.+.  ..+.|++.++|+.
T Consensus       116 ~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          116 LYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             TSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             ccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            46999999       8998887777776653  2478888888874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=92.42  E-value=0.097  Score=30.48  Aligned_cols=34  Identities=9%  Similarity=-0.085  Sum_probs=22.9

Q ss_pred             CCcccccC-CCHHHHHHHHHHHHHhcC--CCEEEEEccCcc
Q psy10474          1 MFRLFGSA-LDNESEKLVQAALESACK--GRTVLMIAHRLS   38 (79)
Q Consensus         1 ~~de~~s~-lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~   38 (79)
                      +|||||++ ||+...    +.+.....  +.++|+..||+.
T Consensus       132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            37999985 999864    33333332  667788889874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.39  E-value=0.065  Score=29.99  Aligned_cols=24  Identities=13%  Similarity=-0.025  Sum_probs=19.5

Q ss_pred             CCc----ccccCCCHHHHHHHHHHHHHh
Q psy10474          1 MFR----LFGSALDNESEKLVQAALESA   24 (79)
Q Consensus         1 ~~d----e~~s~lD~~~~~~~~~~~~~~   24 (79)
                      +||    |||+++|+.....+.+.+...
T Consensus       169 llD~~~~EP~~~ld~~~~~~i~~~l~~~  196 (246)
T 2bbw_A          169 GIDDVTGEPLVQQEDDKPEAVAARLRQY  196 (246)
T ss_dssp             TBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCcHHHHHHHHHHH
Confidence            479    999999998887777776654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.84  E-value=0.014  Score=35.01  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS   38 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~   38 (79)
                      ++|||+   |+...   ...+.....|.+++.++|..+
T Consensus       214 lldE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~  245 (372)
T 2ewv_A          214 FVGEMR---DLETV---ETALRAAETGHLVFGTLHTNT  245 (372)
T ss_dssp             EESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCS
T ss_pred             EECCCC---CHHHH---HHHHHHHhcCCEEEEEECcch
Confidence            479999   65543   233343445788888889765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.35  E-value=0.044  Score=29.59  Aligned_cols=24  Identities=13%  Similarity=-0.013  Sum_probs=19.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhc
Q psy10474          2 FRLFGSALDNESEKLVQAALESAC   25 (79)
Q Consensus         2 ~de~~s~lD~~~~~~~~~~~~~~~   25 (79)
                      +|||+|++|+.....+.+.+....
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHH
Confidence            689999999998887777776553

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=91.17  E-value=0.00038  Score=42.21  Aligned_cols=58  Identities=14%  Similarity=0.025  Sum_probs=42.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHh-cC-CCEEEEEccCcccccc-CCEEE-EEeCc-eEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIV-VLQAG-QIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~-~~-~~tvi~vtH~~~~~~~-~d~v~-~l~~G-~i~~~~~~   60 (79)
                      ++||++..+|+.........+... .. +.|+  ++|.+..... |+++. .|.+| +++..+..
T Consensus       146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            368888888888777777777665 44 5554  3898887755 89988 88899 77655543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=90.86  E-value=0.27  Score=30.20  Aligned_cols=53  Identities=9%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             CCcccccCCCH--------HHHHHHHHHHHHhc-C-CCEEEEEcc---------C--cc--------cccc-CCEEEEEe
Q psy10474          1 MFRLFGSALDN--------ESEKLVQAALESAC-K-GRTVLMIAH---------R--LS--------TVQN-ADLIVVLQ   50 (79)
Q Consensus         1 ~~de~~s~lD~--------~~~~~~~~~~~~~~-~-~~tvi~vtH---------~--~~--------~~~~-~d~v~~l~   50 (79)
                      |+|+++....+        .....+...+..++ + +.++|+++|         +  +.        .+.. +|.|+++.
T Consensus       318 vID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~  397 (454)
T 2r6a_A          318 VIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY  397 (454)
T ss_dssp             EEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred             EEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence            46887776632        11233334444443 2 889999999         2  22        3445 89999997


Q ss_pred             Cce
Q psy10474         51 AGQ   53 (79)
Q Consensus        51 ~G~   53 (79)
                      ++.
T Consensus       398 r~~  400 (454)
T 2r6a_A          398 RDD  400 (454)
T ss_dssp             ETT
T ss_pred             ccc
Confidence            654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=90.72  E-value=0.0047  Score=33.74  Aligned_cols=45  Identities=13%  Similarity=0.136  Sum_probs=29.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||+++++|..+...+...+.....+   +.+.|  .. ..+|.+++.++
T Consensus       129 ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          129 VLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence            479999999988877777766554332   13345  11 45888877753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.50  E-value=0.36  Score=29.60  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=23.7

Q ss_pred             CCcccc-cCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474          1 MFRLFG-SALDNESEKLVQAALESACKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~-s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~   40 (79)
                      +||||| +++|+.....+    ..+..+.++|+|.|..+.+
T Consensus       144 ~ldePt~~~L~~~d~~~l----k~L~~~v~iIlVinK~Dll  180 (418)
T 2qag_C          144 YFIAPSGHGLKPLDIEFM----KRLHEKVNIIPLIAKADTL  180 (418)
T ss_dssp             EECCC-CCSCCHHHHHHH----HHHTTTSEEEEEEESTTSS
T ss_pred             EEecCcccCCCHHHHHHH----HHHhccCcEEEEEEcccCc
Confidence            479999 69998764333    3333577888888877654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=88.24  E-value=0.056  Score=32.15  Aligned_cols=43  Identities=14%  Similarity=0.099  Sum_probs=24.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEE
Q psy10474          6 GSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVL   49 (79)
Q Consensus         6 ~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l   49 (79)
                      +.++|+.++..+...+.+...  +.++++++|. ....+ ++++..+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i  341 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI  341 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence            358899988888888765533  7888888864 33333 4444444

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=84.75  E-value=0.31  Score=30.76  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=24.8

Q ss_pred             CCcccccCCCHHH---HHHHHHHHHHhcC-CCEEEEEccCcc
Q psy10474          1 MFRLFGSALDNES---EKLVQAALESACK-GRTVLMIAHRLS   38 (79)
Q Consensus         1 ~~de~~s~lD~~~---~~~~~~~~~~~~~-~~tvi~vtH~~~   38 (79)
                      |+||++..++...   ...+..+.+..+. |.++|++||++.
T Consensus       302 vIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          302 LVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             EEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             EEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            5799998887432   2223333333333 889999999987

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=83.03  E-value=1.7  Score=25.22  Aligned_cols=31  Identities=10%  Similarity=-0.015  Sum_probs=20.8

Q ss_pred             CCccc-ccCCCHHHHHHHHHHHHHhcCCCEEE
Q psy10474          1 MFRLF-GSALDNESEKLVQAALESACKGRTVL   31 (79)
Q Consensus         1 ~~de~-~s~lD~~~~~~~~~~~~~~~~~~tvi   31 (79)
                      |+|+| ++++|......+...........+++
T Consensus       185 iiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l  216 (295)
T 1ls1_A          185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLL  216 (295)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred             EEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence            57988 99999876666666665554444443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=82.26  E-value=1.5  Score=26.92  Aligned_cols=60  Identities=10%  Similarity=0.216  Sum_probs=35.3

Q ss_pred             CCcccccCCCH-HHHHHHHHHHHHhc-CCCEEEEEccCcc-cccc-CCEEEE-EeCceEeeecCh
Q psy10474          1 MFRLFGSALDN-ESEKLVQAALESAC-KGRTVLMIAHRLS-TVQN-ADLIVV-LQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~-~~~~~~~~~~~~~~-~~~tvi~vtH~~~-~~~~-~d~v~~-l~~G~i~~~~~~   60 (79)
                      ++||+....+. ..+..+...+.... .++.+|+++|... .+.. .+++.. +..|.++...++
T Consensus       199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p  263 (440)
T 2z4s_A          199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP  263 (440)
T ss_dssp             EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred             EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence            57999888764 45566666666544 4788888888753 3222 233322 445655544443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=81.13  E-value=1.9  Score=23.17  Aligned_cols=39  Identities=13%  Similarity=0.090  Sum_probs=25.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~   40 (79)
                      ++||+.. +++.....+...+.....+..+|++++....+
T Consensus       131 viDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~  169 (250)
T 1njg_A          131 LIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  169 (250)
T ss_dssp             EEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             EEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence            4788776 67666666666665544466777788766543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=80.59  E-value=2.6  Score=24.65  Aligned_cols=25  Identities=12%  Similarity=0.089  Sum_probs=18.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEccCccc
Q psy10474         15 KLVQAALESACKGRTVLMIAHRLST   39 (79)
Q Consensus        15 ~~~~~~~~~~~~~~tvi~vtH~~~~   39 (79)
                      ..+.+.+.....+.++++++|+.-.
T Consensus       167 ~~l~~~l~~l~~~~~ii~~sh~~~~  191 (318)
T 1nij_A          167 EKLHERLARINARAPVYTVTHGDID  191 (318)
T ss_dssp             HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred             HHHHHHHHHhCCCCeEEEecccCCC
Confidence            5566666666668899999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-26
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	8e-25
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-24
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-22
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-22
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	5e-19
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	9e-09
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	5e-08
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	1e-06
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-05
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	7e-05
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-05
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-04
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-04
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-04
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-04
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-04
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-04
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	5e-04
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-04
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	0.001

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 94.9 bits (236), Expect = 1e-26
 Identities = 40/71 (56%), Positives = 49/71 (69%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE+ +QAAL+   K RT L+IAHRLST++ AD IVV++ G IVE G H  LLA+
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240

Query: 67  KGHYWTLMNQQ 77
            G Y  L   Q
Sbjct: 241 HGVYAQLHKMQ 251

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 90.6 bits (225), Expect = 8e-25
 Identities = 39/72 (54%), Positives = 52/72 (72%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++Q AL+   K RT L++AHRLST+ +AD IVV++ G IVE G H+ L+AK
Sbjct: 183 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242

Query: 67  KGHYWTLMNQQN 78
           +G Y  L + QN
Sbjct: 243 QGAYEHLYSIQN 254

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 89.6 bits (222), Expect = 2e-24
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           SALD ESE ++   +   CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227

Query: 67  KGH-YWTLMNQQN 78
               Y  L   Q+
Sbjct: 228 PESLYSYLYQLQS 240

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 84.9 bits (210), Expect = 1e-22
 Identities = 34/71 (47%), Positives = 48/71 (67%)

Query: 7   SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
           ++LD+ESE +VQ AL+S  KGRT L+IAHRLST+ +AD I  ++ GQI   G H  L+A 
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227

Query: 67  KGHYWTLMNQQ 77
              Y   +++Q
Sbjct: 228 HPLYAKYVSEQ 238

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 1e-22
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
           SALD  S+  V+  L  + +   R+VL+I   LS V+ AD I+ L+ G I E G H+ L+
Sbjct: 180 SALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 239

Query: 65  AKKGHYWTLMN 75
            KKG YW ++ 
Sbjct: 240 EKKGCYWAMVQ 250

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (186), Expect = 5e-19
 Identities = 11/73 (15%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 7   SALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
             LD  + E++ ++ +      +T +++  ++  ++ AD I++L  G     G    L +
Sbjct: 187 GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246

Query: 66  KKGHYWTLMNQQN 78
            +  + + +   +
Sbjct: 247 LRPDFSSKLMGYD 259

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 47.6 bits (113), Expect = 9e-09
 Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 7   SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLL 64
           ++LD   +  +   L +   +G  ++M +H L+   ++A    +L+ G+++  G  + +L
Sbjct: 161 NSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220

Query: 65  AK 66
             
Sbjct: 221 TP 222

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.6 bits (108), Expect = 5e-08
 Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHK 61
            ALD+++ + +   L+   +  G+TV+++ H ++  +  + I+ L+ G++      +
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.4 bits (97), Expect = 1e-06
 Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 7   SALD-NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
           SALD     ++++   + A +G+T++++ H +   ++ +  ++ L  G+I E G+ + + 
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237

Query: 65  AKKGHYWT 72
                   
Sbjct: 238 GNPQSPRL 245

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 7   SALD-NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
           + +    +  +    LE   KG T L+I HRL  V N  D + V+  GQI+  G  +  +
Sbjct: 179 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238

Query: 65  AK 66
             
Sbjct: 239 KN 240

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.9 bits (85), Expect = 7e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 25  CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
                +L + H L      AD + V+  G+IVE G  K L + K   
Sbjct: 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (85), Expect = 7e-05
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 27  GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
           G T+L+I H +  V+   D + V+  G+++E      + +       
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 36.1 bits (82), Expect = 1e-04
 Identities = 4/36 (11%), Positives = 8/36 (22%)

Query: 25  CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNH 60
                V+              I  L    ++E+   
Sbjct: 128 DPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 25  CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
             G T + + H         D I V+  G + ++G+   +  K  + + 
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 34.9 bits (80), Expect = 3e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 7   SALD-NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
             L      ++ +   +   +G T+L++          A    VL+ GQIV  G    LL
Sbjct: 168 LGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227

Query: 65  A 65
            
Sbjct: 228 D 228

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 25  CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
             G T+L+++H  + +   AD + VL  G++V++G  + L         
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.4 bits (79), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 7   SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
           S LD +    ++A ++   +    T + + H         D I V+  GQ++++G+   +
Sbjct: 165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224

Query: 64  LAKKGHYWT 72
             +    + 
Sbjct: 225 YLRPNSVFV 233

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 33.9 bits (77), Expect = 8e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 25  CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
               TVL I H  +  +  AD I V+  G+++++G  + +  K      
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 25  CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
             GRT++ + H        AD IVVL AG++ ++G    L       + 
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.88
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.88
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.86
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.84
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.84
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.83
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.83
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.82
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.82
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.81
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.79
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.78
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.3
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.98
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.85
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.62
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.41
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.63
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.7
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	84.01

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=2.2e-23  Score=117.79  Aligned_cols=76  Identities=51%  Similarity=0.670  Sum_probs=70.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      |||||||+||+.++..+.+.+..+.+++|+|+|||+++.+..||+|++|++|++++.|++.++.+..+.+..++..
T Consensus       175 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~~  250 (253)
T d3b60a1         175 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM  250 (253)
T ss_dssp             EEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred             EeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence            6899999999999999999999888899999999999988779999999999999999999998877778887754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=9e-23  Score=115.33  Aligned_cols=77  Identities=49%  Similarity=0.702  Sum_probs=70.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ   77 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~   77 (79)
                      |||||||+||+.++..+.+.+....+++|+|+|||+++.+..||+|++|++|++++.|++.++.+....+..++...
T Consensus       177 ilDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~~Q  253 (255)
T d2hyda1         177 ILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ  253 (255)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTT
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHc
Confidence            68999999999999999999998888999999999999888899999999999999999999998888888877543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.1e-22  Score=114.25  Aligned_cols=76  Identities=50%  Similarity=0.741  Sum_probs=67.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccc-hHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG-HYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~-~~~~~~~~   76 (79)
                      |||||||+||+.++..+.+.+....+++|+|+|||+++.+..||+|++|++|++++.|++.++..++. .+..+++.
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~  238 (241)
T d2pmka1         162 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL  238 (241)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred             hhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence            68999999999999999999998888999999999999887799999999999999999999987655 45566543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=114.52  Aligned_cols=75  Identities=39%  Similarity=0.605  Sum_probs=67.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN   75 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~   75 (79)
                      |||||||+||+.++..+.+.+....+  ++|+|+|||+++.+..||+|++|++|++++.|++.++.+..+.++.+++
T Consensus       174 ilDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~~  250 (251)
T d1jj7a_         174 ILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ  250 (251)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHC
T ss_pred             EecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHhc
Confidence            68999999999999999999987643  8999999999998877999999999999999999999887777777664

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.86  E-value=6.6e-23  Score=115.21  Aligned_cols=76  Identities=45%  Similarity=0.625  Sum_probs=69.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ   76 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~   76 (79)
                      +||||||+||+.++..+.+.+....+++|+|+|||+++.+..||+|++|++|++++.|++.++......+..+++.
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~  237 (242)
T d1mv5a_         162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE  237 (242)
T ss_dssp             EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred             EecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHH
Confidence            5899999999999999999998888899999999999988779999999999999999999998877777777653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.3e-21  Score=109.50  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=64.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||++|||..+..+.+++.... + +.|+|++||+++++.. ||++++|++|++++.|++.++..++.+.+
T Consensus       159 llDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~  232 (239)
T d1v43a3         159 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF  232 (239)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence            5899999999999999999998874 3 9999999999999976 99999999999999999999987766543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.7e-21  Score=110.26  Aligned_cols=70  Identities=21%  Similarity=0.374  Sum_probs=63.2

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +|||||++||+..+..+.+++.++. ++.|+|+|||+++.+.. |||+++|++|++++.|++.++..++.+.
T Consensus       172 ilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~~~  243 (258)
T d1b0ua_         172 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSP  243 (258)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSH
T ss_pred             EeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCH
Confidence            5899999999999999999988775 48999999999999976 9999999999999999999998776553

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.84  E-value=2.5e-21  Score=108.52  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||++||+..+..+.+++..+. + +.|+|++||+++++.. ||++++|++|++++.|++.++..++.+.+
T Consensus       162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~  235 (240)
T d1g2912         162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF  235 (240)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred             EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence            5899999999999999999998764 3 9999999999999976 99999999999999999999987766544

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.6e-21  Score=107.95  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=63.5

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||++||+..+..++..+....  .+.|+|++||+++++.. ||++++|++|++++.|++.++..++.+.+
T Consensus       153 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~  226 (232)
T d2awna2         153 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF  226 (232)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHH
Confidence            5899999999999999998887763  49999999999999976 99999999999999999999987766544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.83  E-value=3.4e-21  Score=107.32  Aligned_cols=70  Identities=24%  Similarity=0.300  Sum_probs=63.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY   70 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~   70 (79)
                      +|||||++||+..+..+.+.+....  .+.|+|++||+++.+.. ||++++|++|++++.|++.++..++.+.
T Consensus       150 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~  222 (229)
T d3d31a2         150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG  222 (229)
T ss_dssp             EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred             eecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCH
Confidence            5899999999999999999998863  38899999999999976 9999999999999999999998776554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.4e-21  Score=107.49  Aligned_cols=69  Identities=22%  Similarity=0.409  Sum_probs=62.3

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH   69 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~   69 (79)
                      +|||||++||+..+..+++.+.++. + +.|+|++||++..+.. ||++++|++|++++.|++.++..++.+
T Consensus       163 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~  234 (240)
T d3dhwc1         163 LCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT  234 (240)
T ss_dssp             EEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCC
T ss_pred             EeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence            5899999999999999999998864 4 8999999999999976 999999999999999999998766544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=6.8e-21  Score=106.77  Aligned_cols=71  Identities=23%  Similarity=0.299  Sum_probs=63.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +|||||++||+..+..+.+.+.++. + +.|+|++||+++.+.. ||++++|++|++++.|++.++..++.+.+
T Consensus       163 llDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~  236 (242)
T d1oxxk2         163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ  236 (242)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred             eecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence            5899999999999999999998874 3 9999999999999866 99999999999999999999987766544

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.81  E-value=7.8e-21  Score=106.61  Aligned_cols=68  Identities=24%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG   68 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~   68 (79)
                      +|||||++||+..+..+.+.+.++. +|.|+|++||+++.+.. ||++++|++|+++..|++.++..++.
T Consensus       162 llDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~  231 (240)
T d1ji0a_         162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM  231 (240)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHH
T ss_pred             eecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHH
Confidence            5899999999999999999998874 48999999999999866 99999999999999999999876543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=2.2e-20  Score=105.51  Aligned_cols=65  Identities=25%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+.+.... +|.|+|+++|+++++.. ||++++|++|+++..|++.+...
T Consensus       173 ilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         173 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence            5899999999999999999888764 58999999999999966 99999999999999999887543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=2.6e-20  Score=104.36  Aligned_cols=65  Identities=29%  Similarity=0.403  Sum_probs=59.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA   65 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~   65 (79)
                      +|||||++||+..+..+.+++.+.. +|.|+|++||+++++.. ||++++|++|+++..|++.++..
T Consensus       156 lLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         156 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            5899999999999999999998775 58999999999999976 99999999999999999998854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=3.1e-20  Score=103.92  Aligned_cols=67  Identities=27%  Similarity=0.345  Sum_probs=60.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK   67 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~   67 (79)
                      +|||||++||+..+..+.+.+.... + +.|+|++||+++.+.. ||++++|++|++++.|++.++.+.+
T Consensus       149 llDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             EecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence            5899999999999999999998764 3 8999999999999976 9999999999999999999987543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.79  E-value=4.3e-20  Score=102.95  Aligned_cols=60  Identities=18%  Similarity=0.333  Sum_probs=54.1

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEeeecCh
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNH   60 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~   60 (79)
                      +||||||+||+.++..+.+.+..+. + +.|+|++||+++.+..||++++|++|++++.|+.
T Consensus       168 llDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             EecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            5899999999999999999998873 4 8999999999998766999999999999988764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.1e-20  Score=104.38  Aligned_cols=66  Identities=20%  Similarity=0.383  Sum_probs=60.0

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK   66 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~   66 (79)
                      +|||||++||+..+..+.+++..+. .|.|+|+++|+++.+.. ||++++|++|++++.|++.++..+
T Consensus       155 llDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         155 LLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             EESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence            5899999999999999999998874 59999999999999866 999999999999999999988653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.1e-19  Score=103.84  Aligned_cols=71  Identities=17%  Similarity=0.237  Sum_probs=59.2

Q ss_pred             CCcccccCCCHHHHHHHHHH-HHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474          1 MFRLFGSALDNESEKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW   71 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~-~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~   71 (79)
                      +||||||+||+.+...+.+. +.....++|+|+|||+++.+..||+|++|++|++++.|++.++......+.
T Consensus       181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~  252 (281)
T d1r0wa_         181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFS  252 (281)
T ss_dssp             EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHH
T ss_pred             hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHH
Confidence            68999999999988777654 444456899999999998887799999999999999999999876444443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.98  E-value=3.8e-11  Score=65.29  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=33.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQA   51 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~   51 (79)
                      +|||||++||+..+..+.+.+.+..+  +.++|..+|+   +..||.+.+|..
T Consensus       148 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~  197 (200)
T d1sgwa_         148 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK  197 (200)
T ss_dssp             EEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred             EEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence            58999999999999888877766543  3333334443   335898888754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=2.5e-08  Score=58.08  Aligned_cols=49  Identities=14%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL   49 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l   49 (79)
                      +||||+++||+.....+.+.+.... .+..+|++||++..+..+|+.+..
T Consensus       359 ilDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         359 VLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             EESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            5899999999999999999887764 366799999999988888997754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=3.8e-07  Score=51.30  Aligned_cols=52  Identities=21%  Similarity=0.313  Sum_probs=44.9

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEE--EeCc
Q psy10474          1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV--LQAG   52 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~--l~~G   52 (79)
                      ++|||.++|+|.....+...+.....+..+|++||.+..+..+|+++.  +.+|
T Consensus       246 ~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g  299 (308)
T d1e69a_         246 VLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG  299 (308)
T ss_dssp             EEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred             hhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence            479999999999999999999888778899999999998888898865  4455

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.63  E-value=0.00015  Score=37.34  Aligned_cols=58  Identities=12%  Similarity=0.014  Sum_probs=37.7

Q ss_pred             CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474          1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN   59 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~   59 (79)
                      ++|||+...+. .......+...+. .+.++|+++|+......++++..+.+|+++.-+.
T Consensus       104 llDE~~~~~~~-~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         104 IIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             EECCCSTTGGG-CHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred             eecCCCccchh-hHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence            47998655432 2222222333333 3789999999876655688988899999876554

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.70  E-value=0.041  Score=29.62  Aligned_cols=41  Identities=12%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhcC-CCEEEEEccCccccc
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESACK-GRTVLMIAHRLSTVQ   41 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~~-~~tvi~vtH~~~~~~   41 (79)
                      ++||+..+=++.....+ ...++.+.+ +...+++||..+...
T Consensus       119 liDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         119 LLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             eecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            58999999999865433 444554443 778899999876543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.01  E-value=0.32  Score=26.14  Aligned_cols=40  Identities=15%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             CCcccccCCCHHHHHHH-HHHHHHhc-C-CCEEEEEccCcccc
Q psy10474          1 MFRLFGSALDNESEKLV-QAALESAC-K-GRTVLMIAHRLSTV   40 (79)
Q Consensus         1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~-~~tvi~vtH~~~~~   40 (79)
                      ++||+.++=++.....+ ...++.+. . ...++++||.....
T Consensus       125 liDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         125 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             eecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            58999999998866544 44455442 3 45677888876544