Psyllid ID: psy10479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MMGDQYRKMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKKNRIE
Secondary Structure (PSIPRED)
cccHHHcccccccccccccccccccccccccccccEEEEEcccccccccccccEEccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEcccccccccEEEEccccccccccccEEEccccccccccccccHHHHHcccHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHHccccccccccccccHHHHcccEcccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccccccccccHHcHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mmgdqyrkmeqyspktsprgsrspivsrqdttgtlkttislgknpsivhsgpfylmkeppgksektgsVNLMASYGLEHTYNKFCGKKLKESLSsflpnlpgiidapgsqdnsslrsviekppicgkeilpltsvqlagfrlhpgnlpeqYRIANQVAskrhknkhkkhkyktgdtsnpdanmgdvsysdshekkhkkqkrhndDKERKKRKKEKKKKNRIE
Flexible Loop (DISEMBL)
mmgdqyrkmeqyspktsprgsrspivsrqdttgtlkttislgknpsivhsGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQvaskrhknkhkkhkyktgdtsnpdanMGDVsysdshekkhkkqkrhnddkerkkrkkekkkknrie
Low Complexity Region (SEG)
MMGDQYRKMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASkrhknkhkkhkykTGDTSNPDANMGDVSYSDSHEKKHKKQkrhnddkerkkrkkekkkknrIE
Disordered region (IsUnstruct)
****************************************************FY***************NLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGII**************IEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYR**********************************************************************
Disordered Region (DISOPRED)
*********************************************SIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPG*********VIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYR**********************************************************************
Disordered Region (DISEMBL)
**************************SRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQV****************GDTSNPDANMGD*************************************
Disordered Region (DISPRO)
***************************RQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQV*************************************************ERKKRKKEKKK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMGDQYRKMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPDANMGDVSYSDSHEKKxxxxxxxxxxxxxxxxxxxxxxxxRIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q174D3	253	Mediator of RNA polymeras	N/A	N/A	0.909	0.798	0.718	1e-73
Q9VVL6	337	Mediator of RNA polymeras	yes	N/A	0.900	0.593	0.607	3e-51
Q07FY3	249	Mediator of RNA polymeras	yes	N/A	0.662	0.590	0.522	6e-38
Q5EAY2	240	Mediator of RNA polymeras	N/A	N/A	0.734	0.679	0.514	4e-37
Q8C1S0	244	Mediator of RNA polymeras	yes	N/A	0.527	0.479	0.623	3e-36
Q6DRL8	240	Mediator of RNA polymeras	yes	N/A	0.459	0.425	0.656	1e-34
A0JLT2	244	Mediator of RNA polymeras	yes	N/A	0.468	0.426	0.663	1e-34
Q08C81	242	Mediator of RNA polymeras	yes	N/A	0.459	0.421	0.647	2e-34
Q9N4F2	199	Mediator of RNA polymeras	yes	N/A	0.450	0.502	0.436	2e-11

>sp|Q174D3|MED19_AEDAE Mediator of RNA polymerase II transcription subunit 19 OS=Aedes aegypti GN=MED19 PE=3 SV=1

 Score =  276 bits (705), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 171/206 (83%), Gaps = 4/206 (1%)

Query: 1   MMGDQYRKMEQYSPKTSPR----GSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLM 56
           MM DQ+RK+EQYSPK+SPR    G RSP+V+RQD++GTLKTTI LGKNPSIVHSGPFYLM
Sbjct: 9   MMTDQFRKVEQYSPKSSPRAGGAGGRSPVVARQDSSGTLKTTIQLGKNPSIVHSGPFYLM 68

Query: 57  KEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLR 116
           KEPPG+ E TG+ NLMA YGLEH+Y+KF GKK+KE LSSFLPNLPG+ID PG  DNSSLR
Sbjct: 69  KEPPGEGELTGATNLMAHYGLEHSYSKFSGKKVKEQLSSFLPNLPGVIDGPGHLDNSSLR 128

Query: 117 SVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT 176
           SVIEKPPI GK++LPLTSVQLAGFRLHPG LPEQY+    V +++HKNKHKKHKYK G  
Sbjct: 129 SVIEKPPIGGKDLLPLTSVQLAGFRLHPGPLPEQYKHLKSVPTRKHKNKHKKHKYKEGVA 188

Query: 177 SNPDANMGDVSYSDSHEKKHKKQKRH 202
              + +  + S  D+HEKKHKKQKRH
Sbjct: 189 PLSEQSALEASGLDTHEKKHKKQKRH 214

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q9VVL6|MED19_DROME Mediator of RNA polymerase II transcription subunit 19 OS=Drosophila melanogaster GN=MED19 PE=2 SV=1

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 153/204 (75%), Gaps = 4/204 (1%)

Query: 1   MMGDQYRKMEQYSPKTSPRGS-RSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MM +    M+  SPK+SP G  RSP+V+RQD++GTLKTTISLGK P+I+H+GPFY MKEP
Sbjct: 1   MMSNYGNMMD--SPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTGPFYSMKEP 58

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPG-SQDNSSLRSV 118
           P K+E TG  +LM  YGL HT  KF  KK KESL+SFL N+PGI D      +NS+LRSV
Sbjct: 59  PAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENSTLRSV 118

Query: 119 IEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSN 178
           IEKPPI GKE+LPLT VQLAGFRLHPG LPEQYR      +++HKNKHKK K+K G T+ 
Sbjct: 119 IEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTG 178

Query: 179 PDANMGDVSYSDSHEKKHKKQKRH 202
            ++ + D +  +++EKKHKKQKRH
Sbjct: 179 QESTLLDSAGLETYEKKHKKQKRH 202

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Drosophila melanogaster (taxid: 7227)

>sp|Q07FY3|MED19_XENTR Mediator of RNA polymerase II transcription subunit 19 OS=Xenopus tropicalis GN=med19 PE=2 SV=1

 Score =  157 bits (396), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 8/155 (5%)

Query: 50  SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
           +GPFY+++E PG S+ TGSVNL+  Y LEH+++KFCGKK+KE LS+FLP+LPG+ID PG+
Sbjct: 71  AGPFYILRELPGLSDLTGSVNLILHYNLEHSFSKFCGKKMKEKLSNFLPDLPGMIDTPGA 130

Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKH 169
           QDNSSLRS+IEKPPICG    PLT   L GFRLH G LPEQ R+ +       K   K  
Sbjct: 131 QDNSSLRSLIEKPPICGNSFTPLTGALLTGFRLHTGPLPEQCRLMH--IQPPKKKNKKHK 188

Query: 170 KYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHND 204
           + +T + + P+      + SDS  +K KK++R +D
Sbjct: 189 QSRTQEPAPPE------TPSDSDHRKKKKKQREDD 217

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q5EAY2|MED19_XENLA Mediator of RNA polymerase II transcription subunit 19 OS=Xenopus laevis GN=med19 PE=2 SV=1

 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 119/171 (69%), Gaps = 8/171 (4%)

Query: 50  SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
           +GPFYL++E PG S+ T S+NL+  Y LEH+++KFCGKK+KE LS+FLP+LPG+ID PG+
Sbjct: 62  AGPFYLLRELPGLSDLTASINLILHYNLEHSFSKFCGKKVKEKLSNFLPDLPGMIDTPGT 121

Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKH 169
            DNSSLRS+IEKPPICG    PLT   L GFRLH G LPEQ R+ +       K   K  
Sbjct: 122 PDNSSLRSLIEKPPICGNAFTPLTGALLTGFRLHTGPLPEQCRLMH--IQPPKKKNKKHK 179

Query: 170 KYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKKNR 220
           + +T + + P+      + SDS  +K KK++R +D + RKK+K +KKKK+R
Sbjct: 180 QSRTQEPAPPE------TPSDSDHRKKKKKQREDDPERRKKKKDKKKKKSR 224

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q8C1S0|MED19_MOUSE Mediator of RNA polymerase II transcription subunit 19 OS=Mus musculus GN=Med19 PE=1 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 86/117 (73%)

Query: 37  TTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSF 96
           T+   G + S   SGPFYLM+E PG +E TGS NL+  Y LE  YNKFCGKK+KE LS+F
Sbjct: 49  TSAPAGADKSTAGSGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNF 108

Query: 97  LPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
           LP+LPG+ID PGS DNSSLRS+IEKPPI G    P+T   L+GFRLH G LPEQ R+
Sbjct: 109 LPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRL 165

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q6DRL8|MD19B_DANRE Mediator of RNA polymerase II transcription subunit 19-B OS=Danio rerio GN=med19b PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 52  PFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQD 111
           PFYL++E P ++E TG  NL+  Y LEH YNKFCGKK+KE LS+FLP LPG+ID+PG QD
Sbjct: 61  PFYLLRELPMENELTGHTNLITHYNLEHAYNKFCGKKVKEKLSNFLPELPGMIDSPGIQD 120

Query: 112 NSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
           NSSLRS+IEKPP+C     PLT   L GFRLH G LPEQYR+
Sbjct: 121 NSSLRSLIEKPPVCNNSFSPLTGAMLTGFRLHTGPLPEQYRL 162

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|A0JLT2|MED19_HUMAN Mediator of RNA polymerase II transcription subunit 19 OS=Homo sapiens GN=MED19 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/104 (66%), Positives = 79/104 (75%)

Query: 50  SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
            GPFYLM+E PG +E TGS NL+  Y LE  YNKFCGKK+KE LS+FLP+LPG+ID PGS
Sbjct: 62  CGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLPGMIDLPGS 121

Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
            DNSSLRS+IEKPPI      P+T   LAGFRLH G LPEQ R+
Sbjct: 122 HDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRL 165

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q08C81|MD19A_DANRE Mediator of RNA polymerase II transcription subunit 19-A OS=Danio rerio GN=med19a PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%)

Query: 52  PFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQD 111
           PFYL++E P  ++ TG+ NL+  Y LEH YNKFCGKK+KE LS+FLP LPG+ID PG QD
Sbjct: 65  PFYLLRELPVGNDLTGNTNLITHYNLEHAYNKFCGKKVKEKLSNFLPELPGMIDCPGVQD 124

Query: 112 NSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
            SSLRS+IEKPP+CG    PLT   L GFRLH G LPEQYR+
Sbjct: 125 GSSLRSLIEKPPVCGNSFSPLTGALLTGFRLHTGPLPEQYRL 166

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q9N4F2|MED19_CAEEL Mediator of RNA polymerase II transcription subunit 19 OS=Caenorhabditis elegans GN=mdt-19 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 52  PFYLMKEP-PGKSEKTGSVNLMASYGLEHTYNKFCG-KKLKESLSSFLPNLPGIIDAPGS 109
           PFY +K   P  SE  G+ +L+ SY L      F G +++KE +SSFLP++ G      +
Sbjct: 21  PFYTLKALLPPYSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDAT 80

Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYR 152
           ++ SSLR++IEKPPI  KEI  LTS  + GF+L  G + E+YR
Sbjct: 81  KEASSLRALIEKPPI-HKEISNLTSSSMQGFKLSAGPVDERYR 122

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
332021052	241	Mediator of RNA polymerase II transcript	0.914	0.842	0.785	1e-79
307215207	242	Mediator of RNA polymerase II transcript	0.914	0.838	0.780	2e-79
322789777	242	hypothetical protein SINV_80541 [Solenop	0.914	0.838	0.775	3e-78
307188502	239	Mediator of RNA polymerase II transcript	0.909	0.845	0.773	4e-78
156552229	241	PREDICTED: mediator of RNA polymerase II	0.914	0.842	0.765	5e-78
383864417	242	PREDICTED: mediator of RNA polymerase II	0.914	0.838	0.770	5e-78
350408034	242	PREDICTED: mediator of RNA polymerase II	0.914	0.838	0.765	5e-78
340721840	242	PREDICTED: LOW QUALITY PROTEIN: mediator	0.914	0.838	0.765	5e-78
328786905	242	PREDICTED: mediator of RNA polymerase II	0.914	0.838	0.760	3e-77
91090398	237	PREDICTED: similar to mediator complex,	0.905	0.848	0.752	1e-75

>gi|332021052|gb|EGI61439.1| Mediator of RNA polymerase II transcription subunit 19 [Acromyrmex echinatior]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/205 (78%), Positives = 179/205 (87%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 1   MMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 60

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLMA YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG QDNSSLRSVI
Sbjct: 61  PGESELTGATNLMAYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHQDNSSLRSVI 120

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GKE+LPLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S 
Sbjct: 121 EKPPIGGKELLPLTSVQLAGFRLHPGPLPEQYRYINQAPQRKHKNKHKKHKHKPGEVLSG 180

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +    DV  SD+HEKKHKKQKRH+
Sbjct: 181 QETATTDVGGSDTHEKKHKKQKRHD 205

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215207|gb|EFN89979.1| Mediator of RNA polymerase II transcription subunit 19 [Harpegnathos saltator]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 179/205 (87%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMG+Q+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 2   MMGEQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 61

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLMA YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG QDNSSLRSVI
Sbjct: 62  PGESELTGATNLMAYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHQDNSSLRSVI 121

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GKE+LPLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+    
Sbjct: 122 EKPPIGGKELLPLTSVQLAGFRLHPGPLPEQYRYVNQAPQRKHKNKHKKHKHKPGEVLGG 181

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +A   DV  SD+HEKKHKKQKRH+
Sbjct: 182 QEATTTDVGGSDTHEKKHKKQKRHD 206

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789777|gb|EFZ14943.1| hypothetical protein SINV_80541 [Solenopsis invicta]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSI+HSGPFYLMKEP
Sbjct: 2   MMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSILHSGPFYLMKEP 61

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLMA YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG  DNSSLRSVI
Sbjct: 62  PGESELTGATNLMAYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHLDNSSLRSVI 121

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GKE+LPLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S 
Sbjct: 122 EKPPIGGKELLPLTSVQLAGFRLHPGPLPEQYRYINQAPQRKHKNKHKKHKHKPGEVLSG 181

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +    DV  SD+HEKKHKKQKRH+
Sbjct: 182 QETATTDVGGSDTHEKKHKKQKRHD 206

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188502|gb|EFN73239.1| Mediator of RNA polymerase II transcription subunit 19 [Camponotus floridanus]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 174/203 (85%), Gaps = 1/203 (0%)

Query: 2   MGDQYRKMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPG 61
           MGDQ+RK+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEPPG
Sbjct: 1   MGDQFRKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEPPG 60

Query: 62  KSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEK 121
           +SE TG+ NLM  YGLEH+Y KF GKK KE LSSFLPNLPGIID PG  DNSSLRSVIEK
Sbjct: 61  ESELTGATNLMGYYGLEHSYTKFSGKKPKEQLSSFLPNLPGIIDKPGHHDNSSLRSVIEK 120

Query: 122 PPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SNPD 180
           PPI GKE+LPLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S  +
Sbjct: 121 PPIGGKELLPLTSVQLAGFRLHPGPLPEQYRYVNQAPQRKHKNKHKKHKHKPGEVLSGQE 180

Query: 181 ANMGDVSYSDSHEKKHKKQKRHN 203
               DV  SD+HEKKHKKQKRH+
Sbjct: 181 VATTDVGGSDTHEKKHKKQKRHD 203

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552229|ref|XP_001607619.1| PREDICTED: mediator of RNA polymerase II transcription subunit 19-like isoform 1 [Nasonia vitripennis] gi|345490411|ref|XP_003426368.1| PREDICTED: mediator of RNA polymerase II transcription subunit 19-like isoform 2 [Nasonia vitripennis]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 1   MMGDQFRTKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 60

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLM  YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG QDNSSLRSVI
Sbjct: 61  PGESELTGARNLMTYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDTPGDQDNSSLRSVI 120

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GKE++PLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S 
Sbjct: 121 EKPPIGGKELVPLTSVQLAGFRLHPGPLPEQYRYINQAPQRKHKNKHKKHKHKPGEIPSG 180

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +  + D+   D+HEKKHKKQKRH+
Sbjct: 181 QETTVTDIGGVDTHEKKHKKQKRHD 205

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864417|ref|XP_003707675.1| PREDICTED: mediator of RNA polymerase II transcription subunit 19-like [Megachile rotundata]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 2   MMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 61

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLMA YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG  DNSSLRSVI
Sbjct: 62  PGESELTGATNLMAYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHVDNSSLRSVI 121

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GKE+L LTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  + 
Sbjct: 122 EKPPIGGKELLALTSVQLAGFRLHPGPLPEQYRYVNQAPQRKHKNKHKKHKHKPGEVPTG 181

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +A   D+  SD+HEKKHKKQKRH+
Sbjct: 182 QEATSTDIGGSDTHEKKHKKQKRHD 206

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408034|ref|XP_003488280.1| PREDICTED: mediator of RNA polymerase II transcription subunit 19-like [Bombus impatiens]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 2   MMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 61

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLM  YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG  DNSSLRSVI
Sbjct: 62  PGESELTGATNLMTYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHLDNSSLRSVI 121

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GK+++PLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S 
Sbjct: 122 EKPPIGGKDLIPLTSVQLAGFRLHPGPLPEQYRYVNQAPQRKHKNKHKKHKHKPGEVPSG 181

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +A   D+  SD+HEKKHKKQKRH+
Sbjct: 182 QEATATDIGGSDTHEKKHKKQKRHD 206

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721840|ref|XP_003399322.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 19-like [Bombus terrestris]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 2   MMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 61

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLM  YGLEH+Y+KF GKKLKE LSSFLPNLPGIID PG  DNSSLRSVI
Sbjct: 62  PGESELTGATNLMTYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHLDNSSLRSVI 121

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GK+++PLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S 
Sbjct: 122 EKPPIGGKDLIPLTSVQLAGFRLHPGPLPEQYRYVNQAPQRKHKNKHKKHKHKPGEVPSG 181

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +A   D+  SD+HEKKHKKQKRH+
Sbjct: 182 QEATATDIGGSDTHEKKHKKQKRHD 206

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786905|ref|XP_395809.3| PREDICTED: mediator of RNA polymerase II transcription subunit 19 [Apis mellifera]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 1   MMGDQYR-KMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
           MMGDQ+R K+EQYSPK+SPRG+RSP+VSRQD+TGTLKTTISLGKNPSIVHSGPFYLMKEP
Sbjct: 2   MMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEP 61

Query: 60  PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVI 119
           PG+SE TG+ NLM  YGL+H+Y+KF GKKLKE LSSFLPNLPGIID PG  DNSSLRSVI
Sbjct: 62  PGESELTGATNLMNFYGLQHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHLDNSSLRSVI 121

Query: 120 EKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT-SN 178
           EKPPI GK+++PLTSVQLAGFRLHPG LPEQYR  NQ   ++HKNKHKKHK+K G+  S 
Sbjct: 122 EKPPIGGKDLIPLTSVQLAGFRLHPGPLPEQYRYVNQAPQRKHKNKHKKHKHKPGEVPSG 181

Query: 179 PDANMGDVSYSDSHEKKHKKQKRHN 203
            +A   D+  SD+HEKKHKKQKRH+
Sbjct: 182 QEATTTDIGGSDTHEKKHKKQKRHD 206

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090398|ref|XP_970402.1| PREDICTED: similar to mediator complex, subunit, putative [Tribolium castaneum] gi|270013384|gb|EFA09832.1| hypothetical protein TcasGA2_TC011979 [Tribolium castaneum]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 173/202 (85%), Gaps = 1/202 (0%)

Query: 1   MMGDQYRKMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPP 60
           MMGDQ+RK+EQYSPK+SPRG+RSP+VSRQD++GTLKTTI LGKNPSIV SGPFYLMKEPP
Sbjct: 1   MMGDQFRKVEQYSPKSSPRGARSPVVSRQDSSGTLKTTILLGKNPSIVPSGPFYLMKEPP 60

Query: 61  GKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIE 120
           G+SE TG+ NLMA YGLEH+Y+KF GKKLKE LSSFLP LPG+ID+PG  DNSSLRSVIE
Sbjct: 61  GESELTGATNLMAYYGLEHSYSKFSGKKLKEQLSSFLPTLPGVIDSPGQHDNSSLRSVIE 120

Query: 121 KPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPD 180
           KPPI GKE+LPLTS+QL GFRLHPG LPEQYR AN    K+HKNKHKKHK+K G   + +
Sbjct: 121 KPPIGGKELLPLTSIQLDGFRLHPGALPEQYRYANAAPMKKHKNKHKKHKHKDGGLPSQE 180

Query: 181 ANMGDVSYSDSHEKKHKKQKRH 202
             + D   SD+HEKKHKKQKRH
Sbjct: 181 TTITDAG-SDTHEKKHKKQKRH 201

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
FB|FBgn0036761	337	MED19 "Mediator complex subuni	0.887	0.584	0.557	1.5e-51
UNIPROTKB|F1NC09	238	MED19 "Uncharacterized protein	0.648	0.605	0.546	4.9e-37
UNIPROTKB|F1SJY0	244	MED19 "Uncharacterized protein	0.702	0.639	0.524	6.3e-37
UNIPROTKB|A7YWK4	244	MED19 "MED19 protein" [Bos tau	0.684	0.622	0.531	1.3e-36
UNIPROTKB|E2R409	252	MED19 "Uncharacterized protein	0.684	0.603	0.531	1.3e-36
RGD|1311926	244	Med19 "mediator complex subuni	0.707	0.643	0.515	2.1e-36
MGI|MGI:1914234	244	Med19 "mediator of RNA polymer	0.707	0.643	0.515	3.5e-36
UNIPROTKB|A0JLT2	244	MED19 "Mediator of RNA polymer	0.684	0.622	0.518	6.5e-35
UNIPROTKB|J3KR33	244	MED19 "Mediator of RNA polymer	0.684	0.622	0.518	6.5e-35
ZFIN|ZDB-GENE-060929-232	242	med19a "mediator complex subun	0.617	0.566	0.528	1.7e-34

FB|FBgn0036761 MED19 "Mediator complex subunit 19" [Drosophila melanogaster (taxid:7227)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 112/201 (55%), Positives = 138/201 (68%)

Query:     1 MMGDQYRKMEQYSPKTSPRGS-RSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
             MM +    M+  SPK+SP G  RSP+V+RQD++GTLKTTISLGK P+I+H+GPFY MKEP
Sbjct:     1 MMSNYGNMMD--SPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTGPFYSMKEP 58

Query:    60 PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDA-PGSQDNSSLRSV 118
             P K+E TG  +LM  YGL HT  KF  KK KESL+SFL N+PGI D      +NS+LRSV
Sbjct:    59 PAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENSTLRSV 118

Query:   119 IEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXXXXXXXXXXXXXTGDTSN 178
             IEKPPI GKE+LPLT VQLAGFRLHPG LPEQYR      +              G T+ 
Sbjct:   119 IEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTG 178

Query:   179 PDANMGDVSYSDSHEKKHKKQ 199
              ++ + D +  +++EKKHKKQ
Sbjct:   179 QESTLLDSAGLETYEKKHKKQ 199

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1NC09 MED19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 82/150 (54%), Positives = 98/150 (65%)

Query:    50 SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
             +GPFYL++E PG +E TGS NL+  Y LEH YNKFCGKK+KE LS+FLP+LPG+ID PGS
Sbjct:    56 AGPFYLLRELPGSTELTGSTNLITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDLPGS 115

Query:   110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXXXXXXXXXX 169
              DNSSLRS+IEKPPICG    PLT   L GFRLH G LPEQ R+ + +            
Sbjct:   116 HDNSSLRSLIEKPPICGSSFTPLTGTMLTGFRLHAGPLPEQCRLMH-IQPPKKKNKHKHK 174

Query:   170 XXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
                T D   P+      S SD H+KK KK+
Sbjct:   175 QSRTQDPVPPETP----SDSD-HKKKKKKK 199

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|F1SJY0 MED19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 85/162 (52%), Positives = 103/162 (63%)

Query:    38 TISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFL 97
             T + G + S    GPFYLM+E PG +E TGS NL+  Y LEH+YNKFCGKK+KE LS+FL
Sbjct:    50 TAAPGSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFL 109

Query:    98 PNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQV 157
             P+LPG+ID PGS DNSSLRS+IEKPPI G    P+T   LAGFRLH G LPEQ R+ + +
Sbjct:   110 PDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMH-I 168

Query:   158 ASXXXXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
                            T D   P+      S SD H+KK KK+
Sbjct:   169 QPPKKKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|A7YWK4 MED19 "MED19 protein" [Bos taurus (taxid:9913)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 84/158 (53%), Positives = 100/158 (63%)

Query:    42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
             G + S    GPFYLM+E PG +E TGS NL+  Y LEH YNKFCGKK+KE LS+FLP+LP
Sbjct:    54 GSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHAYNKFCGKKVKEKLSNFLPDLP 113

Query:   102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
             G+ID PGS DNSSLRS+IEKPPI G    P+T   LAGFRLH G LPEQ R+ + +    
Sbjct:   114 GMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 172

Query:   162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
                        T D   P+      S SD H+KK KK+
Sbjct:   173 KKNKQKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E2R409 MED19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 84/158 (53%), Positives = 101/158 (63%)

Query:    42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
             G + S    GPFYLM+E PG +E TGS NL+  Y LEH+YNKFCGKK+KE LS+FLP+LP
Sbjct:    62 GADKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFLPDLP 121

Query:   102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
             G+ID PGS DNSSLRS+IEKPPI G    P+T   LAGFRLH G LPEQ R+ + +    
Sbjct:   122 GMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 180

Query:   162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
                        T D   P+      S SD H+KK KK+
Sbjct:   181 KKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 213

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

RGD|1311926 Med19 "mediator complex subunit 19" [Rattus norvegicus (taxid:10116)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 84/163 (51%), Positives = 103/163 (63%)

Query:    37 TTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSF 96
             T+  +G + S   SGPFYLM+E PG +E TGS NL+  Y LE  YNKFCGKK+KE LS+F
Sbjct:    49 TSAPVGADKSTAGSGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNF 108

Query:    97 LPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQ 156
             LP+LPG+ID PGS DNSSLRS+IEKPPI G    P+T   L+GFRLH G LPEQ R+ + 
Sbjct:   109 LPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRLMH- 167

Query:   157 VASXXXXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
             +               T D   P+      S SD H+KK KK+
Sbjct:   168 IQPPKKKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0016592 "mediator complex" evidence=IEA;ISO

MGI|MGI:1914234 Med19 "mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 84/163 (51%), Positives = 102/163 (62%)

Query:    37 TTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSF 96
             T+   G + S   SGPFYLM+E PG +E TGS NL+  Y LE  YNKFCGKK+KE LS+F
Sbjct:    49 TSAPAGADKSTAGSGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNF 108

Query:    97 LPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQ 156
             LP+LPG+ID PGS DNSSLRS+IEKPPI G    P+T   L+GFRLH G LPEQ R+ + 
Sbjct:   109 LPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRLMH- 167

Query:   157 VASXXXXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
             +               T D   P+      S SD H+KK KK+
Sbjct:   168 IQPPKKKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016592 "mediator complex" evidence=IDA

UNIPROTKB|A0JLT2 MED19 "Mediator of RNA polymerase II transcription subunit 19" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 82/158 (51%), Positives = 98/158 (62%)

Query:    42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
             G + S    GPFYLM+E PG +E TGS NL+  Y LE  YNKFCGKK+KE LS+FLP+LP
Sbjct:    54 GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113

Query:   102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
             G+ID PGS DNSSLRS+IEKPPI      P+T   LAGFRLH G LPEQ R+ + +    
Sbjct:   114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 172

Query:   162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
                        T D   P+      S SD H+KK KK+
Sbjct:   173 KKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|J3KR33 MED19 "Mediator of RNA polymerase II transcription subunit 19" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 82/158 (51%), Positives = 98/158 (62%)

Query:    42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
             G + S    GPFYLM+E PG +E TGS NL+  Y LE  YNKFCGKK+KE LS+FLP+LP
Sbjct:    54 GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113

Query:   102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
             G+ID PGS DNSSLRS+IEKPPI      P+T   LAGFRLH G LPEQ R+ + +    
Sbjct:   114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 172

Query:   162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
                        T D   P+      S SD H+KK KK+
Sbjct:   173 KKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

ZFIN|ZDB-GENE-060929-232 med19a "mediator complex subunit 19a" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 74/140 (52%), Positives = 94/140 (67%)

Query:    14 PKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMA 73
             P  S   +++PI ++    G L     L + P  ++  PFYL++E P  ++ TG+ NL+ 
Sbjct:    30 PPPSMPPNQAPIAAQMP--GQLGDDGPLLRKPGAMNE-PFYLLRELPVGNDLTGNTNLIT 86

Query:    74 SYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLT 133
              Y LEH YNKFCGKK+KE LS+FLP LPG+ID PG QD SSLRS+IEKPP+CG    PLT
Sbjct:    87 HYNLEHAYNKFCGKKVKEKLSNFLPELPGMIDCPGVQDGSSLRSLIEKPPVCGNSFSPLT 146

Query:   134 SVQLAGFRLHPGNLPEQYRI 153
                L GFRLH G LPEQYR+
Sbjct:   147 GALLTGFRLHTGPLPEQYRL 166

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DRL8	MD19B_DANRE	No assigned EC number	0.6568	0.4594	0.425	yes	N/A
Q9VVL6	MED19_DROME	No assigned EC number	0.6078	0.9009	0.5934	yes	N/A
Q174D3	MED19_AEDAE	No assigned EC number	0.7184	0.9099	0.7984	N/A	N/A
Q08C81	MD19A_DANRE	No assigned EC number	0.6470	0.4594	0.4214	yes	N/A
Q07FY3	MED19_XENTR	No assigned EC number	0.5225	0.6621	0.5903	yes	N/A
Q8C1S0	MED19_MOUSE	No assigned EC number	0.6239	0.5270	0.4795	yes	N/A
A0JLT2	MED19_HUMAN	No assigned EC number	0.6634	0.4684	0.4262	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	222
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	1e-66

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score =  202 bits (516), Expect = 1e-66
 Identities = 112/170 (65%), Positives = 131/170 (77%), Gaps = 7/170 (4%)

Query: 51  GPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQ 110
           GPFYL+KE PG SE TGS NL+  YGLEH+Y+KFCGKK+KE LSSFLP+LPG+ID PG+ 
Sbjct: 1   GPFYLLKELPGYSELTGSTNLLTHYGLEHSYSKFCGKKVKEKLSSFLPHLPGMIDLPGTP 60

Query: 111 DNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKR-HKNKHKKH 169
           +NSSLRS+IEKPPI GKE+LPLTSVQLAGFRLHPG LPEQYR+ +    K+ HK+KHKKH
Sbjct: 61  ENSSLRSLIEKPPIGGKELLPLTSVQLAGFRLHPGPLPEQYRLMHIQPPKKKHKHKHKKH 120

Query: 170 KYK-TGDTSNPDANMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKK 218
           + +       P     D      HEKKHKK+K   DDKERKK+KKEKKKK
Sbjct: 121 RTQDPLPEETPS----DSEGLKGHEKKHKKKKHE-DDKERKKKKKEKKKK 165

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF10278	178	Med19: Mediator of RNA pol II transcription subuni	100.0
KOG4043|consensus	214		100.0

>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=1.7e-67  Score=446.71  Aligned_cols=167  Identities=68%  Similarity=1.048  Sum_probs=150.9

Q ss_pred             CCeeeccCCCCCCCCCCcchhHHhhCchhhhHhhhcccchhhhhhhCCCCCCcccCCCCCCCcchhhhhcCCCCCCcccc
Q psy10479         51 GPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEIL  130 (222)
Q Consensus        51 ~PFYLmke~P~~sELTGa~dLishYgLe~~y~kFcgKklKEsLSsFLPnLpG~id~~~~~d~ssLrsLIekPPI~gKei~  130 (222)
                      +|||||+++|+.+|||||+|||+||||+|+|++|||++|+|+||+||||||||||+++++|||+||||||+|||+|++|+
T Consensus         1 ~pfyll~~~p~~~eltG~~nL~~~y~L~~~y~kf~~kklke~lSsFLp~lpG~~~~~~~~d~ssLrslIekPPi~gkei~   80 (178)
T PF10278_consen    1 EPFYLLKEPPPDSELTGATNLITHYGLEHSYNKFCGKKLKESLSSFLPHLPGNIDLPGSQDNSSLRSLIEKPPIGGKEIT   80 (178)
T ss_pred             CCceeccCCCCccccccchhHHHHcCcHHHHHHHhCCcchhhHHHHccCCCCcccCCCCcCcchHHHHhhCCCCCCccCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHhhhccccCCCCCchhhhhhhhc-hhhhccccccccccCCCCCCCCCCCCCCCCCCchhHHHHHhhhccCchHHHH
Q psy10479        131 PLTSVQLAGFRLHPGNLPEQYRIANQV-ASKRHKNKHKKHKYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHNDDKERK  209 (222)
Q Consensus       131 PLs~~~L~gFrL~pGplPEqyr~~~~~-~~~k~k~khkk~k~~~~~~~~~~~~~~~~~~~~~~ekk~kk~kkh~~~~erk  209 (222)
                      ||+++||+||||||||||||||++.++ |.++||+||+++++++.   ..+....|..+++++++||||+| +++|++||
T Consensus        81 pL~~~~L~gFrL~pGplPE~yr~~~~~~P~~k~K~Khk~~~~k~~---~~~~~~~d~~~~~~~~kK~KKkK-~~~DkeRK  156 (178)
T PF10278_consen   81 PLSSSQLAGFRLHPGPLPEQYRLLHQQPPKKKHKHKHKKHRHKDP---EDQDADSDDDDDKGHEKKHKKKK-REKDKERK  156 (178)
T ss_pred             cCCHHHHhhccCCCCCCchHHhhhhccCcchhhhcccccccccCC---CCccccccccccccccchhhhhc-cccccchh
Confidence            999999999999999999999999998 55678999999999883   33445556777799999999998 55567788


Q ss_pred             HHHHHHHhhhhc
Q psy10479        210 KRKKEKKKKNRI  221 (222)
Q Consensus       210 k~kk~~kkkk~~  221 (222)
                      |+||++|+||+.
T Consensus       157 K~KKeKk~kK~K  168 (178)
T PF10278_consen  157 KKKKEKKKKKKK  168 (178)
T ss_pred             hhHHHHHHHhhc
Confidence            888877776653

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>KOG4043|consensus

Probab=100.00  E-value=3.3e-63  Score=423.11  Aligned_cols=197  Identities=48%  Similarity=0.703  Sum_probs=191.0

Q ss_pred             cccccCCCCCeeEEEeCCCCCcccccCCeeeccCCCCCCCCCCcchhHHhhCchhhhHhhhc-ccchhhhhhhCCCCCCc
Q psy10479         25 IVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCG-KKLKESLSSFLPNLPGI  103 (222)
Q Consensus        25 ~~s~~~ssgtlkttI~lG~~p~i~~~~PFYLmke~P~~sELTGa~dLishYgLe~~y~kFcg-KklKEsLSsFLPnLpG~  103 (222)
                      ++.+|++||||+|||+||+.++|++.++||||.++|..+||||++|||+.|+|.|+..+|.+ +++||+|++||||++|.
T Consensus         1 m~a~q~~SGtlktti~lgKs~siih~g~f~~~~e~PakaEiqGd~DLl~eY~L~ht~~~FkeskkfKEkiaSFL~~I~G~   80 (214)
T KOG4043|consen    1 MNAPQACSGTLKTTIPLGKSKSIIHEGFFTLKAELPAKAEIQGDHDLLMEYELGHTEGGFKESKKFKEKIASFLPHIIGE   80 (214)
T ss_pred             CCcccccCCccccccCCCCCcccccCCchhhhccCCchhhcccchhhhhhhcccccccccchhHHHHHHHHHHhhccCcc
Confidence            35679999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             ccCCCCC--CCcchhhhhcCCCCCCcccccCCHHhhhccccCCCCCchhhhhhhhchhhhccccccccccCCCCCCCCCC
Q psy10479        104 IDAPGSQ--DNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPDA  181 (222)
Q Consensus       104 id~~~~~--d~ssLrsLIekPPI~gKei~PLs~~~L~gFrL~pGplPEqyr~~~~~~~~k~k~khkk~k~~~~~~~~~~~  181 (222)
                      +|+.+..  ++|+||+|||+|||+|+++.||+.+||+||+|||||||||||.++..|..+|+|+|++-||++|.+-++++
T Consensus        81 ~dL~aThpvE~SsLRalIEKPPIggeellpLTp~qlaGFkLh~GPl~EqYR~~f~~pa~ehkNk~kkeKhkdg~t~gQes  160 (214)
T KOG4043|consen   81 FDLDATHPVEASSLRALIEKPPIGGEELLPLTPSQLAGFKLHAGPLDEQYRHLFERPAEEHKNKAKKEKHKDGRTRGQES  160 (214)
T ss_pred             ccccccCcchhHHHHHHHhcCCCCccccccCChhhhcceecCCCCchHHHHHHhcChhhhccchHHHHhhhcceeccccc
Confidence            9999775  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhHHHHHhhhccCchHHHHHHHHHHHhhhhc
Q psy10479        182 NMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKKNRI  221 (222)
Q Consensus       182 ~~~~~~~~~~~ekk~kk~kkh~~~~erkk~kk~~kkkk~~  221 (222)
                      ...|.+++++.++.|||+|||++|+||||+|++++.++++
T Consensus       161 ~~ld~a~~ET~e~~hKK~KkhedDKeRKK~KeEk~~~eKn  200 (214)
T KOG4043|consen  161 DALDFADDETEEGFHKKHKKHEDDKERKKEKEEKGDAEKN  200 (214)
T ss_pred             cccccccchhhhcchhhhhhhhhhHHHHHHHHHhhhhhhc
Confidence            9999999999999999999999999999999998887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00