Psyllid ID: psy10480

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
MMCSGSCQKDKSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRVVMGL
cccccccccccccccccccccccccccccccccccccEEEccccEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHHccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccccEEEEcc
cccccccccccccccccccccccccccccccccccEEEEEcccccccEEcccccEEEccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccEEEEEEEcccccHHHHHHHHHHHccccccccccccEEEEEEEcccccHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHcEccccccccccccHHHHHcccEEccccccccccccccccEcccccccccccccccccccccEEEEEcHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEcHHHHcccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccEEEEcc
mmcsgscqkdkskdvefvcpdeggngnyadpstcrrfyqcvdhhpyvslcpsglyfddIKKLctfknearcgplpttpapiteaptdlatrcdkssctlpycfcskdgtiipggldaedtpQMILLTFdgavnlnnydhYQKVFsdsrknpngcpmkgtffisheysdYSMIQNLANRGHEIGVETIslqdglqdkgyEEWVGEMIGMREILHHFAnitrsdivgmrapfllpgrntqfedfgfiydssvsvpalkfpvwpytldhkiphecksgtcptksfpgvwevplnahfvesyegghcpyldqcvlhnhdSDEVLEWLKEDFNKyytqnkapymmpfhtnwFQIKELEQGLHKFLDwaaqkpdvWFVTITQALTwmtnpksskellnydawkcaksetapleacnlpnkcalgfrppeanisatRVVMGL
mmcsgscqkdkskdvefvcpdeggngnyadpSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEArcgplpttpapiteaptDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSdsrknpngCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCalgfrppeanisatrvvmgl
MMCSGSCQKDKSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGplpttpapiteaptDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRVVMGL
****************FVC*****NGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDS***PNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFR***************
*********************EGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSK***********EDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKE*L*****************CNLPNKCALGFRPPEANISATRVVMGL
************KDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRVVMGL
*****S********VEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRVVMGL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMCSGSCQKDKSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRVVMGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
242014408481 conserved hypothetical protein [Pediculu 0.972 0.879 0.737 0.0
160333785490 chitin deacetylase 4 precursor [Triboliu 0.974 0.865 0.735 0.0
193652401479 PREDICTED: hypothetical protein LOC10016 0.970 0.881 0.722 0.0
328791955486 PREDICTED: hypothetical protein LOC72581 0.977 0.874 0.712 0.0
380017152486 PREDICTED: uncharacterized protein LOC10 0.977 0.874 0.712 0.0
383855560484 PREDICTED: uncharacterized protein LOC10 0.956 0.859 0.725 0.0
156546448489 PREDICTED: hypothetical protein LOC10012 0.986 0.877 0.713 0.0
307177662483 hypothetical protein EAG_00698 [Camponot 0.956 0.861 0.718 0.0
332030268 638 hypothetical protein G5I_01195 [Acromyrm 0.956 0.652 0.713 0.0
158288941492 AGAP000359-PA [Anopheles gambiae str. PE 0.979 0.865 0.720 0.0
>gi|242014408|ref|XP_002427883.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512352|gb|EEB15145.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/426 (73%), Positives = 362/426 (84%), Gaps = 3/426 (0%)

Query: 11  KSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEAR 70
           ++KD EFVCPD  GNGN+ADP+TCRRFYQCVD +PY++ CPSGLYFDDI KLCTFK+EAR
Sbjct: 24  QTKDKEFVCPDVEGNGNFADPATCRRFYQCVDGYPYLNRCPSGLYFDDINKLCTFKSEAR 83

Query: 71  CGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDG 130
           CGP+PTTPAPITEAP DLA +C+ S C+LPYCFCSKDGT IPG LD EDTPQMI+LTF+G
Sbjct: 84  CGPIPTTPAPITEAPVDLAVKCNTSECSLPYCFCSKDGTKIPGDLDPEDTPQMIILTFNG 143

Query: 131 AVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQ 190
           A+N NNY+ YQKVF  +RKNPNGC ++GTFF+SHEYS+Y+M+Q L++ GHEI  ETISLQ
Sbjct: 144 AINQNNYEQYQKVFPSTRKNPNGCEIRGTFFVSHEYSNYNMVQQLSHDGHEIATETISLQ 203

Query: 191 DGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQF---EDFGFIYD 247
             LQDKGYEEWVGEMIGMREIL HFANI + DIVGMRAPFL PGRN Q+   EDFG+IYD
Sbjct: 204 RDLQDKGYEEWVGEMIGMREILRHFANIPKQDIVGMRAPFLKPGRNAQYEVLEDFGYIYD 263

Query: 248 SSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLD 307
           SS+S+P LK P+WPYTLD+KIPHECKSGTCPTKSF G+WEVPLNAH+VE+YEGGHCP+LD
Sbjct: 264 SSISIPPLKVPIWPYTLDYKIPHECKSGTCPTKSFQGIWEVPLNAHYVETYEGGHCPHLD 323

Query: 308 QCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKP 367
           QCVLHNH  D+V EWL+EDF +YY QN+APYMMPFHTNWFQIKELE+GL KFLDW    P
Sbjct: 324 QCVLHNHSEDDVFEWLQEDFLRYYEQNRAPYMMPFHTNWFQIKELEKGLQKFLDWTQTLP 383

Query: 368 DVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANIS 427
           DVWFVTITQAL WMT+P  +K L NYDAW C K E +    CNLPN CAL F+P E NI+
Sbjct: 384 DVWFVTITQALVWMTDPTETKTLNNYDAWNCQKREISTPAPCNLPNNCALSFKPGENNIT 443

Query: 428 ATRVVM 433
            TR ++
Sbjct: 444 TTRYLV 449

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|160333785|ref|NP_001103903.1| chitin deacetylase 4 precursor [Tribolium castaneum] gi|158562480|gb|ABW74146.1| chitin deacetylase 4 [Tribolium castaneum] gi|270005565|gb|EFA02013.1| hypothetical protein TcasGA2_TC007635 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193652401|ref|XP_001951879.1| PREDICTED: hypothetical protein LOC100161729 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328791955|ref|XP_001120478.2| PREDICTED: hypothetical protein LOC725813 [Apis mellifera] Back     alignment and taxonomy information
>gi|380017152|ref|XP_003692526.1| PREDICTED: uncharacterized protein LOC100872047 [Apis florea] Back     alignment and taxonomy information
>gi|383855560|ref|XP_003703278.1| PREDICTED: uncharacterized protein LOC100879522 [Megachile rotundata] Back     alignment and taxonomy information
>gi|156546448|ref|XP_001607989.1| PREDICTED: hypothetical protein LOC100123586 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307177662|gb|EFN66708.1| hypothetical protein EAG_00698 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332030268|gb|EGI70042.1| hypothetical protein G5I_01195 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|158288941|ref|XP_310753.4| AGAP000359-PA [Anopheles gambiae str. PEST] gi|157018813|gb|EAA06323.5| AGAP000359-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
FB|FBgn0052499486 Cda4 "Chitin deacetylase-like 0.986 0.882 0.637 1.3e-164
FB|FBgn0032598577 ChLD3 "ChLD3" [Drosophila mela 0.754 0.568 0.428 1.1e-82
FB|FBgn0261341555 verm "vermiform" [Drosophila m 0.751 0.589 0.419 5.2e-77
FB|FBgn0260653541 serp "serpentine" [Drosophila 0.735 0.591 0.418 6.7e-75
FB|FBgn00519731998 Cda5 "Chitin deacetylase-like 0.737 0.160 0.409 5.4e-70
WB|WBGene000029831884 lgx-1 [Caenorhabditis elegans 0.747 0.172 0.368 1.3e-56
WB|WBGene000186072444 F48E3.8b [Caenorhabditis elega 0.747 0.132 0.343 4.1e-53
FB|FBgn0034197397 Cda9 "Chitin deacetylase-like 0.671 0.735 0.362 6.2e-46
FB|FBgn0052499 Cda4 "Chitin deacetylase-like 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
 Identities = 276/433 (63%), Positives = 340/433 (78%)

Query:     1 MMCSGSCQKDKSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIK 60
             ++ +G+  + K K+ EF CP    NGNYADP+TCRRFYQCVD +PY++ CPSGL+FDD++
Sbjct:    11 LVITGANGQGKEKE-EFQCPSHIANGNYADPATCRRFYQCVDGYPYLNRCPSGLFFDDVQ 69

Query:    61 KLCTFKNEARCGXXXXXXXXXXXXXXDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDT 120
             K CTFK+EA+CG              D A RC+  +C LPYCFCSKDGT IPG L+ E  
Sbjct:    70 KFCTFKDEAKCGPLPTTPAPATEAPADTAQRCNTENCALPYCFCSKDGTQIPGDLEPEKI 129

Query:   121 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGH 180
             PQ+I+LTFDGAVNLNNY HYQK+F   RKNPNGC ++GTFF+SHEYS+Y  IQ+L   GH
Sbjct:   130 PQIIMLTFDGAVNLNNYQHYQKIFDGKRKNPNGCLIRGTFFMSHEYSNYQQIQHLGYYGH 189

Query:   181 EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQF- 239
             EIG E+IS Q GLQDKGYEEWVGEMIGMREIL HFAN++ +D+VGMRAPFL PGRNTQ+ 
Sbjct:   190 EIGTESISQQQGLQDKGYEEWVGEMIGMREILRHFANVSVNDVVGMRAPFLKPGRNTQYK 249

Query:   240 --EDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVES 297
               EDFG+IYDSS++VP +  PVWPYTLD+KI HECKSGTCP+++FPGVWEVPLN H+VE 
Sbjct:   250 VLEDFGYIYDSSITVPPVPVPVWPYTLDYKISHECKSGTCPSRTFPGVWEVPLNTHYVEG 309

Query:   298 YEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLH 357
             YEGGHCPYLDQCVLHN D +EV +WL+EDF++YY QNKAPYMMPFHTNWFQ K LE GLH
Sbjct:   310 YEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSRYYEQNKAPYMMPFHTNWFQTKPLENGLH 369

Query:   358 KFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCAL 417
             KFLDWA + PDV+ +T+TQ L ++T+PK  +++   ++WKC KS +   + CN+   CAL
Sbjct:   370 KFLDWALELPDVYILTVTQMLQYVTDPKELRDVSQIESWKCDKSVSVAPKPCNIWQTCAL 429

Query:   418 GFRPPEANISATR 430
              F+ PE N++ TR
Sbjct:   430 PFKIPEQNLTDTR 442
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0005576 "extracellular region" evidence=IEA
GO:0006030 "chitin metabolic process" evidence=IEA
GO:0008061 "chitin binding" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
FB|FBgn0032598 ChLD3 "ChLD3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0261341 verm "vermiform" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0260653 serp "serpentine" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0051973 Cda5 "Chitin deacetylase-like 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00002983 lgx-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00018607 F48E3.8b [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0034197 Cda9 "Chitin deacetylase-like 9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
cd10974269 cd10974, CE4_CDA_like_1, Putative catalytic domain 1e-166
cd10975268 cd10975, CE4_CDA_like_2, Putative catalytic domain 2e-96
cd10919273 cd10919, CE4_CDA_like, Putative catalytic domain o 5e-80
pfam0160753 pfam01607, CBM_14, Chitin binding Peritrophin-A do 7e-10
smart0049449 smart00494, ChtBD2, Chitin-binding domain type 2 1e-08
cd10976299 cd10976, CE4_CDA_like_3, Putative catalytic domain 2e-06
cd10941258 cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalyti 3e-06
cd10938258 cd10938, CE4_HpPgdA_like, Catalytic domain of Heli 0.002
cd10585142 cd10585, CE4_SF, Catalytic NodB homology domain of 0.002
cd10967202 cd10967, CE4_GLA_like_6s, Putative catalytic NodB 0.004
>gnl|CDD|200596 cd10974, CE4_CDA_like_1, Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa) Back     alignment and domain information 
 Score =  466 bits (1201), Expect = e-166
 Identities = 147/269 (54%), Positives = 188/269 (69%), Gaps = 5/269 (1%)

Query: 121 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGH 180
           PQMI LTFD A+N NN + Y+K+F+  R NPNGCP+KGTFF+SHEY++Y  +Q L  +GH
Sbjct: 1   PQMITLTFDDAINDNNIELYKKIFNGKRNNPNGCPIKGTFFVSHEYTNYQAVQKLHRKGH 60

Query: 181 EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFE 240
           EI V +I+  D   +  YE+WV EM+GMREIL  FANIT ++IVGMRAPFL  G N QFE
Sbjct: 61  EIAVHSITHNDDENNATYEDWVKEMVGMREILEKFANITDNEIVGMRAPFLRVGGNRQFE 120

Query: 241 ---DFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVES 297
              +FGF+YDSS++ P    P+WPYTLD+K+PHEC    CPT+SFPGVWE+ LN   V  
Sbjct: 121 MMEEFGFLYDSSITAPPSNVPLWPYTLDYKMPHECHGQNCPTRSFPGVWEMVLNELDVRD 180

Query: 298 YEGGHCPY-LDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIK-ELEQG 355
              G  P  +D   L+    D+V EWL+ +F ++Y  N+APY + FHTNW + K EL + 
Sbjct: 181 DPQGDEPLAMDDSCLNILSGDQVYEWLQHNFERHYLTNRAPYGLYFHTNWLKTKNELLRA 240

Query: 356 LHKFLDWAAQKPDVWFVTITQALTWMTNP 384
           L KFLD   Q PDV+FVT+TQA+ WM NP
Sbjct: 241 LQKFLDEILQLPDVYFVTMTQAIQWMQNP 269

Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase 4 (CE4) superfamily. This family includes many CDA-like proteins mainly from insects, which contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. In addition to the CDA-like domain, family members contain two additional domains, a chitin-binding peritrophin-A domain (ChBD) and a low-density lipoprotein receptor class A domain (LDLa), or have the ChBD domain but do not have the LDLa domain. Length = 269
>gnl|CDD|200597 cd10975, CE4_CDA_like_2, Putative catalytic domain of chitin deacetylase-like proteins Back     alignment and domain information
>gnl|CDD|200545 cd10919, CE4_CDA_like, Putative catalytic domain of chitin deacetylase-like proteins from insects and similar proteins Back     alignment and domain information
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain Back     alignment and domain information
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 Back     alignment and domain information
>gnl|CDD|200598 cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins Back     alignment and domain information
>gnl|CDD|200566 cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA) Back     alignment and domain information
>gnl|CDD|200563 cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins Back     alignment and domain information
>gnl|CDD|213020 cd10585, CE4_SF, Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily Back     alignment and domain information
>gnl|CDD|200589 cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 435
TIGR03212297 uraD_N-term-dom putative urate catabolism protein. 100.0
PRK15394296 4-deoxy-4-formamido-L-arabinose-phosphoundecapreno 99.95
TIGR03006265 pepcterm_polyde polysaccharide deactylase family p 99.93
TIGR02764191 spore_ybaN_pdaB polysaccharide deacetylase family 99.93
TIGR02884224 spore_pdaA delta-lactam-biosynthetic de-N-acetylas 99.92
TIGR02873268 spore_ylxY probable sporulation protein, polysacch 99.92
PF01522123 Polysacc_deac_1: Polysaccharide deacetylase; Inter 99.87
COG0726267 CDA1 Predicted xylanase/chitin deacetylase [Carboh 99.82
PRK14581 672 hmsF outer membrane N-deacetylase; Provisional 99.6
PRK14582 671 pgaB outer membrane N-deacetylase; Provisional 99.58
PF0160753 CBM_14: Chitin binding Peritrophin-A domain; Inter 99.1
smart0049456 ChtBD2 Chitin-binding domain type 2. 99.04
PF09960585 DUF2194: Uncharacterized protein conserved in bact 97.86
PF10096243 DUF2334: Uncharacterized protein conserved in bact 97.83
COG3233233 Predicted deacetylase [General function prediction 97.58
PF03065360 Glyco_hydro_57: Glycosyl hydrolase family 57; Inte 96.2
PF11959133 DUF3473: Domain of unknown function (DUF3473); Int 95.72
PF15421425 Polysacc_deac_3: Putative polysaccharide deacetyla 94.42
COG1449 615 Alpha-amylase/alpha-mannosidase [Carbohydrate tran 93.47
PF04748213 Polysacc_deac_2: Divergent polysaccharide deacetyl 91.74
KOG1958|consensus 1129 80.2
>TIGR03212 uraD_N-term-dom putative urate catabolism protein Back     alignment and domain information 
Probab=100.00  E-value=3.7e-36  Score=295.32  Aligned_cols=222  Identities=14%  Similarity=0.226  Sum_probs=182.4

Q ss_pred             eEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEeccc--CCHHHHHHHHHcCCeeeeccccccCCCCCCCHHH
Q psy10480        123 MILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEE  200 (435)
Q Consensus       123 ~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~--~~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~e~  200 (435)
                      .-.+|+-+.+...++++++++|+++     |  ||||||+++..  .++++|++|+++|||||+||++|. .+..++.++
T Consensus        65 ~~~~s~~~YG~rvG~~RiLdlL~~~-----g--v~aTffv~g~~~e~~P~~v~~i~~~GHEIg~Hg~~H~-~~~~ls~~~  136 (297)
T TIGR03212        65 MSMESLYEYGSRAGFWRLLRLFTER-----G--IPVTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWI-DYQDMDEAQ  136 (297)
T ss_pred             ccchhhhhhcchhCHHHHHHHHHHc-----C--CCEEEEeEHHHHHHCHHHHHHHHHcCCEEeeccccCc-ccccCCHHH
Confidence            4477899999999999999999998     7  99999999986  457999999999999999999997 577899999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhh-cCceEeeecccCCCCCCCCccccCCCCCCCccCCCC
Q psy10480        201 WVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FED-FGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTC  277 (435)
Q Consensus       201 ~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~-~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~c  277 (435)
                      ++++|.++.++|++++|+   .++|||++  ..+.+++  +++ .||+|+||++.++  .|+|   +...          
T Consensus       137 e~~~i~~s~~~i~~~tG~---~P~G~~~~--~~s~~T~~LL~e~~Gf~Y~sd~~~dD--~Py~---~~~~----------  196 (297)
T TIGR03212       137 EREHIAEAIRLHTEVTGE---RPLGWYTG--RTSPNTRRLVAEEGGFLYDADSYADD--LPYW---DEVA----------  196 (297)
T ss_pred             HHHHHHHHHHHHHHHhCC---CCceEECC--CCChhHHHHHHHhcCceEeCchhhcC--CCeE---eecC----------
Confidence            999999999999999885   46999975  5566664  476 9999999999864  3444   3311          


Q ss_pred             CCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCC---ceEEeccCccccCchHHHH
Q psy10480        278 PTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK---APYMMPFHTNWFQIKELEQ  354 (435)
Q Consensus       278 p~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nr---ap~~i~~H~~~~~~p~~~~  354 (435)
                          ...+++||+++. ++|+.     +...  ....++++++++|+++||.+|+..+   ..|.|.|||.++|+|+|++
T Consensus       197 ----~~~~l~lP~~~~-~nD~~-----~~~~--~~~~~~~~~~~~~~d~fd~l~~eg~~~~~~~~i~lHp~i~G~p~R~~  264 (297)
T TIGR03212       197 ----GRPQLIVPYTLD-ANDMR-----FATP--QGFNTGEQFFTYLRDAFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIA  264 (297)
T ss_pred             ----CCCeEEEecccc-cCcHH-----HHhc--cCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEecCccccCCHHHHH
Confidence                113677998865 34531     1111  0125789999999999999997532   3689999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEchHHHHHHhcCC
Q psy10480        355 GLHKFLDWAAQKPDVWFVTITQALTWMTNP  384 (435)
Q Consensus       355 al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P  384 (435)
                      +|++||+||++++||||+|.+||++|++.-
T Consensus       265 ~L~~~l~~i~~~~~VW~at~~eIA~~~~~~  294 (297)
T TIGR03212       265 ALQRFLDYVQSHDKVWVARRIDIARHWHET  294 (297)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHh
Confidence            999999999999999999999999998643

This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional Back     alignment and domain information
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB Back     alignment and domain information
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase Back     alignment and domain information
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family Back     alignment and domain information
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase Back     alignment and domain information
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14581 hmsF outer membrane N-deacetylase; Provisional Back     alignment and domain information
>PRK14582 pgaB outer membrane N-deacetylase; Provisional Back     alignment and domain information
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] Back     alignment and domain information
>smart00494 ChtBD2 Chitin-binding domain type 2 Back     alignment and domain information
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein Back     alignment and domain information
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function Back     alignment and domain information
>COG3233 Predicted deacetylase [General function prediction only] Back     alignment and domain information
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised Back     alignment and domain information
>PF15421 Polysacc_deac_3: Putative polysaccharide deacetylase; PDB: 4DWE_A Back     alignment and domain information
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ Back     alignment and domain information
>KOG1958|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 6e-13
3qbu_A326 Putative uncharacterized protein; metallo enzyme, 4e-10
3rxz_A300 Polysaccharide deacetylase; structural genomics, P 9e-07
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3s6o_A321 Polysaccharide deacetylase family protein; ssgcid, 1e-04
3cl6_A308 PUUE allantoinase; URIC acid, nitrogen fixation, h 2e-04
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 Back     alignment and structure
 Score = 62.9 bits (153), Expect = 6e-13
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 19 CPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPT 76
                +G   +  +C  FY C      +  CP GL+++   K+C + ++A C  +  
Sbjct: 9  YSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNK 66
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Length = 326 Back     alignment and structure
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} Length = 300 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} Length = 321 Back     alignment and structure
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
3qbu_A326 Putative uncharacterized protein; metallo enzyme, 100.0
3s6o_A321 Polysaccharide deacetylase family protein; ssgcid, 100.0
3rxz_A300 Polysaccharide deacetylase; structural genomics, P 100.0
3cl6_A308 PUUE allantoinase; URIC acid, nitrogen fixation, h 100.0
2cc0_A195 Acetyl-xylan esterase; hydrolase, carbohydrate est 99.93
2w3z_A311 Putative deacetylase; PGDA, glcnac DE-N-acetylase, 99.93
2y8u_A230 Chitin deacetylase; hydrolase; 1.99A {Emericella n 99.93
1ny1_A240 Probable polysaccharide deacetylase PDAA; structur 99.93
2vyo_A254 ECU11_0510, chitooligosaccharide deacetylase; CE4 99.92
2iw0_A254 Chitin deacetylase; hydrolase, chitin DE-N-acetyla 99.92
2c71_A216 Glycoside hydrolase, family 11\:clostridium cellul 99.92
2j13_A247 Polysaccharide deacetylase; family 4, peptidoglyca 99.92
2c1i_A431 Peptidoglycan glcnac deacetylase; carbohydrate est 99.91
3hft_A257 WBMS, polysaccharide deacetylase involved in O-AN 99.85
3vus_A268 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; 99.75
4hd5_A360 Polysaccharide deacetylase; TIM barrel, hydrolase; 99.65
4f9d_A 618 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; 99.64
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 99.45
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 98.59
1k1x_A 659 4-alpha-glucanotransferase; 2.40A {Thermococcus li 97.47
2b5d_X 528 Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2. 97.08
3n98_A 562 Alpha-amylase, GH57 family; GH57 family member, br 96.71
3p0b_A 540 TT1467 protein; glycoside hydrolase GH57, glycogen 96.56
4dwe_A480 Uncharacterized protein; hypothetical protein, str 96.12
2nly_A245 BH1492 protein, divergent polysaccharide deacetyla 94.15
2qv5_A261 AGR_C_5032P, uncharacterized protein ATU2773; stru 92.11
1o7d_A298 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 89.86
3bvx_A 1045 Alpha-mannosidase 2; family 38 glycoysl hydrolase, 80.81
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Back     alignment and structure
Probab=100.00  E-value=6.3e-45  Score=362.73  Aligned_cols=240  Identities=14%  Similarity=0.172  Sum_probs=203.3

Q ss_pred             CchHHHHHHHhccCCCCCCCCcceeEEEeccc--CCHHHHHHHHHcCCeeeeccccccCCCCCCCHHHHHHHHHHHHHHH
Q psy10480        135 NNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREIL  212 (435)
Q Consensus       135 ~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~--~~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~e~~~~Ei~~~r~~l  212 (435)
                      .++++++++|+++     |  +||||||++..  .++++|++|+++|||||+||++|. .+..++.+++++||.+++++|
T Consensus        74 ~~~~rlL~lL~~~-----~--v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~-~~~~~s~~~~~~ei~~~~~~l  145 (326)
T 3qbu_A           74 VGIPRLLKLFKKY-----H--LPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHE-NPIAMSTKQEEDVLLKSVELI  145 (326)
T ss_dssp             THHHHHHHHHHHT-----T--CCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCC-CGGGSCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHc-----C--CCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCc-ChhhCCHHHHHHHHHHHHHHH
Confidence            4578899999998     7  99999999986  357999999999999999999997 578899999999999999999


Q ss_pred             HHhccCCCCCceEeccCCCCCCccch--hhhcCceEeeecccCCCCCCCCccc------cCCCCCCCccCCCCCCCCCCc
Q psy10480        213 HHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGFIYDSSVSVPALKFPVWPYT------LDHKIPHECKSGTCPTKSFPG  284 (435)
Q Consensus       213 ~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~Gf~YDsS~~~~~~~~p~wPyt------ld~~~~~~c~~~~cp~~~~pg  284 (435)
                      ++++|.   .++|||+|++..+.+++  +++.||.||||+..++ -.|+|+++      +||..++.|+..||+.++.++
T Consensus       146 ~~~~G~---~p~~fr~P~g~~~~~~~~~l~e~G~~ydss~~~~D-~~Py~~~~~~~~~~~d~~~~~~~w~~P~~~g~~~~  221 (326)
T 3qbu_A          146 KDLTGK---APTGYVAPWWEFSNITNELLLKHGFKYDHSLMHND-FTPYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETN  221 (326)
T ss_dssp             HHHHSS---CCCEECCGGGCCSSHHHHHHHTTTCCEECCCCSCS-SSCEEEEECCBCCCCCTTSCGGGTCCCCBCCEEEE
T ss_pred             HHHHCC---CCcEEECCCCCCCHHHHHHHHHcCCEEEeeccCCC-CCCeeeecCCccccccccccchhhcccccCCCCCC
Confidence            999885   46999999999998765  3999999999998642 16788776      788889999999998877789


Q ss_pred             eEEEccccccccccCCCCccCCCcc--CCCCCCHHHHHHHHHHHHHHHHc-CCCceEEeccCccccCchHHHHHHHHHHH
Q psy10480        285 VWEVPLNAHFVESYEGGHCPYLDQC--VLHNHDSDEVLEWLKEDFNKYYT-QNKAPYMMPFHTNWFQIKELEQGLHKFLD  361 (435)
Q Consensus       285 lweiP~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~l~~~fd~~y~-~nrap~~i~~H~~~~~~p~~~~al~~Fl~  361 (435)
                      |||||++.. .+|++..  .+.+.+  .....++++++++|+++||++|+ +++++|+|++|+.+++++.|+++|++||+
T Consensus       222 l~eiP~~~~-~~D~p~~--~f~~~~~~~~g~~~~~~~~~~l~~~Fd~~y~~~~~~~~~i~lH~~~~g~p~r~~~le~fl~  298 (326)
T 3qbu_A          222 LVEIPANWY-LDDLPPM--MFIKKSPNSFGFVSPRDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHEKIIE  298 (326)
T ss_dssp             EEECCCCGG-GBSHHHH--CCCTTCTTCCCCSCHHHHHHHHHHHHHHHHHHCSEEEEEEEECHHHHTSHHHHHHHHHHHH
T ss_pred             eEEEcCccc-cCcchhh--hccccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEECccccCCHHHHHHHHHHHH
Confidence            999999853 3442110  011111  11237899999999999999998 46799999999999999999999999999


Q ss_pred             HHhcCCCEEEEchHHHHHHhcCCcchhh
Q psy10480        362 WAAQKPDVWFVTITQALTWMTNPKSSKE  389 (435)
Q Consensus       362 ~i~~~~dV~fvT~~ei~~w~~~P~~~~~  389 (435)
                      ||++++||||||++||++||+++.|.++
T Consensus       299 ~i~~~~~Vw~~t~~eia~~~~~~~p~~~  326 (326)
T 3qbu_A          299 HINKHEGVRWVTFNEIADDFLKRNPRKK  326 (326)
T ss_dssp             HHTTSTTEEECCHHHHHHHHHHHSCC--
T ss_pred             HHHhCCCEEEEcHHHHHHHHHhhCCCCC
Confidence            9999999999999999999998888653
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6 Back     alignment and structure
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} Back     alignment and structure
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Back     alignment and structure
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Back     alignment and structure
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Back     alignment and structure
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} Back     alignment and structure
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Back     alignment and structure
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Back     alignment and structure
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Back     alignment and structure
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Back     alignment and structure
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Back     alignment and structure
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A Back     alignment and structure
>3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica} Back     alignment and structure
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli} Back     alignment and structure
>4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus} Back     alignment and structure
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A* Back     alignment and structure
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Back     alignment and structure
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Back     alignment and structure
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4 Back     alignment and structure
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A* Back     alignment and structure
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A Back     alignment and structure
>4dwe_A Uncharacterized protein; hypothetical protein, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.01A {Bacteroides ovatus} Back     alignment and structure
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 Back     alignment and structure
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Back     alignment and structure
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 435
d1dqca_73 g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple 4e-10
d1z7aa1301 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pse 6e-06
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 Back     information, alignment and structure

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 19 CPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCG 72
          C D+G      +  +C  FY C      +  CP GL+++   K+C + ++A C 
Sbjct: 12 CLDDG---PNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCT 62
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Length = 301 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
d1z7aa1301 Hypothetical protein PA1517 {Pseudomonas aeruginos 100.0
d2cc0a1192 Acetyl-xylan esterase {Streptomyces lividans [TaxI 99.93
d2iw0a1220 Chitin deacetylase {Bean anthracnose fungus (Colle 99.93
d2c71a1204 Xylanase XynA C-terminal domain {Clostridium therm 99.92
d2c1ia1196 Peptidoglycan GlcNAc deacetylase C-terminal domain 99.92
d1ny1a_235 Probable polysaccharide deacetylase PdaA {Bacillus 99.91
d2j13a1235 Putative polysaccharide deacetylase BA0424 {Bacill 99.91
d1dqca_73 Tachycitin {Horseshoe crab (Tachypleus tridentatus 99.43
d1k1xa3310 4-alpha-glucanotransferase, N-terminal domain {Arc 98.0
d1ufaa2412 Hypothetical protein TT1467, N-terminal domain {Th 96.88
d2b5dx2404 Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 96.54
d2nlya1224 Hypothetical protein BH1492 {Bacillus halodurans [ 92.97
g1o7d.3330 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 86.79
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: PA1517-like
domain: Hypothetical protein PA1517
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.8e-37  Score=301.25  Aligned_cols=233  Identities=16%  Similarity=0.234  Sum_probs=188.7

Q ss_pred             CCCCCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC--CHHHHHHHHHcCCeeeeccccccCCCCC
Q psy10480        118 EDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQD  195 (435)
Q Consensus       118 ~~~Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~--~~~~v~~l~~~GhEIg~Ht~~H~~~l~~  195 (435)
                      ...+.+..+|+-+.++..++++++++|+++     |  ||+||||++...  .+++|++|.++|||||+||++|. ....
T Consensus        61 ~~~~~~~~~s~~~YG~rvG~~Rll~ll~~~-----~--i~aTff~~g~~ae~~P~~v~~i~~~GhEi~~HG~~h~-~~~~  132 (301)
T d1z7aa1          61 QGVRHMSMESLYEYGSRAGVWRLLKLFKRR-----N--VPLTVFAVAMAAQRNPEVIRAMVADGHEICSHGYRWI-DYQY  132 (301)
T ss_dssp             BTSCCHHHHHHHHHHHHTHHHHHHHHHHHT-----T--CCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSS-CCTT
T ss_pred             cccccchhhhhhhhhhhcchHHHHHHHHHh-----C--CCcccchhHHHHHHChHHHHHHHHcCceeecCccccc-cccc
Confidence            445667777888888889999999999998     7  999999999854  46999999999999999999997 4678


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch-hhhcCceEeeecccCCCCCCCCccccCCCCCCCccC
Q psy10480        196 KGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ-FEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKS  274 (435)
Q Consensus       196 ~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~-~~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~  274 (435)
                      ++.++++++|.++.++|++++|.   +++|||+|+++...... ++++||+|+||++.++  .|+|   +...       
T Consensus       133 l~~~~e~~~i~~~~~~l~~~tG~---~p~G~~~p~~~~~~t~~lL~e~Gf~Y~sd~~~dD--~Py~---~~~~-------  197 (301)
T d1z7aa1         133 MDEAQEREHMLEAIRILTELTGQ---RPVGWYTGRTGPNTRRLVMEEGGFLYDSDTYDDD--LPYW---DPAS-------  197 (301)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSS---CCCEECCSSCCTTHHHHHHHHCCCSEECCCCCCS--SCEE---CTTC-------
T ss_pred             CCHHHHHHHHHHHHHHHHHhccC---CcccccCCCCCCccHHHHHHhcCCEEECCCCCCC--Cccc---eecc-------
Confidence            99999999999999999998874   56999999987443332 4999999999999764  4554   2211       


Q ss_pred             CCCCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcC-CC--ceEEeccCccccCchH
Q psy10480        275 GTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQ-NK--APYMMPFHTNWFQIKE  351 (435)
Q Consensus       275 ~~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~-nr--ap~~i~~H~~~~~~p~  351 (435)
                           ....++++||++.. ++|..     ++.  .....+++++++.++++|+..|+. .+  ..|+|.|||..+|+|+
T Consensus       198 -----~~~~~~l~iP~~~~-~~D~~-----~~~--~~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lHP~i~G~P~  264 (301)
T d1z7aa1         198 -----TAEKPHLVIPYTLD-TNDMR-----FTQ--VQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPA  264 (301)
T ss_dssp             -----CSSSCCEECCCCSS-SBGGG-----GGS--TTCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEETTTTTSHH
T ss_pred             -----CCCCCeEEeccccc-cchhh-----hhh--cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeeCCcccCCHH
Confidence                 12336999998864 34431     111  112367889999999999999973 23  3588899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEchHHHHHHhcCCcc
Q psy10480        352 LEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKS  386 (435)
Q Consensus       352 ~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P~~  386 (435)
                      |+.+|++||+||++++||||+|.+||++|++...|
T Consensus       265 Ri~~Le~~l~~i~~~~dVW~at~~eIA~~~~~~~P  299 (301)
T d1z7aa1         265 RMAALERFIQYAQSHDKVWFARREDIARHWHREHP  299 (301)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHcCCCEEEcCHHHHHHHHHHHCc
Confidence            99999999999999999999999999998864443
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Back     information, alignment and structure
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Back     information, alignment and structure
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure