Psyllid ID: psy10488

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
Protein Sequence
MNHNHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHE
Secondary Structure (PSIPRED)
ccccEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHEEcccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEccccccccccEEEccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccHHHHHEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccEEEEEEEEEEEccccccccccccHHHccccHHHccccccc
Coil and Loop (DISEMBL)
mnhnhivdgprpaqKDILAIRAYILLFLKQLMmlgpgvkedELQSILNYLTTVQEDENLHDVLQTLISLmcdhpaclvpafdmkqGVRTVFKLLTSQSQLIRLQALKLLGFFLsrsthkrkydvmsphNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQilytrhpepeshyrlenpMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAeknmssggilRQCLRLVCTCAVRNCLECKERHRAllnspaynnptknaHLQSLIRgaqtspknandvpggptsssspvkdLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKyrdilepppmlpralsppltqnnnqghegkWVYFISVLMVSKyrdilepppmlpralsppltqnnnqghe
Flexible Loop (DISEMBL)
mnhnhivdgprpaqkDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSthkrkydvmSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHRALlnspaynnptKNAHLQSLIRGAQTSPKNANDVpggptsssspvkDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMlpralsppltqnnnqghe
Low Complexity Region (SEG)
MNHNHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTssssPVKDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEpppmlpralspplTQNNNQGHEGKWVYFISVLMVSKYRDILEpppmlpralspplTQNNNQGHE
Disordered region (IsUnstruct)
**************KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHRALLN***********************************************LQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDIL**********************EGKWVYFISVLMVSKYRDIL***********************
Disordered Region (DISOPRED)
MNHNHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTH******MSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILY***P**ESHYRLENPMILKVVATLIRQSKQ***LLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLE*************************************************PVKDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDI*******************************SVLMVSKYRDILEPPPMLPRALSP***********
Disordered Region (DISEMBL)
MNHNHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQT******************VKDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPPL*********
Disordered Region (DISPRO)
MNHNHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERH*****************************KNANDVPGG*TSSSSPVKDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPM*****SPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPPL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHNHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	462	2.2.26 [Sep-21-2011]
Q9W4E2	3578	Neurobeachin OS=Drosophil	yes	N/A	0.497	0.064	0.841	1e-109
Q8NFP9	2946	Neurobeachin OS=Homo sapi	yes	N/A	0.480	0.075	0.577	8e-73
Q9EPN1	2936	Neurobeachin OS=Mus muscu	yes	N/A	0.471	0.074	0.577	9e-73
P50851	2863	Lipopolysaccharide-respon	no	N/A	0.474	0.076	0.541	6e-70
Q9ESE1	2856	Lipopolysaccharide-respon	no	N/A	0.476	0.077	0.546	8e-70
Q19317	2507	Putative neurobeachin hom	yes	N/A	0.5	0.092	0.451	5e-55
Q9DDD5	793	Neurobeachin (Fragment) O	no	N/A	0.378	0.220	0.594	9e-54
A8XSV3	2531	Putative neurobeachin hom	N/A	N/A	0.5	0.091	0.426	1e-52

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 217/234 (92%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRPAQKDILAIRAYILLFLKQL+M+G GVKEDELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 636 LDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQML 695

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD+K GVR++FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 696 ISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 755

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E SLS  TYNVLYEI+TEHISQQILYTRHPEPESHYRLENPMILK
Sbjct: 756 PHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILK 815

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E L++VKKLFL D+TLLCN+NRENRRTVLQMSVWQ   I +A
Sbjct: 816 VVATLIRQSKQTESLIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMA 869

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways.
Drosophila melanogaster (taxid: 7227)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score =  274 bits (701), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/227 (57%), Positives = 183/227 (80%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP+QK+I+++RA++LLFLKQL++   GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct: 667 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 726

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL    HKRK ++M 
Sbjct: 727 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 786

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
            H+L+TLL ERL+ H ++++  TYN LYEILTE +  Q+++  HPEP+S  +++NPMILK
Sbjct: 787 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 846

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
           VVATL++ S  S  L+EV++LFLSD+  L +N+RENRR +LQ SVWQ
Sbjct: 847 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 893

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score =  274 bits (701), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 131/227 (57%), Positives = 183/227 (80%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP+QK+I+++RA++LLFLKQL++   GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct: 657 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 716

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL    HKRK ++M 
Sbjct: 717 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 776

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
            H+L+TLL ERL+ H ++++  TYN LYEILTE +  Q+++  HPEP+S  +++NPMILK
Sbjct: 777 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 836

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
           VVATL++ S  S  L+EV++LFLSD+  L +N+RENRR +LQ SVWQ
Sbjct: 837 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 883

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4

 Score =  265 bits (677), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 176/227 (77%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QK++L++RA++L+F+KQL+M   GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct: 641 LDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 700

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ++LM +HP  ++PAFD + G+R ++KLL S+S+ IR+QALK +G+FL     KRK +VM 
Sbjct: 701 VALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVML 760

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
            H L++LLAERL+   + ++  TYNVL+EIL E I  Q+++ +HP+P+S  +++NP ILK
Sbjct: 761 GHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILK 820

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
           V+ATL+R S Q    +EV++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct: 821 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 867

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Homo sapiens (taxid: 9606)

>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1

 Score =  265 bits (676), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/227 (54%), Positives = 175/227 (77%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QK+IL++RA++L+F+KQL+M   GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct: 641 LDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 700

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ++LM +HP  ++PAFD + G+R ++KLL S+S+ IR+QALK LG+FL     KRK +VM 
Sbjct: 701 VALMAEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVML 760

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
            H L++LLAERL+   + ++   YNVL+EIL E I  Q+++ +HP+P+S  +++NP ILK
Sbjct: 761 GHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVIHKQHPDPDSTVKIQNPQILK 820

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
           V+ATL+R S Q    +EV++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct: 821 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 867

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Mus musculus (taxid: 10090)

>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3

 Score =  215 bits (548), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 6/237 (2%)

Query: 13  AQKDILAIRAYILLFLKQLMMLGPG------VKEDELQSILNYLTTVQEDENLHDVLQTL 66
           A  DI+AIR+ IL F+ ++++   G      V++ E+ ++LN L TV+ED+NL+DVL  +
Sbjct: 744 ATADIVAIRSSILTFINRIIIASAGPEEEERVRDQEVHTLLNLLATVREDDNLYDVLALV 803

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             L+ +HPA ++PA D  + +  +F LL + ++LIR+ ALK+LGFFLSRST KRK + M 
Sbjct: 804 TRLLAEHPAIMIPAIDKNKALGIIFNLLAAPNELIRIPALKILGFFLSRSTLKRKTESMG 863

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
             NL++L+ ERLL H+  LS  TYNVL EIL E ++    Y  H   +  ++ ENP +LK
Sbjct: 864 NQNLFSLIGERLLSHKKVLSLPTYNVLLEILVEQMTPTFTYACHQPAQPEWKFENPHLLK 923

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSF 243
           V+A +I Q ++SE ++++KK FL D+  LC  ++ENRRT+LQMSVWQ   I +A  F
Sbjct: 924 VIAHVISQCEESENIVQIKKCFLIDIINLCRESKENRRTILQMSVWQDWLIGLAYVF 980

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9DDD5|NBEA_CHICK Neurobeachin (Fragment) OS=Gallus gallus GN=NBEA PE=2 SV=1

 Score =  211 bits (537), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 132/180 (73%), Gaps = 5/180 (2%)

Query: 229 MSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCA 288
           + V QGM  E AV+FL RL+ M DVLVFASSLNF+E+EAEKNMSSGG++RQCLRLVC  A
Sbjct: 518 IEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVA 577

Query: 289 VRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDL 348
           VRNCLEC++R R  +N  +  +      LQ +   A T     N VPG    + SP+KD 
Sbjct: 578 VRNCLECRQRQRERVNKTSLISSKAQDALQGVTASAATKTPLEN-VPG----NLSPIKDP 632

Query: 349 HKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALS 408
            +LLQD+D+NRLRA ++RD+++SKQAQFL+LAVVYFISVLMVSKYRDILEP     R+ S
Sbjct: 633 DRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETARSGS 692

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Gallus gallus (taxid: 9031)

>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 158/237 (66%), Gaps = 6/237 (2%)

Query: 13  AQKDILAIRAYILLFLKQLMMLGPG------VKEDELQSILNYLTTVQEDENLHDVLQTL 66
           A  +I++IR+ IL F+ ++++           ++ E+ ++LN L TV+ED+NL+DVL  +
Sbjct: 751 ATAEIVSIRSAILTFINRIIISSNSPDEEEKARDQEIHTLLNLLATVREDDNLYDVLALV 810

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             L+ +HPA ++PA D  + +  +F LL + ++LIR+ ALK+LGFFLSRST KRK + M 
Sbjct: 811 TRLLAEHPAIMIPAIDKNKALGIIFNLLAAPNELIRIPALKILGFFLSRSTLKRKTESMG 870

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
             NL++L+ ERLL H+ ++S  TYNVL E+L E ++    Y  H   +  ++ ENP +LK
Sbjct: 871 SQNLFSLIGERLLSHKRTISLPTYNVLLEVLVEQMTPTFTYAAHQPAQPDWKFENPHLLK 930

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSF 243
           V+A +I Q +++E L+++KK FL D+  LC  ++ENRRT+LQMSVWQ   I +A  F
Sbjct: 931 VIAHVISQCEETESLVQIKKCFLIDIINLCRESKENRRTILQMSVWQDWLIGLAYVF 987

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
350417191	3204	PREDICTED: neurobeachin-like [Bombus imp	0.497	0.071	0.841	1e-111
340715018	3204	PREDICTED: neurobeachin-like [Bombus ter	0.497	0.071	0.841	1e-111
380020287	2983	PREDICTED: neurobeachin-like [Apis flore	0.497	0.077	0.841	1e-110
307205111	2412	Neurobeachin [Harpegnathos saltator]	0.478	0.091	0.841	1e-110
332025329	2377	Neurobeachin [Acromyrmex echinatior]	0.493	0.095	0.841	1e-110
328788933	2942	PREDICTED: neurobeachin-like, partial [A	0.497	0.078	0.841	1e-110
347963011	3676	AGAP000017-PA [Anopheles gambiae str. PE	0.5	0.062	0.837	1e-110
157137403	1103	neurobeachin [Aedes aegypti] gi|10888090	0.5	0.209	0.850	1e-108
195162083	2020	GL14282 [Drosophila persimilis] gi|19410	0.471	0.107	0.841	1e-108
195396793	3654	GJ16846 [Drosophila virilis] gi|19414678	0.493	0.062	0.846	1e-108

>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 215/234 (91%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QKDIL IR+YILLFLKQL+M+G GVK+DELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 645 LDGPRPQQKDILTIRSYILLFLKQLIMIGNGVKDDELQSILNYLTTIHEDENLHDVLQML 704

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD KQGVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 705 ISLMSEHPSSMVPAFDAKQGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 764

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E +LS  TYNVLYEI+TEHISQQILY RHPEPESHYRLENPMILK
Sbjct: 765 PHNLYTLLAERLLLNEETLSLPTYNVLYEIMTEHISQQILYARHPEPESHYRLENPMILK 824

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 825 VVATLIRQSKQTEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 878

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715018|ref|XP_003396018.1| PREDICTED: neurobeachin-like [Bombus terrestris]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 215/234 (91%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QKDIL IR+YILLFLKQL+M+G GVK+DELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 645 LDGPRPQQKDILTIRSYILLFLKQLIMIGNGVKDDELQSILNYLTTIHEDENLHDVLQML 704

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD KQGVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 705 ISLMSEHPSSMVPAFDAKQGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 764

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E +LS  TYNVLYEI+TEHISQQILY RHPEPESHYRLENPMILK
Sbjct: 765 PHNLYTLLAERLLLNEETLSLPTYNVLYEIMTEHISQQILYARHPEPESHYRLENPMILK 824

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 825 VVATLIRQSKQTEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 878

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020287|ref|XP_003694021.1| PREDICTED: neurobeachin-like [Apis florea]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 215/234 (91%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QKDIL IR+YILLFLKQL+M+G GVK+DELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 350 LDGPRPQQKDILTIRSYILLFLKQLIMIGNGVKDDELQSILNYLTTIHEDENLHDVLQML 409

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD KQGVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 410 ISLMSEHPSSMVPAFDAKQGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 469

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E +LS  TYNVLYEI+TEHISQQILY RHPEPESHYRLENPMILK
Sbjct: 470 PHNLYTLLAERLLLNEETLSLPTYNVLYEIMTEHISQQILYARHPEPESHYRLENPMILK 529

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 530 VVATLIRQSKQTEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 583

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205111|gb|EFN83576.1| Neurobeachin [Harpegnathos saltator]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 215/234 (91%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QKDIL IR+YILLFLKQL+M+G GVK+DELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 487 LDGPRPQQKDILTIRSYILLFLKQLIMIGNGVKDDELQSILNYLTTMHEDENLHDVLQML 546

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD KQGVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 547 ISLMSEHPSSMVPAFDAKQGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 606

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E +LS  TYNVLYEI+TEHISQQILY RHPEPESHYRLENPMILK
Sbjct: 607 PHNLYTLLAERLLLNEETLSLPTYNVLYEIMTEHISQQILYARHPEPESHYRLENPMILK 666

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 667 VVATLIRQSKQTEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 720

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025329|gb|EGI65497.1| Neurobeachin [Acromyrmex echinatior]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 215/234 (91%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QKDIL IR+YILLFLKQL+M+G GVK+DELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 493 LDGPRPQQKDILTIRSYILLFLKQLIMIGNGVKDDELQSILNYLTTMHEDENLHDVLQML 552

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD KQGVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 553 ISLMSEHPSSMVPAFDAKQGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 612

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E +LS  TYNVLYEI+TEHISQQILY RHPEPESHYRLENPMILK
Sbjct: 613 PHNLYTLLAERLLLNEETLSLPTYNVLYEIMTEHISQQILYARHPEPESHYRLENPMILK 672

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 673 VVATLIRQSKQTEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 726

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788933|ref|XP_003251209.1| PREDICTED: neurobeachin-like, partial [Apis mellifera]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 215/234 (91%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRP QKDIL IR+YILLFLKQL+M+G GVK+DELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 575 LDGPRPQQKDILTIRSYILLFLKQLIMIGNGVKDDELQSILNYLTTIHEDENLHDVLQML 634

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD KQGVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 635 ISLMSEHPSSMVPAFDAKQGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 694

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E +LS  TYNVLYEI+TEHISQQILY RHPEPESHYRLENPMILK
Sbjct: 695 PHNLYTLLAERLLLNEETLSLPTYNVLYEIMTEHISQQILYARHPEPESHYRLENPMILK 754

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 755 VVATLIRQSKQTEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 808

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963011|ref|XP_311142.5| AGAP000017-PA [Anopheles gambiae str. PEST] gi|333467401|gb|EAA06488.5| AGAP000017-PA [Anopheles gambiae str. PEST]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/234 (83%), Positives = 215/234 (91%)

Query: 7    VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
            +DGPRPAQKDILAIRAYILLFLKQL+M+G G K+DELQSILNYL T+ EDENLHDVLQ L
Sbjct: 844  LDGPRPAQKDILAIRAYILLFLKQLIMIGNGAKDDELQSILNYLMTMHEDENLHDVLQML 903

Query: 67   ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
            ISLM +HP+ +VPAFD+K GVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 904  ISLMSEHPSSMVPAFDVKHGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 963

Query: 127  PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
            PHNLYTLLAERLL +E S+S  TYNVLYEI+TEHISQQILY +HPEPESHYRLENPMILK
Sbjct: 964  PHNLYTLLAERLLLYEESVSLPTYNVLYEIMTEHISQQILYAKHPEPESHYRLENPMILK 1023

Query: 187  VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
            VVATLIRQSKQSE L+EVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 1024 VVATLIRQSKQSEQLIEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 1077

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137403|ref|XP_001657059.1| neurobeachin [Aedes aegypti] gi|108880900|gb|EAT45125.1| AAEL003609-PA, partial [Aedes aegypti]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/234 (85%), Positives = 216/234 (92%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRPAQKDILAIRAYILLFLKQL+M+G GVK+DELQSILNYL T+ EDENLHDVLQ L
Sbjct: 74  LDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKDDELQSILNYLMTMHEDENLHDVLQML 133

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD+K GVRT+FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 134 ISLMSEHPSSMVPAFDVKHGVRTIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 193

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E SLS  TYNVLYEI+TEHISQQILY +HPEPESHYRLENPMILK
Sbjct: 194 PHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYAKHPEPESHYRLENPMILK 253

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQSE LLEVKKLFLSD+TLLCNNNRENRRTVLQMSVWQ   I +A
Sbjct: 254 VVATLIRQSKQSEQLLEVKKLFLSDMTLLCNNNRENRRTVLQMSVWQEWLIAMA 307

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195162083|ref|XP_002021885.1| GL14282 [Drosophila persimilis] gi|194103783|gb|EDW25826.1| GL14282 [Drosophila persimilis]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/234 (84%), Positives = 217/234 (92%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRPAQKDILAIRAYILLFLKQL+M+G GVKEDELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 226 LDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQML 285

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD+K GVR++FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 286 ISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 345

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E SLS  TYNVLYEI+TEHISQQILYTRHPEPESHYRLENPMILK
Sbjct: 346 PHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILK 405

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E L++VKKLFL D+TLLCN+NRENRRTVLQMSVWQ   I +A
Sbjct: 406 VVATLIRQSKQTESLIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMA 459

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396793|ref|XP_002057013.1| GJ16846 [Drosophila virilis] gi|194146780|gb|EDW62499.1| GJ16846 [Drosophila virilis]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/234 (84%), Positives = 217/234 (92%)

Query: 7   VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
           +DGPRPAQKDILAIRAYILLFLKQL+M+G GVKEDELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 694 LDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQML 753

Query: 67  ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
           ISLM +HP+ +VPAFD+K GVR++FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 754 ISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 813

Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
           PHNLYTLLAERLL +E SLS  TYNVLYEI+TEHISQQILYTRHPEPESHYRLENPMILK
Sbjct: 814 PHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILK 873

Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
           VVATLIRQSKQ+E L+EVKKLFL D+TLLCN+NRENRRTVLQMSVWQ   I +A
Sbjct: 874 VVATLIRQSKQTESLIEVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMA 927

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
FB|FBgn0086911	3578	rg "rugose" [Drosophila melano	0.506	0.065	0.841	2.5e-166
UNIPROTKB|F1P3D0	2855	NBEA "Neurobeachin" [Gallus ga	0.491	0.079	0.577	3.2e-123
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.491	0.077	0.577	2e-122
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.491	0.077	0.577	2.5e-122
UNIPROTKB|F1MF64	2809	NBEA "Uncharacterized protein"	0.489	0.080	0.577	4.9e-121
UNIPROTKB|E1C6E6	2850	LRBA "Uncharacterized protein"	0.493	0.08	0.539	2e-112
RGD|1311428	2709	Lrba "LPS-responsive vesicle t	0.491	0.083	0.546	5.2e-111
UNIPROTKB|P50851	2863	LRBA "Lipopolysaccharide-respo	0.491	0.079	0.541	2.1e-110
UNIPROTKB|E1BND6	2786	Bt.111067 "Uncharacterized pro	0.489	0.081	0.539	1.3e-109
MGI|MGI:1933162	2856	Lrba "LPS-responsive beige-lik	0.491	0.079	0.546	1e-104

FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)]

 Score = 1009 (360.2 bits), Expect = 2.5e-166, Sum P(3) = 2.5e-166
 Identities = 197/234 (84%), Positives = 217/234 (92%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRPAQKDILAIRAYILLFLKQL+M+G GVKEDELQSILNYLTT+ EDENLHDVLQ L
Sbjct:   636 LDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQML 695

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ISLM +HP+ +VPAFD+K GVR++FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct:   696 ISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 755

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
             PHNLYTLLAERLL +E SLS  TYNVLYEI+TEHISQQILYTRHPEPESHYRLENPMILK
Sbjct:   756 PHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILK 815

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
             VVATLIRQSKQ+E L++VKKLFL D+TLLCN+NRENRRTVLQMSVWQ   I +A
Sbjct:   816 VVATLIRQSKQTESLIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMA 869

GO:0016021 "integral to membrane" evidence=IDA

GO:0008104 "protein localization" evidence=NAS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051018 "protein kinase A binding" evidence=NAS;IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016319 "mushroom body development" evidence=IMP

UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)]

 Score = 717 (257.5 bits), Expect = 3.2e-123, Sum P(3) = 3.2e-123
 Identities = 131/227 (57%), Positives = 183/227 (80%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRP+QK+I+++RA++LLFLKQL++   GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct:   569 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 628

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL    HKRK ++M 
Sbjct:   629 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 688

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
              H+L+TLL ERL+ H ++++  TYN LYEILTE +  Q+++  HPEP+S  +++NPMILK
Sbjct:   689 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 748

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             VVATL++ S  S  L+EV++LFLSD+  L +N+RENRR +LQ SVWQ
Sbjct:   749 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 795

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 717 (257.5 bits), Expect = 2.0e-122, Sum P(3) = 2.0e-122
 Identities = 131/227 (57%), Positives = 183/227 (80%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRP+QK+I+++RA++LLFLKQL++   GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct:   667 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 726

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL    HKRK ++M 
Sbjct:   727 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 786

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
              H+L+TLL ERL+ H ++++  TYN LYEILTE +  Q+++  HPEP+S  +++NPMILK
Sbjct:   787 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 846

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             VVATL++ S  S  L+EV++LFLSD+  L +N+RENRR +LQ SVWQ
Sbjct:   847 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 893

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 717 (257.5 bits), Expect = 2.5e-122, Sum P(3) = 2.5e-122
 Identities = 131/227 (57%), Positives = 183/227 (80%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRP+QK+I+++RA++LLFLKQL++   GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct:   657 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 716

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL    HKRK ++M 
Sbjct:   717 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 776

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
              H+L+TLL ERL+ H ++++  TYN LYEILTE +  Q+++  HPEP+S  +++NPMILK
Sbjct:   777 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 836

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             VVATL++ S  S  L+EV++LFLSD+  L +N+RENRR +LQ SVWQ
Sbjct:   837 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 883

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|F1MF64 NBEA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 707 (253.9 bits), Expect = 4.9e-121, Sum P(3) = 4.9e-121
 Identities = 131/227 (57%), Positives = 182/227 (80%)

Query:     8 DGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLI 67
             DGPRP+QK+I+++RA++LLFLKQL++   GVKEDELQSILNYL T+ EDEN+HDVLQ L+
Sbjct:   532 DGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLLV 591

Query:    68 SLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSP 127
             +LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL    HKRK ++M  
Sbjct:   592 ALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMHT 651

Query:   128 HNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKV 187
             H+L+TLL ERL+ H ++++  TYN LYEILTE +  Q+++  HPEP+S  +++NPMILKV
Sbjct:   652 HSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILKV 711

Query:   188 VATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRT-VLQMSVWQ 233
             VATL++ S  S  L+EV++LFLSD+  L +N+RENRR  +LQ SVWQ
Sbjct:   712 VATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRRCLLQCSVWQ 758

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 679 (244.1 bits), Expect = 2.0e-112, Sum P(2) = 2.0e-112
 Identities = 123/228 (53%), Positives = 180/228 (78%)

Query:     6 IVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQT 65
             IVDGPRP QK+ L++RA++L+F+KQL+M   G+KE+ELQ+ILNYL T+ ED+NL DVLQ 
Sbjct:   642 IVDGPRPTQKETLSLRAFLLMFIKQLVMKDYGIKEEELQAILNYLLTIHEDDNLMDVLQL 701

Query:    66 LISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVM 125
             L++LM +HP+ ++PAFD + G++ V+KLL S+S+ IR+QALK++G+FL     KRK ++M
Sbjct:   702 LVALMSEHPSSMIPAFDQRNGLQVVYKLLASKSEGIRVQALKVMGYFLKHLAPKRKAEIM 761

Query:   126 SPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMIL 185
               H L++LLAERL+ H + ++  TYNVL+EILTE I  Q+++ +HP+P+S  +++NP IL
Sbjct:   762 LGHGLFSLLAERLMLHTNLITMTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQIL 821

Query:   186 KVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             KV+A L+R S Q+   LE+++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct:   822 KVIAILLRNSPQTPETLEIRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 869

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

RGD|1311428 Lrba "LPS-responsive vesicle trafficking, beach and anchor containing" [Rattus norvegicus (taxid:10116)]

 Score = 661 (237.7 bits), Expect = 5.2e-111, Sum P(2) = 5.2e-111
 Identities = 124/227 (54%), Positives = 174/227 (76%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRP QK+IL++RA++L+F+KQL+M   GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct:   493 LDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 552

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ++LM +HP  + PAFD + G+R ++KLL S+S+ IR+QALK LG+FL     KRK +VM 
Sbjct:   553 VALMAEHPNSMTPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVML 612

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
              H L++LLAERL+   + ++   YNVL+EIL E I  Q+++ +HP+P+S  +++NP ILK
Sbjct:   613 GHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVIHKQHPDPDSTVKIQNPQILK 672

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             V+ATL+R S Q    +EV++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct:   673 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 719

GO:0005764 "lysosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)]

 Score = 666 (239.5 bits), Expect = 2.1e-110, Sum P(2) = 2.1e-110
 Identities = 123/227 (54%), Positives = 176/227 (77%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRP QK++L++RA++L+F+KQL+M   GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct:   641 LDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 700

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ++LM +HP  ++PAFD + G+R ++KLL S+S+ IR+QALK +G+FL     KRK +VM 
Sbjct:   701 VALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVML 760

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
              H L++LLAERL+   + ++  TYNVL+EIL E I  Q+++ +HP+P+S  +++NP ILK
Sbjct:   761 GHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILK 820

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             V+ATL+R S Q    +EV++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct:   821 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 867

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 656 (236.0 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
 Identities = 122/226 (53%), Positives = 173/226 (76%)

Query:     8 DGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLI 67
             DGPRP QK++ ++RA++L+F+KQL+M   GVKEDELQ+ILNYL T+ ED+NL DVLQ L+
Sbjct:   571 DGPRPNQKEMFSLRAFLLMFIKQLVMKDNGVKEDELQAILNYLLTMHEDDNLMDVLQLLV 630

Query:    68 SLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSP 127
             +LM +HP  ++PAFD + G+R ++KLL S S+ IR+QALK +G+FL     KRK +VM  
Sbjct:   631 ALMSEHPNSMIPAFDQRNGLRVIYKLLASTSEGIRVQALKAMGYFLKHLAPKRKAEVMLG 690

Query:   128 HNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKV 187
             H L++LLAERL+   + ++  TYNVL+EIL E I  Q+++ +HP+P+S  +++NP ILKV
Sbjct:   691 HGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKV 750

Query:   188 VATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             +ATL+R S Q    +EV++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct:   751 IATLLRNSVQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 796

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)]

 Score = 664 (238.8 bits), Expect = 1.0e-104, Sum P(2) = 1.0e-104
 Identities = 124/227 (54%), Positives = 175/227 (77%)

Query:     7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
             +DGPRP QK+IL++RA++L+F+KQL+M   GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct:   641 LDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 700

Query:    67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
             ++LM +HP  ++PAFD + G+R ++KLL S+S+ IR+QALK LG+FL     KRK +VM 
Sbjct:   701 VALMAEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVML 760

Query:   127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
              H L++LLAERL+   + ++   YNVL+EIL E I  Q+++ +HP+P+S  +++NP ILK
Sbjct:   761 GHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVIHKQHPDPDSTVKIQNPQILK 820

Query:   187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
             V+ATL+R S Q    +EV++ FLSD+  L NN+RENRR++LQ SVWQ
Sbjct:   821 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 867

GO:0005764 "lysosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0008104 "protein localization" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016197 "endosomal transport" evidence=TAS

GO:0051018 "protein kinase A binding" evidence=ISA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W4E2	NBEA_DROME	No assigned EC number	0.8418	0.4978	0.0642	yes	N/A
Q8NFP9	NBEA_HUMAN	No assigned EC number	0.5770	0.4805	0.0753	yes	N/A
Q9EPN1	NBEA_MOUSE	No assigned EC number	0.5770	0.4718	0.0742	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	462
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.34
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	92.73
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.92
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	87.16
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	84.88
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	83.58
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	81.78
PF07637	64	PSD5: Protein of unknown function (DUF1595); Inter	80.16

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.34  E-value=0.027  Score=56.02  Aligned_cols=94  Identities=24%  Similarity=0.374  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhh-cccccHHHHHHHHHHHHhcCCCcchhhhh----hcC--CeeEeeecccCCCchhHHhHHHHHHHHHh
Q psy10488         42 ELQSILNYLTTV-QEDENLHDVLQTLISLMCDHPACLVPAFD----MKQ--GVRTVFKLLTSQSQLIRLQALKLLGFFLS  114 (462)
Q Consensus        42 El~AIlnfl~t~-~Ed~nl~DVL~mli~LLsE~P~~~~p~fd----~~~--Gi~iffkLL~s~sE~IRl~ALKlLG~fL~  114 (462)
                      -.+.+++.+.++ +.++.+.=||.++-+++.+.|. ..+.|-    ...  -...|+++|.+.+..|...|.++|+.+++
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            367888999999 9999999999999999999995 443333    223  37899999999999999999999999999


Q ss_pred             cCCccccc---cccCcchhHHHHHHHH
Q psy10488        115 RSTHKRKY---DVMSPHNLYTLLAERL  138 (462)
Q Consensus       115 ~~~~kRK~---~~m~~~~lfslLseRL  138 (462)
                      ..+.....   +.+  ..+|..|++.+
T Consensus       135 ~~~~~~~~~~~~~l--~~ll~~L~~~l  159 (312)
T PF03224_consen  135 QGPKRSEKLVKEAL--PKLLQWLSSQL  159 (312)
T ss_dssp             STTT--HHHHHHHH--HHHHHHHH-TT
T ss_pred             cCCccccchHHHHH--HHHHHHHHHhh
Confidence            88877665   333  55666666633

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=92.73  E-value=0.26  Score=52.66  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhh----cCCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488         40 EDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDM----KQGVRTVFKLLTSQSQLIRLQALKLLGFFLSR  115 (462)
Q Consensus        40 ~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~----~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~  115 (462)
                      +.=.++++|.+.+++.++.+.=||.|+-+++.+.|+...-|.|.    ..-...|+++|.+++..|-..|.++|+.+.+.
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            45578999999999999999999999999999998866656654    56788999999999999999999999999987


Q ss_pred             CCccccccccCcchhHHHHHHHHh
Q psy10488        116 STHKRKYDVMSPHNLYTLLAERLL  139 (462)
Q Consensus       116 ~~~kRK~~~m~~~~lfslLseRL~  139 (462)
                      .+......  .-..+|+.+.+.|.
T Consensus       132 ~~~~~~~~--~l~~~~~~l~~~l~  153 (429)
T cd00256         132 GLAKMEGS--DLDYYFNWLKEQLN  153 (429)
T ss_pred             Cccccchh--HHHHHHHHHHHHhh
Confidence            76422211  12224445555554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.92  E-value=0.35  Score=43.69  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488         41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSR  115 (462)
Q Consensus        41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~  115 (462)
                      .=++.|+++|.+++|..++.=+.+=|=..+..+|.+ .-.+++.||=..+.+||..+++.||-.||+.+.+++..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            347788889988888887765555555556667774 45557889999999999999999999999999999864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=87.16  E-value=0.98  Score=36.47  Aligned_cols=94  Identities=16%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488         43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY  122 (462)
Q Consensus        43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~  122 (462)
                      ++.++.++..-+  ..+...--..+.-++.+.......+-..+|+..+.++|...+..+|..|+..|+.+....+.  ..
T Consensus         9 i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~   84 (120)
T cd00020           9 LPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NK   84 (120)
T ss_pred             hHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HH
Confidence            455666664332  33333334445556665444555555679999999999999999999999999999865442  22


Q ss_pred             cccCcchhHHHHHHHHhc
Q psy10488        123 DVMSPHNLYTLLAERLLQ  140 (462)
Q Consensus       123 ~~m~~~~lfslLseRL~~  140 (462)
                      +.+...++-..+.+.|-.
T Consensus        85 ~~~~~~g~l~~l~~~l~~  102 (120)
T cd00020          85 LIVLEAGGVPKLVNLLDS  102 (120)
T ss_pred             HHHHHCCChHHHHHHHhc
Confidence            333444566666665543

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=84.88  E-value=5.9  Score=39.56  Aligned_cols=167  Identities=15%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcC
Q psy10488         37 GVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRS  116 (462)
Q Consensus        37 ~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~  116 (462)
                      -...+|++.++.+|...+|..--+-+ -+.+.-.+.+| .-..+.-..||+.++.++|..++..+|..||+.|.-+=  .
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~a-l~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls--~   83 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKA-LIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS--V   83 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHH-HHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC--C
Confidence            46789999999999988776544443 33444344443 22344446699999999999999999999999998653  2


Q ss_pred             CccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCc
Q psy10488        117 THKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSK  196 (462)
Q Consensus       117 ~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~  196 (462)
                      ..+.+ ..++.  ...-+-+....++-. |...-+.|--  +.++|-.-.+        +.-+  ...+..++++|....
T Consensus        84 ~~en~-~~Ik~--~i~~Vc~~~~s~~ln-s~~Q~agLrl--L~nLtv~~~~--------~~~l--~~~i~~ll~LL~~G~  147 (254)
T PF04826_consen   84 NDENQ-EQIKM--YIPQVCEETVSSPLN-SEVQLAGLRL--LTNLTVTNDY--------HHML--ANYIPDLLSLLSSGS  147 (254)
T ss_pred             ChhhH-HHHHH--HHHHHHHHHhcCCCC-CHHHHHHHHH--HHccCCCcch--------hhhH--HhhHHHHHHHHHcCC
Confidence            22222 22332  133333333333311 1111233332  3344432211        1111  113444567776543


Q ss_pred             chhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488        197 QSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM  229 (462)
Q Consensus       197 ~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~  229 (462)
                      ..     +|..-|. ++.-++.||++.+.+++.
T Consensus       148 ~~-----~k~~vLk-~L~nLS~np~~~~~Ll~~  174 (254)
T PF04826_consen  148 EK-----TKVQVLK-VLVNLSENPDMTRELLSA  174 (254)
T ss_pred             hH-----HHHHHHH-HHHHhccCHHHHHHHHhc
Confidence            32     3444455 677789999999999865

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=83.58  E-value=8.5  Score=39.24  Aligned_cols=162  Identities=19%  Similarity=0.241  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHh-cCCCcchhhhhhcC-CeeEeeecccCC
Q psy10488         20 IRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMC-DHPACLVPAFDMKQ-GVRTVFKLLTSQ   97 (462)
Q Consensus        20 IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLs-E~P~~~~p~fd~~~-Gi~iffkLL~s~   97 (462)
                      .+.+...+++.++..       .++-|.+.|...+.. -..=+|.|+.++.+ ..++..-.+++..+ ...++-+|+..+
T Consensus        42 ~~~~g~~l~~~iL~~-------~~k~lyr~L~~~~~~-~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~  113 (330)
T PF11707_consen   42 FQSYGLELIRSILQN-------HLKLLYRSLSSSKPS-LTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPR  113 (330)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHhCcCcHH-HHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccc
Confidence            344444555544422       366666776666632 23378888888888 54444446666555 445677777443


Q ss_pred             C-------------chhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccc
Q psy10488         98 S-------------QLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQ  164 (462)
Q Consensus        98 s-------------E~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq  164 (462)
                      .             ..||-..++|+--|+...++.-|.+.++.+.+++.+-    .+....+..|=....++|-+++   
T Consensus       114 ~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~----k~l~~D~~~~v~~iL~~l~~~V---  186 (330)
T PF11707_consen  114 KKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALF----KGLRKDPPETVILILETLKDKV---  186 (330)
T ss_pred             cccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHH----hcccCCCHHHHHHHHHHHHHHh---
Confidence            2             2999999999999999999998889999998877654    4444455555555555555533   


Q ss_pred             cccccCCCCCCcccccCchHHHHHHHHHhcCcc
Q psy10488        165 ILYTRHPEPESHYRLENPMILKVVATLIRQSKQ  197 (462)
Q Consensus       165 ~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~  197 (462)
                       +....-....-++++|...|.-|+.+-....+
T Consensus       187 -l~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~  218 (330)
T PF11707_consen  187 -LKDSSVSRSTKCKLFNEWTLSQLASLYSRDGE  218 (330)
T ss_pred             -ccCCCCChhhhhhhcCHHHHHHHHHHhcccCC
Confidence             22233333344799999999999997776655

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=81.78  E-value=4  Score=39.09  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=84.4

Q ss_pred             hcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcc-cccc-ccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcc
Q psy10488         83 MKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHK-RKYD-VMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEH  160 (462)
Q Consensus        83 ~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~k-RK~~-~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~  160 (462)
                      .......+--++.-++.-+|..|++++..+|.++..= ...+ ...+..=|+.+|.+|-.--    ..++.+|.-.|.-.
T Consensus        38 ~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i----~~lH~~Ll~~L~~E  113 (182)
T PF13251_consen   38 RPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMI----MELHRGLLLALQAE  113 (182)
T ss_pred             CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHH----HHHHHHHHHHHhcc
Confidence            3345556666788899999999999999999885221 1111 2244557777788876322    45577777766543


Q ss_pred             cccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhh
Q psy10488        161 ISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRR  224 (462)
Q Consensus       161 iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRr  224 (462)
                      -++..               ..++||+++-|+++++=.-=.+.+-..+++.+..++.++-.|.+
T Consensus       114 ~~~~~---------------l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~  162 (182)
T PF13251_consen  114 KSPPV---------------LTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVR  162 (182)
T ss_pred             cccHH---------------HHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHH
Confidence            33332               57999999999999887655566777788888888887555544

>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted

Probab=80.16  E-value=8.8  Score=30.63  Aligned_cols=55  Identities=13%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHHhcCCCc
Q psy10488         20 IRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQE-DENLHDVLQTLISLMCDHPAC   76 (462)
Q Consensus        20 IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~E-d~nl~DVL~mli~LLsE~P~~   76 (462)
                      .|..|-.|+.+-.  +.+++++|++.++.+.....+ .....+.+...+..+-..|..
T Consensus         3 a~~~l~~Fa~rAf--RRp~~~~e~~~~~~~~~~~~~~g~~~~~a~~~~l~aiL~SP~F   58 (64)
T PF07637_consen    3 AREILRRFARRAF--RRPLTDEEVDRYLALYDSARAQGEDFEEALKEALQAILCSPSF   58 (64)
T ss_pred             HHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCcch
Confidence            5888999999977  669999999999999998777 688999998888877777874

These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	462
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 7e-13
 Identities = 85/528 (16%), Positives = 153/528 (28%), Gaps = 169/528 (32%)

Query: 10  PRPAQKDILAIRAYILLFLKQLM---------MLGPG--------VKEDELQSILNY--- 49
            R   +  L +R      L +L          +LG G            ++Q  +++   
Sbjct: 132 SRL--QPYLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 50  ---LTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQAL 106
              L      E + ++LQ L+  + D                   ++ + Q++L RL   
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRS----DHSSNIKLRIHSIQAELRRLLKS 240

Query: 107 KLLGFFLSRSTHKRKY----DVMSPHNLY-------TLLAERLLQHESSLSFATYNVLYE 155
           K          ++       +V +             LL  R  Q    LS AT   +  
Sbjct: 241 KP---------YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 156 I-----LTEHISQQIL--YTRHPE---PESHYRLENPMILKVVATLIRQ----------- 194
                 LT    + +L  Y        P       NP  L ++A  IR            
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHV 350

Query: 195 --SKQSELL---------LEVKKLFLSDLTLLCNNNRENRR---TVLQMSVWQGMPIEVA 240
              K + ++          E +K+F   L++       +      +L + +W  +     
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD-RLSVF----PPSAHIPTILLSL-IWFDVIKSDV 404

Query: 241 VSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHR 300
           +  + +L           SL    +E +   S+  I    L L         L     HR
Sbjct: 405 MVVVNKLHK--------YSL----VEKQPKESTISIPSIYLELKVKLENEYAL-----HR 447

Query: 301 ALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKD----------LHK 350
           ++++   YN P                  +++D+         P  D          L  
Sbjct: 448 SIVDH--YNIPKT---------------FDSDDL-------IPPYLDQYFYSHIGHHLKN 483

Query: 351 LLQDMDVNRLRAAIYRDME--ESK--QAQFLSLAVVYFISVLM-VSKYRD-ILEPPPMLP 404
           +     +   R  ++ D    E K         A    ++ L  +  Y+  I +  P   
Sbjct: 484 IEHPERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 405 RALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPP 452
           R ++  L  +     E         L+ SKY D+L        AL   
Sbjct: 543 RLVNAIL--DFLPKIE-------ENLICSKYTDLLR------IALMAE 575

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 65/457 (14%), Positives = 137/457 (29%), Gaps = 112/457 (24%)

Query: 2   NHNHIVDGPRPAQ----KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDE 57
           +H+H +D          KDIL++      F          V   + + + +   ++   E
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSV------FEDAF------VDNFDCKDVQDMPKSILSKE 49

Query: 58  NLHDVLQT---------LISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQ-ALK 107
            +  ++ +         L   +      +V  F +++ +R  +K L S  +  + Q ++ 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 108 LLGFFLSRSTHKRKYDVMSPHN-----LYTLLAERLLQHESSLSFATYNVLY-------E 155
              +   R        V + +N      Y  L + LL+    L  A   ++         
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE----LRPAKNVLIDGVLGSGKT 164

Query: 156 ILTEHISQQILYTRHPEPESHY----RLENPM-ILKVVATLIRQSKQS-----------E 199
            +   +          + +  +       +P  +L+++  L+ Q   +           +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 200 LLLEVKKLFLSDLTLLCNNNRENRRTVL----QMSVWQGMPIEVAVSFLQRLVNMADVLV 255
           L +   +  L    LL +   EN   VL        W    +   +    R   + D L 
Sbjct: 225 LRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 256 FASSLNFAELEAEKNMS---SGGILRQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPT 312
            A++ + +       ++      +L + L         +C         L  +P      
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYL---------DCRPQDLPREVLTTNPR----- 328

Query: 313 KNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDMDVNRLRAAIYRDMEESK 372
                 S+I           D      +      D    + +  +N L  A YR M    
Sbjct: 329 ----RLSII-AESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---- 374

Query: 373 QAQFLSLAVVYF-------ISVLMV----SKYRDILE 398
              F  L+V  F         +L +        D++ 
Sbjct: 375 ---FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMV 406

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	462
3grl_A	651	General vesicular transport factor P115; vesicle t	96.7
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.3
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.27
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	94.26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	93.76
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	91.75
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	89.98
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	88.13
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	88.04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	87.66
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	87.04
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	86.33
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	86.3
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	85.73
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	85.71
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	83.29
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	82.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	81.27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	80.81

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.70  E-value=0.0052  Score=66.71  Aligned_cols=250  Identities=18%  Similarity=0.155  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhh-cccccHHHHHHHHHHHHhcCCCc----------------chhh
Q psy10488         20 IRAYILLFLKQLMMLGPGV--KEDELQSILNYLTTV-QEDENLHDVLQTLISLMCDHPAC----------------LVPA   80 (462)
Q Consensus        20 IR~~LL~~lkqLi~~~~~i--s~~El~AIlnfl~t~-~Ed~nl~DVL~mli~LLsE~P~~----------------~~p~   80 (462)
                      -|+.++.+-.  ++++-..  ....+..+++-|.+- .|++-+.-||+.+..+++..+..                +...
T Consensus        39 RR~Av~~Lk~--~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~  116 (651)
T 3grl_A           39 RRNAVRALKS--LSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI  116 (651)
T ss_dssp             HHHHHHHHHH--TTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred             HHHHHHHHHH--HHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence            4677776655  3443222  256688888888775 55677888999998888865431                2233


Q ss_pred             h-hhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488         81 F-DMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTE  159 (462)
Q Consensus        81 f-d~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle  159 (462)
                      | -+.+|++.++.||.+++..+|++|+|+|..++.+.+.+-+.-.......-+.|-+-|.  ..  .....|----+|.+
T Consensus       117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~--d~--rE~iRneallLL~~  192 (651)
T 3grl_A          117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA--DS--REVIRNDGVLLLQA  192 (651)
T ss_dssp             HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG--CS--SHHHHHHHHHHHHH
T ss_pred             HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh--Cc--hHHHHHHHHHHHHH
Confidence            3 3557999999999999999999999999999988887544333322122222222221  11  23334422222221


Q ss_pred             ccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhhcccCCcch--
Q psy10488        160 HISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPI--  237 (462)
Q Consensus       160 ~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~wQ~l~i--  237 (462)
                       +|..     +.+..  -.++.-.....+|.+|+.-.....-+-|-.. |.=+..|+..|+.|..-+.+...-+.+..  
T Consensus       193 -Lt~~-----n~~iQ--klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC-L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL  263 (651)
T 3grl_A          193 -LTRS-----NGAIQ--KIVAFENAFERLLDIITEEGNSDGGIVVEDC-LILLQNLLKNNNSNQNFFKEGSYIQRMKPWF  263 (651)
T ss_dssp             -HHTT-----CHHHH--HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH-HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred             -HhcC-----CHHHH--HHHHHhccHHHHHHHHHhcCCCccchhHHHH-HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence             1100     00000  1122223556677777754443333333222 34456677788888888777655443210  


Q ss_pred             -----HHHHHHHHHHHH------hhhhheeecCCCchhhhhhccCCcchHHHHHHHHHh
Q psy10488        238 -----EVAVSFLQRLVN------MADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVC  285 (462)
Q Consensus       238 -----e~a~~fl~Rl~~------lvDvlvfas~lnFsEiEaEKnMssGGilRQcLRlvc  285 (462)
                           +.-|+ =||+.+      .+.+||=.++-.=+-...-+-|-.+|++++.+|+.-
T Consensus       264 ~~~~~~~~W~-~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~  321 (651)
T 3grl_A          264 EVGDENSGWS-AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM  321 (651)
T ss_dssp             CCCSCSSCCC-HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred             CCCccccccH-HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence                 01111 233333      455565544321123345566777888888888754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.30  E-value=0.028  Score=48.98  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeec
Q psy10488         19 AIRAYILLFLKQLMMLGP-G----VKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKL   93 (462)
Q Consensus        19 ~IR~~LL~~lkqLi~~~~-~----is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkL   93 (462)
                      ++|..-+..+..+..... .    +..+=+..+++++...  +..+....-..+.-++.+.......+-+.+|+..++++
T Consensus        17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l   94 (252)
T 4hxt_A           17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL   94 (252)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            455555555555443221 0    0113366677766542  22222222233334444333445556677999999999


Q ss_pred             ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCC
Q psy10488         94 LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEP  173 (462)
Q Consensus        94 L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~  173 (462)
                      |.++++.+|..|+..|+.+-...+..++ ..+ ..+....|-+-|.......-.....+|..+..+  ++..        
T Consensus        95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~--------  162 (252)
T 4hxt_A           95 LTSTDSEVQKEAARALANIASGPDEAIK-AIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEA--------  162 (252)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHH-HHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHH--------
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHH--------
Confidence            9999999999999999999764443332 222 245566666544433323333344444443322  1111        


Q ss_pred             CCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488        174 ESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM  229 (462)
Q Consensus       174 ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~  229 (462)
                        ...+....++..+..++....+     ++|..-+.=+-.++..++++++.+.+.
T Consensus       163 --~~~~~~~~~i~~L~~ll~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~l~~~  211 (252)
T 4hxt_A          163 --IKAIVDAGGVEVLVKLLTSTDS-----EVQKEAARALANIASGPTSAIKAIVDA  211 (252)
T ss_dssp             --HHHHHHTTHHHHHHHHTTCSCH-----HHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred             --HHHHHHCcCHHHHHHHHCCCCH-----HHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence              1234456788889999984332     467777888888999999999888653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.27  E-value=0.018  Score=49.78  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccc
Q psy10488         41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKR  120 (462)
Q Consensus        41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kR  120 (462)
                      +-...+..++ ...|.+-..+++..+-.+ +.+.......+-..+|+..++++|.++++.+|..|+..||.+-...+..+
T Consensus        12 ~~~~~l~~LL-~s~~~~v~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           12 SELPQMVQQL-NSPDQQELQSALRKLSQI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             -CHHHHHHHT-TCSCHHHHHHHHHHHHHH-HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chhHHHHHHh-cCCCHHHHHHHHHHHHHH-HcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            3344455555 334444445555555554 43344555566667999999999999999999999999999875554443


Q ss_pred             cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhH
Q psy10488        121 KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSEL  200 (462)
Q Consensus       121 K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~  200 (462)
                      + ..+ .......|-+-|-......-.....+|..+..+  ++..          ...+.....+..+.+++....    
T Consensus        90 ~-~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~----------~~~~~~~~~i~~L~~ll~~~~----  151 (210)
T 4db6_A           90 Q-AVI-DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ----------IQAVIDAGALPALVQLLSSPN----  151 (210)
T ss_dssp             H-HHH-HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHH----------HHHHHHTTHHHHHHHHTTCSC----
T ss_pred             H-HHH-HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--CHHH----------HHHHHHcCcHHHHHHHHcCCC----
Confidence            3 222 334445555544333323333444455544332  1111          112345668888888887532    


Q ss_pred             HHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        201 LLEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       201 ~m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                       .+++..-+.=+-.++..+++|+..+.+
T Consensus       152 -~~v~~~a~~aL~~l~~~~~~~~~~~~~  178 (210)
T 4db6_A          152 -EQILQEALWALSNIASGGNEQKQAVKE  178 (210)
T ss_dssp             -HHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence             246777788888899999999987754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=94.26  E-value=0.047  Score=47.57  Aligned_cols=166  Identities=17%  Similarity=0.221  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcccc
Q psy10488         42 ELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRK  121 (462)
Q Consensus        42 El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK  121 (462)
                      .+..++.++..-+ .+-...++..+-.+.++.| .....+-..+|+..++++|.+.++.+|..|+..|+.+-...+..++
T Consensus         3 ~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            3 DVEKLVKLLTSTD-SETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             HHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5677788776543 4444556666666666543 3455556679999999999999999999999999999765443333


Q ss_pred             ccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHH
Q psy10488        122 YDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELL  201 (462)
Q Consensus       122 ~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~  201 (462)
                       . +...+....|.+-|.......-.....+|..+..+  ++.          ....+.....+..+.+++....+    
T Consensus        81 -~-~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~----------~~~~~~~~~~i~~L~~~l~~~~~----  142 (252)
T 4hxt_A           81 -A-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDE----------AIKAIVDAGGVEVLVKLLTSTDS----  142 (252)
T ss_dssp             -H-HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHH----------HHHHHHHTTHHHHHHHHTTCSCH----
T ss_pred             -H-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHH----------HHHHHHHCCCHHHHHHHHcCCCH----
Confidence             2 22334455555544422222222233333332211  111          11224445678888888874432    


Q ss_pred             HHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        202 LEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       202 m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                       +++..-+.=+-.|+..++++++.+.+
T Consensus       143 -~~~~~a~~~L~~l~~~~~~~~~~~~~  168 (252)
T 4hxt_A          143 -EVQKEAARALANIASGPDEAIKAIVD  168 (252)
T ss_dssp             -HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             35777777788888888888877754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=93.76  E-value=0.072  Score=47.10  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=82.1

Q ss_pred             hhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy10488         78 VPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEIL  157 (462)
Q Consensus        78 ~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEIL  157 (462)
                      ...+-..||+..++++|.++++.+|-.|+..||.+-...+.+ . ..+...+....|-+-|.......-.....+|..+.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  166 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-I-QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-H-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH-H-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            344556689999999999999999999999999996443322 1 22333345555555443222223333344444433


Q ss_pred             hcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        158 TEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       158 le~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                      .+.  +..          ...+....++..+..++... +    .+++..-+.=|-.|+..+++++..+.+
T Consensus       167 ~~~--~~~----------~~~~~~~~~i~~L~~ll~~~-~----~~v~~~a~~~L~~l~~~~~~~~~~~~~  220 (252)
T 4db8_A          167 SGG--NEQ----------IQAVIDAGALPALVQLLSSP-N----EQILQEALWALSNIASGGNEQKQAVKE  220 (252)
T ss_dssp             TSC--HHH----------HHHHHHTTCHHHHHHGGGCS-S----HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCC--hHH----------HHHHHHCCCHHHHHHHHCCC-C----HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            221  111          11233456778888888754 2    236777788888889899999988864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=91.75  E-value=0.13  Score=45.44  Aligned_cols=156  Identities=14%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHH
Q psy10488         53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYT  132 (462)
Q Consensus        53 ~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfs  132 (462)
                      ..|.+-...++..+-.+++. .......+-..+|+..++++|.+.++.+|..|+..||.+-.+.+..++ ..+ ..+...
T Consensus        23 s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~-~~g~i~   99 (252)
T 4db8_A           23 SDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ-AVI-DAGALP   99 (252)
T ss_dssp             SSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-HHH-HTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-HHH-HcCCHH
Confidence            34445556677777677776 233344555678999999999999999999999999999865544433 222 334555


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy10488        133 LLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDL  212 (462)
Q Consensus       133 lLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DL  212 (462)
                      .|.+-|.......-.....+|..+..+.-..            ...+.....+..+.+++... +.    +++..-+.=+
T Consensus       100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~------------~~~~~~~~~i~~L~~lL~~~-~~----~v~~~a~~~L  162 (252)
T 4db8_A          100 ALVQLLSSPNEQILQEALWALSNIASGGNEQ------------IQAVIDAGALPALVQLLSSP-NE----QILQEALWAL  162 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH------------HHHHHHTTHHHHHHHGGGCS-CH----HHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCCchH------------HHHHHHCCCHHHHHHHHhCC-CH----HHHHHHHHHH
Confidence            5555444322222333334444432111000            02244556788888888643 22    4577777778


Q ss_pred             HHHhhcChhhhhHHHh
Q psy10488        213 TLLCNNNRENRRTVLQ  228 (462)
Q Consensus       213 l~L~~~N~eNRrtlLQ  228 (462)
                      -.|+..++++++.+.+
T Consensus       163 ~~l~~~~~~~~~~~~~  178 (252)
T 4db8_A          163 SNIASGGNEQIQAVID  178 (252)
T ss_dssp             HHHTTSCHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHH
Confidence            8888889888887764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=89.98  E-value=1.5  Score=43.49  Aligned_cols=165  Identities=15%  Similarity=0.184  Sum_probs=97.7

Q ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488         43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY  122 (462)
Q Consensus        43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~  122 (462)
                      +.+|+.++. ..+.+-..+++..+-. ++.++......+-..+++..++++|.+.++.+|..|+..||.+..+.+..++ 
T Consensus       246 l~~L~~lL~-~~~~~v~~~a~~aL~~-l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~-  322 (528)
T 4b8j_A          246 LPALARLIH-SNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ-  322 (528)
T ss_dssp             HHHHHHHTT-CCCHHHHHHHHHHHHH-HTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHH-HHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH-
Confidence            344444442 2233334444444333 4445555555555669999999999999999999999999999875543333 


Q ss_pred             cccCcchhHHHHHHHHhcC-CCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHH
Q psy10488        123 DVMSPHNLYTLLAERLLQH-ESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELL  201 (462)
Q Consensus       123 ~~m~~~~lfslLseRL~~~-~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~  201 (462)
                      ..+ ..++...|.+-|... ....-...+.+|-.+..+  ++.+.          ..+....++..+.+++.... .   
T Consensus       323 ~~~-~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~--~~~~~----------~~~~~~~~i~~L~~lL~~~~-~---  385 (528)
T 4b8j_A          323 CII-DHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NKDQI----------QAVINAGIIGPLVNLLQTAE-F---  385 (528)
T ss_dssp             HHH-TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS--CHHHH----------HHHHHTTCHHHHHHHHHHSC-H---
T ss_pred             HHH-HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC--CHHHH----------HHHHHCCCHHHHHHHHhcCC-H---
Confidence            222 355666666655533 333344445555554432  22211          11233466778888887542 2   


Q ss_pred             HHHHHHHHHHHHHHhhc-ChhhhhHHHh
Q psy10488        202 LEVKKLFLSDLTLLCNN-NRENRRTVLQ  228 (462)
Q Consensus       202 m~vk~~fL~DLl~L~~~-N~eNRrtlLQ  228 (462)
                       ++|+..+.=|-.++.. +++++..+.+
T Consensus       386 -~v~~~a~~aL~nl~~~~~~~~~~~l~~  412 (528)
T 4b8j_A          386 -DIKKEAAWAISNATSGGSHDQIKYLVS  412 (528)
T ss_dssp             -HHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence             3566666666666666 7888888764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=88.13  E-value=0.64  Score=46.38  Aligned_cols=130  Identities=16%  Similarity=0.145  Sum_probs=77.7

Q ss_pred             hhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488         80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTE  159 (462)
Q Consensus        80 ~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle  159 (462)
                      ..-..+++..++++|.++++.+|..|+..|+.+-...+..++ ..+ ...+...|.+-|.......-.....+|-.+..+
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~-~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~  329 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ-AVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  329 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHH-HHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHH-HHH-hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence            444567899999999999999999999999999865443222 222 234555555544322212222333344433322


Q ss_pred             ccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        160 HISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       160 ~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                      .  +.+          ...+....++..+..++.... .    .+|+.-+.=|-.++..++++++.+++
T Consensus       330 ~--~~~----------~~~~~~~~~l~~L~~lL~~~~-~----~vr~~A~~aL~~l~~~~~~~~~~~~~  381 (530)
T 1wa5_B          330 N--DLQ----------TQVVINAGVLPALRLLLSSPK-E----NIKKEACWTISNITAGNTEQIQAVID  381 (530)
T ss_dssp             C--HHH----------HHHHHHTTHHHHHHHHTTCSC-H----HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             C--HHH----------HHHHHHcchHHHHHHHHcCCC-H----HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1  111          112334568888888887552 2    35666666667777778888877764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=88.04  E-value=0.89  Score=43.91  Aligned_cols=167  Identities=16%  Similarity=0.174  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhh-----------hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeee-cccCCCchhHHhHHHHH
Q psy10488         42 ELQSILNYLTT-----------VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFK-LLTSQSQLIRLQALKLL  109 (462)
Q Consensus        42 El~AIlnfl~t-----------~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffk-LL~s~sE~IRl~ALKlL  109 (462)
                      .++.++..|..           .-+.++-.+.+.-+-.++.+ . .....|.+.||+..+++ ||.++++.||-.|...|
T Consensus        29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-M-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-H-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-h-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            36666666654           22334566666666665553 2 24455677899999999 99999999999999999


Q ss_pred             HHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHH
Q psy10488        110 GFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVA  189 (462)
Q Consensus       110 G~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa  189 (462)
                      |.+-...+.-|+ .+++. +....|-. |+...+.. ..--++++.+  .+++-      +.++ ....|..-..+.++.
T Consensus       107 g~ia~~n~~~~~-~vv~~-g~l~~Ll~-LL~~~~~~-~v~~~A~~AL--snl~~------~~~~-~~~~~~~~ggi~~L~  173 (296)
T 1xqr_A          107 GTCSQNVAAIQE-QVLGL-GALRKLLR-LLDRDACD-TVRVKALFAI--SCLVR------EQEA-GLLQFLRLDGFSVLM  173 (296)
T ss_dssp             HHHHTTCHHHHH-HHHHT-THHHHHHH-HHHHCSCH-HHHHHHHHHH--HHHHT------TCHH-HHHHHHHTTHHHHHH
T ss_pred             HHHHhCCHHHHH-HHHHC-CCHHHHHH-HHccCCCH-HHHHHHHHHH--HHHHc------CCcH-HHHHHHHCCCHHHHH
Confidence            998876665554 33333 33333333 33322121 2234455542  22110      0000 001233345778888


Q ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        190 TLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       190 ~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                      ++|... +.    ++|+.-..=+-.|+..++++++.+.+
T Consensus       174 ~lL~~~-d~----~v~~~A~~aLs~L~~~~~~~~~~vv~  207 (296)
T 1xqr_A          174 RAMQQQ-VQ----KLKVKSAFLLQNLLVGHPEHKGTLCS  207 (296)
T ss_dssp             HHHHSS-CH----HHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHcCC-CH----HHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            888743 22    35555555556667778999998853

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=87.66  E-value=0.99  Score=42.86  Aligned_cols=166  Identities=13%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccc
Q psy10488         41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKR  120 (462)
Q Consensus        41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kR  120 (462)
                      +=+..|++++.. .|.+-..++.. .++-+++++......+-..+++..++++|.++++.+|..|+..||.+..+.+..+
T Consensus       192 ~~l~~L~~~l~~-~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  269 (450)
T 2jdq_A          192 PCLNVLSWLLFV-SDTDVLADACW-ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT  269 (450)
T ss_dssp             GGHHHHHHHTTC-CCHHHHHHHHH-HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcc-CCHHHHHHHHH-HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence            335555555532 22222233333 3344444443344455567899999999999999999999999999986554332


Q ss_pred             cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhH
Q psy10488        121 KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSEL  200 (462)
Q Consensus       121 K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~  200 (462)
                      + ..+. .++...|-+-|.......-...+.+|-.+..+  ++...          ..+....++..+.+++....+   
T Consensus       270 ~-~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~--~~~~~----------~~~~~~~~l~~L~~~l~~~~~---  332 (450)
T 2jdq_A          270 Q-VILN-CSALQSLLHLLSSPKESIKKEACWTISNITAG--NRAQI----------QTVIDANIFPALISILQTAEF---  332 (450)
T ss_dssp             H-HHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHH----------HHHHHTTHHHHHHHHHHHSCH---
T ss_pred             H-HHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHH----------HHHHHCCCHHHHHHHHhcCCH---
Confidence            2 2222 24555555444322222222333333332222  11110          112234677778888874322   


Q ss_pred             HHHHHHHHHHHHHHHhhc-ChhhhhHHH
Q psy10488        201 LLEVKKLFLSDLTLLCNN-NRENRRTVL  227 (462)
Q Consensus       201 ~m~vk~~fL~DLl~L~~~-N~eNRrtlL  227 (462)
                        ++|+.-..=+-.++.. ++++++.++
T Consensus       333 --~v~~~a~~~L~~l~~~~~~~~~~~l~  358 (450)
T 2jdq_A          333 --RTRKEAAWAITNATSGGSAEQIKYLV  358 (450)
T ss_dssp             --HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence              3566655555555554 666776664

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=87.04  E-value=0.41  Score=41.12  Aligned_cols=131  Identities=14%  Similarity=0.098  Sum_probs=78.6

Q ss_pred             hhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHh
Q psy10488         79 PAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILT  158 (462)
Q Consensus        79 p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILl  158 (462)
                      |-++..++...+.+||.++++.+|..|+..|+.+-...+..++ .. ........|.+-|.......-.....+|..+..
T Consensus         6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~-~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A            6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQ-AV-IDAGALPALVQLLSSPNEQILQEALWALSNIAS   83 (210)
T ss_dssp             -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HH-HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHH-HH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            3445567888999999999999999999999998755544433 22 233555666655543333333333444444332


Q ss_pred             cccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        159 EHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       159 e~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                      +.  +..          ...+.....+..+.+++...+     ..+|..-..=+-.++..++++++.+++
T Consensus        84 ~~--~~~----------~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~  136 (210)
T 4db6_A           84 GG--NEQ----------IQAVIDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQIQAVID  136 (210)
T ss_dssp             SC--HHH----------HHHHHHTTCHHHHHHHTTCSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CC--cHH----------HHHHHHCCCHHHHHHHHcCCc-----HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            21  111          112334567788888887553     235666677777888889988887763

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=86.33  E-value=1.2  Score=44.30  Aligned_cols=95  Identities=13%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCC-chhHHhHHHHHHHHHhcCCcc
Q psy10488         41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQS-QLIRLQALKLLGFFLSRSTHK  119 (462)
Q Consensus        41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~s-E~IRl~ALKlLG~fL~~~~~k  119 (462)
                      .++..|+..+. ..+.+--...+..+-.+++..+......+-..+++..++++|.+.+ +.+|..|+..||.+-...+..
T Consensus        74 ~~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           74 ESLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             -CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            34788888884 3344455667777888888665455666667799999999999987 999999999999998765544


Q ss_pred             ccccccCcchhHHHHHHHH
Q psy10488        120 RKYDVMSPHNLYTLLAERL  138 (462)
Q Consensus       120 RK~~~m~~~~lfslLseRL  138 (462)
                      ++ ..+. .+....|.+-|
T Consensus       153 ~~-~~~~-~g~i~~L~~lL  169 (528)
T 4b8j_A          153 TK-VVID-HGAVPIFVKLL  169 (528)
T ss_dssp             HH-HHHH-TTHHHHHHHHT
T ss_pred             HH-HHHh-CCcHHHHHHHh
Confidence            44 2222 24444444433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=86.30  E-value=1.6  Score=43.44  Aligned_cols=129  Identities=19%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             hhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcc
Q psy10488         81 FDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEH  160 (462)
Q Consensus        81 fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~  160 (462)
                      +-..+|+..++++|.++++.+|-.|+..||.+-...+..|+.  +...+....|.+-|.......-.....+|..+..+.
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~--~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY--VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH--HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH--HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence            334689999999999999999999999999998655444432  222344555554443322222233344444443321


Q ss_pred             cccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        161 ISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       161 iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                       .|.          . .......++..+.+++...+ .    +++...+.=|-.|+..++++++.++.
T Consensus       247 -~~~----------~-~~~~~~~~l~~L~~lL~~~d-~----~v~~~a~~~L~~L~~~~~~~~~~~~~  297 (530)
T 1wa5_B          247 -KPQ----------P-DWSVVSQALPTLAKLIYSMD-T----ETLVDACWAISYLSDGPQEAIQAVID  297 (530)
T ss_dssp             -SSC----------C-CHHHHGGGHHHHHHHTTCCC-H----HHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             -CCC----------C-cHHHHHhHHHHHHHHHcCCC-H----HHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence             011          0 11223567888888886433 2    35666666677777777777766654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=85.73  E-value=2.9  Score=39.61  Aligned_cols=126  Identities=8%  Similarity=0.066  Sum_probs=69.3

Q ss_pred             hcCCeeEeeecccC-CCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhccc
Q psy10488         83 MKQGVRTVFKLLTS-QSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHI  161 (462)
Q Consensus        83 ~~~Gi~iffkLL~s-~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~i  161 (462)
                      ..+++..++++|.+ .+..+|..|+..||.+.....++.+...+  ..+...|.+-|.......-.....+|..+..+ .
T Consensus       147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~  223 (450)
T 2jdq_A          147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWALSYLSDG-P  223 (450)
T ss_dssp             HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-S
T ss_pred             HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-C
Confidence            45889999999996 78999999999999998766344333333  55666666554322211112222233322111 0


Q ss_pred             ccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHH
Q psy10488        162 SQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVL  227 (462)
Q Consensus       162 Spq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlL  227 (462)
                      .+.           ...+....++..+..++.. ++.    +++..-+.=+-.++..+++.++.++
T Consensus       224 ~~~-----------~~~~~~~~~i~~L~~ll~~-~~~----~v~~~a~~~L~~l~~~~~~~~~~~~  273 (450)
T 2jdq_A          224 NDK-----------IQAVIDAGVCRRLVELLMH-NDY----KVVSPALRAVGNIVTGDDIQTQVIL  273 (450)
T ss_dssp             HHH-----------HHHHHHTTTHHHHHHHTTC-SCH----HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             cHH-----------HHHHHHcCcHHHHHHHHCC-Cch----hHHHHHHHHHHHHhhCChHHHHHHH
Confidence            000           0112223456666667652 222    3455556666666666666555544

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=85.71  E-value=4  Score=41.20  Aligned_cols=158  Identities=15%  Similarity=0.160  Sum_probs=91.8

Q ss_pred             hhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhH
Q psy10488         52 TVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLY  131 (462)
Q Consensus        52 t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lf  131 (462)
                      ...+.+-..|+..-+ .-+++++.....++...|++..+++||.++++.++..|+..||.+..+....+. ..+ ..+..
T Consensus       261 ~~~~~~v~~~a~~aL-~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-~i~-~~g~l  337 (529)
T 3tpo_A          261 HHNDPEVLADSCWAI-SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ-KVI-DAGAL  337 (529)
T ss_dssp             TSSCHHHHHHHHHHH-HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHH-HTTGG
T ss_pred             cCCcHHHHHHHHHHH-HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH-HHh-hcccH
Confidence            344555555655444 445556777777777889999999999999999999999999999865543332 222 22233


Q ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHH
Q psy10488        132 TLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSD  211 (462)
Q Consensus       132 slLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~D  211 (462)
                      ..|..-|.......-...+.+|-.+..+  ++.+.          ..+..-.++..+..++.....     ++|+.-..=
T Consensus       338 ~~L~~LL~~~~~~i~~~a~~aL~nl~~~--~~~~~----------~~v~~~g~i~~Lv~lL~~~~~-----~v~~~A~~a  400 (529)
T 3tpo_A          338 AVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQI----------QQVVNHGLVPFLVGVLSKADF-----KTQKAAAWA  400 (529)
T ss_dssp             GGHHHHTTCSSHHHHHHHHHHHHHHHTS--CHHHH----------HHHHHTTHHHHHHHHHHSSCH-----HHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcc--cHHHH----------HHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHH
Confidence            3333323322223334455566665544  22211          112234567777777764432     245444444


Q ss_pred             HHHHhh-cChhhhhHHHhh
Q psy10488        212 LTLLCN-NNRENRRTVLQM  229 (462)
Q Consensus       212 Ll~L~~-~N~eNRrtlLQ~  229 (462)
                      |..++. .++++++.|.+.
T Consensus       401 L~nl~~~~~~~~~~~l~~~  419 (529)
T 3tpo_A          401 ITNYTSGGTVEQIVYLVHC  419 (529)
T ss_dssp             HHHHHHHSCHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHC
Confidence            444443 467788777654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=83.29  E-value=2.8  Score=43.29  Aligned_cols=194  Identities=11%  Similarity=0.053  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHhcCCC----C-CHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeec
Q psy10488         19 AIRAYILLFLKQLMMLGPG----V-KEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKL   93 (462)
Q Consensus        19 ~IR~~LL~~lkqLi~~~~~----i-s~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkL   93 (462)
                      .+|..-+..+..|-.....    + ..+=+.+|+..|....+.+-...+...+- .|+.++. ....+-..+|+..++++
T Consensus        29 ~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~-~Ls~~~~-~~~~i~~~g~i~~Lv~l  106 (644)
T 2z6h_A           29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH-NLSHHRE-GLLAIFKSGGIPALVKM  106 (644)
T ss_dssp             HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHTTSHH-HHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHH-HHhcChh-hHHHHHHcCCHHHHHHH
Confidence            4555556666655432211    0 12446777777765433333344444433 5565544 33444455899999999


Q ss_pred             ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCC
Q psy10488         94 LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEP  173 (462)
Q Consensus        94 L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~  173 (462)
                      |.++++.+|..|+..|+.+.......++  .+........|-+-|......+......+|..+-.+.  +..        
T Consensus       107 L~~~~~~v~~~A~~aL~nL~~~~~~~~~--~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~--------  174 (644)
T 2z6h_A          107 LGSPVDSVLFYAITTLHNLLLHQEGAKM--AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN--QES--------  174 (644)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHSTTHHH--HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--HHH--------
T ss_pred             HhCCCHHHHHHHHHHHHHHHhCcchhHH--HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC--cHH--------
Confidence            9999999999999999999876543332  2222344445544443222111111122444443321  110        


Q ss_pred             CCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhhcccC
Q psy10488        174 ESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ  233 (462)
Q Consensus       174 ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~wQ  233 (462)
                        ...+.....+..+.++++..... .   ++...+.= +.-+..+++||..+.+..+++
T Consensus       175 --~~~i~~~g~v~~Lv~lL~~~~~~-~---~~~~a~~~-L~nLs~~~~~~~~l~~~g~l~  227 (644)
T 2z6h_A          175 --KLIILASGGPQALVNIMRTYTYE-K---LLWTTSRV-LKVLSVCSSNKPAIVEAGGMQ  227 (644)
T ss_dssp             --HHHHHHTTHHHHHHHHHTTCCCH-H---HHHHHHHH-HHHHTTCTTHHHHHHHTTHHH
T ss_pred             --HHHHHHcCChHHHHHHHHcCChH-H---HHHHHHHH-HHHHhcCcccHHHHHHCCCHH
Confidence              01233335567777777765432 1   22222222 333345778888877654443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=82.94  E-value=2  Score=43.34  Aligned_cols=183  Identities=13%  Similarity=0.204  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHhhhcccc---------cHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHH
Q psy10488         41 DELQSILNYLTTVQEDE---------NLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGF  111 (462)
Q Consensus        41 ~El~AIlnfl~t~~Ed~---------nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~  111 (462)
                      +=+.+|++.|..++...         .++-..-..++++..+..++-.+++..+++..+...|.+++..+|..|+|+|+.
T Consensus       109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~  188 (383)
T 3eg5_B          109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA  188 (383)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            44788999998765222         233333345567777777888899999999999999999999999999999998


Q ss_pred             HHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHH
Q psy10488        112 FLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATL  191 (462)
Q Consensus       112 fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~L  191 (462)
                      +-.....+         +.+..+-+-+..+...-...-|..+.+.|-..              ....+ -=..+..|=.+
T Consensus       189 lc~~~~~~---------gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~--------------~~~e~-~~~~m~lIN~l  244 (383)
T 3eg5_B          189 LCILPQPE---------DMNERVLEAMTERAEMDEVERFQPLLDGLKSG--------------TSIAL-KVGCLQLINAL  244 (383)
T ss_dssp             HHTCCSST---------THHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--------------SCHHH-HHHHHHHHHHH
T ss_pred             HHhCcCcC---------CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc--------------CcHHH-HHHHHHHHHHH
Confidence            66433211         11222211111110000001122233322110              01100 01357888889


Q ss_pred             HhcCcchhHHHHHHHHH----HHHHHHHhhcChhhhhHHHhhcccCCcchHHHHHHHHHHH
Q psy10488        192 IRQSKQSELLLEVKKLF----LSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLV  248 (462)
Q Consensus       192 L~qs~~s~~~m~vk~~f----L~DLl~L~~~N~eNRrtlLQ~~~wQ~l~ie~a~~fl~Rl~  248 (462)
                      +.++++-..++.+|..|    |.+++.-+.. -+|-.-.-|+..|....-|+--.+..|+-
T Consensus       245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~-~~~~~L~~Qi~~fe~~~~eD~~el~~r~~  304 (383)
T 3eg5_B          245 ITPAEELDFRVHIRSELMRLGLHQVLQELRE-IENEDMKVQLCVFDEQGDEDFFDLKGRLD  304 (383)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTTHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCChHHHHHHHhc-CCChhHHHHHHHHHHHHHHhHHHHHhhcc
Confidence            99999988899998665    3455555554 34667778999999998899889998873

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=81.27  E-value=3  Score=42.10  Aligned_cols=157  Identities=16%  Similarity=0.173  Sum_probs=85.6

Q ss_pred             hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHH
Q psy10488         53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYT  132 (462)
Q Consensus        53 ~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfs  132 (462)
                      ..+.+-..++.. .++-|++++......+...|++..+++||.+.++.++..|+..||.+..+....++ ..+. .+...
T Consensus       243 ~~~~~v~~~A~~-aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~-~i~~-~g~l~  319 (510)
T 3ul1_B          243 HNDPEVLADSCW-AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ-KVID-AGALA  319 (510)
T ss_dssp             CSCHHHHHHHHH-HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHH-TTGGG
T ss_pred             cCCHHHHHHHHH-HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHH-HHhh-ccchH
Confidence            344444455544 34445666766777777889999999999999999999999999998765443322 1111 11111


Q ss_pred             HHHHHHhcCCC-cchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHH
Q psy10488        133 LLAERLLQHES-SLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSD  211 (462)
Q Consensus       133 lLseRL~~~~~-~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~D  211 (462)
                      .|.. |+.++. ..-...+.+|-.+..+  ++.+.          ..+..-.++..+..++...+.     ++|+.-..=
T Consensus       320 ~L~~-LL~~~~~~v~~~A~~aL~nl~a~--~~~~~----------~~v~~~g~i~~Lv~lL~~~~~-----~v~~~Aa~a  381 (510)
T 3ul1_B          320 VFPS-LLTNPKTNIQKEATWTMSNITAG--RQDQI----------QQVVNHGLVPFLVGVLSKADF-----KTQKEAAWA  381 (510)
T ss_dssp             GCC--CTTCSSHHHHHHHHHHHHHHTTS--CHHHH----------HHHHHTTHHHHHHHHHHSSCH-----HHHHHHHHH
T ss_pred             HHHH-HhcCCCHHHHHHHHHHHHHHHcC--cHHHH----------HHHHhcCCHHHHHHHHcCCCH-----HHHHHHHHH
Confidence            1111 222222 2223334444444332  11110          122234577777788775432     345443333


Q ss_pred             HHHHhh-cChhhhhHHHhhc
Q psy10488        212 LTLLCN-NNRENRRTVLQMS  230 (462)
Q Consensus       212 Ll~L~~-~N~eNRrtlLQ~~  230 (462)
                      |..++. .+++++..|.+..
T Consensus       382 L~Nl~~~~~~~~~~~L~~~g  401 (510)
T 3ul1_B          382 ITNYTSGGTVEQIVYLVHCG  401 (510)
T ss_dssp             HHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHHHccCCHHHHHHHHHCC
Confidence            333433 4677777776543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=80.81  E-value=1.6  Score=42.58  Aligned_cols=171  Identities=12%  Similarity=0.075  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccc
Q psy10488         41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKR  120 (462)
Q Consensus        41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kR  120 (462)
                      +=+..++..+....+.+-...+...+-. ++.++. ....+-..||+..++++|.++++.+|..|+..|+.+....+..+
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~-ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHH-HHcCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence            3455556555543333333334443333 344333 33444456999999999999999999999999999887654433


Q ss_pred             cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhH
Q psy10488        121 KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSEL  200 (462)
Q Consensus       121 K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~  200 (462)
                      +  .+...+....|-+-|.......-.....+|..+-.++  +.          ....+.....+..+.++++...+. .
T Consensus       137 ~--~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~--~~----------~~~~i~~~~~i~~L~~ll~~~~~~-~  201 (529)
T 1jdh_A          137 M--AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN--QE----------SKLIILASGGPQALVNIMRTYTYE-K  201 (529)
T ss_dssp             H--HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--HH----------HHHHHHHTTHHHHHHHHHHHCCCH-H
T ss_pred             H--HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC--HH----------HHHHHHHCCCHHHHHHHHHhCChH-H
Confidence            2  2222334444444333211111111222444333221  11          001122334566777777755432 1


Q ss_pred             HHHHHHHHHHHHHHHhhcChhhhhHHHhhccc
Q psy10488        201 LLEVKKLFLSDLTLLCNNNRENRRTVLQMSVW  232 (462)
Q Consensus       201 ~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~w  232 (462)
                          ++.-...++.-+..+++||..+.+....
T Consensus       202 ----~~~~a~~~L~~l~~~~~~~~~~~~~g~~  229 (529)
T 1jdh_A          202 ----LLWTTSRVLKVLSVCSSNKPAIVEAGGM  229 (529)
T ss_dssp             ----HHHHHHHHHHHHTTSTTHHHHHHHTTHH
T ss_pred             ----HHHHHHHHHHHHhcCcccHHHHHHCCCH
Confidence                1111233344445678888887654433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	462
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.11
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	89.29
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	89.14
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	88.11
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	85.93
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	85.37
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	83.78

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.055  Score=47.25  Aligned_cols=184  Identities=15%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeec
Q psy10488         19 AIRAYILLFLKQLMMLGPGV-----KEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKL   93 (462)
Q Consensus        19 ~IR~~LL~~lkqLi~~~~~i-----s~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkL   93 (462)
                      ++|..-...+..+.......     ..+=+..|+.++..-.+.+-...++.-+-.+...+| .....|-..||+.++.++
T Consensus        74 ~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~gi~~L~~l  152 (264)
T d1xqra1          74 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE-AGLLQFLRLDGFSVLMRA  152 (264)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccch-hhHHHHHHhhhhhHHHHH
Confidence            45666666666544321111     112355666666544444444444555555544433 334566688999999999


Q ss_pred             ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCC
Q psy10488         94 LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEP  173 (462)
Q Consensus        94 L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~  173 (462)
                      |.+.++.++..|+..|+.+....+..++. . ...+....|.+-|.......-.....+|..+..+  +|.....-    
T Consensus       153 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~-~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~~~----  224 (264)
T d1xqra1         153 MQQQVQKLKVKSAFLLQNLLVGHPEHKGT-L-CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD--FPQGVREC----  224 (264)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHCGGGHHH-H-HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT--CHHHHHHH----
T ss_pred             HhcCchHHHHHHHHHHHHHHhccHHHHHH-H-HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CHHHHHHH----
Confidence            99999999999999999999877666543 2 2334455566655544444555555666665443  33332110    


Q ss_pred             CCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHh
Q psy10488        174 ESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLC  216 (462)
Q Consensus       174 ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~  216 (462)
                       .......++.|+...+.+.+.++..+.+    .+.+.|+..|
T Consensus       225 -~~~~l~~~~~L~~~~~~~~~~~~~~e~~----~~~~~ll~~~  262 (264)
T d1xqra1         225 -REPELGLEELLRHRCQLLQQHEEYQEEL----EFCEKLLQTC  262 (264)
T ss_dssp             -HCGGGCHHHHHHHHHHHHTTCGGGHHHH----HHHHHHHHHH
T ss_pred             -HHhhhhHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHh
Confidence             0123456778888888888777765533    3355554443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.29  E-value=0.34  Score=44.84  Aligned_cols=166  Identities=14%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488         43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY  122 (462)
Q Consensus        43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~  122 (462)
                      +.++++++... +..-...+. .++.-++.++.....+....+++..+.+++.+.+..++..|+..|+++..+.+...+ 
T Consensus       206 ~~~L~~ll~~~-~~~~~~~~~-~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~-  282 (503)
T d1wa5b_         206 MEPILGLFNSN-KPSLIRTAT-WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ-  282 (503)
T ss_dssp             HHHHHHGGGSC-CHHHHHHHH-HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHH-
T ss_pred             cccchhhcccC-CHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhh-
Confidence            44556655432 222233333 444455555555555555567888999999999999999999999988754433222 


Q ss_pred             cccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHH
Q psy10488        123 DVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLL  202 (462)
Q Consensus       123 ~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m  202 (462)
                       .+-...++..+.+-|..-......+...+|..+..+.  ..+          ...+....++.++..++.+.++     
T Consensus       283 -~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~--~~~----------~~~~~~~~~l~~l~~ll~~~~~-----  344 (503)
T d1wa5b_         283 -AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN--DLQ----------TQVVINAGVLPALRLLLSSPKE-----  344 (503)
T ss_dssp             -HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHH----------HHHHHHTTHHHHHHHHTTCSCH-----
T ss_pred             -hhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH--HHH----------HHhhhccchHHHHHHHhcCCCH-----
Confidence             2223345555555444322222333334444433321  111          1224456788889988875433     


Q ss_pred             HHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488        203 EVKKLFLSDLTLLCNNNRENRRTVLQM  229 (462)
Q Consensus       203 ~vk~~fL~DLl~L~~~N~eNRrtlLQ~  229 (462)
                      .+|+..+.-+-.++..+++++..+++.
T Consensus       345 ~i~~~~~~~l~nl~~~~~~~~~~i~~~  371 (503)
T d1wa5b_         345 NIKKEACWTISNITAGNTEQIQAVIDA  371 (503)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHc
Confidence            256666777777888888888887653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.14  E-value=1.1  Score=41.32  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHhcCCCC-CHHHH----HHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecc
Q psy10488         20 IRAYILLFLKQLMMLGPGV-KEDEL----QSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLL   94 (462)
Q Consensus        20 IR~~LL~~lkqLi~~~~~i-s~~El----~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL   94 (462)
                      ++......+..|....... ....+    ..++.++ ...|.+.+.+++..+ .-+++++......+-..+++..++.+|
T Consensus       220 ~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         220 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHH-HHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHH-HhhccCCchhhhhhhhhhhhhhhhhcc
Confidence            3444455555555433232 22222    2333433 334555566666644 445555666666666778999999999


Q ss_pred             cCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCC
Q psy10488         95 TSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPE  174 (462)
Q Consensus        95 ~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~d  174 (462)
                      .+.+..++..|+..+|.+..+..  .....+-..++...+..=|-.....+-...+.+|-.+..+  ++.+.        
T Consensus       298 ~~~~~~v~~~al~~l~nl~~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~--~~~~~--------  365 (503)
T d1wa5b_         298 SHESTLVQTPALRAVGNIVTGND--LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG--NTEQI--------  365 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHH--------
T ss_pred             cCCchhhhhhHHHHHHHHHHHHH--HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc--cHHHH--------
Confidence            99999999999999999885433  2333333445555555433222222233445555554433  22221        


Q ss_pred             CcccccCchHHHHHHHHHhcCcchhHHHHHHHH---HHHHHHHHhhcChhhhhHHHh
Q psy10488        175 SHYRLENPMILKVVATLIRQSKQSELLLEVKKL---FLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       175 s~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~---fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                        ..+.+..++..+..++.....     ++|+.   +|..+..-..+.++....+.+
T Consensus       366 --~~i~~~~~l~~li~~l~~~~~-----~v~~~a~~~l~nl~~~~~~~~~~~~~l~~  415 (503)
T d1wa5b_         366 --QAVIDANLIPPLVKLLEVAEY-----KTKKEACWAISNASSGGLQRPDIIRYLVS  415 (503)
T ss_dssp             --HHHHHTTCHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred             --HHHHHccccchhHHhcccCCh-----hHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence              123355677777777764332     23333   344444333444444444443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.11  E-value=0.22  Score=44.30  Aligned_cols=145  Identities=13%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             HHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcch
Q psy10488         67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLS  146 (462)
Q Consensus        67 i~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt  146 (462)
                      +.-++.+...........+.+.++++++.+.++.+|..|+..++++.... .+++. .+...+++..+-+-+......+-
T Consensus       170 l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~-~~~~~~~~~~Lv~ll~~~~~~~~  247 (434)
T d1q1sc_         170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIE-MVVKKGVVPQLVKLLGATELPIV  247 (434)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHH-HHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh-hhhHH-HHhhcccchhcccccccchhhhh
Confidence            33344433333444445567788899999999999999999999986443 23332 23334455555553332222222


Q ss_pred             HHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHH
Q psy10488        147 FATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTV  226 (462)
Q Consensus       147 ~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtl  226 (462)
                      .....+|..+..+  ++..          ...+....++..+.++++..++     ++|..-..=+..++.++.+++..+
T Consensus       248 ~~al~~l~~l~~~--~~~~----------~~~~~~~~~~~~l~~ll~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~i  310 (434)
T d1q1sc_         248 TPALRAIGNIVTG--TDEQ----------TQKVIDAGALAVFPSLLTNPKT-----NIQKEATWTMSNITAGRQDQIQQV  310 (434)
T ss_dssp             HHHHHHHHHHTTS--CHHH----------HHHHHHTTGGGGHHHHTTCSSH-----HHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hchhhhhhhHHhh--hhHH----------HHHHHhccccchHHHhhcccch-----hhhHHHHHHHhhhccccchhHHHH
Confidence            3333444433322  1111          1123345677788888874433     356666666777888888888877


Q ss_pred             Hhhc
Q psy10488        227 LQMS  230 (462)
Q Consensus       227 LQ~~  230 (462)
                      .+..
T Consensus       311 ~~~~  314 (434)
T d1q1sc_         311 VNHG  314 (434)
T ss_dssp             HHTT
T ss_pred             hhhh
Confidence            6543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.88  Score=42.12  Aligned_cols=168  Identities=11%  Similarity=0.082  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488         43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY  122 (462)
Q Consensus        43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~  122 (462)
                      +..++..|....+.+--+.+.. .+.-++.++.... .+-..||+..++++|+++++.++..|...|+.+....+..|+.
T Consensus        61 v~~l~~~L~~~~~~~~~~~a~~-~L~~l~~~~~~~~-~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  138 (529)
T d1jdha_          61 VSAIVRTMQNTNDVETARCTAG-TLHNLSHHREGLL-AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHH-HHHHHTTSHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHH-HHHHHhCCchhHH-HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH
Confidence            4555665555554443333443 4445566554443 3445699999999999999999999999999998776666552


Q ss_pred             cccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHH
Q psy10488        123 DVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLL  202 (462)
Q Consensus       123 ~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m  202 (462)
                        +...+....|-+-|-......-.....+|..+..+.  +..          ...+..-..+..+.++++..+...   
T Consensus       139 --~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~----------~~~~~~~~~~~~L~~ll~~~~~~~---  201 (529)
T d1jdha_         139 --VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN--QES----------KLIILASGGPQALVNIMRTYTYEK---  201 (529)
T ss_dssp             --HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--HHH----------HHHHHHTTHHHHHHHHHHHCCCHH---
T ss_pred             --HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh--hHH----------HHHHHhcccchHHHHHHHhhhhHH---
Confidence              223334444444333223233334444555543321  110          011223345666677776554432   


Q ss_pred             HHHHHHHHHHHHHhhcChhhhhHHHhhcc
Q psy10488        203 EVKKLFLSDLTLLCNNNRENRRTVLQMSV  231 (462)
Q Consensus       203 ~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~  231 (462)
                       ++.. ..-++..+..+++|++.+.+...
T Consensus       202 -~~~~-~~~~l~~ls~~~~~~~~~~~~g~  228 (529)
T d1jdha_         202 -LLWT-TSRVLKVLSVCSSNKPAIVEAGG  228 (529)
T ss_dssp             -HHHH-HHHHHHHHTTSTTHHHHHHHTTH
T ss_pred             -HHHH-HHHHHhhhhccccccchhhhhhh
Confidence             2222 22234455678888887766543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=1  Score=38.80  Aligned_cols=166  Identities=14%  Similarity=0.169  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccC-CCchhHHhHHHHHHHHHhcCCcccc
Q psy10488         43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTS-QSQLIRLQALKLLGFFLSRSTHKRK  121 (462)
Q Consensus        43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s-~sE~IRl~ALKlLG~fL~~~~~kRK  121 (462)
                      +..++..+.+. ++..+-----.++.-++++.......+-..||+..++++|.+ .+..+|..|+-.|+.+....+..++
T Consensus        60 ~~~ll~~ll~s-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~  138 (264)
T d1xqra1          60 MHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL  138 (264)
T ss_dssp             HHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHH
Confidence            45566655554 444444445556666666555666677778999999999975 5677999999999999876665544


Q ss_pred             ccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHH
Q psy10488        122 YDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELL  201 (462)
Q Consensus       122 ~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~  201 (462)
                       .. ...+.+..|.+-|-.....+-.....+|..++.+....+            ..+..-..+..+..++....+.   
T Consensus       139 -~~-~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~------------~~~~~~~~v~~L~~lL~~~~~~---  201 (264)
T d1xqra1         139 -QF-LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK------------GTLCSMGMVQQLVALVRTEHSP---  201 (264)
T ss_dssp             -HH-HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH------------HHHHHTTHHHHHHHHHTSCCST---
T ss_pred             -HH-HHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH------------HHHHHhhhHHHHHHHHcCCCHH---
Confidence             22 344456666665543333333334444555444422211            2234445677888888643322   


Q ss_pred             HHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488        202 LEVKKLFLSDLTLLCNNNRENRRTVLQ  228 (462)
Q Consensus       202 m~vk~~fL~DLl~L~~~N~eNRrtlLQ  228 (462)
                        +|..-+.=|..|...+++-++...+
T Consensus       202 --~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         202 --FHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              3445455566778888877776653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.78  E-value=1.7  Score=38.30  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=73.9

Q ss_pred             hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHH
Q psy10488         53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYT  132 (462)
Q Consensus        53 ~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfs  132 (462)
                      ..+.+-..+++.-+ .-+++++....+.+...+++..+++++.+++..++..|++.|+.+..+.+..++ ..+. ++...
T Consensus       199 ~~~~~~~~~a~~~l-~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~-~~~~~  275 (434)
T d1q1sc_         199 HNDPEVLADSCWAI-SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ-KVID-AGALA  275 (434)
T ss_dssp             CSCHHHHHHHHHHH-HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHH-TTGGG
T ss_pred             ccccchhhhHHhhh-cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHH-HHHh-ccccc
Confidence            34444445555443 445667777778888889999999999999999999999999988754433222 3222 33444


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcC
Q psy10488        133 LLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQS  195 (462)
Q Consensus       133 lLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs  195 (462)
                      .+.+-|.......-...+.+|-.+...  ++..          ...+....++..+..++.+.
T Consensus       276 ~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~----------~~~i~~~~~i~~li~~l~~~  326 (434)
T d1q1sc_         276 VFPSLLTNPKTNIQKEATWTMSNITAG--RQDQ----------IQQVVNHGLVPFLVGVLSKA  326 (434)
T ss_dssp             GHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHH----------HHHHHHTTCHHHHHHHHHSS
T ss_pred             hHHHhhcccchhhhHHHHHHHhhhccc--cchh----------HHHHhhhhhHHHHHHHHhcc
Confidence            444433333322233333444443321  1111          11233445677777777643