Psyllid ID: psy10538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MIMLSKFFNKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKDG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHcHHHHHccccEEEccccccccccHHHHccccccEEEccccccccHHHHHHHHHcccccccHHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEcccccccccccEEEccccccccccHHHHHHcccccEEccccccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccccccHcHcHHHccHHcccccccccccHHHHHHcHHHHHHcHHHHHcHHHHHHHHcccccccccccHHHHHHHcccEEEccccccccccHHHcccccccccccHHHHHHHHHHcEEEcccccccHccHHHHHHHcccEEEccccccccccHHHHHHccccEEEccccccccccHHHcccccccccccHHHHHHHHHccEEEcccccccccccccHHHHHHccccEEEccccccccccHHHHHcccccEEEccccccccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MIMLSKFFNKELSSHLfrgkisedtinslcdggdvtshtsrswsrnaSSIREYLCHKTYLAAEEAFNEWFHYynstkprgppeinedaayseRVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRlrklglsdneihrlppeiqnfENLVELdvsrngcnrqveyvdkrhcslpnvpeDVLRYFRSLEELLLDAnhirdlpknylDFFRLNRlrklglsdneihrlppeiqnfENLVELdvsrnapsnvdsSMVYLKLGRKDG
Flexible Loop (DISEMBL)
MIMLSKFFNKELSSHLFRGKISEDTINSlcdggdvtshtsrswsrnasSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLldanhirdlpknfFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEyvdkrhcslpnvPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELdvsrnapsnvdssmvylklgrkdg
Low Complexity Region (SEG)
MIMLSKFFNKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKDG
Disordered region (IsUnstruct)
**************HLFRGKISEDTINSLCDGGDV*******W**NASSIREYLCHKTYLAAEEAFNEWFHYYNS******************VLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL************************
Disordered Region (DISOPRED)
*IMLSKFFNKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD*
Disordered Region (DISEMBL)
MIMLSKFFNKELSSHLFRGKISEDTINSLCDGGD************ASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKDG
Disordered Region (DISPRO)
MIMLSKFFNKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMLSKFFNKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRxxxxxxxxxxxxxxxxxxxxxVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q7KRY7	1851	Protein lap4 OS=Drosophil	yes	N/A	0.336	0.052	0.75	6e-38
Q14160	1630	Protein scribble homolog	yes	N/A	0.333	0.058	0.666	5e-30
Q80U72	1612	Protein scribble homolog	yes	N/A	0.572	0.102	0.415	1e-29
Q4H4B6	1724	Protein scribble homolog	yes	N/A	0.531	0.088	0.421	1e-25
Q80VQ1	524	Leucine-rich repeat-conta	no	N/A	0.576	0.316	0.391	6e-25
Q9BTT6	524	Leucine-rich repeat-conta	no	N/A	0.576	0.316	0.391	1e-24
P70587	1490	Leucine-rich repeat-conta	no	N/A	0.527	0.102	0.345	7e-16
Q80TE7	1490	Leucine-rich repeat-conta	no	N/A	0.527	0.102	0.345	7e-16
Q96NW7	1537	Leucine-rich repeat-conta	no	N/A	0.527	0.098	0.345	8e-16
F1MCA7	1536	Leucine-rich repeat-conta	no	N/A	0.527	0.098	0.339	1e-15

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score =  157 bits (398), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/100 (75%), Positives = 86/100 (86%), Gaps = 3/100 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVE+VDKRHCSLP VPE++LRY R+LEEL LDANHIRDLPKN   FFRL+RLRKLG
Sbjct: 10  GCNRQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKN---FFRLHRLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           LSDNEI RLPP+IQNFENLVELDVSRN   ++   + +L+
Sbjct: 67  LSDNEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQ 106

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.
Drosophila melanogaster (taxid: 7227)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score =  131 bits (330), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/99 (66%), Positives = 74/99 (74%), Gaps = 3/99 (3%)

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
           CNR VE VDKRHCSL  VPE++ RY RSLEELLLDAN +R+LPK    FFRL  LRKLGL
Sbjct: 10  CNRHVESVDKRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPK---PFFRLLNLRKLGL 66

Query: 244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           SDNEI RLPPE+ NF  LVELDVSRN    +  S+ + K
Sbjct: 67  SDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCK 105

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q80U72|SCRIB_MOUSE Protein scribble homolog OS=Mus musculus GN=Scrib PE=1 SV=2

 Score =  130 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 18/183 (9%)

Query: 99  RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
           R  ++ E V +    L++  +++ RY RSLEELLLDAN +R+LPK FFRL  LRKLGLSD
Sbjct: 9   RCNRHVESVDKRHCSLQVVPEEIYRYSRSLEELLLDANQLRELPKPFFRLLNLRKLGLSD 68

Query: 159 NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
           NEI RLPPE+ NF  LVELDVSRN               +P +PE + ++ ++LE     
Sbjct: 69  NEIQRLPPEVANFMQLVELDVSRN--------------DIPEIPESI-KFCKALEIADFS 113

Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
            N +  LP     F +L  L  L L+D  +  LP ++ N  NLV L++  N   ++ +S+
Sbjct: 114 GNPLSRLPDG---FTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLPASL 170

Query: 279 VYL 281
            +L
Sbjct: 171 SFL 173

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q4H4B6|SCRIB_DANRE Protein scribble homolog OS=Danio rerio GN=scrib PE=1 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 18/171 (10%)

Query: 99  RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
           R  ++ E V +    L     ++ RY RSLEELLLDAN +R+LPK FFRL+ LRKLGLSD
Sbjct: 9   RCNRHVESVDKRHCSLTAVPDEIYRYNRSLEELLLDANQLRELPKPFFRLHNLRKLGLSD 68

Query: 159 NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
           NEI +LPP++ NF  LVELD+SRN               +  +PE++ ++ +SLE     
Sbjct: 69  NEIQKLPPDVANFTQLVELDISRN--------------DISEIPENI-KFCQSLEIADFS 113

Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            N +  LP     F +L  L  L L+D  +  LP +I N  NLV L++  N
Sbjct: 114 GNPLTRLPDG---FTQLRGLAHLSLNDVSLQSLPNDIGNLSNLVTLELREN 161

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Regulates the caudal migration of the nVII motor neurons. Required for convergent extension movements during gastrulation.

Danio rerio (taxid: 7955)

>sp|Q80VQ1|LRRC1_MOUSE Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 18/184 (9%)

Query: 99  RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
           R  ++ E + +    L    +++ RY RSLEELLLDAN +R+LP+ FF+L +LRKLGLSD
Sbjct: 9   RCNRHVEAIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSD 68

Query: 159 NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
           NEI RLPPEI NF  LVELDVSRN               +P +PE +  + ++L+     
Sbjct: 69  NEIQRLPPEIANFMQLVELDVSRN--------------DIPEIPESI-AFCKALQVADFS 113

Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
            N +  LP++   F  L  L  L ++D  +  LP  I N  NL  L++  N  + +  S+
Sbjct: 114 GNPLTRLPES---FPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSL 170

Query: 279 VYLK 282
             L+
Sbjct: 171 TQLR 174

Mus musculus (taxid: 10090)

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 18/184 (9%)

Query: 99  RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
           R  ++ E + +    L    +++ RY RSLEELLLDAN +R+LP+ FF+L +LRKLGLSD
Sbjct: 9   RCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSD 68

Query: 159 NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
           NEI RLPPEI NF  LVELDVSRN               +P +PE +  + ++L+     
Sbjct: 69  NEIQRLPPEIANFMQLVELDVSRN--------------EIPEIPESI-SFCKALQVADFS 113

Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
            N +  LP++   F  L  L  L ++D  +  LP  I N  NL  L++  N  + +  S+
Sbjct: 114 GNPLTRLPES---FPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSL 170

Query: 279 VYLK 282
             L+
Sbjct: 171 TQLR 174

Homo sapiens (taxid: 9606)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           L+   K+V  + R+LEEL LDAN I +LPK  F    LRKL + DN++  LP  I +  N
Sbjct: 34  LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSSLPTSIASLVN 93

Query: 174 LVELDVSRNG---------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
           L ELD+S+NG         C + +  ++     +  +P D      +L +L L+   +  
Sbjct: 94  LKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLP-DGFTQLLNLTQLYLNDAFLEF 152

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           LP N   F RL +LR L L +N +  LP  +     L  LD+  N
Sbjct: 153 LPAN---FGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNN 194

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           L+   K+V  + R+LEEL LDAN I +LPK  F    LRKL + DN++  LP  I +  N
Sbjct: 34  LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSSLPTSIASLVN 93

Query: 174 LVELDVSRNG---------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
           L ELD+S+NG         C + +  ++     +  +P D      +L +L L+   +  
Sbjct: 94  LKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLP-DGFTQLLNLTQLYLNDAFLEF 152

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           LP N   F RL +LR L L +N +  LP  +     L  LD+  N
Sbjct: 153 LPAN---FGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNN 194

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           L+   K+V  + R+LEEL LDAN I +LPK  F    LRKL + DN++  LP  I +  N
Sbjct: 34  LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSNLPTTIASLVN 93

Query: 174 LVELDVSRNG---------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
           L ELD+S+NG         C + +  ++     +  +P D      +L +L L+   +  
Sbjct: 94  LKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLP-DGFTQLLNLTQLYLNDAFLEF 152

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           LP N   F RL +LR L L +N +  LP  +     L  LD+  N
Sbjct: 153 LPAN---FGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNN 194

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           L+   K+V  + R+LEEL LDAN I +LPK  F    L+KL + DN++  LP  I +  N
Sbjct: 34  LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALKKLSIPDNDLSNLPTTIASLVN 93

Query: 174 LVELDVSRNG---------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
           L ELD+S+NG         C + +  ++     +  +P D      +L +L L+   +  
Sbjct: 94  LKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLP-DGFTQLLNLTQLYLNDAFLEF 152

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           LP N   F RL +LR L L +N +  LP  +     L  LD+  N
Sbjct: 153 LPAN---FGRLAKLRILELRENHLKTLPKSMHKLAQLERLDLGNN 194

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
345489480	2178	PREDICTED: protein lap4-like [Nasonia vi	0.291	0.038	0.885	3e-38
332023058	2051	Protein lap4 [Acromyrmex echinatior]	0.291	0.040	0.896	4e-38
307180798	2056	Protein lap4 [Camponotus floridanus]	0.291	0.040	0.885	5e-38
340713142	2051	PREDICTED: protein lap4-like isoform 3 [	0.291	0.040	0.873	1e-37
350417073	2050	PREDICTED: protein lap4-like isoform 1 [	0.291	0.040	0.873	1e-37
380015498	2046	PREDICTED: LOW QUALITY PROTEIN: protein	0.291	0.041	0.873	1e-37
350417077	1835	PREDICTED: protein lap4-like isoform 3 [	0.291	0.045	0.873	1e-37
270001100	1562	hypothetical protein TcasGA2_TC011397 [T	0.336	0.062	0.79	1e-37
350417075	1759	PREDICTED: protein lap4-like isoform 2 [	0.291	0.047	0.873	2e-37
340713138	1599	PREDICTED: protein lap4-like isoform 1 [	0.291	0.052	0.873	2e-37

>gi|345489480|ref|XP_001603194.2| PREDICTED: protein lap4-like [Nasonia vitripennis]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/87 (88%), Positives = 82/87 (94%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEYVDKRHCSLP+VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL RLRKLG
Sbjct: 10  GCNRQVEYVDKRHCSLPSVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLTRLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNE+HRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNELHRLPPDIQNFENLVELDVSRN 93

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023058|gb|EGI63323.1| Protein lap4 [Acromyrmex echinatior]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEYVDKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL RLRKLG
Sbjct: 10  GCNRQVEYVDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQRLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180798|gb|EFN68662.1| Protein lap4 [Camponotus floridanus]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/87 (88%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEYVDKRHCSLP +P+D+LRY RSLEELLLDANHIRDLPKN   FFRL RLRKLG
Sbjct: 10  GCNRQVEYVDKRHCSLPCIPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQRLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713142|ref|XP_003395107.1| PREDICTED: protein lap4-like isoform 3 [Bombus terrestris]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEY+DKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL +LRKLG
Sbjct: 10  GCNRQVEYIDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQKLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417073|ref|XP_003491243.1| PREDICTED: protein lap4-like isoform 1 [Bombus impatiens]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEY+DKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL +LRKLG
Sbjct: 10  GCNRQVEYIDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQKLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015498|ref|XP_003691738.1| PREDICTED: LOW QUALITY PROTEIN: protein lap4-like [Apis florea]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEY+DKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL +LRKLG
Sbjct: 10  GCNRQVEYIDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQKLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417077|ref|XP_003491245.1| PREDICTED: protein lap4-like isoform 3 [Bombus impatiens]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEY+DKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL +LRKLG
Sbjct: 10  GCNRQVEYIDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQKLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001100|gb|EEZ97547.1| hypothetical protein TcasGA2_TC011397 [Tribolium castaneum]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 87/100 (87%), Gaps = 3/100 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVE+VDKRHCSLP VPED+LRY RSLEELLLDANHIRDLPKN   FFRL+RLRKLG
Sbjct: 10  GCNRQVEFVDKRHCSLPTVPEDILRYSRSLEELLLDANHIRDLPKN---FFRLHRLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           LSDNEIHRLP +IQNFENLVELDVSRN   ++  S+  L+
Sbjct: 67  LSDNEIHRLPSDIQNFENLVELDVSRNDIPDIPESIGALR 106

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417075|ref|XP_003491244.1| PREDICTED: protein lap4-like isoform 2 [Bombus impatiens]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEY+DKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL +LRKLG
Sbjct: 10  GCNRQVEYIDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQKLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713138|ref|XP_003395105.1| PREDICTED: protein lap4-like isoform 1 [Bombus terrestris] gi|340713140|ref|XP_003395106.1| PREDICTED: protein lap4-like isoform 2 [Bombus terrestris] gi|340713144|ref|XP_003395108.1| PREDICTED: protein lap4-like isoform 4 [Bombus terrestris]

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%), Gaps = 3/87 (3%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           GCNRQVEY+DKRHCSLP VP+D+LRY RSLEELLLDANHIRDLPKN   FFRL +LRKLG
Sbjct: 10  GCNRQVEYIDKRHCSLPCVPDDILRYSRSLEELLLDANHIRDLPKN---FFRLQKLRKLG 66

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRN 269
           LSDNEIHRLPP+IQNFENLVELDVSRN
Sbjct: 67  LSDNEIHRLPPDIQNFENLVELDVSRN 93

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
FB|FBgn0263289	1851	scrib "scribbled" [Drosophila	0.336	0.052	0.75	3.7e-34
UNIPROTKB|F1N0Y1	1611	LOC100295316 "Uncharacterized	0.333	0.059	0.666	3.2e-27
UNIPROTKB|Q14160	1630	SCRIB "Protein scribble homolo	0.333	0.058	0.666	3.3e-27
MGI|MGI:2145950	1612	Scrib "scribbled homolog (Dros	0.333	0.059	0.666	4.1e-27
RGD|1565055	1617	Scrib "scribbled planar cell p	0.333	0.059	0.666	4.1e-27
UNIPROTKB|E1C0D6	1526	E1C0D6 "Uncharacterized protei	0.333	0.062	0.636	1.7e-26
ZFIN|ZDB-GENE-030616-572	1724	scrib "scribbled homolog (Dros	0.326	0.054	0.628	2.5e-26
MGI|MGI:2442313	524	Lrrc1 "leucine rich repeat con	0.625	0.343	0.400	8.7e-24
UNIPROTKB|Q9BTT6	524	LRRC1 "Leucine-rich repeat-con	0.625	0.343	0.400	1.9e-23
MGI|MGI:2676665	1490	Lrrc7 "leucine rich repeat con	0.565	0.109	0.338	4.4e-16

FB|FBgn0263289 scrib "scribbled" [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 3.7e-34, P = 3.7e-34
 Identities = 75/100 (75%), Positives = 86/100 (86%)

Query:   183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
             GCNRQVE+VDKRHCSLP VPE++LRY R+LEEL LDANHIRDLPKN   FFRL+RLRKLG
Sbjct:    10 GCNRQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKN---FFRLHRLRKLG 66

Query:   243 LSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             LSDNEI RLPP+IQNFENLVELDVSRN   ++   + +L+
Sbjct:    67 LSDNEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQ 106

GO:0042048 "olfactory behavior" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0005918 "septate junction" evidence=NAS;IDA;TAS

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=IMP

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=IMP

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS

GO:0016331 "morphogenesis of embryonic epithelium" evidence=TAS

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0007280 "pole cell migration" evidence=NAS

GO:0008406 "gonad development" evidence=NAS

GO:0008105 "asymmetric protein localization" evidence=IMP;TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0051726 "regulation of cell cycle" evidence=NAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0016323 "basolateral plasma membrane" evidence=IDA;TAS

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0045186 "zonula adherens assembly" evidence=IMP

GO:0045571 "negative regulation of imaginal disc growth" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0007472 "wing disc morphogenesis" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0022402 "cell cycle process" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0072002 "Malpighian tubule development" evidence=IMP

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0072089 "stem cell proliferation" evidence=IMP

GO:0048863 "stem cell differentiation" evidence=IMP

GO:0045169 "fusome" evidence=IDA

UNIPROTKB|F1N0Y1 LOC100295316 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 320 (117.7 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 66/99 (66%), Positives = 74/99 (74%)

Query:   184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
             CNR VE VDKRHCSL  VPE++ RY RSLEELLLDAN +R+LPK    FFRL  LRKLGL
Sbjct:    10 CNRHVESVDKRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPK---PFFRLLNLRKLGL 66

Query:   244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             SDNEI RLPPE+ NF  LVELDVSRN    +  S+ + K
Sbjct:    67 SDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCK 105

GO:0071896 "protein localization to adherens junction" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0048488 "synaptic vesicle endocytosis" evidence=IEA

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA

GO:0034750 "Scrib-APC-beta-catenin complex" evidence=IEA

GO:0032863 "activation of Rac GTPase activity" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016080 "synaptic vesicle targeting" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

UNIPROTKB|Q14160 SCRIB "Protein scribble homolog" [Homo sapiens (taxid:9606)]

 Score = 320 (117.7 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 66/99 (66%), Positives = 74/99 (74%)

Query:   184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
             CNR VE VDKRHCSL  VPE++ RY RSLEELLLDAN +R+LPK    FFRL  LRKLGL
Sbjct:    10 CNRHVESVDKRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPK---PFFRLLNLRKLGL 66

Query:   244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             SDNEI RLPPE+ NF  LVELDVSRN    +  S+ + K
Sbjct:    67 SDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCK 105

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0016080 "synaptic vesicle targeting" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0048488 "synaptic vesicle endocytosis" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IMP

GO:0035089 "establishment of apical/basal cell polarity" evidence=IMP

GO:0005911 "cell-cell junction" evidence=IDA

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IDA

GO:0008283 "cell proliferation" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0050918 "positive chemotaxis" evidence=IMP

GO:0031252 "cell leading edge" evidence=IDA

GO:0001921 "positive regulation of receptor recycling" evidence=IMP

GO:0060603 "mammary gland duct morphogenesis" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0016477 "cell migration" evidence=IMP

GO:0032863 "activation of Rac GTPase activity" evidence=IMP

GO:0001843 "neural tube closure" evidence=IMP

GO:0034750 "Scrib-APC-beta-catenin complex" evidence=IDA

GO:0071896 "protein localization to adherens junction" evidence=IMP

MGI|MGI:2145950 Scrib "scribbled homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 319 (117.4 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 66/99 (66%), Positives = 74/99 (74%)

Query:   184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
             CNR VE VDKRHCSL  VPE++ RY RSLEELLLDAN +R+LPK    FFRL  LRKLGL
Sbjct:    10 CNRHVESVDKRHCSLQVVPEEIYRYSRSLEELLLDANQLRELPK---PFFRLLNLRKLGL 66

Query:   244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             SDNEI RLPPE+ NF  LVELDVSRN    +  S+ + K
Sbjct:    67 SDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCK 105

GO:0001843 "neural tube closure" evidence=ISO;IMP

GO:0001921 "positive regulation of receptor recycling" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO

GO:0005913 "cell-cell adherens junction" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IMP

GO:0008283 "cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016080 "synaptic vesicle targeting" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0016477 "cell migration" evidence=ISO;IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0032863 "activation of Rac GTPase activity" evidence=ISO

GO:0034750 "Scrib-APC-beta-catenin complex" evidence=ISO

GO:0035089 "establishment of apical/basal cell polarity" evidence=ISO

GO:0035748 "myelin sheath abaxonal region" evidence=IDA

GO:0042060 "wound healing" evidence=IGI

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043615 "astrocyte cell migration" evidence=ISO

GO:0045930 "negative regulation of mitotic cell cycle" evidence=ISO

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0050918 "positive chemotaxis" evidence=ISO;IMP

GO:0060561 "apoptotic process involved in morphogenesis" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IMP

GO:0071896 "protein localization to adherens junction" evidence=ISO

RGD|1565055 Scrib "scribbled planar cell polarity protein" [Rattus norvegicus (taxid:10116)]

 Score = 319 (117.4 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 66/99 (66%), Positives = 74/99 (74%)

Query:   184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
             CNR VE VDKRHCSL  VPE++ RY RSLEELLLDAN +R+LPK    FFRL  LRKLGL
Sbjct:    10 CNRHVESVDKRHCSLQVVPEEIYRYSRSLEELLLDANQLRELPK---PFFRLLNLRKLGL 66

Query:   244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             SDNEI RLPPE+ NF  LVELDVSRN    +  S+ + K
Sbjct:    67 SDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCK 105

GO:0001843 "neural tube closure" evidence=ISO

GO:0001921 "positive regulation of receptor recycling" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO;IDA

GO:0005913 "cell-cell adherens junction" evidence=ISO

GO:0008105 "asymmetric protein localization" evidence=ISO

GO:0008283 "cell proliferation" evidence=ISO

GO:0016080 "synaptic vesicle targeting" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016331 "morphogenesis of embryonic epithelium" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0016477 "cell migration" evidence=ISO

GO:0032863 "activation of Rac GTPase activity" evidence=ISO

GO:0034750 "Scrib-APC-beta-catenin complex" evidence=ISO

GO:0035089 "establishment of apical/basal cell polarity" evidence=ISO

GO:0035748 "myelin sheath abaxonal region" evidence=ISO

GO:0042060 "wound healing" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043615 "astrocyte cell migration" evidence=IMP

GO:0045930 "negative regulation of mitotic cell cycle" evidence=ISO

GO:0048488 "synaptic vesicle endocytosis" evidence=ISO

GO:0050918 "positive chemotaxis" evidence=ISO

GO:0060561 "apoptotic process involved in morphogenesis" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=ISO

GO:0071896 "protein localization to adherens junction" evidence=ISO

GO:0031252 "cell leading edge" evidence=ISO

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

UNIPROTKB|E1C0D6 E1C0D6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 63/99 (63%), Positives = 74/99 (74%)

Query:   184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
             CNR VE +D+RHCSL  VPE++ RY RSLEELLLDAN +R+LPK    FFRL  LRKLGL
Sbjct:    11 CNRHVEALDRRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPK---PFFRLLNLRKLGL 67

Query:   244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             SDNEI RLPPE+ NF  LVELD+SRN    +  S+ + K
Sbjct:    68 SDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCK 106

GO:0001843 "neural tube closure" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016080 "synaptic vesicle targeting" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0032863 "activation of Rac GTPase activity" evidence=IEA

GO:0034750 "Scrib-APC-beta-catenin complex" evidence=IEA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IEA

GO:0048488 "synaptic vesicle endocytosis" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0071896 "protein localization to adherens junction" evidence=IEA

ZFIN|ZDB-GENE-030616-572 scrib "scribbled homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/97 (62%), Positives = 75/97 (77%)

Query:   184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
             CNR VE VDKRHCSL  VP+++ RY RSLEELLLDAN +R+LPK    FFRL+ LRKLGL
Sbjct:    10 CNRHVESVDKRHCSLTAVPDEIYRYNRSLEELLLDANQLRELPK---PFFRLHNLRKLGL 66

Query:   244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY 280
             SDNEI +LPP++ NF  LVELD+SRN  S +  ++ +
Sbjct:    67 SDNEIQKLPPDVANFTQLVELDISRNDISEIPENIKF 103

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0014021 "secondary neural tube formation" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0016020 "membrane" evidence=IEA;IDA

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0045930 "negative regulation of mitotic cell cycle" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0050918 "positive chemotaxis" evidence=ISS

GO:0005913 "cell-cell adherens junction" evidence=ISS

GO:0016337 "cell-cell adhesion" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=ISS

GO:0032863 "activation of Rac GTPase activity" evidence=ISS

GO:0031252 "cell leading edge" evidence=ISS

GO:0035089 "establishment of apical/basal cell polarity" evidence=ISS

GO:0060561 "apoptotic process involved in morphogenesis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

MGI|MGI:2442313 Lrrc1 "leucine rich repeat containing 1" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 81/202 (40%), Positives = 108/202 (53%)

Query:    99 RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
             R  ++ E + +    L    +++ RY RSLEELLLDAN +R+LP+ FF+L +LRKLGLSD
Sbjct:     9 RCNRHVEAIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSD 68

Query:   159 NEIHRLPPEIQNFENLVELDVSRNG----------CNRQVEYVDKRHCSLPNVPEDVLRY 208
             NEI RLPPEI NF  LVELDVSRN           C + ++  D     L  +PE     
Sbjct:    69 NEIQRLPPEIANFMQLVELDVSRNDIPEIPESIAFC-KALQVADFSGNPLTRLPES---- 123

Query:   209 FRSLEELL-LDANHI--RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELD 265
             F  L+ L  L  N I  + LP+N  + + L  L    L +N +  LP  +     L ELD
Sbjct:   124 FPELQNLTCLSVNDISLQSLPENIGNLYNLASLE---LRENLLTYLPDSLTQLRRLEELD 180

Query:   266 VSRNAPSNVDSSMVYLKLGRKD 287
             +  N   N+  S+  L L  KD
Sbjct:   181 LGNNEIYNLPESIGAL-LHLKD 201

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9BTT6 LRRC1 "Leucine-rich repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 276 (102.2 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 81/202 (40%), Positives = 108/202 (53%)

Query:    99 RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
             R  ++ E + +    L    +++ RY RSLEELLLDAN +R+LP+ FF+L +LRKLGLSD
Sbjct:     9 RCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSD 68

Query:   159 NEIHRLPPEIQNFENLVELDVSRNG----------CNRQVEYVDKRHCSLPNVPEDVLRY 208
             NEI RLPPEI NF  LVELDVSRN           C + ++  D     L  +PE     
Sbjct:    69 NEIQRLPPEIANFMQLVELDVSRNEIPEIPESISFC-KALQVADFSGNPLTRLPES---- 123

Query:   209 FRSLEELL-LDANHI--RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELD 265
             F  L+ L  L  N I  + LP+N  + + L  L    L +N +  LP  +     L ELD
Sbjct:   124 FPELQNLTCLSVNDISLQSLPENIGNLYNLASLE---LRENLLTYLPDSLTQLRRLEELD 180

Query:   266 VSRNAPSNVDSSMVYLKLGRKD 287
             +  N   N+  S+  L L  KD
Sbjct:   181 LGNNEIYNLPESIGAL-LHLKD 201

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:2676665 Lrrc7 "leucine rich repeat containing 7" [Mus musculus (taxid:10090)]

 Score = 215 (80.7 bits), Expect = 4.4e-16, P = 4.4e-16
 Identities = 60/177 (33%), Positives = 90/177 (50%)

Query:   104 EEVVA--EWTS-KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNE 160
             EE+++  +++   L+   K+V  + R+LEEL LDAN I +LPK  F    LRKL + DN+
Sbjct:    21 EEIISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDND 80

Query:   161 IHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHC------SLPNVPE--DVLRYFRSL 212
             +  LP  I +  NL ELD+S+NG     E +    C      S+  + +  D      +L
Sbjct:    81 LSSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFTQLLNL 140

Query:   213 EELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
              +L L+   +  LP N   F RL +LR L L +N +  LP  +     L  LD+  N
Sbjct:   141 TQLYLNDAFLEFLPAN---FGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNN 194

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0010976 "positive regulation of neuron projection development" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030175 "filopodium" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	288
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam04121	685	pfam04121, Nup84_Nup100, Nuclear pore protein 84 /	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
            +L+EL L  N I  LP     L  L+ L LS N++  LP  + N  NL  LD+S N   
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-- 197

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                       + ++P ++     +LEEL L  N I +L         L  L  L LS+
Sbjct: 198 ------------ISDLPPEIELL-SALEELDLSNNSIIELL---SSLSNLKNLSGLELSN 241

Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
           N++  LP  I N  NL  LD+S N  S++ S      L
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNL 279

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 19/153 (12%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF-ENLVELDVSRNGCN 185
            L  L L+ N +R        L  L  L L +N I  +PP I     NL ELD+S N   
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--- 150

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                       + ++P   LR   +L+ L L  N + DLPK   +   L+ L  L LS 
Sbjct: 151 -----------KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSN---LSNLNNLDLSG 195

Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
           N+I  LPPEI+    L ELD+S N+   + SS+
Sbjct: 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSL 228

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 19/154 (12%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           LR   +L+ L L  N + DLPK    L+ L  L LS N+I  LPPEI+    L ELD+S 
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N     +                 L   ++L  L L  N + DLP++      L+ L  L
Sbjct: 219 NSIIELL---------------SSLSNLKNLSGLELSNNKLEDLPESI---GNLSNLETL 260

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
            LS+N+I  +   + +  NL ELD+S N+ SN  
Sbjct: 261 DLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 127 SLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
           +L+ L L  N +  +P   F  L  L+ L LS N +  + PE      +L  LD+S N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
           +L+ L L  N +  +P     F  L  L+ L LS N +  + PE      +L  LD+S N
Sbjct: 1   NLKSLDLSNNRLTVIPDGA--FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|217909 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 21/90 (23%)

Query: 48  SSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV 107
            SIRE L ++  +   +A+NEW     +                     ES+    E  +
Sbjct: 537 LSIRELLQYRALIEGLDAYNEWEKLLKA--------------------SESKELNSESNL 576

Query: 108 AEWTSKLKLYSKDVLRYFRS-LEELLLDAN 136
             W SKL+ +SK   +   + L    L  N
Sbjct: 577 PSWESKLQEFSKTTRKLIYNFLVFKPLTEN 606

Nup84p forms a complex with five proteins, of which Nup120p, Nup85p, Sec13p, and a Sec13p homologues. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis. Length = 685

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 150 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY 208
            L+ L LS+N +  +P    +   NL  LD+S N              +L ++  +    
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN--------------NLTSISPEAFSG 46

Query: 209 FRSLEELLLDANHI 222
             SL  L L  N++
Sbjct: 47  LPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 24/149 (16%)

Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNG 183
           RSL  + L  N    +LP  F +L  +  L +S+N +  R+     +  +L  L ++RN 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN- 462

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRS--LEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
                    K    LP+        F S  LE L L  N              L+ L +L
Sbjct: 463 ---------KFFGGLPD-------SFGSKRLENLDLSRNQFSGAVPR--KLGSLSELMQL 504

Query: 242 GLSDNEIH-RLPPEIQNFENLVELDVSRN 269
            LS+N++   +P E+ + + LV LD+S N
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 43/210 (20%)

Query: 86  EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANH-------I 138
           E A      L   ++ + E          K  +   LR   SL+EL L  N        +
Sbjct: 13  ERATELLPKLLCLQVLRLEGNTLGE-EAAKALAS-ALRPQPSLKELCLSLNETGRIPRGL 70

Query: 139 RDLPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELDVSRNGCNRQVEYVDK 193
           + L +   +   L++L LSDN +       L   +++  +L EL ++ NG       +  
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS-SLQELKLNNNG-------LGD 122

Query: 194 RH-----CSLPNVPEDV--------LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
           R        L ++P  +             S E L       RDL +  L+    N    
Sbjct: 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE--LN-LANN---- 175

Query: 241 LGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
            G+ D  I  L   ++   NL  LD++ N 
Sbjct: 176 -GIGDAGIRALAEGLKANCNLEVLDLNNNG 204

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
            ++ +D  +  L  +P+   +   +L+ L L  N++  +      F  L  LR L LS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE--AFSGLPSLRSLDLSGN 58

Query: 247 EI 248
            +
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 20/146 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN 185
           SL+ L L  N       + F   RL  L LS N+    +P ++ +   L++L +S N   
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN--- 509

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLS 244
                       L     D L   + L  L L  N +   +P ++ +      L +L LS
Sbjct: 510 -----------KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM---PVLSQLDLS 555

Query: 245 DNEIH-RLPPEIQNFENLVELDVSRN 269
            N++   +P  + N E+LV++++S N
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 36/158 (22%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
             LR  R L+EL        +L  N          G+ D  I  L   ++   NL  LD+
Sbjct: 159 KALRANRDLKEL--------NLANN----------GIGDAGIRALAEGLKANCNLEVLDL 200

Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD---FFRLN 236
           + NG   +         S      + L   +SLE L L  N++ D     L         
Sbjct: 201 NNNGLTDE-------GASA---LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250

Query: 237 RLRKLGLSDNEIHRLPPE-----IQNFENLVELDVSRN 269
            L  L LS N+I     +     +   E+L+ELD+  N
Sbjct: 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG0444|consensus	1255		99.91
KOG4194|consensus	873		99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
KOG0472|consensus	565		99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG4194|consensus	873		99.88
KOG0444|consensus	1255		99.86
KOG0472|consensus	565		99.82
KOG0617|consensus	264		99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
KOG0617|consensus	264		99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
KOG0618|consensus	1081		99.68
KOG0618|consensus	1081		99.64
KOG4237|consensus	498		99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.61
KOG4237|consensus	498		99.47
KOG0532|consensus	722		99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
KOG0532|consensus	722		99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
KOG1259|consensus	490		99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
KOG3207|consensus	505		99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1909|consensus	382		99.08
KOG1259|consensus	490		98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG0531|consensus	414		98.79
KOG1909|consensus	382		98.76
KOG0531|consensus	414		98.75
KOG3207|consensus	505		98.71
KOG2982|consensus	418		98.71
KOG1859|consensus	1096		98.68
PLN03150	623	hypothetical protein; Provisional	98.65
PLN03150	623	hypothetical protein; Provisional	98.62
KOG4579|consensus	177		98.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.52
KOG4658|consensus	889		98.38
KOG1859|consensus	1096		98.37
KOG1644|consensus	233		98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.22
KOG4579|consensus	177		98.18
PRK15386	426	type III secretion protein GogB; Provisional	98.09
KOG4658|consensus	889		97.96
KOG2120|consensus	419		97.92
KOG1644|consensus	233		97.77
KOG2120|consensus	419		97.69
KOG2982|consensus	418		97.57
KOG3665|consensus	699		97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.46
KOG2123|consensus	388		97.2
KOG3665|consensus	699		97.06
KOG2123|consensus	388		97.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.51
KOG4308|consensus	478		96.42
KOG2739|consensus	260		96.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.63
KOG2739|consensus	260		95.61
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.09
smart00370	26	LRR Leucine-rich repeats, outliers.	95.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.99
KOG0473|consensus	326		94.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.46
smart00370	26	LRR Leucine-rich repeats, outliers.	93.46
KOG0473|consensus	326		91.25
KOG4308|consensus	478		88.13
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.59
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.36
KOG3864|consensus	221		80.58

>KOG0444|consensus

Probab=99.91  E-value=7.3e-27  Score=210.38  Aligned_cols=159  Identities=14%  Similarity=0.103  Sum_probs=116.9

Q ss_pred             chhhhhhhhhccccccc-cccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccCccc------
Q psy10538          2 IMLSKFFNKELSSHLFR-GKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNE------   68 (288)
Q Consensus         2 ~~~~~~~~~~ls~~~~~-g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~------   68 (288)
                      .+++.--+.|+|.|.|+ +.+|.++.++      -++...+...+  +-++.+.+|+.+..+++++.++.....      
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vP--eEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVP--EELSRLQKLEHLSMAHNQLISVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhCh--HHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence            35666778999999999 5789887766      34434444443  345667777788888887766322111      


Q ss_pred             -e-EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCC
Q psy10538         69 -W-FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANH  137 (288)
Q Consensus        69 -~-l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~  137 (288)
                       . ....+-.-+-+|+.++.+..|+.+||++|+++..|+.+-         .+.|++.+||...|.++..|-.||+++|+
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence             1 111111223489999999999999999999999886543         56788899999999999999999999999


Q ss_pred             CcccCcccccCCCccEEecCCCCCc
Q psy10538        138 IRDLPKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus       138 i~~lp~~~~~l~~L~~L~l~~n~l~  162 (288)
                      +..+|+.+.++.+|++|.+++|.+.
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhh
Confidence            9988888888888888888888653

>KOG4194|consensus

Probab=99.90  E-value=1.4e-24  Score=194.14  Aligned_cols=231  Identities=22%  Similarity=0.281  Sum_probs=193.2

Q ss_pred             ccccEEeeCCCccccccCc--cc-----eEEecCCCCCCCCccccC-CCCccEEEcCCCCccchhh----------HHHh
Q psy10538         48 SSIREYLCHKTYLAAEEAF--NE-----WFHYYNSTKPRGPPEINE-DAAYSERVLHESRLQQYEE----------VVAE  109 (288)
Q Consensus        48 ~~L~~l~~~~~~l~~l~~~--~~-----~l~~~~~~~~~lp~~l~~-l~~l~~l~l~~n~l~~l~~----------~~~~  109 (288)
                      ..++.++++.|.++.++..  +.     -+.+.+|.++.+|+..+. ++.|+.|+|..|+++-...          .+..
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            5678888888888774321  11     277888899999976666 9999999999999875432          2335


Q ss_pred             hcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccC-ccccCCCCCcEEEccCCCCC--
Q psy10538        110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNGCN--  185 (288)
Q Consensus       110 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~--  185 (288)
                      -.|++..+.+.+|-.+.++++|++..|+++++.. ++..++.|+.|++++|.|+.++ +.+....+|++|++++|.|+  
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            5788999999999999999999999999998855 7778999999999999999874 55777789999999999988  


Q ss_pred             --------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCccccccCCCCccEEEccCCCCccCCc-cc
Q psy10538        186 --------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EI  255 (288)
Q Consensus       186 --------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l  255 (288)
                              .+|++|.|++|+++.+....|..+++|+.||+.+|.++ .+.+...++.++++|+.|++.+|++..+|+ .|
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf  412 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF  412 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence                    38999999999999999999999999999999999998 343332338889999999999999999986 69


Q ss_pred             cCCCCCcEEECcCCCCCCcCccc
Q psy10538        256 QNFENLVELDVSRNAPSNVDSSM  278 (288)
Q Consensus       256 ~~~~~L~~L~L~~N~l~~ip~~~  278 (288)
                      .++++|++|||.+|.|.+|....
T Consensus       413 sgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             ccCcccceecCCCCcceeecccc
Confidence            99999999999999998765543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=2.3e-22  Score=201.17  Aligned_cols=206  Identities=21%  Similarity=0.304  Sum_probs=155.4

Q ss_pred             CCCccccCCCCccEEEcCCCCccc-hhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCccccc
Q psy10538         79 RGPPEINEDAAYSERVLHESRLQQ-YEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR  147 (288)
Q Consensus        79 ~lp~~l~~l~~l~~l~l~~n~l~~-l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~  147 (288)
                      .+|..++.+++|+.+++++|++.. +++.+.         ...+.+....+..+..+++|+.|++++|+++ .+|..+..
T Consensus       347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  426 (968)
T PLN00113        347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK  426 (968)
T ss_pred             cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence            456666666667777777766653 222221         2234444455666777888888888888887 66777888


Q ss_pred             CCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538        148 LNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL  217 (288)
Q Consensus       148 l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  217 (288)
                      ++.|+.|++++|.++ .+|..+..+++|+.|++++|.+.         .+|++|++++|+++...+..+..+++|+.|++
T Consensus       427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  506 (968)
T PLN00113        427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL  506 (968)
T ss_pred             CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence            888888888888877 44555667788888888888765         36888999999988666666777888999999


Q ss_pred             ccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538        218 DANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD  287 (288)
Q Consensus       218 ~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~  287 (288)
                      ++|.++ .+|..   ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|++. .+|..+..++.++.+
T Consensus       507 s~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        507 SENKLSGEIPDE---LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             cCCcceeeCChH---HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            999887 56766   788889999999999988 67778888899999999999988 788888877766654

>KOG0472|consensus

Probab=99.88  E-value=8e-25  Score=188.14  Aligned_cols=138  Identities=21%  Similarity=0.269  Sum_probs=111.1

Q ss_pred             ccCCccccEEeeCCCccccccCc-c-----ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhH--------HHh
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAF-N-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEV--------VAE  109 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~-~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~--------~~~  109 (288)
                      +.++.++..+....+++..+... .     .-+++..|.++.+|+.++.+..|..+++..|++..+|+.        +-.
T Consensus       156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~  235 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV  235 (565)
T ss_pred             HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence            34444555555555555442211 0     126666777788999999999999999999999988854        223


Q ss_pred             hcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCC
Q psy10538        110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN  182 (288)
Q Consensus       110 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n  182 (288)
                      ..+.++.++.+....++++.+||++.|+++++|+.+.-+.+|+.||+++|.++.+|.+++++ .|+.|.+.||
T Consensus       236 g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  236 GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence            45777788888888999999999999999999999999999999999999999999999999 9999999999

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=5.3e-22  Score=198.56  Aligned_cols=277  Identities=20%  Similarity=0.208  Sum_probs=194.1

Q ss_pred             hhhhhccccccccccCcccccc----ccCC--CCcccccccccccCCccccEEeeCCCccccccC-----ccceEEecCC
Q psy10538          7 FFNKELSSHLFRGKISEDTINS----LCDG--GDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-----FNEWFHYYNS   75 (288)
Q Consensus         7 ~~~~~ls~~~~~g~~p~~~~~~----~~~~--~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-----~~~~l~~~~~   75 (288)
                      ....+|+.+++.|.+|..+..+    .++.  ..+..........++++|+.++++.+++++...     ....+++.++
T Consensus        71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n  150 (968)
T PLN00113         71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN  150 (968)
T ss_pred             EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCC
Confidence            3456677777777776554433    2222  222211111234467788888888777653111     1233556565


Q ss_pred             CCC-CCCccccCCCCccEEEcCCCCccc-hhhHH---------HhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCc
Q psy10538         76 TKP-RGPPEINEDAAYSERVLHESRLQQ-YEEVV---------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPK  143 (288)
Q Consensus        76 ~~~-~lp~~l~~l~~l~~l~l~~n~l~~-l~~~~---------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~  143 (288)
                      .+. .+|..++.+++|++|++++|.+.. +|..+         ....+.+....|..+..+++|++|++++|+++ .+|.
T Consensus       151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  230 (968)
T PLN00113        151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY  230 (968)
T ss_pred             cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence            554 577788888889999998888753 33322         12344555555667788888888888888887 6777


Q ss_pred             ccccCCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCc
Q psy10538        144 NFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSL  212 (288)
Q Consensus       144 ~~~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L  212 (288)
                      .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.          .+|++|++++|.+....+..+..+++|
T Consensus       231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            8888888888888888877 56777888888888888888765          367888888888876666666678888


Q ss_pred             ceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccC
Q psy10538        213 EELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRK  286 (288)
Q Consensus       213 ~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~  286 (288)
                      +.|++++|.++ .+|..   +..+++|+.|++++|.++ .+|..++.+++|+.|++++|++. .+|..++.++.++.
T Consensus       311 ~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  384 (968)
T PLN00113        311 EILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK  384 (968)
T ss_pred             cEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence            88888888887 45655   778888888888888887 77878888888888888888887 67777776655543

>KOG4194|consensus

Probab=99.88  E-value=1.8e-23  Score=187.17  Aligned_cols=262  Identities=22%  Similarity=0.273  Sum_probs=160.5

Q ss_pred             ccccccccccCccccccccCCCCcccccccccccCCccccEEeeCCCccccccCc------cceEEecCCCCCCCC-ccc
Q psy10538         12 LSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF------NEWFHYYNSTKPRGP-PEI   84 (288)
Q Consensus        12 ls~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~------~~~l~~~~~~~~~lp-~~l   84 (288)
                      ++...+.|..|.....+.++-..+. ..+.+++.++.+|+++++..|.++..+.+      ...+.+.+|.++++- ..+
T Consensus        67 ~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L  145 (873)
T KOG4194|consen   67 IDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL  145 (873)
T ss_pred             ccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH
Confidence            3455667778887766655544443 33457788899999999988888763322      123555555555543 345


Q ss_pred             cCCCCccEEEcCCCCccchhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccE
Q psy10538         85 NEDAAYSERVLHESRLQQYEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRK  153 (288)
Q Consensus        85 ~~l~~l~~l~l~~n~l~~l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~  153 (288)
                      ..++.|+.+||+.|.+..++..          +....|.+..+..+.|..+.+|..|.+++|+|+.+|. .|.++++|+.
T Consensus       146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence            5555666666666665554321          2234455556666667777777777777777777665 5555777777


Q ss_pred             EecCCCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcc
Q psy10538        154 LGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI  222 (288)
Q Consensus       154 L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  222 (288)
                      |++..|++..+ -..|..+++++.+.+.+|+|.          .++++|+|+.|+++.+..+++.++++|+.|+++.|.|
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            77777776644 334555666666666666554          2666666666666666666666666666666666666


Q ss_pred             cccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCc
Q psy10538        223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       223 ~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      +.+...  +|...++|+.|+|++|+|+++++ .|..+..|+.|.|++|.++.+.+
T Consensus       306 ~rih~d--~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  306 QRIHID--SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE  358 (873)
T ss_pred             heeecc--hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence            655433  15666666666666666666554 35555556666666665554443

>KOG0444|consensus

Probab=99.86  E-value=9.1e-24  Score=190.57  Aligned_cols=240  Identities=16%  Similarity=0.194  Sum_probs=189.7

Q ss_pred             ccCCccccEEeeCCCcccccc----Ccc--ceEEecCCCCCCCCcccc-CCCCccEEEcCCCCccchhhHHH--------
Q psy10538         44 SRNASSIREYLCHKTYLAAEE----AFN--EWFHYYNSTKPRGPPEIN-EDAAYSERVLHESRLQQYEEVVA--------  108 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~----~~~--~~l~~~~~~~~~lp~~l~-~l~~l~~l~l~~n~l~~l~~~~~--------  108 (288)
                      +.++..|+.++++.+.+...+    ...  -.+++++|.+.++|..++ +++.|-.|||++|++..+|....        
T Consensus        99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL  178 (1255)
T ss_pred             hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence            445566666666666654421    111  125566666666664433 46666667777777776665432        


Q ss_pred             -hhcCCceecchHHhhcCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC
Q psy10538        109 -EWTSKLKLYSKDVLRYFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN  185 (288)
Q Consensus       109 -~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~  185 (288)
                       ...|.+..+.-..+..+++|++|.+++.+=+  .+|.++..+.+|..+|++.|.+..+|.++..+.+|+.|++++|+|+
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence             2233333444444556777888888888755  7899999999999999999999999999999999999999999988


Q ss_pred             ---------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc--ccCCccccccCCCCccEEEccCCCCccCCcc
Q psy10538        186 ---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR--DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE  254 (288)
Q Consensus       186 ---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~  254 (288)
                               .+++.|+++.|.++.+|..+.. +++|+.|.+.+|+++  .+|.+   ++.+..|+.+..++|.+.-+|..
T Consensus       259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aanN~LElVPEg  334 (1255)
T KOG0444|consen  259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAANNKLELVPEG  334 (1255)
T ss_pred             eeeccHHHHhhhhhhccccchhccchHHHhh-hHHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhccccccCchh
Confidence                     3899999999999999988766 899999999999987  89998   99999999999999999999999


Q ss_pred             ccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        255 IQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       255 l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      ++.|..|+.|.|++|++-++|+.+.-|+-+++|
T Consensus       335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL  367 (1255)
T ss_pred             hhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence            999999999999999999999999988887765

>KOG0472|consensus

Probab=99.82  E-value=1.2e-22  Score=174.90  Aligned_cols=213  Identities=26%  Similarity=0.340  Sum_probs=147.6

Q ss_pred             EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHh---------hcCCceecchHHhhcCcCCcEEEcccCCCcc
Q psy10538         70 FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAE---------WTSKLKLYSKDVLRYFRSLEELLLDANHIRD  140 (288)
Q Consensus        70 l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~---------~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~  140 (288)
                      +....+.+.++|++++.+..++.++.++|++..+|+.+..         ..+.+..++++ +..+-.++.++..+|++++
T Consensus        73 l~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~s  151 (565)
T KOG0472|consen   73 LNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISS  151 (565)
T ss_pred             EEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccccccc
Confidence            3344444455666666666666666666666666554331         13344444433 3445566666666666666


Q ss_pred             cCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCC
Q psy10538        141 LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRS  211 (288)
Q Consensus       141 lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~  211 (288)
                      +|+++..+.++..+++.+|.+.++|++...|+.|++++...|.++         .+|+.|+|..|++..+|.  |.+++.
T Consensus       152 lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~  229 (565)
T KOG0472|consen  152 LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSL  229 (565)
T ss_pred             CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHH
Confidence            666666666666666666666666665545666666666666443         255666666668888873  566888


Q ss_pred             cceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCCC
Q psy10538        212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKDG  288 (288)
Q Consensus       212 L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~~  288 (288)
                      |+++.++.|.++.+|...  ..++.++.+||++.|+++++|.++..+.+|++||+++|.|+.+|.+++++ +++.++
T Consensus       230 L~Elh~g~N~i~~lpae~--~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  230 LKELHVGENQIEMLPAEH--LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA  303 (565)
T ss_pred             HHHHHhcccHHHhhHHHH--hcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence            999999999999888873  55888999999999999999998888889999999999999999999988 776653

>KOG0617|consensus

Probab=99.82  E-value=2.8e-22  Score=154.58  Aligned_cols=169  Identities=27%  Similarity=0.430  Sum_probs=148.1

Q ss_pred             cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCc
Q psy10538         83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus        83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~  162 (288)
                      .+..+.+.+.+.+++|++.              .++|. ++.+.+|+.|++.+|+|+++|..+.++++|+.|+++.|++.
T Consensus        28 gLf~~s~ITrLtLSHNKl~--------------~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT--------------VVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN   92 (264)
T ss_pred             cccchhhhhhhhcccCcee--------------ecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh
Confidence            3566777778888887766              44443 56788999999999999999999999999999999999999


Q ss_pred             ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCC--CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccE
Q psy10538        163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP--NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK  240 (288)
Q Consensus       163 ~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~  240 (288)
                      .+|..|++++.|+.|++++|              ++.  .+|...|. ++.|+.|++++|.+.-+|+.   ++.+++|+.
T Consensus        93 ~lprgfgs~p~levldltyn--------------nl~e~~lpgnff~-m~tlralyl~dndfe~lp~d---vg~lt~lqi  154 (264)
T KOG0617|consen   93 ILPRGFGSFPALEVLDLTYN--------------NLNENSLPGNFFY-MTTLRALYLGDNDFEILPPD---VGKLTNLQI  154 (264)
T ss_pred             cCccccCCCchhhhhhcccc--------------ccccccCCcchhH-HHHHHHHHhcCCCcccCChh---hhhhcceeE
Confidence            99999999999999998888              555  56777666 89999999999999999998   999999999


Q ss_pred             EEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccc
Q psy10538        241 LGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG  284 (288)
Q Consensus       241 L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~  284 (288)
                      |.++.|.+-++|++++.+..|+.|++.+|+++-+|+.++.+...
T Consensus       155 l~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~  198 (264)
T KOG0617|consen  155 LSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLV  198 (264)
T ss_pred             EeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhh
Confidence            99999999999999999999999999999999999999987654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=3.5e-18  Score=163.19  Aligned_cols=243  Identities=16%  Similarity=0.167  Sum_probs=145.2

Q ss_pred             hhhccccccccccCcc----ccccccCCCCcccccccccccCCccccEEeeCCCccccccCc---cceEEecCCCCCCCC
Q psy10538          9 NKELSSHLFRGKISED----TINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF---NEWFHYYNSTKPRGP   81 (288)
Q Consensus         9 ~~~ls~~~~~g~~p~~----~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~---~~~l~~~~~~~~~lp   81 (288)
                      .++++.+++. .+|..    +..+.+....++..+     ...+.|+.+++++|.++.+...   ...+.+..|.+..+|
T Consensus       205 ~LdLs~~~Lt-sLP~~l~~~L~~L~L~~N~Lt~LP-----~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp  278 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP  278 (788)
T ss_pred             EEEcCCCCCC-cCCcchhcCCCEEEccCCcCCCCC-----CCCCCCcEEEecCCccCcccCcccccceeeccCCchhhhh
Confidence            3466777766 35543    334444444443333     2246677777777777654321   123444455555554


Q ss_pred             ccccCCCCccEEEcCCCCccchhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEe
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG  155 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~  155 (288)
                      ..   ...|+.|++++|++..+|...      ....|.+..++.    ....|+.|++++|.++.+|..   ..+|+.|+
T Consensus       279 ~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~Ld  348 (788)
T PRK15387        279 AL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPTL---PSGLQELS  348 (788)
T ss_pred             hc---hhhcCEEECcCCccccccccccccceeECCCCccccCCC----CcccccccccccCcccccccc---ccccceEe
Confidence            42   234555566666555543211      111223322221    112344455555555544431   24677777


Q ss_pred             cCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcc
Q psy10538        156 LSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY  229 (288)
Q Consensus       156 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~  229 (288)
                      +++|.++.+|..   ..+|+.|++++|++.      .+|+.|++++|.++.+|..    .++|+.|++++|.++.+|.. 
T Consensus       349 LS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~l-  420 (788)
T PRK15387        349 VSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPML-  420 (788)
T ss_pred             cCCCccCCCCCC---CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCcc-
Confidence            777777776653   245666777777655      2678888888888877642    35788888888888888763 


Q ss_pred             ccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccc
Q psy10538        230 LDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVY  280 (288)
Q Consensus       230 ~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~  280 (288)
                           ..+|+.|++++|+|+.+|..+..+++|+.+++++|+++ .+|..+..
T Consensus       421 -----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 -----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             -----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence                 24677888899999988888888889999999999988 55555533

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.3e-17  Score=159.87  Aligned_cols=211  Identities=20%  Similarity=0.255  Sum_probs=129.0

Q ss_pred             ccEEeeCCCccccccC----ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH-------hhcCCceecc
Q psy10538         50 IREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA-------EWTSKLKLYS  118 (288)
Q Consensus        50 L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~-------~~~~~l~~~~  118 (288)
                      ...++++...++.++.    ....+.+.+|.++.+|..+.  .+|+.|++++|+++.+|..+.       ...|.+..++
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP  257 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELP  257 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCccCcCC
Confidence            3455555555554332    22346666677777776554  477788888877776664322       2234444444


Q ss_pred             hHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEE
Q psy10538        119 KDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYV  191 (288)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L  191 (288)
                      ....   .+|+.|++++|+++.+|..+.  ++|+.|++++|.++.+|..+.  ++|+.|++++|.++       .+|+.|
T Consensus       258 ~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L  330 (754)
T PRK15370        258 ERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTL  330 (754)
T ss_pred             hhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceec
Confidence            3322   367777777777777666542  467777777777776665432  35666666666544       356777


Q ss_pred             EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCC
Q psy10538        192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAP  271 (288)
Q Consensus       192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l  271 (288)
                      ++++|.++.+|..+   .++|+.|++++|.++.+|..   +  .++|+.|++++|+++.+|..+.  .+|+.|++++|++
T Consensus       331 ~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~---l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L  400 (754)
T PRK15370        331 EAGENALTSLPASL---PPELQVLDVSKNQITVLPET---L--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNL  400 (754)
T ss_pred             cccCCccccCChhh---cCcccEEECCCCCCCcCChh---h--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCc
Confidence            77777777666543   25677777777777766654   2  2467777777777776666543  2566777777777


Q ss_pred             CCcCcccc
Q psy10538        272 SNVDSSMV  279 (288)
Q Consensus       272 ~~ip~~~~  279 (288)
                      ..+|.++.
T Consensus       401 ~~LP~sl~  408 (754)
T PRK15370        401 VRLPESLP  408 (754)
T ss_pred             ccCchhHH
Confidence            76666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.72  E-value=3.8e-17  Score=156.13  Aligned_cols=213  Identities=22%  Similarity=0.215  Sum_probs=146.3

Q ss_pred             cccEEeeCCCccccccC---ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHH------HhhcCCceecch
Q psy10538         49 SIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSK  119 (288)
Q Consensus        49 ~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~  119 (288)
                      .|+.+++..|+++.+..   ....+++.+|.++.+|..   .+.|+.|++++|.+..++...      ....|.+..++.
T Consensus       223 ~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~  299 (788)
T PRK15387        223 HITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV  299 (788)
T ss_pred             CCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence            56677777777766433   223466666777777643   346677777777777665432      123344444432


Q ss_pred             HHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEc
Q psy10538        120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDK  193 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l  193 (288)
                          .+++|+.|++++|+++.+|..   ...|+.|++++|.++.+|..   ..+|+.|++++|+++      .+|+.|++
T Consensus       300 ----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~L  369 (788)
T PRK15387        300 ----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTLPSELYKLWA  369 (788)
T ss_pred             ----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCCCccCCCCCCCcccceehh
Confidence                235677777777777766542   23566677777777766641   246788888888766      36778888


Q ss_pred             cCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538        194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       194 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                      ++|.++.+|..    .++|+.|++++|.++.+|..      ..+|+.|++++|+++.+|..   ..+|+.|++++|.++.
T Consensus       370 s~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~  436 (788)
T PRK15387        370 YNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR  436 (788)
T ss_pred             hccccccCccc----ccccceEEecCCcccCCCCc------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc
Confidence            88888877642    35788899999999888864      25788999999999988853   3468889999999999


Q ss_pred             cCccccccccccCC
Q psy10538        274 VDSSMVYLKLGRKD  287 (288)
Q Consensus       274 ip~~~~~l~~~~~~  287 (288)
                      +|.+++.++.++.+
T Consensus       437 LP~sl~~L~~L~~L  450 (788)
T PRK15387        437 LPESLIHLSSETTV  450 (788)
T ss_pred             cChHHhhccCCCeE
Confidence            99998888776543

>KOG0617|consensus

Probab=99.70  E-value=3.1e-19  Score=137.82  Aligned_cols=146  Identities=32%  Similarity=0.471  Sum_probs=135.4

Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE  203 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~  203 (288)
                      .+..++.|.+++|+++.+|+.+..+.+|+.|++++|.++++|..+++++.|+.|+++.|              ++..+|.
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn--------------rl~~lpr   96 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN--------------RLNILPR   96 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh--------------hhhcCcc
Confidence            45678889999999999999999999999999999999999999999999999999999              7777776


Q ss_pred             HHHhcCCCcceeecccCccc--ccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccc
Q psy10538        204 DVLRYFRSLEELLLDANHIR--DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYL  281 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~--~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l  281 (288)
                      + |+.++.|+.||+.+|++.  .+|..   |..+..|+.|++++|.+..+|++++++++|+.|.+..|.+-++|..++.+
T Consensus        97 g-fgs~p~levldltynnl~e~~lpgn---ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~l  172 (264)
T KOG0617|consen   97 G-FGSFPALEVLDLTYNNLNENSLPGN---FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL  172 (264)
T ss_pred             c-cCCCchhhhhhccccccccccCCcc---hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHH
Confidence            6 556999999999999998  78987   88999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC
Q psy10538        282 KLGRKD  287 (288)
Q Consensus       282 ~~~~~~  287 (288)
                      +.+|.+
T Consensus       173 t~lrel  178 (264)
T KOG0617|consen  173 TRLREL  178 (264)
T ss_pred             HHHHHH
Confidence            988754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=1.9e-16  Score=151.85  Aligned_cols=192  Identities=25%  Similarity=0.335  Sum_probs=147.7

Q ss_pred             eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH-------hhcCCceecchHHhhcCcCCcEEEcccCCCccc
Q psy10538         69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA-------EWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL  141 (288)
Q Consensus        69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~-------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l  141 (288)
                      -+++.+..++.+|..+.  +.++.|++++|+++.+|..+.       ...|.+..++...   .++|+.|++++|.++.+
T Consensus       182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        182 ELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITEL  256 (754)
T ss_pred             EEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh---hccccEEECcCCccCcC
Confidence            36777777888887663  579999999999998876432       2345555554432   24688888888888888


Q ss_pred             CcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcce
Q psy10538        142 PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEE  214 (288)
Q Consensus       142 p~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  214 (288)
                      |..+.  .+|+.|++++|.++.+|..+.  ++|+.|++++|+++       ..|+.|++++|.++.+|...   .++|+.
T Consensus       257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~  329 (754)
T PRK15370        257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKT  329 (754)
T ss_pred             ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc---ccccee
Confidence            77653  578888888888888877653  47888888888765       25788888888888877643   367899


Q ss_pred             eecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccc
Q psy10538        215 LLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       215 L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~  279 (288)
                      |++++|.++.+|..   +  .++|+.|++++|+++.+|..+  .++|+.|++++|+++.+|+.+.
T Consensus       330 L~Ls~N~Lt~LP~~---l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        330 LEAGENALTSLPAS---L--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             ccccCCccccCChh---h--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH
Confidence            99999999999875   3  378999999999999888755  3689999999999999988654

>KOG0618|consensus

Probab=99.68  E-value=2.2e-18  Score=161.78  Aligned_cols=220  Identities=25%  Similarity=0.338  Sum_probs=161.6

Q ss_pred             ccccEEeeCCCccccccC-----ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH---------hhcCC
Q psy10538         48 SSIREYLCHKTYLAAEEA-----FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA---------EWTSK  113 (288)
Q Consensus        48 ~~L~~l~~~~~~l~~l~~-----~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~---------~~~~~  113 (288)
                      ++++.++.+.+.++.+..     ....++...+.+..+|..++.+.+|+.+...+|++..++..+.         ...+.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE  298 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence            455555555555544222     1223666677777788888888888888888888877664322         33456


Q ss_pred             ceecchHHhhcCcCCcEEEcccCCCcccCccccc-CC-CccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCC-----
Q psy10538        114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LN-RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN-----  185 (288)
Q Consensus       114 l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~-l~-~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~-----  185 (288)
                      ++.+++. ..+++.|++|++..|.|.++|+.+.. +. .+..+..+.|++...|.. -..++.|+.|++.+|.++     
T Consensus       299 l~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p  377 (1081)
T KOG0618|consen  299 LEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP  377 (1081)
T ss_pred             hhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence            6666543 55688888999999998888875443 22 367777777777766643 223566888888888776     


Q ss_pred             -----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCC
Q psy10538        186 -----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN  260 (288)
Q Consensus       186 -----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~  260 (288)
                           ..|+.|+|++|++.++|...+.++..|++|++++|+++.+|..   +..++.|++|..-+|++..+| .+..++.
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t---va~~~~L~tL~ahsN~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT---VANLGRLHTLRAHSNQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH---HHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence                 3789999999999999988888888899999999999988877   777888888888888888888 7778888


Q ss_pred             CcEEECcCCCCC
Q psy10538        261 LVELDVSRNAPS  272 (288)
Q Consensus       261 L~~L~L~~N~l~  272 (288)
                      |+.+|++.|+++
T Consensus       454 L~~lDlS~N~L~  465 (1081)
T KOG0618|consen  454 LKVLDLSCNNLS  465 (1081)
T ss_pred             ceEEecccchhh
Confidence            888888888876

>KOG0618|consensus

Probab=99.64  E-value=1.6e-17  Score=156.03  Aligned_cols=227  Identities=21%  Similarity=0.271  Sum_probs=167.0

Q ss_pred             CccccccccCCCCcccccccccccCCccccEEeeCCCccccc--cCccc----eEEecCCCCCCCCccccCCCCccEEEc
Q psy10538         22 SEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAE--EAFNE----WFHYYNSTKPRGPPEINEDAAYSERVL   95 (288)
Q Consensus        22 p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l--~~~~~----~l~~~~~~~~~lp~~l~~l~~l~~l~l   95 (288)
                      |.++..+.++...+...+  +|+..+.+|+.+....+.++.+  +.+..    .+.+..+.+..+|+.....+.++.|+|
T Consensus       240 p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             cccceeeecchhhhhcch--HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence            444444455555555556  7999999999999999888662  22222    256677788889999999999999999


Q ss_pred             CCCCccchhhHHH-----------hhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEecCCCCCcc
Q psy10538         96 HESRLQQYEEVVA-----------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIHR  163 (288)
Q Consensus        96 ~~n~l~~l~~~~~-----------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~l~~  163 (288)
                      +.|++..+|+...           ...+.+...+...=..++.|+.|++.+|.++ ..-+.+...++|+.|++++|++..
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            9999999887432           1233444443222233567888888888888 333345667888889999998888


Q ss_pred             cCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538        164 LPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG  242 (288)
Q Consensus       164 l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~  242 (288)
                      +|+. +..+..|++|+++||              +++.+|..+. .++.|++|...+|.+..+|.    +..++.|+++|
T Consensus       398 fpas~~~kle~LeeL~LSGN--------------kL~~Lp~tva-~~~~L~tL~ahsN~l~~fPe----~~~l~qL~~lD  458 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGN--------------KLTTLPDTVA-NLGRLHTLRAHSNQLLSFPE----LAQLPQLKVLD  458 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccc--------------hhhhhhHHHH-hhhhhHHHhhcCCceeechh----hhhcCcceEEe
Confidence            8876 567778888888888              8888885544 47889999999999999985    78889999999


Q ss_pred             ccCCCCcc--CCccccCCCCCcEEECcCCC
Q psy10538        243 LSDNEIHR--LPPEIQNFENLVELDVSRNA  270 (288)
Q Consensus       243 l~~n~l~~--~p~~l~~~~~L~~L~L~~N~  270 (288)
                      ++.|.+++  +|... ..++|++||+++|.
T Consensus       459 lS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            99999883  33222 22789999999986

>KOG4237|consensus

Probab=99.63  E-value=8.4e-17  Score=138.67  Aligned_cols=219  Identities=21%  Similarity=0.244  Sum_probs=164.8

Q ss_pred             EEeeCCCcccc----ccCccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhh-----------HHHhhcCCce
Q psy10538         52 EYLCHKTYLAA----EEAFNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEE-----------VVAEWTSKLK  115 (288)
Q Consensus        52 ~l~~~~~~l~~----l~~~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~-----------~~~~~~~~l~  115 (288)
                      .++|+...++.    ++...-.+++..|.++.+|+ .+..+++|+.+||+.|.|..+.+           .+....|+|.
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            45565555544    22222346777777888986 57789999999999999876532           2334458999


Q ss_pred             ecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCC--------
Q psy10538        116 LYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN--------  185 (288)
Q Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~--------  185 (288)
                      +++.++|.++..++.|.+.-|++..++ +.|..++++..|.+.+|.++.++. .+..+..++++-+..|.+-        
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence            999999999999999999999998654 478889999999999999988876 5777888888887777311        


Q ss_pred             ----------------------------------------------------------------CCccEEEccCCCCCCC
Q psy10538        186 ----------------------------------------------------------------RQVEYVDKRHCSLPNV  201 (288)
Q Consensus       186 ----------------------------------------------------------------~~L~~L~l~~n~l~~~  201 (288)
                                                                                      ++|++|+|++|+++.+
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i  289 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI  289 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence                                                                            2778888888888887


Q ss_pred             ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCC
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      ...+|+....+++|.+..|++..+...+  |.++..|+.|+|.+|+|+.+ |..|.....|..|.|-.|++-
T Consensus       290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~--f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  290 EDGAFEGAAELQELYLTRNKLEFVSSGM--FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhcchhhhhhhhcCcchHHHHHHHh--hhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            7777777778888888888887776654  67777888888888888744 445667777788877777653

>PLN03210 Resistant to P

Probab=99.61  E-value=2.2e-14  Score=145.41  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=102.9

Q ss_pred             ccccCCccccEEeeCCCcc--------------ccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHH
Q psy10538         42 SWSRNASSIREYLCHKTYL--------------AAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV  107 (288)
Q Consensus        42 ~~~~~l~~L~~l~~~~~~l--------------~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~  107 (288)
                      ..+.+|.+|+.+..+.+..              ..+.....++.+.++.+..+|..+ ...+|++|++.+|++..+++..
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence            3456677787776654321              112233456788888888888766 5678899999998887765432


Q ss_pred             H---------h-hcCCceecchHHhhcCcCCcEEEcccCC-CcccCcccccCCCccEEecCCC-CCcccCccccCCCCCc
Q psy10538        108 A---------E-WTSKLKLYSKDVLRYFRSLEELLLDANH-IRDLPKNFFRLNRLRKLGLSDN-EIHRLPPEIQNFENLV  175 (288)
Q Consensus       108 ~---------~-~~~~l~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n-~l~~l~~~l~~~~~L~  175 (288)
                      .         . .+..+..++.  +..+++|++|++++|. +..+|..+..+++|+.|++++| .++.+|..+ .+++|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            1         1 1223444432  6677888888888865 5578888888888888888886 455677654 567777


Q ss_pred             EEEccCCC-------CCCCccEEEccCCCCCCCC
Q psy10538        176 ELDVSRNG-------CNRQVEYVDKRHCSLPNVP  202 (288)
Q Consensus       176 ~L~l~~n~-------~~~~L~~L~l~~n~l~~~~  202 (288)
                      .|++++|.       +..+|++|++++|.+..+|
T Consensus       708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             EEeCCCCCCccccccccCCcCeeecCCCcccccc
Confidence            77777763       1235666666666655444

syringae 6; Provisional

>KOG4237|consensus

Probab=99.47  E-value=3.9e-15  Score=128.47  Aligned_cols=190  Identities=19%  Similarity=0.254  Sum_probs=128.4

Q ss_pred             eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Cccccc
Q psy10538         69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR  147 (288)
Q Consensus        69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~  147 (288)
                      .....+..++++|.++  -....++.|..|+|+              .+|+.+|..+++|++||+++|.|+.| |++|..
T Consensus        50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~--------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQIS--------------SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             eEEccCCCcccCcccC--CCcceEEEeccCCcc--------------cCChhhccchhhhceecccccchhhcChHhhhh
Confidence            4556666777888765  334677888887777              55666666666666666666666655 446666


Q ss_pred             CCCccEEecCC-CCCcccCcc-ccCCCC------------------------CcEEEccCCCCC----------CCccEE
Q psy10538        148 LNRLRKLGLSD-NEIHRLPPE-IQNFEN------------------------LVELDVSRNGCN----------RQVEYV  191 (288)
Q Consensus       148 l~~L~~L~l~~-n~l~~l~~~-l~~~~~------------------------L~~L~l~~n~~~----------~~L~~L  191 (288)
                      +..+..|.+.+ |+|+.+|+. |..+..                        +..|.+..|.+.          ..++.+
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            66555544444 666665543 444444                        444444444333          256777


Q ss_pred             EccCCCCC--------------------------------------------------------------CCChHHHhcC
Q psy10538        192 DKRHCSLP--------------------------------------------------------------NVPEDVLRYF  209 (288)
Q Consensus       192 ~l~~n~l~--------------------------------------------------------------~~~~~~~~~~  209 (288)
                      ++..|.+-                                                              ..|...|..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            77666410                                                              0122336678


Q ss_pred             CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCc
Q psy10538        210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      ++|+.|++++|+++.+.+..  |.+...++.|.|..|+|..+.. .|.++..|+.|+|.+|+|+.+-+
T Consensus       274 ~~L~~lnlsnN~i~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGA--FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             ccceEeccCCCccchhhhhh--hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            99999999999999887763  8899999999999999986654 58889999999999999985544

>KOG0532|consensus

Probab=99.45  E-value=2.2e-15  Score=135.31  Aligned_cols=190  Identities=23%  Similarity=0.339  Sum_probs=131.0

Q ss_pred             EEecCCCCCCCCcccc--CCCCccEEEcCCCCccchhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCCC
Q psy10538         70 FHYYNSTKPRGPPEIN--EDAAYSERVLHESRLQQYEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANHI  138 (288)
Q Consensus        70 l~~~~~~~~~lp~~l~--~l~~l~~l~l~~n~l~~l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i  138 (288)
                      +.+.+..+..+|..-.  .++.-...|++.|++..+|+...         .+.+.+..++ ..++++..|+.++++.|.+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchh
Confidence            3444444455553222  23344677888888887765432         3344444443 3355666666666666666


Q ss_pred             cccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecc
Q psy10538        139 RDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD  218 (288)
Q Consensus       139 ~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  218 (288)
                      +.+|..++.++ |+.|-+++|+++.+|..++....|..++++.|              .+..+|+...+ +.+|+.+.+.
T Consensus       134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n--------------ei~slpsql~~-l~slr~l~vr  197 (722)
T KOG0532|consen  134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN--------------EIQSLPSQLGY-LTSLRDLNVR  197 (722)
T ss_pred             hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh--------------hhhhchHHhhh-HHHHHHHHHh
Confidence            66666555444 56666666666666666665555666666666              78888877554 7889999999


Q ss_pred             cCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccc
Q psy10538        219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY  280 (288)
Q Consensus       219 ~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~  280 (288)
                      +|++..+|..   +. .-.|..||++.|++..+|..|.++..|++|-|.+|.+..-|..++-
T Consensus       198 Rn~l~~lp~E---l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  198 RNHLEDLPEE---LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             hhhhhhCCHH---Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence            9999988887   55 4567889999999999999999999999999999999888887763

>PLN03210 Resistant to P

Probab=99.41  E-value=4e-12  Score=129.16  Aligned_cols=233  Identities=16%  Similarity=0.173  Sum_probs=125.7

Q ss_pred             hhhhhhhccccccccccCcc-----ccccccCC-CCcccccccccccCCccccEEeeCCC-ccccccCcc-----ceEEe
Q psy10538          5 SKFFNKELSSHLFRGKISED-----TINSLCDG-GDVTSHTSRSWSRNASSIREYLCHKT-YLAAEEAFN-----EWFHY   72 (288)
Q Consensus         5 ~~~~~~~ls~~~~~g~~p~~-----~~~~~~~~-~~~~~~~~~~~~~~l~~L~~l~~~~~-~l~~l~~~~-----~~l~~   72 (288)
                      +++-..+|+++...+.+|.-     +..+.+.. ..+...+  ..+.++++|+.++++.+ .+..++...     ..+.+
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L  711 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL  711 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence            44455667776666666641     11111111 1112222  34556777777777653 343332211     12333


Q ss_pred             cCC-CCCCCCccccCCCCccEEEcCCCCccchhhHHHhh--------c-------CCceecchHHhhcCcCCcEEEcccC
Q psy10538         73 YNS-TKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEW--------T-------SKLKLYSKDVLRYFRSLEELLLDAN  136 (288)
Q Consensus        73 ~~~-~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~--------~-------~~l~~~~~~~~~~l~~L~~L~l~~n  136 (288)
                      .++ .+..+|.   ...++++|++++|.+..+|......        .       ..+..+.+..+...++|+.|++++|
T Consensus       712 sgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        712 SGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             CCCCCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            332 2334443   2456788888888877766432100        0       0111222223344578888888887


Q ss_pred             C-CcccCcccccCCCccEEecCCCC-CcccCccccCCCCCcEEEccCCCC-------CCCccEEEccCCCCCCCChHHHh
Q psy10538        137 H-IRDLPKNFFRLNRLRKLGLSDNE-IHRLPPEIQNFENLVELDVSRNGC-------NRQVEYVDKRHCSLPNVPEDVLR  207 (288)
Q Consensus       137 ~-i~~lp~~~~~l~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~n~~-------~~~L~~L~l~~n~l~~~~~~~~~  207 (288)
                      . +..+|..++.+++|+.|++++|. ++.+|..+ .+++|+.|++++|..       ..++++|++++|.++.+|..+ .
T Consensus       789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si-~  866 (1153)
T PLN03210        789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWI-E  866 (1153)
T ss_pred             CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHH-h
Confidence            6 44788888888888888888874 66777655 567788888887631       134555555555555554432 3


Q ss_pred             cCCCcceeeccc-CcccccCCccccccCCCCccEEEccCCC
Q psy10538        208 YFRSLEELLLDA-NHIRDLPKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       208 ~~~~L~~L~l~~-n~l~~l~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                      .+++|+.|++++ +.++.+|..   ...+++|+.+++++|.
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCc
Confidence            355555555544 344455544   4455555555555553

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=1.2e-13  Score=121.27  Aligned_cols=178  Identities=28%  Similarity=0.339  Sum_probs=127.4

Q ss_pred             CccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC---cCCcEEEcccCCCcc-----cCcccccC-CCc
Q psy10538         81 PPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF---RSLEELLLDANHIRD-----LPKNFFRL-NRL  151 (288)
Q Consensus        81 p~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l---~~L~~L~l~~n~i~~-----lp~~~~~l-~~L  151 (288)
                      +..+..+++++.+++++|.+...              .+..+..+   ++|++|++++|+++.     +...+..+ ++|
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~--------------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L  139 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPD--------------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL  139 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChh--------------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence            34566677888999988877631              12222223   459999999999872     23345556 899


Q ss_pred             cEEecCCCCCc-----ccCccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCCh----HHHhc
Q psy10538        152 RKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVPE----DVLRY  208 (288)
Q Consensus       152 ~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~~----~~~~~  208 (288)
                      +.|++++|.++     .++..+..++.|++|++++|.+.              .+|++|++++|.++....    ..+..
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence            99999999987     33445666788999999999876              279999999999874432    23445


Q ss_pred             CCCcceeecccCccccc-----CCccccccCCCCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCCCc
Q psy10538        209 FRSLEELLLDANHIRDL-----PKNYLDFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       209 ~~~L~~L~l~~n~l~~l-----~~~~~~~~~l~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~~i  274 (288)
                      +++|+.|++++|.++..     ...+  ....+.|+.|++++|.++     .++..+..+++|+.+++++|++++-
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            68899999999988742     1110  112478999999999986     3444566678999999999999843

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.38  E-value=2.7e-13  Score=119.07  Aligned_cols=171  Identities=24%  Similarity=0.268  Sum_probs=124.4

Q ss_pred             CCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC-cCCcEEEcccCCCc-----ccCcccccCCCccEEecCCCCC
Q psy10538         88 AAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF-RSLEELLLDANHIR-----DLPKNFFRLNRLRKLGLSDNEI  161 (288)
Q Consensus        88 ~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~l  161 (288)
                      +.|+++++++|++..-...          .....+..+ ++|+.|++++|.++     .++..+..+.+|++|++++|.+
T Consensus       108 ~~L~~L~ls~~~~~~~~~~----------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLR----------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             CcccEEEeeCCccchHHHH----------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            3499999999987631111          112234555 89999999999988     3444566678899999999988


Q ss_pred             c-----ccCccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCCh-HHHh----cCCCcceeec
Q psy10538        162 H-----RLPPEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVPE-DVLR----YFRSLEELLL  217 (288)
Q Consensus       162 ~-----~l~~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~~-~~~~----~~~~L~~L~l  217 (288)
                      +     .++..+...++|++|++++|.+.              ++|++|++++|.++.... ....    ..+.|+.|++
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence            7     24445566679999999999875              369999999999885322 1122    2378999999


Q ss_pred             ccCccc-----ccCCccccccCCCCccEEEccCCCCcc-----CCccccCC-CCCcEEECcCCCC
Q psy10538        218 DANHIR-----DLPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNF-ENLVELDVSRNAP  271 (288)
Q Consensus       218 ~~n~l~-----~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~-~~L~~L~L~~N~l  271 (288)
                      ++|.++     .+...   +..+++|+.+++++|.++.     +...+... +.|+.+++.+|.+
T Consensus       258 ~~n~i~~~~~~~l~~~---~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         258 SCNDITDDGAKDLAEV---LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCCCcHHHHHHHHH---HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999986     23333   5566899999999999983     33345555 7899999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=99.38  E-value=1.8e-14  Score=129.55  Aligned_cols=188  Identities=22%  Similarity=0.299  Sum_probs=145.4

Q ss_pred             CccccEEeeCCCccccccCccc------eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchH
Q psy10538         47 ASSIREYLCHKTYLAAEEAFNE------WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKD  120 (288)
Q Consensus        47 l~~L~~l~~~~~~l~~l~~~~~------~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~  120 (288)
                      ++.-..++++.+.++.++....      .+.++.|.+..+|+.+..+..++.++++.|++..+|..+             
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-------------  140 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-------------  140 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-------------
Confidence            4444455556666555433222      144455556667777777777777777777777554433             


Q ss_pred             HhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538        121 VLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN  200 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~  200 (288)
                        +.+ -|+.|.+++|+++.+|+.++.+..|..||.+.|.+..+|+.+..+.+|+.+.+.+|              ++..
T Consensus       141 --C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn--------------~l~~  203 (722)
T KOG0532|consen  141 --CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN--------------HLED  203 (722)
T ss_pred             --hcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh--------------hhhh
Confidence              333 58999999999999999999899999999999999999999999999999999999              8888


Q ss_pred             CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcccc---CCCCCcEEECcCC
Q psy10538        201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQ---NFENLVELDVSRN  269 (288)
Q Consensus       201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~---~~~~L~~L~L~~N  269 (288)
                      +|++... + .|..||+++|++..+|.+   |.+++.|++|-|.+|.+.+-|..+.   ...=-++|+...+
T Consensus       204 lp~El~~-L-pLi~lDfScNkis~iPv~---fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  204 LPEELCS-L-PLIRLDFSCNKISYLPVD---FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CCHHHhC-C-ceeeeecccCceeecchh---hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            9988662 3 489999999999999999   9999999999999999998887653   2233566666666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.37  E-value=7.7e-13  Score=119.90  Aligned_cols=177  Identities=33%  Similarity=0.466  Sum_probs=120.1

Q ss_pred             EEecCCCCCCCCccccCCC-CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccC
Q psy10538         70 FHYYNSTKPRGPPEINEDA-AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRL  148 (288)
Q Consensus        70 l~~~~~~~~~lp~~l~~l~-~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l  148 (288)
                      +...++.+.++|+..+... +++.+++++|++..++               ..+..++.|+.|++++|+++++|.....+
T Consensus       121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~---------------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~  185 (394)
T COG4886         121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP---------------SPLRNLPNLKNLDLSFNDLSDLPKLLSNL  185 (394)
T ss_pred             EecCCcccccCccccccchhhcccccccccchhhhh---------------hhhhccccccccccCCchhhhhhhhhhhh
Confidence            5555555666666666563 6777777776666443               22455667777777777777666655456


Q ss_pred             CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538        149 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN  228 (288)
Q Consensus       149 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~  228 (288)
                      +.|+.|++++|.++.+|........|+++.+++|              .+...+.. ...+.++..+.+.+|++..++..
T Consensus       186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N--------------~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~  250 (394)
T COG4886         186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNN--------------SIIELLSS-LSNLKNLSGLELSNNKLEDLPES  250 (394)
T ss_pred             hhhhheeccCCccccCchhhhhhhhhhhhhhcCC--------------cceecchh-hhhcccccccccCCceeeeccch
Confidence            6777777777777766665444445666666666              44444433 34467788888888888876665


Q ss_pred             cccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccc
Q psy10538        229 YLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY  280 (288)
Q Consensus       229 ~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~  280 (288)
                         ++.+.+++.|++++|+++.++. ++...+++.+++++|.+..++.....
T Consensus       251 ---~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         251 ---IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ---hccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence               7788888999999999888876 77888899999998888766554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=1.3e-12  Score=104.07  Aligned_cols=128  Identities=30%  Similarity=0.406  Sum_probs=51.5

Q ss_pred             hhcCcCCcEEEcccCCCcccCcccc-cCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN  200 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~~~~-~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~  200 (288)
                      +.+..++++|++++|.|+.+. .++ .+.+|+.|++++|.++.++ .+..++.|++|++++|              +++.
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N--------------~I~~   78 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN--------------RISS   78 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----------------S
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC--------------CCCc
Confidence            344557788888888888764 344 4678888888888888775 3566777777777777              7787


Q ss_pred             CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEEC
Q psy10538        201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDV  266 (288)
Q Consensus       201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L  266 (288)
                      +.+.....+++|++|++++|+|.++.. +..+..+++|+.|++.+|+++.-+.    .+..+|+|+.||-
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            766544457889999999999886654 1227788999999999999886554    2567889999884

>KOG1259|consensus

Probab=99.34  E-value=2.2e-13  Score=114.22  Aligned_cols=131  Identities=28%  Similarity=0.328  Sum_probs=106.2

Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV  205 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~  205 (288)
                      ..|+++|+++|.|+.+.++..-.|.++.|++++|++..+.. ++.+.+|+.|++++|              .++++.. +
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N--------------~Ls~~~G-w  347 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN--------------LLAECVG-W  347 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc--------------hhHhhhh-h
Confidence            35778899999999888888888999999999999887754 777788888888888              6665533 3


Q ss_pred             HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCC--ccccCCCCCcEEECcCCCCCCcCc
Q psy10538        206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      -..+.+.+.|.++.|.+.++..    ++.+.+|..|++++|+|.++.  ..++++|-|+++.|.+|++..+|+
T Consensus       348 h~KLGNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             HhhhcCEeeeehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            3346788899999999988876    788889999999999988443  468889999999999999887664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=4.1e-12  Score=115.11  Aligned_cols=157  Identities=35%  Similarity=0.501  Sum_probs=117.0

Q ss_pred             CcCCcEEEcccCCCcccCcccccCC-CccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---------CCccEEEcc
Q psy10538        125 FRSLEELLLDANHIRDLPKNFFRLN-RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKR  194 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~lp~~~~~l~-~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~  194 (288)
                      ++.++.|++.+|.++++|.....+. +|+.|++++|.+..+|..+..+++|+.|+++.|++.         ..++.|+++
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            3556666666666666666555553 666666666666666655666666666666666554         256667777


Q ss_pred             CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCc
Q psy10538        195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~i  274 (288)
                      +|+++.+|... +....|.++.+++|.+...+..   +..+.++..+.+.+|++..++..++.+++++.|++++|.++++
T Consensus       195 ~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~---~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         195 GNKISDLPPEI-ELLSALEELDLSNNSIIELLSS---LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             CCccccCchhh-hhhhhhhhhhhcCCcceecchh---hhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            77999998864 2256699999999976666665   7889999999999999998888899999999999999999999


Q ss_pred             CccccccccccC
Q psy10538        275 DSSMVYLKLGRK  286 (288)
Q Consensus       275 p~~~~~l~~~~~  286 (288)
                      +. ++.+..++.
T Consensus       271 ~~-~~~~~~l~~  281 (394)
T COG4886         271 SS-LGSLTNLRE  281 (394)
T ss_pred             cc-ccccCccCE
Confidence            88 666665554

>KOG3207|consensus

Probab=99.18  E-value=1.2e-11  Score=108.48  Aligned_cols=178  Identities=19%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc--ccccCCCccEEecCCCC
Q psy10538         83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDNE  160 (288)
Q Consensus        83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~  160 (288)
                      ....|++++.|+|+.|-+..|....            .....+|+|+.|.++.|++.....  .-..+++++.|.++.|.
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~------------~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG  208 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVL------------KIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG  208 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHH------------HHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC
Confidence            3556888888888888777665443            335678888888888888763221  11246788888888888


Q ss_pred             Cc--ccCccccCCCCCcEEEccCCC-C---------CCCccEEEccCCCCCCCCh-HHHhcCCCcceeecccCccccc--
Q psy10538        161 IH--RLPPEIQNFENLVELDVSRNG-C---------NRQVEYVDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDL--  225 (288)
Q Consensus       161 l~--~l~~~l~~~~~L~~L~l~~n~-~---------~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l--  225 (288)
                      ++  .+-.....+++++.|++.+|. +         ...|+.|||++|.+-.++. .....++.|..|+++.++++++  
T Consensus       209 ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~  288 (505)
T KOG3207|consen  209 LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE  288 (505)
T ss_pred             CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcC
Confidence            87  344445667888888888882 2         1466777777776665442 1223466666677776666643  


Q ss_pred             CCc-cc-cccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCC
Q psy10538        226 PKN-YL-DFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       226 ~~~-~~-~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~  272 (288)
                      |+. .. .....++|++|++..|+|++++.  .+..+++|+.|....|.+.
T Consensus       289 ~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  289 PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            221 00 01234566777777777665543  3445566666666666664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=1.7e-11  Score=97.57  Aligned_cols=135  Identities=24%  Similarity=0.323  Sum_probs=48.0

Q ss_pred             cccCCCcccCcccccCCCccEEecCCCCCcccCcccc-CCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCC
Q psy10538        133 LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ-NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS  211 (288)
Q Consensus       133 l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~-~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  211 (288)
                      ++.+.|..+|. +.....++.|++.+|.++.+. .++ .+.+|+.|++++|              .++.+..  +..+++
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N--------------~I~~l~~--l~~L~~   65 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN--------------QITKLEG--LPGLPR   65 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS----------------S--TT------TT
T ss_pred             ccccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCC--------------CCccccC--ccChhh
Confidence            34445555543 344567888999999888774 343 4567777777777              7776653  455899


Q ss_pred             cceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCcCc----ccccccccc
Q psy10538        212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNVDS----SMVYLKLGR  285 (288)
Q Consensus       212 L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~ip~----~~~~l~~~~  285 (288)
                      |+.|++++|.|+++++.+  ...+++|+.|++++|+|.++..  .++.+++|+.|++.+|++.+-+.    .+..++.++
T Consensus        66 L~~L~L~~N~I~~i~~~l--~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk  143 (175)
T PF14580_consen   66 LKTLDLSNNRISSISEGL--DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK  143 (175)
T ss_dssp             --EEE--SS---S-CHHH--HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred             hhhcccCCCCCCccccch--HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence            999999999999997641  2468999999999999985543  57889999999999999985443    444555555


Q ss_pred             CC
Q psy10538        286 KD  287 (288)
Q Consensus       286 ~~  287 (288)
                      .+
T Consensus       144 ~L  145 (175)
T PF14580_consen  144 VL  145 (175)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>KOG1909|consensus

Probab=99.08  E-value=1.9e-11  Score=104.38  Aligned_cols=179  Identities=20%  Similarity=0.213  Sum_probs=132.1

Q ss_pred             ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc--------------cccc
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--------------NFFR  147 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~--------------~~~~  147 (288)
                      +.+-.++.|+.++||+|.+..         ..+.. -.+.+.....|++|++.+|.+.....              ....
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~---------~g~~~-l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~  155 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGP---------KGIRG-LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS  155 (382)
T ss_pred             HHHhcCCceeEeeccccccCc---------cchHH-HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC
Confidence            345567799999999999873         11111 12346678899999999999873211              2234


Q ss_pred             CCCccEEecCCCCCcc-----cCccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCC----hH
Q psy10538        148 LNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVP----ED  204 (288)
Q Consensus       148 l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~----~~  204 (288)
                      .+.|+++..+.|++..     +...+...+.|+.+.+++|.|.              +.|++|||.+|.++.--    ..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            6789999999999873     3334677789999999999887              48999999999998432    23


Q ss_pred             HHhcCCCcceeecccCcccc-----cCCccccccCCCCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCC
Q psy10538        205 VLRYFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      .+..+++|+++++++|.++.     +-..+  -...++|+++.+.+|.|+     .+.......+.|+.|+|++|++.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al--~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDAL--KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHH--hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            45567889999999999872     22221  334789999999999998     23334566789999999999994

>KOG1259|consensus

Probab=98.99  E-value=6.8e-11  Score=99.46  Aligned_cols=138  Identities=25%  Similarity=0.281  Sum_probs=102.0

Q ss_pred             cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCc
Q psy10538         83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus        83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~  162 (288)
                      .+.+...|+++||++|.++.+++..               .-.|+++.|++++|+|..+.. +..+++|+.||+++|.++
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESv---------------KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESV---------------KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhh---------------hhccceeEEeccccceeeehh-hhhcccceEeecccchhH
Confidence            3456677899999999988765553               446899999999999998855 788999999999999998


Q ss_pred             ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538        163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG  242 (288)
Q Consensus       163 ~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~  242 (288)
                      .+-..-..+.++++|.+++|              .+..+..  +..+-+|..||+.+|+|+.+..-. .++.++-|+++.
T Consensus       343 ~~~Gwh~KLGNIKtL~La~N--------------~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~  405 (490)
T KOG1259|consen  343 ECVGWHLKLGNIKTLKLAQN--------------KIETLSG--LRKLYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLR  405 (490)
T ss_pred             hhhhhHhhhcCEeeeehhhh--------------hHhhhhh--hHhhhhheeccccccchhhHHHhc-ccccccHHHHHh
Confidence            77554445667888888888              5544432  233566778888888887543210 177788888888


Q ss_pred             ccCCCCccCCc
Q psy10538        243 LSDNEIHRLPP  253 (288)
Q Consensus       243 l~~n~l~~~p~  253 (288)
                      +.+|.+..+|+
T Consensus       406 L~~NPl~~~vd  416 (490)
T KOG1259|consen  406 LTGNPLAGSVD  416 (490)
T ss_pred             hcCCCccccch
Confidence            88888876665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1e-09  Score=72.07  Aligned_cols=58  Identities=33%  Similarity=0.517  Sum_probs=27.1

Q ss_pred             ccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCC
Q psy10538        188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       188 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                      |++|++++|+++.++++.+..+++|++|++++|.++.+++..  +.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCc
Confidence            334444444455554444444455555555555555444331  4444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.3e-09  Score=70.40  Aligned_cols=60  Identities=37%  Similarity=0.587  Sum_probs=54.5

Q ss_pred             CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCC
Q psy10538        210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAP  271 (288)
Q Consensus       210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l  271 (288)
                      ++|+.|++++|+++.+|...  +.++++|++|++++|.++.+++ .|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~--f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDS--FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTT--TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHH--HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999999999763  7899999999999999997765 689999999999999975

...

>KOG0531|consensus

Probab=98.79  E-value=1.3e-09  Score=99.44  Aligned_cols=158  Identities=23%  Similarity=0.290  Sum_probs=83.5

Q ss_pred             EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCC
Q psy10538         70 FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLN  149 (288)
Q Consensus        70 l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~  149 (288)
                      +.+.++.+..+...+..+.+|+++++++|.|.++..                +..++.|+.|++++|.|+.+.. +..++
T Consensus       100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----------------l~~l~~L~~L~l~~N~i~~~~~-~~~l~  162 (414)
T KOG0531|consen  100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----------------LSTLTLLKELNLSGNLISDISG-LESLK  162 (414)
T ss_pred             eeccccchhhcccchhhhhcchheeccccccccccc----------------hhhccchhhheeccCcchhccC-Cccch
Confidence            444444444444435566666777777766664311                2334456777777777776543 34466


Q ss_pred             CccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCC--Ccceeecc
Q psy10538        150 RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFR--SLEELLLD  218 (288)
Q Consensus       150 ~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~  218 (288)
                      .|+.+++++|++..+... ...+..++.+++.+|.+.        ..+..+++..|.++.+.+..  ...  +|+.+++.
T Consensus       163 ~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~--~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLN--ELVMLHLRELYLS  240 (414)
T ss_pred             hhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcc--cchhHHHHHHhcc
Confidence            777777777777665443 345566666666666544        13333344455544332211  011  25555555


Q ss_pred             cCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       219 ~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      +|.+..++..   +..+..+..+++..|++.
T Consensus       241 ~n~i~~~~~~---~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  241 GNRISRSPEG---LENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cCcccccccc---ccccccccccchhhcccc
Confidence            5555554322   444555555555555544

>KOG1909|consensus

Probab=98.76  E-value=2.4e-09  Score=91.69  Aligned_cols=149  Identities=19%  Similarity=0.156  Sum_probs=110.3

Q ss_pred             HhhcCcCCcEEEcccCCCc-ccCc----ccccCCCccEEecCCCCCccc-----Cc---------cccCCCCCcEEEccC
Q psy10538        121 VLRYFRSLEELLLDANHIR-DLPK----NFFRLNRLRKLGLSDNEIHRL-----PP---------EIQNFENLVELDVSR  181 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~-~lp~----~~~~l~~L~~L~l~~n~l~~l-----~~---------~l~~~~~L~~L~l~~  181 (288)
                      ++...++|++++||.|-+. .-++    .+.+...|++|.+.+|.+...     ..         -....+.|+++...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3556779999999999887 3333    345678999999999987622     11         134567899999999


Q ss_pred             CCCC--------------CCccEEEccCCCCCC----CChHHHhcCCCcceeecccCccc-----ccCCccccccCCCCc
Q psy10538        182 NGCN--------------RQVEYVDKRHCSLPN----VPEDVLRYFRSLEELLLDANHIR-----DLPKNYLDFFRLNRL  238 (288)
Q Consensus       182 n~~~--------------~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~-----~l~~~~~~~~~l~~L  238 (288)
                      |.+.              +.|+.+.+..|.+..    .-...+..+++|+.||+..|-++     .+...   +..+++|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka---L~s~~~L  243 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA---LSSWPHL  243 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH---hcccchh
Confidence            9765              489999999998872    22234567899999999999987     23333   5667899


Q ss_pred             cEEEccCCCCc-----cCCccc-cCCCCCcEEECcCCCCC
Q psy10538        239 RKLGLSDNEIH-----RLPPEI-QNFENLVELDVSRNAPS  272 (288)
Q Consensus       239 ~~L~l~~n~l~-----~~p~~l-~~~~~L~~L~L~~N~l~  272 (288)
                      +.+++++|.+.     .+...+ ...|.|+.+.+.+|.|+
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            99999999987     222233 34789999999999886

>KOG0531|consensus

Probab=98.75  E-value=1.5e-09  Score=99.07  Aligned_cols=168  Identities=30%  Similarity=0.361  Sum_probs=105.5

Q ss_pred             cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCc
Q psy10538         83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus        83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~  162 (288)
                      .+..+..++.+++.+|++..+...               +..+++|++|++++|.|+.+. .+..++.|+.|++++|.++
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~---------------l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENL---------------LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             ccccccceeeeeccccchhhcccc---------------hhhhhcchheecccccccccc-chhhccchhhheeccCcch
Confidence            366677788888888777754221               455778888888888888663 3445666888888888877


Q ss_pred             ccCccccCCCCCcEEEccCCCCC---C-------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccc
Q psy10538        163 RLPPEIQNFENLVELDVSRNGCN---R-------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF  232 (288)
Q Consensus       163 ~l~~~l~~~~~L~~L~l~~n~~~---~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~  232 (288)
                      .+.. +..+..|+.+++++|.+.   .       .++.+++++|.+..+..  +..+..+..+++..|.++.+.+    +
T Consensus       154 ~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~----l  226 (414)
T KOG0531|consen  154 DISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG----L  226 (414)
T ss_pred             hccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC----c
Confidence            6643 334667777777777433   1       34445555555554332  1112333444555565554443    2


Q ss_pred             cCCCC--ccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538        233 FRLNR--LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       233 ~~l~~--L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                      .....  |+.+++.+|++..++..+..+..+..+++..|++..
T Consensus       227 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  227 NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             ccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence            33333  778888888888776667777788888888887763

>KOG3207|consensus

Probab=98.71  E-value=3e-09  Score=93.55  Aligned_cols=152  Identities=22%  Similarity=0.254  Sum_probs=118.2

Q ss_pred             HhhcCcCCcEEEcccCCCccc---CcccccCCCccEEecCCCCCcccCcc--ccCCCCCcEEEccCCCCC----------
Q psy10538        121 VLRYFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNGCN----------  185 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~~l---p~~~~~l~~L~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n~~~----------  185 (288)
                      ....+++++.||+++|-++.+   ..-...+++|+.|+++.|++...-++  -..+++++.|.++.|+++          
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            467789999999999988843   33456799999999999998743222  235678999999999988          


Q ss_pred             -CCccEEEccCCCCC---CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc--cCCcc-----
Q psy10538        186 -RQVEYVDKRHCSLP---NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPE-----  254 (288)
Q Consensus       186 -~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~-----  254 (288)
                       ++++.|.|.+|...   ..+..   .+..|++||+++|.+-+++.. ...+.++.|+.|.++.+.+.  ..|+.     
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k  296 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDK  296 (505)
T ss_pred             CCcHHHhhhhcccccceecchhh---hhhHHhhccccCCcccccccc-cccccccchhhhhccccCcchhcCCCccchhh
Confidence             58999999999522   33333   356799999999999877732 12789999999999999998  44543     


Q ss_pred             ccCCCCCcEEECcCCCCCCcCc
Q psy10538        255 IQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       255 l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      ...++.|++|++..|++.++++
T Consensus       297 t~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  297 THTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             hcccccceeeecccCccccccc
Confidence            3467899999999999987753

>KOG2982|consensus

Probab=98.71  E-value=1.8e-08  Score=84.90  Aligned_cols=170  Identities=20%  Similarity=0.298  Sum_probs=124.2

Q ss_pred             CCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCccc-ccCCCccEEecCCCCCc--
Q psy10538         86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNF-FRLNRLRKLGLSDNEIH--  162 (288)
Q Consensus        86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~l~~n~l~--  162 (288)
                      .++.++++||.+|.+..|.++.+            .+.++|.++.|+++.|.+...-... ....+|+++-+.+..+.  
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~------------ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~  136 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGA------------ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT  136 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHH------------HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh
Confidence            36678999999999999987753            3678999999999999987322222 45678999999998876  


Q ss_pred             ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH-------------------HHhcCCCcceeecccCccc
Q psy10538        163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED-------------------VLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       163 ~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~-------------------~~~~~~~L~~L~l~~n~l~  223 (288)
                      .....+..++.++++.++.|    +++.+.++++....+.+.                   ....++++..+.+..|.+.
T Consensus       137 ~~~s~l~~lP~vtelHmS~N----~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  137 QSTSSLDDLPKVTELHMSDN----SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             hhhhhhhcchhhhhhhhccc----hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence            34445677788889988888    444455554444333211                   2234578888888888887


Q ss_pred             ccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCC
Q psy10538        224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       224 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~  272 (288)
                      +...+- .....+.+..|.|+.++|.++..  .+.+++.|+.|.++++++.
T Consensus       213 ~~s~ek-~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  213 TESSEK-GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             chhhcc-cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            543210 16677888899999999996654  5889999999999999886

>KOG1859|consensus

Probab=98.68  E-value=2.2e-10  Score=106.28  Aligned_cols=164  Identities=19%  Similarity=0.221  Sum_probs=84.0

Q ss_pred             CccccCCCCccEEEcCCCCccchhhHHHhh-------c-CCceecchHHhh-------c---CcCCcEEEcccCCCcccC
Q psy10538         81 PPEINEDAAYSERVLHESRLQQYEEVVAEW-------T-SKLKLYSKDVLR-------Y---FRSLEELLLDANHIRDLP  142 (288)
Q Consensus        81 p~~l~~l~~l~~l~l~~n~l~~l~~~~~~~-------~-~~l~~~~~~~~~-------~---l~~L~~L~l~~n~i~~lp  142 (288)
                      |-.|+....|++|.+.++.+.....+....       | +.+.. ..+.|.       +   --.|...+.++|++..+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~A-l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDA-LRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHH-HHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence            566888889999999998877533221111       0 00000 000000       0   013445566666666665


Q ss_pred             cccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcc
Q psy10538        143 KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLE  213 (288)
Q Consensus       143 ~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~  213 (288)
                      .++.-++.++.|++++|+++.+. .+-.++.|++||+++|.+.         ..|..|.+++|.++.+..  .+++.+|+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~  257 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLY  257 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhh
Confidence            55555666666666666666554 4555666666666666332         123334444445554432  23355555


Q ss_pred             eeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        214 ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       214 ~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      .||+++|-+.....- .+++.+.+|+.|+|.+|.+.
T Consensus       258 ~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccc
Confidence            556665555533221 01444555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=98.65  E-value=5.8e-08  Score=92.89  Aligned_cols=90  Identities=21%  Similarity=0.324  Sum_probs=65.5

Q ss_pred             ccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEE
Q psy10538        188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELD  265 (288)
Q Consensus       188 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~  265 (288)
                      ++.|+|++|.++...+..+..+++|+.|++++|.++ .+|..   ++.+++|+.|++++|+++ .+|..++.+++|+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~---~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS---LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH---HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            667777777777444444555777888888888776 66665   777778888888888777 6777777777888888


Q ss_pred             CcCCCCC-CcCccccc
Q psy10538        266 VSRNAPS-NVDSSMVY  280 (288)
Q Consensus       266 L~~N~l~-~ip~~~~~  280 (288)
                      +++|+++ .+|..+..
T Consensus       497 Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        497 LNGNSLSGRVPAALGG  512 (623)
T ss_pred             CcCCcccccCChHHhh
Confidence            8888777 67776654

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=1.2e-07  Score=90.86  Aligned_cols=104  Identities=26%  Similarity=0.408  Sum_probs=75.5

Q ss_pred             ccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCc
Q psy10538        151 LRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKN  228 (288)
Q Consensus       151 L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~  228 (288)
                      ++.|++++|.+. .+|..+..+++|+.|++++|              .++...+..+..+++|+.|++++|.++ .+|..
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N--------------~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN--------------SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCC--------------cccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence            566777777766 56666767777777777666              666333333566888888888888887 67776


Q ss_pred             cccccCCCCccEEEccCCCCc-cCCccccCC-CCCcEEECcCCCC
Q psy10538        229 YLDFFRLNRLRKLGLSDNEIH-RLPPEIQNF-ENLVELDVSRNAP  271 (288)
Q Consensus       229 ~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~-~~L~~L~L~~N~l  271 (288)
                         ++.+++|+.|++++|+++ .+|..+... .++..+++.+|..
T Consensus       486 ---l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        486 ---LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             ---HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence               788888888888888888 788777653 4667888888864

>KOG4579|consensus

Probab=98.56  E-value=6.1e-09  Score=78.11  Aligned_cols=78  Identities=27%  Similarity=0.377  Sum_probs=42.8

Q ss_pred             CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538        197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      .+..+|+.....++..+.+++++|.++++|..   +..++.|+.++++.|.+...|..+..+.++..||..+|.+..||-
T Consensus        64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE---~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen   64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEE---LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             hhhhCCHHHhhccchhhhhhcchhhhhhchHH---HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            55555555444444555555555555555555   555555555555555555555555445555555555555555544


Q ss_pred             c
Q psy10538        277 S  277 (288)
Q Consensus       277 ~  277 (288)
                      .
T Consensus       141 d  141 (177)
T KOG4579|consen  141 D  141 (177)
T ss_pred             H
Confidence            3

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.52  E-value=9.5e-08  Score=58.00  Aligned_cols=41  Identities=41%  Similarity=0.694  Sum_probs=29.5

Q ss_pred             CCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538        236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       236 ~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      ++|++|++++|+|+++|+.++++++|+.|++++|+|+++|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            36777788888888777777778888888888888776653

...

>KOG4658|consensus

Probab=98.38  E-value=2.1e-07  Score=91.50  Aligned_cols=157  Identities=25%  Similarity=0.352  Sum_probs=102.0

Q ss_pred             ceecchHHhhcCcCCcEEEcccCC-CcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538        114 LKLYSKDVLRYFRSLEELLLDANH-IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------  185 (288)
Q Consensus       114 l~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------  185 (288)
                      +..++.+.|..++.|++||+++|. +.++|..++.+-+|++|+++++.+.++|..+..++.|.+|++..+...       
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchh
Confidence            456677889999999999999876 679999999999999999999999999999999999999999877521       


Q ss_pred             ---CCccEEEccCCCCC--CCChHHHhcCCCcceeecccCcccccCCccccccCCCCcc----EEEccCCCCccCCcccc
Q psy10538        186 ---RQVEYVDKRHCSLP--NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR----KLGLSDNEIHRLPPEIQ  256 (288)
Q Consensus       186 ---~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~----~L~l~~n~l~~~p~~l~  256 (288)
                         .+|++|.+......  ...-.-...+.+|+.+........ +-..   +..+..|+    .+.+.++.....+..+.
T Consensus       639 ~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e~---l~~~~~L~~~~~~l~~~~~~~~~~~~~~~  714 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLED---LLGMTRLRSLLQSLSIEGCSKRTLISSLG  714 (889)
T ss_pred             hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHhh---hhhhHHHHHHhHhhhhcccccceeecccc
Confidence               35666666544421  111111122333333333222220 0000   11222222    33333344445566677


Q ss_pred             CCCCCcEEECcCCCCCCc
Q psy10538        257 NFENLVELDVSRNAPSNV  274 (288)
Q Consensus       257 ~~~~L~~L~L~~N~l~~i  274 (288)
                      .+.+|+.|.+.++.+.++
T Consensus       715 ~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  715 SLGNLEELSILDCGISEI  732 (889)
T ss_pred             cccCcceEEEEcCCCchh
Confidence            888899999988887643

>KOG1859|consensus

Probab=98.37  E-value=8e-09  Score=96.20  Aligned_cols=106  Identities=25%  Similarity=0.268  Sum_probs=80.9

Q ss_pred             hHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccE
Q psy10538        119 KDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEY  190 (288)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~  190 (288)
                      +..+.-++.++.|++++|+++++. .+..+++|++||+++|.+..+|.--..-..|+.|.+++|.++        .+|+.
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~  258 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYG  258 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhc
Confidence            344666788999999999998775 677899999999999999988753222234899999999776        37889


Q ss_pred             EEccCCCCCCCCh-HHHhcCCCcceeecccCccccc
Q psy10538        191 VDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDL  225 (288)
Q Consensus       191 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l  225 (288)
                      ||+++|-+..... .-+..+..|+.|++.+|.+---
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            9999998875433 2233467899999999987533

>KOG1644|consensus

Probab=98.30  E-value=1.8e-06  Score=69.14  Aligned_cols=125  Identities=21%  Similarity=0.301  Sum_probs=73.6

Q ss_pred             CcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHh
Q psy10538        128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLR  207 (288)
Q Consensus       128 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~  207 (288)
                      -+.+++++.++..+-.-=........+|+++|.+..++ .|..++.|.+|.+.+|              +|+.+.+....
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN--------------rIt~I~p~L~~   85 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN--------------RITRIDPDLDT   85 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCC--------------cceeeccchhh
Confidence            44556666655533220011345566677777665443 2444556666666666              66666666666


Q ss_pred             cCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEECcC
Q psy10538        208 YFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDVSR  268 (288)
Q Consensus       208 ~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L~~  268 (288)
                      .+++|+.|.+.+|.|..+.+- -++..++.|++|.+=+|.++.-+.    .+..+|+|+.||+..
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            566777777777777644331 126667777777777777764433    256677777777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=2.8e-07  Score=76.91  Aligned_cols=185  Identities=18%  Similarity=0.173  Sum_probs=126.0

Q ss_pred             ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-----ccc---------c
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-----NFF---------R  147 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-----~~~---------~  147 (288)
                      +.+-.|+.++..+|++|.+..          .......+.++.-+.+.+|.+++|.+..+..     ++.         .
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~----------~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~  155 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGS----------EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD  155 (388)
T ss_pred             HHHhcCCcceeeeccccccCc----------ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc
Confidence            456689999999999998873          1111123457777899999999999874422     222         2


Q ss_pred             CCCccEEecCCCCCcccCcc-----ccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCCh----
Q psy10538        148 LNRLRKLGLSDNEIHRLPPE-----IQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVPE----  203 (288)
Q Consensus       148 l~~L~~L~l~~n~l~~l~~~-----l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~~----  203 (288)
                      -|.|+++....|++..-|..     +.+...|+++.+.+|.|.               .+|+.||+++|.++....    
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            47899999999998855432     445578999999999887               389999999999884332    


Q ss_pred             HHHhcCCCcceeecccCcccccCC-cc---ccccCCCCccEEEccCCCCc--c-----CCccc-cCCCCCcEEECcCCCC
Q psy10538        204 DVLRYFRSLEELLLDANHIRDLPK-NY---LDFFRLNRLRKLGLSDNEIH--R-----LPPEI-QNFENLVELDVSRNAP  271 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~~l~~-~~---~~~~~l~~L~~L~l~~n~l~--~-----~p~~l-~~~~~L~~L~L~~N~l  271 (288)
                      ..+..++.|++|.+..|-++.-.. .+   +.-...++|..|...+|.+.  .     +|... .++|-|..|.+.+|++
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            334445678999998887762111 00   01123567888888888765  1     22211 3577788888888888


Q ss_pred             CCcCc
Q psy10538        272 SNVDS  276 (288)
Q Consensus       272 ~~ip~  276 (288)
                      +....
T Consensus       316 ~E~~d  320 (388)
T COG5238         316 KELAD  320 (388)
T ss_pred             hhHHH
Confidence            75433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1.1e-06  Score=53.34  Aligned_cols=40  Identities=43%  Similarity=0.622  Sum_probs=25.4

Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP  165 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~  165 (288)
                      ++|++|++++|+|+.+|+.+..+++|+.|++++|.++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3566777777777777666666777777777777666543

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.23  E-value=8.9e-06  Score=72.87  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=14.4

Q ss_pred             CCccEEEccCCCCccCCccccCCCCCcEEECcCC
Q psy10538        236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN  269 (288)
Q Consensus       236 ~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N  269 (288)
                      .+|++|++++|....+|..+-  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            345555555555443333221  34555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.22  E-value=4.3e-07  Score=75.84  Aligned_cols=151  Identities=21%  Similarity=0.224  Sum_probs=96.8

Q ss_pred             HhhcCcCCcEEEcccCCCc-ccCc----ccccCCCccEEecCCCCCcccCc-----c---------ccCCCCCcEEEccC
Q psy10538        121 VLRYFRSLEELLLDANHIR-DLPK----NFFRLNRLRKLGLSDNEIHRLPP-----E---------IQNFENLVELDVSR  181 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~-~lp~----~~~~l~~L~~L~l~~n~l~~l~~-----~---------l~~~~~L~~L~l~~  181 (288)
                      ++.++|+|+..+++.|-+. +.|+    .+.+.+.|.+|.+++|.+..+..     +         ....+.|+++...+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4667788999999998887 4443    34556788888888887763321     1         23456788888888


Q ss_pred             CCCC--------------CCccEEEccCCCCCCC--Ch----HHHhcCCCcceeecccCcccccCCccc--cccCCCCcc
Q psy10538        182 NGCN--------------RQVEYVDKRHCSLPNV--PE----DVLRYFRSLEELLLDANHIRDLPKNYL--DFFRLNRLR  239 (288)
Q Consensus       182 n~~~--------------~~L~~L~l~~n~l~~~--~~----~~~~~~~~L~~L~l~~n~l~~l~~~~~--~~~~l~~L~  239 (288)
                      |.+.              ..|+.+.+..|.|..-  ..    ..+ .+.+|+.||++.|-++-.....+  .+..++.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            8665              2778888888877621  11    222 35778888888887772221111  144556678


Q ss_pred             EEEccCCCCcc-----CCccc--cCCCCCcEEECcCCCCC
Q psy10538        240 KLGLSDNEIHR-----LPPEI--QNFENLVELDVSRNAPS  272 (288)
Q Consensus       240 ~L~l~~n~l~~-----~p~~l--~~~~~L~~L~L~~N~l~  272 (288)
                      .|.+..|.++.     +-..+  ...|+|..|-..+|.+.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            88888887762     11122  24567788888887654

>KOG4579|consensus

Probab=98.18  E-value=1.1e-07  Score=71.43  Aligned_cols=86  Identities=24%  Similarity=0.363  Sum_probs=41.9

Q ss_pred             cCCcEEEcccCCCcccCccccc-CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538        126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED  204 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~  204 (288)
                      ..|...++++|.+.++|+.|.. .+..+++++++|.+..+|..+..|+.|+.++++.|              .+...|.-
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N--------------~l~~~p~v  118 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN--------------PLNAEPRV  118 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC--------------ccccchHH
Confidence            3444455555555555554432 23455555555555555555555555555555554              44444333


Q ss_pred             HHhcCCCcceeecccCcccccC
Q psy10538        205 VLRYFRSLEELLLDANHIRDLP  226 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l~~l~  226 (288)
                      ++. +.++..|+..+|.+..+|
T Consensus       119 i~~-L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  119 IAP-LIKLDMLDSPENARAEID  139 (177)
T ss_pred             HHH-HHhHHHhcCCCCccccCc
Confidence            333 444555555555544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.09  E-value=8.4e-06  Score=73.04  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=16.9

Q ss_pred             CCcceeecccCcccccCCccccccCCCCccEEEccCC
Q psy10538        210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN  246 (288)
Q Consensus       210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n  246 (288)
                      ++|+.|++++|....+|..+     ..+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~L-----P~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKL-----PESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCcccc-----cccCcEEEeccc
Confidence            45666666665554444331     145666665554

>KOG4658|consensus

Probab=97.96  E-value=9.4e-06  Score=80.15  Aligned_cols=13  Identities=38%  Similarity=0.386  Sum_probs=5.7

Q ss_pred             CCCCCcEEEccCC
Q psy10538        170 NFENLVELDVSRN  182 (288)
Q Consensus       170 ~~~~L~~L~l~~n  182 (288)
                      .++.|++||+++|
T Consensus       569 ~m~~LrVLDLs~~  581 (889)
T KOG4658|consen  569 SLPLLRVLDLSGN  581 (889)
T ss_pred             hCcceEEEECCCC
Confidence            3444444444443

>KOG2120|consensus

Probab=97.92  E-value=5.9e-07  Score=75.95  Aligned_cols=147  Identities=20%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             HhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEecCCCC-CcccCc--cccCCCCCcEEEccCCCCC-----------
Q psy10538        121 VLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNE-IHRLPP--EIQNFENLVELDVSRNGCN-----------  185 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~-l~~l~~--~l~~~~~L~~L~l~~n~~~-----------  185 (288)
                      .+..+.+|+.|.+.|+++. .+...+..-.+|+.|+++.+. +++-..  -+.+++.|..|+++++..+           
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence            3566778888888888877 555556666778888888775 443322  2566778888888888543           


Q ss_pred             -CCccEEEccCCCCC---CCChHHHhcCCCcceeecccCc-ccccCCccccccCCCCccEEEccCCCCc--cCCccccCC
Q psy10538        186 -RQVEYVDKRHCSLP---NVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNF  258 (288)
Q Consensus       186 -~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~  258 (288)
                       .+|+.|+++++.-.   .--......+++|..||+++|. ++.  ..+-.+..++.|++|+++.|..-  +---.+...
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~  362 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK  362 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeeeeccC
Confidence             57888888877522   1112234457888888888764 332  11112667788888888877622  111245677


Q ss_pred             CCCcEEECcCC
Q psy10538        259 ENLVELDVSRN  269 (288)
Q Consensus       259 ~~L~~L~L~~N  269 (288)
                      |.|.+||+-++
T Consensus       363 psl~yLdv~g~  373 (419)
T KOG2120|consen  363 PSLVYLDVFGC  373 (419)
T ss_pred             cceEEEEeccc
Confidence            88888887654

>KOG1644|consensus

Probab=97.77  E-value=3.9e-05  Score=61.57  Aligned_cols=81  Identities=25%  Similarity=0.338  Sum_probs=58.6

Q ss_pred             CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCccccc-CCCccEEecCCCCCcccCc-
Q psy10538         89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP-  166 (288)
Q Consensus        89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~l~~l~~-  166 (288)
                      ....+||++|.+..+                +.|..++.|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+|+++++.+ 
T Consensus        43 ~~d~iDLtdNdl~~l----------------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl  106 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL----------------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL  106 (233)
T ss_pred             ccceecccccchhhc----------------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc
Confidence            456778888776642                3366778888888888888888665554 5678888888888886643 


Q ss_pred             -cccCCCCCcEEEccCCCCC
Q psy10538        167 -EIQNFENLVELDVSRNGCN  185 (288)
Q Consensus       167 -~l~~~~~L~~L~l~~n~~~  185 (288)
                       -+..++.|+.|.+-+|.++
T Consensus       107 ~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  107 DPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             chhccCCccceeeecCCchh
Confidence             2567778888888888443

>KOG2120|consensus

Probab=97.69  E-value=1.2e-06  Score=74.19  Aligned_cols=142  Identities=24%  Similarity=0.267  Sum_probs=96.5

Q ss_pred             cCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCC-CC-----------CCccE
Q psy10538        126 RSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNG-CN-----------RQVEY  190 (288)
Q Consensus       126 ~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~-~~-----------~~L~~  190 (288)
                      ..+|++|++...|+  .+..-+.++.+|+.+.+.++++. .+-..++...+|+.++++++. ++           ..|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            45889999999888  45555667788999999999888 566667788889999998763 43           36778


Q ss_pred             EEccCCCCCC--CChHHHhcCCCcceeecccCcc--c--ccCCccccccCCCCccEEEccCCC-Cc-cCCccccCCCCCc
Q psy10538        191 VDKRHCSLPN--VPEDVLRYFRSLEELLLDANHI--R--DLPKNYLDFFRLNRLRKLGLSDNE-IH-RLPPEIQNFENLV  262 (288)
Q Consensus       191 L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l--~--~l~~~~~~~~~l~~L~~L~l~~n~-l~-~~p~~l~~~~~L~  262 (288)
                      |++++|.+..  +...+-..-.+|+.|+++++.-  .  .+..-   ...++++..|||++|- ++ ..-..|.+++.|+
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---HHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            8888887652  1111111124577777776531  1  11111   4567888888888775 44 4444577888888


Q ss_pred             EEECcCCC
Q psy10538        263 ELDVSRNA  270 (288)
Q Consensus       263 ~L~L~~N~  270 (288)
                      ++.++.|.
T Consensus       342 ~lSlsRCY  349 (419)
T KOG2120|consen  342 HLSLSRCY  349 (419)
T ss_pred             eeehhhhc
Confidence            88888775

>KOG2982|consensus

Probab=97.57  E-value=2.6e-05  Score=66.21  Aligned_cols=148  Identities=17%  Similarity=0.119  Sum_probs=98.8

Q ss_pred             cCcCCcEEEcccCCCccc---CcccccCCCccEEecCCCCCcccCccc-cCCCCCcEEEccCCCCC-----------CCc
Q psy10538        124 YFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN-----------RQV  188 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~l---p~~~~~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~~~-----------~~L  188 (288)
                      ..+.++.+|+.+|.|+.+   ..-+.++|.+++|+++.|.+...-..+ ....+|+++.+.+.++.           +.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            356889999999999854   445678999999999999987322222 46678999999888665           356


Q ss_pred             cEEEccCCCCCCCC--h-HHHhcCCCcceeecccCccc---ccCCccccccCCCCccEEEccCCCCccCC--ccccCCCC
Q psy10538        189 EYVDKRHCSLPNVP--E-DVLRYFRSLEELLLDANHIR---DLPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFEN  260 (288)
Q Consensus       189 ~~L~l~~n~l~~~~--~-~~~~~~~~L~~L~l~~n~l~---~l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~  260 (288)
                      ++|+++.|.+..+-  . +.-..-+.++.+....|...   .+..-   ....+++..+.+..|.+....  +....++.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l---~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~  225 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL---SRIFPNVNSVFVCEGPLKTESSEKGSEPFPS  225 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH---HhhcccchheeeecCcccchhhcccCCCCCc
Confidence            77777777655322  1 11122345666666665543   12111   233467777888888887433  34567788


Q ss_pred             CcEEECcCCCCCCc
Q psy10538        261 LVELDVSRNAPSNV  274 (288)
Q Consensus       261 L~~L~L~~N~l~~i  274 (288)
                      +..|+|+.|+|.+.
T Consensus       226 ~~~LnL~~~~idsw  239 (418)
T KOG2982|consen  226 LSCLNLGANNIDSW  239 (418)
T ss_pred             chhhhhcccccccH
Confidence            88999999988744

>KOG3665|consensus

Probab=97.56  E-value=5.1e-05  Score=73.21  Aligned_cols=57  Identities=26%  Similarity=0.401  Sum_probs=29.6

Q ss_pred             cCCcEEEcccCCC-c-ccCccccc-CCCccEEecCCCCCc--ccCccccCCCCCcEEEccCC
Q psy10538        126 RSLEELLLDANHI-R-DLPKNFFR-LNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRN  182 (288)
Q Consensus       126 ~~L~~L~l~~n~i-~-~lp~~~~~-l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n  182 (288)
                      .+|++|+++|... . .+|..++. +|.|+.|.+++-.+.  ++..-..++++|..||+++.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT  183 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence            4566666666442 1 33443333 566666666665443  22222344566666666666

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.46  E-value=0.00031  Score=52.91  Aligned_cols=123  Identities=14%  Similarity=0.344  Sum_probs=50.6

Q ss_pred             cchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEcc
Q psy10538        117 YSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKR  194 (288)
Q Consensus       117 ~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~  194 (288)
                      ++..+|.+.++|+.+.+.. .+..++. .|....+++.+.+..+ +..++.. +..++.++.+.+..             
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-------------   67 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-------------   67 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-------------
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-------------
Confidence            4455566666777777663 4555544 4555556667766654 5555432 44444555555532             


Q ss_pred             CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCC
Q psy10538        195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENL  261 (288)
Q Consensus       195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L  261 (288)
                        .+..++...+..+++++.+++..+ ++.++...  +... +++.+.+.. .+..++. .|.++++|
T Consensus        68 --~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~--f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   68 --NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS--FSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             --TT-EE-TTTTTT-TTECEEEETTT--BEEHTTT--TTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             --cccccccccccccccccccccCcc-ccEEchhh--hcCC-CceEEEECC-CccEECCccccccccC
Confidence              233444455555666666666554 55555442  4444 666666554 3333332 34454444

>KOG2123|consensus

Probab=97.20  E-value=2.1e-05  Score=66.10  Aligned_cols=100  Identities=25%  Similarity=0.295  Sum_probs=58.7

Q ss_pred             CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCC
Q psy10538        148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK  227 (288)
Q Consensus       148 l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~  227 (288)
                      +.+.+.|++++|.+..+.- ...|+.|+.|.++-|              +++.+.+  +..|++|++|+|..|.|.++.+
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvN--------------kIssL~p--l~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVN--------------KISSLAP--LQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeecc--------------ccccchh--HHHHHHHHHHHHHhcccccHHH
Confidence            4455566666666664422 234566666666666              5555544  4456777777777777776654


Q ss_pred             ccccccCCCCccEEEccCCCCc-cCCc-----cccCCCCCcEEE
Q psy10538        228 NYLDFFRLNRLRKLGLSDNEIH-RLPP-----EIQNFENLVELD  265 (288)
Q Consensus       228 ~~~~~~~l~~L~~L~l~~n~l~-~~p~-----~l~~~~~L~~L~  265 (288)
                      -.+ +.++++|+.|+|..|.-. +-+.     .+..+|+|++||
T Consensus        81 L~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   81 LEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            222 556777777777777644 2221     245667777776

>KOG3665|consensus

Probab=97.06  E-value=0.00064  Score=65.77  Aligned_cols=108  Identities=22%  Similarity=0.298  Sum_probs=72.8

Q ss_pred             hcCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538        123 RYFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN  200 (288)
Q Consensus       123 ~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~  200 (288)
                      .-+|.|+.|.+.+-.+.  ++-..+.++++|..||++++.++.+ ..++.+++|++|.+.+=              .+..
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL--------------e~e~  209 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL--------------EFES  209 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC--------------CCCc
Confidence            34788999988887765  3344556688999999999988877 55778888888877654              2221


Q ss_pred             --CChHHHhcCCCcceeecccCcccccC-------CccccccCCCCccEEEccCCCCc
Q psy10538        201 --VPEDVLRYFRSLEELLLDANHIRDLP-------KNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       201 --~~~~~~~~~~~L~~L~l~~n~l~~l~-------~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                        .-.+.|. +++|+.||+|.......+       ++   -..+++|+.||.++..+.
T Consensus       210 ~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec---~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  210 YQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLEC---GMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHh---cccCccccEEecCCcchh
Confidence              1123444 788888888776544222       11   334778888888877665

>KOG2123|consensus

Probab=97.01  E-value=4.3e-05  Score=64.34  Aligned_cols=79  Identities=28%  Similarity=0.362  Sum_probs=66.8

Q ss_pred             CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEE
Q psy10538        187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVEL  264 (288)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L  264 (288)
                      ++++|+.++|.+..+  .+...++.|+.|.|+-|+|+++.+    +..|+.|+.|+|+.|.|.++..  .+.++|+|+.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            456666677788876  345679999999999999999987    8899999999999999997764  47899999999


Q ss_pred             ECcCCCC
Q psy10538        265 DVSRNAP  271 (288)
Q Consensus       265 ~L~~N~l  271 (288)
                      .|..|.=
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            9999964

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.95  E-value=0.0021  Score=48.25  Aligned_cols=119  Identities=13%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCc
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~  162 (288)
                      +..+++++.+.+.. .+.              .+....|.++++++.+.+.++ +..++. .|...+.++.+.+.. .+.
T Consensus         8 F~~~~~l~~i~~~~-~~~--------------~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~   70 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK--------------KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK   70 (129)
T ss_dssp             TTT-TT--EEEETS-T----------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred             HhCCCCCCEEEECC-Cee--------------EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence            55566788877753 333              667777888889999999875 777755 566676899999876 555


Q ss_pred             ccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCc
Q psy10538        163 RLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL  238 (288)
Q Consensus       163 ~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L  238 (288)
                      .++.. +..+++++.+.+..+               +..++...+... .++.+.+.. .++.++...  |..+++|
T Consensus        71 ~i~~~~F~~~~~l~~i~~~~~---------------~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~--F~~~~~l  128 (129)
T PF13306_consen   71 SIGDNAFSNCTNLKNIDIPSN---------------ITEIGSSSFSNC-NLKEINIPS-NITKIEENA--FKNCTKL  128 (129)
T ss_dssp             EE-TTTTTT-TTECEEEETTT----------------BEEHTTTTTT--T--EEE-TT-B-SS----G--GG-----
T ss_pred             ccccccccccccccccccCcc---------------ccEEchhhhcCC-CceEEEECC-CccEECCcc--ccccccC
Confidence            55443 555777777777543               344555556655 777777765 555565542  5555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.51  E-value=0.0007  Score=34.29  Aligned_cols=19  Identities=37%  Similarity=0.389  Sum_probs=10.9

Q ss_pred             CcEEECcCCCCCCcCcccc
Q psy10538        261 LVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       261 L~~L~L~~N~l~~ip~~~~  279 (288)
                      |++||+++|+++.||++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5556666666655555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308|consensus

Probab=96.42  E-value=2.4e-05  Score=72.27  Aligned_cols=171  Identities=28%  Similarity=0.323  Sum_probs=111.8

Q ss_pred             CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcccccC-CCccEEecCCCCCc
Q psy10538         89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRL-NRLRKLGLSDNEIH  162 (288)
Q Consensus        89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l-~~L~~L~l~~n~l~  162 (288)
                      .+..+.|.+|.+..-.          .......+...++|+.|++++|.+..     +-..+... +.+++|++..|.++
T Consensus        88 ~l~~L~L~~~~l~~~~----------~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~  157 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRG----------AEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT  157 (478)
T ss_pred             hHHHhhhhhCccccch----------HHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence            3667777777766321          11223446667788888888888872     12222233 56777888888776


Q ss_pred             -----ccCccccCCCCCcEEEccCCCCC------------------CCccEEEccCCCCCCCC----hHHHhcCCC-cce
Q psy10538        163 -----RLPPEIQNFENLVELDVSRNGCN------------------RQVEYVDKRHCSLPNVP----EDVLRYFRS-LEE  214 (288)
Q Consensus       163 -----~l~~~l~~~~~L~~L~l~~n~~~------------------~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~  214 (288)
                           .+...+.....++.++++.|.+.                  .++++|++.+|.++...    ...+...++ +..
T Consensus       158 ~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e  237 (478)
T KOG4308|consen  158 SEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE  237 (478)
T ss_pred             ccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence                 33444555677888888888652                  36788888888877321    122333444 677


Q ss_pred             eecccCcccc-----cCCccccccCC-CCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCC
Q psy10538        215 LLLDANHIRD-----LPKNYLDFFRL-NRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       215 L~l~~n~l~~-----l~~~~~~~~~l-~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      +++.+|.+.+     +.+.   +..+ +.++.++++.|.|+     .++..+..+++++.++++.|.+.
T Consensus       238 l~l~~n~l~d~g~~~L~~~---l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  238 LDLASNKLGDVGVEKLLPC---LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhcCcchHHHHHHHHH---hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            8898888763     3333   4455 67889999999987     34445667788999999999875

>KOG2739|consensus

Probab=96.31  E-value=0.0028  Score=52.98  Aligned_cols=40  Identities=28%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             hcCcCCcEEEcccC--CCc-ccCcccccCCCccEEecCCCCCc
Q psy10538        123 RYFRSLEELLLDAN--HIR-DLPKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus       123 ~~l~~L~~L~l~~n--~i~-~lp~~~~~l~~L~~L~l~~n~l~  162 (288)
                      ..+++|+.|.++.|  ++. .++.....+++|+++.+++|++.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34455555555555  333 33333333455555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.21  E-value=0.0017  Score=32.80  Aligned_cols=18  Identities=39%  Similarity=0.674  Sum_probs=10.5

Q ss_pred             CcEEEcccCCCcccCccc
Q psy10538        128 LEELLLDANHIRDLPKNF  145 (288)
Q Consensus       128 L~~L~l~~n~i~~lp~~~  145 (288)
                      |++|++++|+++.+|++|
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            556666666666555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.63  E-value=0.0074  Score=28.37  Aligned_cols=16  Identities=38%  Similarity=0.482  Sum_probs=7.0

Q ss_pred             CCcEEECcCCCCCCcC
Q psy10538        260 NLVELDVSRNAPSNVD  275 (288)
Q Consensus       260 ~L~~L~L~~N~l~~ip  275 (288)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666655554

...

>KOG2739|consensus

Probab=95.61  E-value=0.007  Score=50.66  Aligned_cols=82  Identities=24%  Similarity=0.315  Sum_probs=55.5

Q ss_pred             CccEEEccCCCCCCCChHHHhcCCCcceeecccCc--cc-ccCCccccccCCCCccEEEccCCCCccCC--ccccCCCCC
Q psy10538        187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH--IR-DLPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFENL  261 (288)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~--l~-~l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~L  261 (288)
                      .++.+.+.+..++.+.  .+..+++|+.|.++.|.  +. .++.-   ...+++|+++.+++|+|+.+.  ..+..+++|
T Consensus        44 ~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             chhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3444444444655432  23347899999999994  43 34432   455699999999999988432  135677889


Q ss_pred             cEEECcCCCCCC
Q psy10538        262 VELDVSRNAPSN  273 (288)
Q Consensus       262 ~~L~L~~N~l~~  273 (288)
                      ..||+..|....
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            999998887664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.09  E-value=0.019  Score=30.11  Aligned_cols=21  Identities=38%  Similarity=0.439  Sum_probs=14.4

Q ss_pred             CCCcEEECcCCCCCCcCcccc
Q psy10538        259 ENLVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       259 ~~L~~L~L~~N~l~~ip~~~~  279 (288)
                      ++|+.|+|++|+|+.+|+.++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            466777777777777776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.09  E-value=0.019  Score=30.11  Aligned_cols=21  Identities=38%  Similarity=0.439  Sum_probs=14.4

Q ss_pred             CCCcEEECcCCCCCCcCcccc
Q psy10538        259 ENLVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       259 ~~L~~L~L~~N~l~~ip~~~~  279 (288)
                      ++|+.|+|++|+|+.+|+.++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            466777777777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.99  E-value=0.015  Score=27.31  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=5.6

Q ss_pred             CCcEEEcccCCCccc
Q psy10538        127 SLEELLLDANHIRDL  141 (288)
Q Consensus       127 ~L~~L~l~~n~i~~l  141 (288)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344445555444443

...

>KOG0473|consensus

Probab=94.44  E-value=0.00075  Score=55.60  Aligned_cols=81  Identities=17%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             ccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECc
Q psy10538        188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS  267 (288)
Q Consensus       188 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~  267 (288)
                      .+.||++.|++..+-.. ++.++.+..++++.|.+..+|..   ++....++.+++..|..+..|..++..++++++++.
T Consensus        44 ~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d---~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   44 VTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD---AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh---HHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            33444444466554433 44467788899999999999988   888888999999899999999999999999999999


Q ss_pred             CCCCC
Q psy10538        268 RNAPS  272 (288)
Q Consensus       268 ~N~l~  272 (288)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99865

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.46  E-value=0.062  Score=28.08  Aligned_cols=19  Identities=37%  Similarity=0.557  Sum_probs=11.0

Q ss_pred             cCCcEEEcccCCCcccCcc
Q psy10538        126 RSLEELLLDANHIRDLPKN  144 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~  144 (288)
                      ++|++|++++|.|+.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.46  E-value=0.062  Score=28.08  Aligned_cols=19  Identities=37%  Similarity=0.557  Sum_probs=11.0

Q ss_pred             cCCcEEEcccCCCcccCcc
Q psy10538        126 RSLEELLLDANHIRDLPKN  144 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~  144 (288)
                      ++|++|++++|.|+.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666665543

>KOG0473|consensus

Probab=91.25  E-value=0.0062  Score=50.37  Aligned_cols=94  Identities=22%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             CcccCc-ccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceee
Q psy10538        138 IRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELL  216 (288)
Q Consensus       138 i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  216 (288)
                      ++++|- .+......+.||++.|++-.+...++-++.+..++++.|              .+..+|.+... ...+..++
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn--------------q~~~~~~d~~q-~~e~~~~~   94 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN--------------QIKFLPKDAKQ-QRETVNAA   94 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh--------------hHhhChhhHHH-HHHHHHHH
Confidence            334443 444556677777777777666666665666666666666              77778877554 66788888


Q ss_pred             cccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        217 LDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       217 l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      ...|..+..|..   ++..+.++++++.++.+.
T Consensus        95 ~~~n~~~~~p~s---~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   95 SHKNNHSQQPKS---QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hhccchhhCCcc---ccccCCcchhhhccCcch
Confidence            889999999988   889999999999988865

>KOG4308|consensus

Probab=88.13  E-value=0.0062  Score=56.49  Aligned_cols=155  Identities=23%  Similarity=0.231  Sum_probs=87.0

Q ss_pred             ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC-cCCcEEEcccCCCcc-----cCcccccCCCccEEe
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF-RSLEELLLDANHIRD-----LPKNFFRLNRLRKLG  155 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~  155 (288)
                      ..+.....|..+++++|.+...  -.......        +... +.+++|++..+.++.     +.+.+.....++.++
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~~~--g~~~l~~~--------l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~  178 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLGDE--GARLLCEG--------LRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELD  178 (478)
T ss_pred             HHhcccccHhHhhcccCCCccH--hHHHHHhh--------cccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHH
Confidence            4566788899999999998832  11111111        1111 344445555555541     233444455566666


Q ss_pred             cCCCCCc-----ccCccc----cCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCCh----HHHh
Q psy10538        156 LSDNEIH-----RLPPEI----QNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVPE----DVLR  207 (288)
Q Consensus       156 l~~n~l~-----~l~~~l----~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~~----~~~~  207 (288)
                      ++.|.+.     .++..+    ....++++|.+.++.++               ..+.++++..|.+...-.    ..+.
T Consensus       179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~  258 (478)
T KOG4308|consen  179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS  258 (478)
T ss_pred             HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence            6666552     122222    23556666666666554               124456777777663211    1122


Q ss_pred             cC-CCcceeecccCccc-----ccCCccccccCCCCccEEEccCCCCc
Q psy10538        208 YF-RSLEELLLDANHIR-----DLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       208 ~~-~~L~~L~l~~n~l~-----~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      .+ ..++.++++.|.++     .+...   +..++.++.+.++.|.+.
T Consensus       259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~---l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  259 VLSETLRVLDLSRNSITEKGVRDLAEV---LVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             ccchhhhhhhhhcCCccccchHHHHHH---HhhhHHHHHhhcccCccc
Confidence            23 56788888888887     33443   556678888888888876

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.59  E-value=0.48  Score=24.84  Aligned_cols=18  Identities=33%  Similarity=0.434  Sum_probs=13.6

Q ss_pred             CCCcEEECcCCCCCCcCc
Q psy10538        259 ENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       259 ~~L~~L~L~~N~l~~ip~  276 (288)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357778888888887776

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.36  E-value=0.89  Score=23.87  Aligned_cols=16  Identities=44%  Similarity=0.592  Sum_probs=12.1

Q ss_pred             CCCcEEECcCCCCCCc
Q psy10538        259 ENLVELDVSRNAPSNV  274 (288)
Q Consensus       259 ~~L~~L~L~~N~l~~i  274 (288)
                      .+|+.|+++.|+|+.|
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            5678888888888655

>KOG3864|consensus

Probab=80.58  E-value=0.28  Score=39.80  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=15.1

Q ss_pred             CCccEEEccCCC-CccCC-ccccCCCCCcEEEC
Q psy10538        236 NRLRKLGLSDNE-IHRLP-PEIQNFENLVELDV  266 (288)
Q Consensus       236 ~~L~~L~l~~n~-l~~~p-~~l~~~~~L~~L~L  266 (288)
                      ++|+.|++++|. ||+-. ..+..+++|+.|.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            455555555554 54221 23445555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3cqc_A	270	Nucleoporin Nup107/nup133 Interaction Complex Lengt		1e-09
3i4r_A	277	Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapi		1e-09
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-09
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-06
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-05
3cqg_A	246	Nucleoporin Nup107/nup133 Interaction Complex, Delt		8e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-04

>pdb|3CQC|A Chain A, Nucleoporin Nup107/nup133 Interaction Complex Length = 270

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 20  KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79
           KI +D+I  + +  +     S   + + ++IRE+LC + YL A E FNEWF + NS  P+
Sbjct: 59  KIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSV-PQ 117
Query: 80  GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV 121
            P  I +   ++E+V HE + ++YE     W   L   + DV
Sbjct: 118 KPALIPQ-PTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADV 158

>pdb|3I4R|A Chain A, Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapiens Length = 277

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 20  KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79
           KI +D+I  + +  +     S   + + ++IRE+LC + YL A E FNEWF + NS  P+
Sbjct: 59  KIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSV-PQ 117
Query: 80  GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV 121
            P  I +   ++E+V HE + ++YE     W   L   + DV
Sbjct: 118 KPALIPQ-PTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADV 158

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           KL+    L+   +L  L+L  N ++ LP   F +L  L++L L +N++  LP  +  F+ 
Sbjct: 74  KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDK 131
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L  L            Y+   H  L ++P+ V     +L  L LD N ++ LP+   D  
Sbjct: 132 LTNL-----------TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD-- 178
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
           +L +L++L L+DN++  +P  +  F+ L  L
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGV--FDRLTSL 207

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           KL+    L+   +L  L+L  N ++ LP   F +L  L++L L +N++  LP  +  F+ 
Sbjct: 74  KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDK 131
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L  L            Y++  H  L ++P+ V     +L EL L  N ++ LP+   D  
Sbjct: 132 LTNL-----------TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD-- 178
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
           +L +L+ L L  N++  +P  +  F+ L  L
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGV--FDRLTSL 207

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 129 EELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNR 186
           ++L L +N +  LP K F RL +LR L L+DN++  LP  I +  +NL  L V+ N    
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN---- 95
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
                      L  +P  V     +L EL LD N ++ LP    D   L +L  L L  N
Sbjct: 96  ----------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD--SLTKLTYLSLGYN 143
Query: 247 EIHRLPPEIQNFENLVEL 264
           E+  LP  +  F+ L  L
Sbjct: 144 ELQSLPKGV--FDKLTSL 159

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 112 SKLKLYS--KDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI 168
           SK K+++  K V  +F  LE+L L  N I  +  N F+ L  L KL LS N +  +   +
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
             FENL +L+V     N      D+    LPN           L+EL LD N ++ +P  
Sbjct: 343 --FENLDKLEVLDLSYNHIRALGDQSFLGLPN-----------LKELALDTNQLKSVPDG 389
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI 255
             D  RL  L+K+ L  N      P I
Sbjct: 390 IFD--RLTSLQKIWLHTNPWDCSCPRI 414

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP-EIQ 169
           ++L++      R    L  L LD   +++L    FR L  L+ L L DN +  LP    +
Sbjct: 90  AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI-RDLPKN 228
           +  NL  L +  N               +P+VPE   R   SL+ LLL  NH+ R  P  
Sbjct: 150 DLGNLTHLFLHGN--------------RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI 255
           + D   L RL  L L  N +  LP E+
Sbjct: 196 FRD---LGRLMTLYLFANNLSMLPAEV 219

>pdb|3CQG|A Chain A, Nucleoporin Nup107/nup133 Interaction Complex, Delta Finger Mutant Length = 246

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 20  KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79
           KI +D+I  + +  +     S   + + ++IRE+LC + YL A E FNEWF + NS  P 
Sbjct: 59  KIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSV-PG 117
Query: 80  G 80
           G
Sbjct: 118 G 118

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
            G   Q  Y+D    SL ++P  V     SL +L L  N ++ LP     F +L  L  L
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYL 81
Query: 242 GLSDNEIHRLPPEIQNFENLVEL 264
            LS N++  LP  +  F+ L +L
Sbjct: 82  NLSTNQLQSLPNGV--FDKLTQL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
3cqc_A	270	Nuclear pore complex protein NUP107; nucleoporin,	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 2e-25
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
               L L +  +   P   FRL+ L+ + +    +  LP  +Q F  L  L ++RN    
Sbjct: 82  GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA 141

Query: 183 -----GCNRQVEYVDKRHCS-LPNVPEDV--------LRYFRSLEELLLDANHIRDLPKN 228
                    ++  +  R C  L  +PE +         +   +L+ L L+   IR LP  
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA- 200

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
                 L  L+ L + ++ +  L P I +   L ELD+   
Sbjct: 201 --SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 7e-22
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
              +    +   +L+ L L+   IR LP +   L  L+ L + ++ +  L P I +   L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFF 233
            ELD+   GC             L N P         L+ L L D +++  LP +     
Sbjct: 232 EELDLR--GCTA-----------LRNYPPI-FGGRAPLKRLILKDCSNLLTLPLD---IH 274

Query: 234 RLNRLRKLGLSDNE-IHRLPPEIQNFENLVELDVSRNAPSNVDS 276
           RL +L KL L     + RLP  I        + V  +  + +D 
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 7e-19
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 19/161 (11%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNR--LRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
           + +        ++          +     L L    + + P +     +L  + +     
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 183 -------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKN------ 228
                       +E +      L  +P   +     L EL +     + +LP+       
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             +   L  L+ L L    I  LP  I N +NL  L +  +
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD-NEIHRLPPEIQNFENLVELDVSRNGC 184
           ++L+ L +  + +  L      L +L +L L     +   PP       L  L +    C
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--DC 263

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKLGL 243
           +            L  +P D +     LE+L L     +  LP       +L     + +
Sbjct: 264 SN-----------LLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL---IAQLPANCIILV 308

Query: 244 SDNEIHRLPPE 254
             +   +L   
Sbjct: 309 PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 13/153 (8%), Positives = 31/153 (20%), Gaps = 43/153 (28%)

Query: 118 SKDVLRYFRSLEELLL-DANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
           S     +    E L    +  +R        L++ ++   +D           N  N   
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHDV---LSQWQRHYNADRNRWHSAWRQANSNNP-- 58

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
                                               +        ++      L+     
Sbjct: 59  ------------------------------------QIETRTGRALKATADL-LEDATQP 81

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
               L L    + + P +     +L  + +   
Sbjct: 82  GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 126 RSLEEL-LLDANHIRDLPKNFFRLNRLRKLGLSDNE-IHRLPPEIQNFENLVELDVSRNG 183
             L+ L L D +++  LP +  RL +L KL L     + RLP  I        + V  + 
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 184 CNRQVEYVDKRHCSLPNVP 202
             +  ++   R  + P  P
Sbjct: 313 QAQLDQH---RPVARPAEP 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.2 bits (237), Expect = 2e-22
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
           ++D    F  LEEL L+ N +  +    F  L  LR LGL  N +  +P  +     NL 
Sbjct: 48  NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
           +LD+S N               +  + + + +   +L+ L +  N +  +      F  L
Sbjct: 108 KLDISEN--------------KIVILLDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGL 151

Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
           N L +L L    +  +P E   +   L+ L +     + +    
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 3e-20
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
                 L L  N I+ L ++ F     L +L L++N +  + P    N  NL  L +  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L  +P  V     +L +L +  N I  L      F  L  L+ L 
Sbjct: 91  --------------RLKLIPLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLE 134

Query: 243 LSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
           + DN++  +         +L +L + +   +++ +
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 2e-19
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 118 SKDVLRYFRSLEELLL-DANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
                +    L+ L +    ++  +  N      L  L ++   +  +P   +++   L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L++S N               +  +   +L     L+E+ L    +  +      F  L
Sbjct: 252 FLNLSYN--------------PISTIEGSMLHELLRLQEIQLVGGQLAVVEPY--AFRGL 295

Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           N LR L +S N++  L   +  +  NL  L +  N
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 17/180 (9%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QN 170
           +LKL    V     +L +L +  N I  L    F+ L  L+ L + DN++  +       
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 171 FENLVELDVSRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL-DA 219
             +L +L + +                +  +  RH ++  + +   +    L+ L +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSM 278
            ++  +  N         L  L ++   +  +P   +++   L  L++S N  S ++ SM
Sbjct: 211 PYLDTMTPN---CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL 215
                   +P  I        LD+ +N               +  + +D    F  LEEL
Sbjct: 18  CHRKRFVAVPEGI--PTETRLLDLGKN--------------RIKTLNQDEFASFPHLEEL 61

Query: 216 LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            L+ N +  +      F  L  LR LGL  N +  +P  +     NL +LD+S N
Sbjct: 62  ELNENIVSAVEPGA--FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
               +R+   L  L L  N I  +  +    L RL+++ L   ++  + P   +    L 
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
            L+VS N               L  + E V     +LE L+LD+N + 
Sbjct: 300 VLNVSGN--------------QLTTLEESVFHSVGNLETLILDSNPLA 333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.0 bits (229), Expect = 5e-22
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
                     L  L LD   +++L    FR L  L+ L L DN +  LP +  ++  NL 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L +  N               + +VPE   R   SL+ LLL  N +  +  +   F  L
Sbjct: 157 HLFLHGN--------------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPH--AFRDL 200

Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            RL  L L  N +  LP E       L  L ++ N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 3e-20
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNE-IHRLPPEI-QNFENLVE 176
              R  R+L  L L +N +  +    F  L  L +L LSDN  +  + P        L  
Sbjct: 50  ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
           L + R                L  +   + R   +L+ L L  N ++ LP +   F  L 
Sbjct: 110 LHLDRC--------------GLQELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLG 153

Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            L  L L  N I  +P    +   +L  L + +N
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 125 FRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             + + + L  N I  +P   FR    L  L L  N + R+          L +LD+S N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L +V          L  L LD   +++L      F  L  L+ L 
Sbjct: 91  -------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLY 135

Query: 243 LSDNEIHRLPPEI-QNFENLVELDVSRN 269
           L DN +  LP +  ++  NL  L +  N
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGN 163

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 1e-21
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 26/177 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
            SL  L L  N +  +P   F  L++LR+L L +N I  +P        +L+ LD+    
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL- 181

Query: 184 CNR-------------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
             +              ++Y++   C++ ++P   L     LEEL +  NH  ++     
Sbjct: 182 -KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPG-- 236

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNA----PSNVDSSMVYLK 282
            F  L+ L+KL + ++++  +         +LVEL+++ N     P ++ + + YL 
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 3e-21
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVEL 177
           D  R+   LE L L  N IR +    F  L  L  L L DN +  +P    +    L EL
Sbjct: 93  DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFFRLN 236
            +  N               + ++P        SL  L L +   +  + +    F  L 
Sbjct: 153 WLRNN--------------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG--AFEGLF 196

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L+ L L    I  + P +     L EL++S N
Sbjct: 197 NLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGN 228

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 7e-20
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             +   L L  N+I+ +  + F  L+ L  L L  N I ++         +L  L++  N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L  +P     Y   L EL L  N I  +P     F R+  L +L 
Sbjct: 134 --------------WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY--AFNRVPSLMRLD 177

Query: 243 LSD-NEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
           L +  ++  +     +   NL  L++      ++ +
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 16/101 (15%)

Query: 122 LRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDV 179
           L     LEEL +  NH  ++    F  L+ L+KL + ++++  +         +LVEL++
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
           + N              +L ++P D+    R L EL L  N
Sbjct: 274 AHN--------------NLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
                    SL++L +  + +  + +N F  L  L +L L+ N +  LP ++      LV
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 176 ELDVSRN 182
           EL +  N
Sbjct: 294 ELHLHHN 300

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVE 176
           S +    F  L+EL L A H+ +LP     L+ L+KL LS N+   L      NF +L  
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
           L +  N                  +    L    +L EL L  + I       L    L+
Sbjct: 330 LSIKGN-------------TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            L+ L LS NE   L  E  +    L  LD++  
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 19/148 (12%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
             S E L    N +  +    F RL  L  L L+  +I+ +  +  Q+   L  L ++ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L  + E  L   ++L+ L      I  +            L  L 
Sbjct: 92  --------------PLIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQKTLESLY 135

Query: 243 LSDNEIHRLP-PEIQNFENLVELDVSRN 269
           L  N I  +  P+    E L  LD   N
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
                    +L  L L    I  + ++ F+  +RL  L L+ N +  +        + L 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 176 ELDVSRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
            L   +              + +E +      + ++          L+ L    N I  L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            K  +   +      L L+ N+I  + P   +      L+    
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 5e-18
 Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 21/170 (12%)

Query: 118 SKDVLRYFRSLEELLLD--ANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE---IQNFE 172
           SK+ +   +    L L+   N I  +    F     + L     +   +  +       +
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 173 NLVELDVSRN------------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
           +L                     C   VE ++ +     N+  +    F  L+EL L A 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 221 HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
           H+ +LP        L+ L+KL LS N+   L      NF +L  L +  N
Sbjct: 289 HLSELPS---GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 7e-17
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
           S+E + L  ++  ++  N F   + L++L L+   +  LP  +     L +L +S N   
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN--- 311

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                         N+ +     F SL  L +  N  R L         L  LR+L LS 
Sbjct: 312 -----------KFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELDLSH 359

Query: 246 NEIHRLPPEIQNFENLV---ELDVSRNAPSNVDSSM 278
           ++I           NL     L++S N P ++ +  
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN 170
           K +   +     F SL  L +  N  R +L       L  LR+L LS ++I         
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
             NL  L           + ++  +    ++  +  +    LE L L    ++       
Sbjct: 372 LRNLSHL-----------QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            F  L+ L+ L LS + +     ++      L  L++  N
Sbjct: 421 -FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 18/177 (10%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE--IQNFENL 174
               LR    L+ L L  N    L    F+   +L  L L+   +     +   QN   L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 175 VELDVSRN----------GCNRQVEYVDKRHCSLPNVPE---DVLRYFRSLEELLLDANH 221
             L++S +               +++++ +    P       + L+    LE L+L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
           +  + ++   F  L  +  + LS N +     E  +    + L+++ N  S +  S+
Sbjct: 488 LSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 21/174 (12%), Positives = 46/174 (26%), Gaps = 18/174 (10%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLP-PEIQN 170
            L   ++  L   ++L+ L      I  +          L  L L  N I  +  P+   
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 171 FENLVELDVSRNG------------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
            E L  LD   N                    ++     +  +           + L   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFG 210

Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFE---NLVELDVSRN 269
                 +    L    +  L      D +   + P +       ++  +++ ++
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)

Query: 116 LYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE----IQN 170
             ++   +    L+ L L  + +    +  F  L  L+ L L  N   +   +    +Q 
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
              L  L +S               C L ++ +      + +  + L  N +        
Sbjct: 475 LGRLEILVLS--------------FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI--- 517

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           +     +   L L+ N I  + P +         +++ +N
Sbjct: 518 EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 16/174 (9%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLR--KLGLSDNEIHRLPPEIQ 169
            +             L+ L    N I  L K     L +     L L+ N+I  + P   
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
           +      L+                   L           +SL     +     D+    
Sbjct: 200 DSAVFQSLNFGGT------------QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 230 LDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSMVYLK 282
            +      +  + L  +    +       F  L ELD++    S + S +V L 
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 20/152 (13%)

Query: 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQ 187
           +    +   + ++P           L  S N +  +         NL  LD++R      
Sbjct: 15  KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC----- 67

Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
                     +  + ED  +    L+ L+L AN +  + +          L+ L      
Sbjct: 68  ---------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALKHLFFIQTG 116

Query: 248 IHRLPPE-IQNFENLVELDVSRNAPSNVDSSM 278
           I  +    + N + L  L +  N  S++    
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 22/142 (15%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDL----PKNFFRLNRLRKLGLSDNEIHRLPPEI 168
            L + S+ +     +L+ L L  NH          +   L RL  L LS  ++  +    
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 169 -QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
             + + +  +D+S N               L +   + L + + +  L L +NHI  +  
Sbjct: 496 FTSLKMMNHVDLSHN--------------RLTSSSIEALSHLKGI-YLNLASNHISIILP 540

Query: 228 NYLDFFRLNRLRKLGLSDNEIH 249
           +      L++ R + L  N + 
Sbjct: 541 S--LLPILSQQRTINLRQNPLD 560

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.1 bits (229), Expect = 2e-21
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 20/165 (12%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVEL 177
           +  ++ R LE L L  NHIR +    F  L  L  L L DN +  +P         L EL
Sbjct: 82  NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 178 DVSRN-----------GCNRQVEYVDKRHC-SLPNVPEDVLRYFRSLEELLLDANHIRDL 225
            +  N                +  +D      L  + E       +L  L L   ++R++
Sbjct: 142 WLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           P    +   L +L +L LS N +  + P   Q   +L +L + ++
Sbjct: 201 P----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 6e-21
 Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 14/164 (8%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSD-NEIHRLPPEI-QNFENL 174
                 Y   L+EL L  N I  +P   F  +  LR+L L +   +  +     +   NL
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 175 VELDVSRNGCNR--------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
             L+++              +++ +D     L  +     +    L++L +  + I+ + 
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 227 KNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           +N   F  L  L ++ L+ N +  LP ++     +L  + +  N
Sbjct: 248 RN--AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 1e-19
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             +   L L  N I+ +  N F  L  L  L LS N I  +         NL  L++  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L  +P     Y   L+EL L  N I  +P     F R+  LR+L 
Sbjct: 123 --------------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLD 166

Query: 243 LSD-NEIHRLPPEI-QNFENLVELDVSRN 269
           L +   +  +     +   NL  L+++  
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMC 195

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 6e-21
 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 23/149 (15%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFE--NLVELDVSR 181
             SL EL +  N IR +PK  F  L  +  + +  N +     E   F+   L  L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
                           L  +P+D+     +L EL LD N I+ +     D  R ++L +L
Sbjct: 182 A--------------KLTGIPKDL---PETLNELHLDHNKIQAIELE--DLLRYSKLYRL 222

Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           GL  N+I  +          L EL +  N
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNN 251

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 118 SKDVLRYFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV 175
            K V    R++  + +  N + +       F   +L  L +S+ ++  +P ++   E L 
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLN 196

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
           EL +  N               +  +  + L  +  L  L L  N IR +         L
Sbjct: 197 ELHLDHN--------------KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG--SLSFL 240

Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             LR+L L +N++ R+P  + + + L  + +  N
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
            KD  +  + L  L+L  N I  + +  F  L +L+KL +S N +  +PP +    +LVE
Sbjct: 70  RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVE 127

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
           L +  N               +  VP+ V    R++  + +  N + +       F  L 
Sbjct: 128 LRIHDN--------------RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L  L +S+ ++  +P ++   E L EL +  N
Sbjct: 174 -LNYLRISEAKLTGIPKDL--PETLNELHLDHN 203

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 8e-17
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
                 L L  N I +L K+ F  L  L  L L +N+I ++  +       L +L +S+N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L  +P ++     SL EL +  N IR +PK    F  L  +  + 
Sbjct: 113 --------------HLVEIPPNL---PSSLVELRIHDNRIRKVPKG--VFSGLRNMNCIE 153

Query: 243 LSDNEIHRLPPEIQNFE--NLVELDVSRNAPSNVDSSM 278
           +  N +     E   F+   L  L +S    + +   +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 24/154 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             +L EL LD N I+ +      R ++L +LGL  N+I  +          L EL +  N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN----YLDFFRLNRL 238
                          L  VP   L   + L+ + L  N+I  +  N         +    
Sbjct: 252 --------------KLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 239 RKLGLSDNEI--HRLPPEI-QNFENLVELDVSRN 269
             + L +N +    + P   +   + + +     
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 8e-16
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 27/151 (17%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
            L  L +    +  +PK+      L +L L  N+I  +  E    +  L  L +  N   
Sbjct: 173 KLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN--- 227

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                       +  +    L +  +L EL LD N +  +P        L  L+ + L  
Sbjct: 228 -----------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG---LPDLKLLQVVYLHT 273

Query: 246 NEIHRLPPEI-------QNFENLVELDVSRN 269
           N I ++                   + +  N
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 22/153 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
           R L++L +  NH+ ++P N      L +L + DN I ++P  +     N+  +++  N  
Sbjct: 102 RKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-- 157

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                                      L  L +    +  +PK+  +      L +L L 
Sbjct: 158 ----------PLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDLPE-----TLNELHLD 201

Query: 245 DNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
            N+I  +  E    +  L  L +  N    +++
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 23/145 (15%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
            L  +      ++ +PK          L L +N+I  L  +  +  ++L  L +  N   
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--- 88

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                       +  + E      R L++L +  NH+ ++P N         L +L + D
Sbjct: 89  -----------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS-----SLVELRIHD 132

Query: 246 NEIHRLPPEI-QNFENLVELDVSRN 269
           N I ++P  +     N+  +++  N
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGN 157

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 21/136 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
             + L  +  L  L L  N IR +       L  LR+L L +N++ R+P  + + + L  
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR------SLEELLLDANHIRDLPKNYL 230
           + +  N              ++  V  +                + L  N +        
Sbjct: 269 VYLHTN--------------NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 231 DFFRLNRLRKLGLSDN 246
            F  +     +   + 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.5 bits (225), Expect = 6e-21
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
              +L  FR +E L L+   I ++    F   + ++KL +  N I  LPP + QN   L 
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L + RN               L ++P  +      L  L +  N++  +  +   F   
Sbjct: 121 VLVLERN--------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQAT 164

Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
             L+ L LS N +  +        +L   +VS N  S +   +
Sbjct: 165 TSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLAIPI 205

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 7e-20
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 21/174 (12%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L    SL    +  N +  L         + +L  S N I+ +   +     L  L +  
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQH 235

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N             +  VD  +  L  +        + LE L +  N +  L    L   
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQ 292

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA----PSNVDSSMVYLKL 283
            +  L+ L LS N +  +      F+ L  L +  N+      +   ++  L L
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 7e-20
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 124 YFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSR 181
              + + +    + +R LP        ++  L L+D +I  +          + +L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N              ++  +P  V +    L  L+L+ N +  LP+    F    +L  L
Sbjct: 103 N--------------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTL 146

Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
            +S+N + R+  +  Q   +L  L +S N  ++VD S+
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 29/172 (16%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
                 Y  ++++L +  N IR LP + F+ +  L  L L  N++  LP  I  N   L 
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L +S N              +L  + +D  +   SL+ L L +N +  +         +
Sbjct: 145 TLSMSNN--------------NLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLI 185

Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA----PSNVDSSMVYLKL 283
             L    +S N +  L   I     + ELD S N+       V+  +  LKL
Sbjct: 186 PSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVELTILKL 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 17/172 (9%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
             D  +   SL+ L L +N +  +  +      L    +S N +  L   I     + EL
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP--SLFHANVSYNLLSTLAIPI----AVEEL 210

Query: 178 DVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
           D S N         N ++  +  +H +L +     L  +  L E+ L  N +  +  +  
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYH-- 266

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
            F ++ RL +L +S+N +  L    Q    L  LD+S N   +V+ +     
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 32/156 (20%), Positives = 49/156 (31%), Gaps = 44/156 (28%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFEN 173
            L     L  +  L E+ L  N +  +  + F  + RL +L +S+N +  L    Q    
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L  LD+S                                       NH+  + +N     
Sbjct: 297 LKVLDLSH--------------------------------------NHLLHVERN---QP 315

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           + +RL  L L  N I  L         L  L +S N
Sbjct: 316 QFDRLENLYLDHNSIVTLKLS--THHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 21/132 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
                   + LE L +  N +  L      +  L+ L LS N +  +      F+ L  L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
            +  N              S+  +         +L+ L L  N         L       
Sbjct: 324 YLDHN--------------SIVTLKLST---HHTLKNLTLSHNDWDCNSLRAL----FRN 362

Query: 238 LRKLGLSDNEIH 249
           + +  + D + H
Sbjct: 363 VARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 141 LPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP 199
           +  N         + +           E     N   +    +              ++ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS--------------TMR 58

Query: 200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNF 258
            +P  +L  FR +E L L+   I ++      F   + ++KL +  N I  LPP + QN 
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116

Query: 259 ENLVELDVSRN 269
             L  L + RN
Sbjct: 117 PLLTVLVLERN 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 13/178 (7%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDV 179
              +  L  L +  N I  L     + L  L+ L L  NE+ +L  +      NL EL +
Sbjct: 45  FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104

Query: 180 SRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
             N             + +  +D  H  L +          +L+ELLL  N I+ L    
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 230 LDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKLGRK 286
           LD F  + L+KL LS N+I    P        L  L ++        +  + L+L   
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKN---FFRLNRLRKLGLSDNEIHRLPPE-I 168
           K    +++      SL+ L+L    ++++  +   F  L  L  L LS+N I  +  + +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
           +  E L  LD+  N     +  + K   + P  P   L+    L  L L++N   ++P  
Sbjct: 501 EGLEKLEILDLQHN----NLARLWKH--ANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSS 277
              F  L  L+ + L  N ++ LP  +  N  +L  L++ +N  ++V+  
Sbjct: 555 --VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 8e-19
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)

Query: 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRN 182
             L  L L  N I  +  + F  L  L  L L  NEI +     E +  EN+ E+ +S N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                             +  +      SL+ L+L    ++++  +   F  L  L  L 
Sbjct: 441 --------------KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 243 LSDNEIHRLPPE-IQNFENLVELDVSRN 269
           LS+N I  +  + ++  E L  LD+  N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 18/170 (10%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
           S     +  +L EL L +N I+ +  N F     L  L LS N +           ENL 
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 176 ELDVSRN------------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI- 222
           EL +S N              N  ++ ++     +             L  L L+   + 
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI---QNFENLVELDVSRN 269
             L +          +R L LS++++            + NL  LD+S N
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 25/163 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRL---PPEIQNFEN 173
           +    R   ++ E+ L  N    L +N F  +  L++L L    +  +   P   Q   N
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN----- 228
           L  LD+S              + ++ N+ +D+L     LE L L  N++  L K+     
Sbjct: 482 LTILDLS--------------NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 229 -YLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
                  L+ L  L L  N    +P E  ++   L  +D+  N
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 7e-17
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 20/145 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
           S E        +  +P +      +  L L+ N++ RLP      +  L  LDV  N   
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--- 59

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                      ++  +  ++ +    L+ L L  N +  L      F     L +L L  
Sbjct: 60  -----------TISKLEPELCQKLPMLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMS 106

Query: 246 NEIHRLPPE-IQNFENLVELDVSRN 269
           N I ++        +NL+ LD+S N
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHN 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 9e-17
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGC 184
           +L  L L  N++  +  + F  L +L    L  N I  L    +    N+  L++ R+  
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-- 306

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                       SLP + +   ++ + LE L ++ N I  +  N   F  L  L+ L LS
Sbjct: 307 ---FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN--MFTGLINLKYLSLS 361

Query: 245 DNEIHRLPPEIQNFEN-----LVELDVSRNAPSNVDSSM 278
           ++         + F +     L  L++++N  S ++S  
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 16/155 (10%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKN---FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
                  +L+ELLL  N I+ L       F  + L+KL LS N+I    P        L 
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L ++       +        +             S+  L L  + +           + 
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANT-----------SIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 236 NRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
             L  L LS N ++ +  +       L    +  N
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 126 RSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI----QNFENLVELDVS 180
            SL++L L +N I++     F  + RL  L L++ ++     E         ++  L +S
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 181 RNG------------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
            +                 +  +D  + +L  V  D   +   LE   L+ N+I+ L  +
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 229 YLDFFRLNRLRKLGLSDN---------EIHRLPPE-IQNFENLVELDVSRNAPSNVDSSM 278
                 L  +R L L  +          + ++     Q  + L  L++  N    + S+M
Sbjct: 291 --SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 22/178 (12%)

Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFEN-----L 174
             ++ + LE L ++ N I  +  N F  L  L+ L LS++         + F +     L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 175 VELDVSRN----------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIR 223
             L++++N               +E +D     +   +     R   ++ E+ L  N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRL---PPEIQNFENLVELDVSRNAPSNVDSSM 278
            L +N   F  +  L++L L    +  +   P   Q   NL  LD+S N  +N++  M
Sbjct: 444 QLTRN--SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI 168
           W           L+    L  L L++N   ++P   F+ L  L+ + L  N ++ LP  +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 169 -QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY-FRSLEELLLDANHIR--- 223
             N  +L  L++ +N               + +V + V    FR+L EL +  N      
Sbjct: 580 FNNQVSLKSLNLQKN--------------LITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 267
           +    ++++          LS + +   PP    F  +   D S
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
           C    E  D  H  L  VP+D+     ++  L L  N +R LP    +F R ++L  L +
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDL---PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDV 56

Query: 244 SDNEIHRLPPE-IQNFENLVELDVSRN 269
             N I +L PE  Q    L  L++  N
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHN 83

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGC 184
            S+E L    N+I  +  +  +    + + L++N+I  L   +      +  LD+  N  
Sbjct: 99  PSIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-- 154

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
             +++ V+           ++     +LE L L  N I D+    +      +L+ L LS
Sbjct: 155 --EIDTVN---------FAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLS 199

Query: 245 DNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
            N++  + PE Q+   +  + +  N    ++ ++ + +
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 6e-20
 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
             + +   +++EL L  N +  +         +L  L LS N ++     +++   L  L
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTL 85

Query: 178 DVSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
           D++ N          +E +   + ++  V        +  + + L  N I  L     D 
Sbjct: 86  DLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL--DE 140

Query: 233 FRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRN 269
              +R++ L L  NEI  +       + + L  L++  N
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
            L   S   L  F  LE L L +N + +   +   L+ LR L L++N +  L        
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GP 99

Query: 173 NLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
           ++  L  + N          +  + +   +  +  + +        ++ L L  N I  +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
               L     + L  L L  N I+ +  ++  F  L  LD+S N  + +        
Sbjct: 160 NFAEL-AASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 27/153 (17%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVE 176
            ++ +     +   +  + ++    +  +    +++L LS N + ++    +  F  L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
           L++S N               L    +  L    +L  L L+ N++++L           
Sbjct: 63  LNLSSN--------------VLYETLD--LESLSTLRTLDLNNNYVQELL-------VGP 99

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            +  L  ++N I R+       +    + ++ N
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSR 181
            +  + + L  N I  L        +R++ L L  NEI  +       + + L  L++  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 182 NG--------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N            +++ +D     L  +  +  +    +  + L  N +  + K      
Sbjct: 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK---ALR 234

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274
               L    L  N  H         +N     V++     +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 26/142 (18%)

Query: 138 IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNRQVEYVDKRHC 196
           I ++ +N    NR +   ++D+ + +    + Q+  N+ ELD+S N              
Sbjct: 2   IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-------------- 44

Query: 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQ 256
            L  +    L  F  LE L L +N + +      D   L+ LR L L++N +  L     
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELLV--- 97

Query: 257 NFENLVELDVSRNAPSNVDSSM 278
              ++  L  + N  S V  S 
Sbjct: 98  -GPSIETLHAANNNISRVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
            +   ++     +LE L L  N I D+        +L+ L LS N++  + PE Q+   +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
             + +  N               L  + +  LR+ ++LE   L  N         L  F 
Sbjct: 217 TWISLRNN--------------KLVLIEKA-LRFSQNLEHFDLRGNGFHCGT---LRDFF 258

Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
               R   ++   + +L  + +    +  L     
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN--- 182
             L+ L L +N +  +   F     +  + L +N++  +   ++  +NL   D+  N   
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 183 --------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
                     N++V+ V K+  ++  +                 A    DLP  + D   
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD--- 305

Query: 235 LNRLRKLG 242
             RL  LG
Sbjct: 306 --RLIALG 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 6e-20
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
                +  ++L  L+L  N I  +    F  L +L +L LS N++  LP ++   + L E
Sbjct: 68  KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQE 125

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
           L V  N               +  V + V      +  + L  N ++        F  + 
Sbjct: 126 LRVHEN--------------EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           +L  + ++D  I  +P  +    +L EL +  N
Sbjct: 172 KLSYIRIADTNITTIPQGL--PPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 7e-20
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 118 SKDVLRYFRSLEELLLDANHIRD--LPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENL 174
            K V      +  + L  N ++   +    F+ + +L  + ++D  I  +P  +    +L
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSL 194

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
            EL +  N               +  V    L+   +L +L L  N I  +         
Sbjct: 195 TELHLDGN--------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNG--SLAN 238

Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
              LR+L L++N++ ++P  + + + +  + +  N  S + S+
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 5e-18
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 24/154 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             SL EL LD N I  +       LN L KLGLS N I  +      N  +L EL ++ N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN----YLDFFRLNRL 238
                          L  VP   L   + ++ + L  N+I  +  N         +    
Sbjct: 251 --------------KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 239 RKLGLSDNEI--HRLPPEI-QNFENLVELDVSRN 269
             + L  N +    + P   +       + +   
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 24/150 (16%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
                 L L  N I ++    F  L  L  L L +N+I ++ P        L  L +S+N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L  +PE +    ++L+EL +  N I  + K+   F  LN++  + 
Sbjct: 111 --------------QLKELPEKM---PKTLQELRVHENEITKVRKS--VFNGLNQMIVVE 151

Query: 243 LSDNEIH--RLPPEI-QNFENLVELDVSRN 269
           L  N +    +     Q  + L  + ++  
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 20/137 (14%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNF 171
           K+       L+   +L +L L  N I  +          LR+L L++N++ ++P  + + 
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262

Query: 172 ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR--DLPKNY 229
           + +  + +  N     +  +          P        S   + L +N ++  ++  + 
Sbjct: 263 KYIQVVYLHNN----NISAIGSNDFC----PPGYNTKKASYSGVSLFSNPVQYWEIQPS- 313

Query: 230 LDFFRLNRLRKLGLSDN 246
             F  +     + L + 
Sbjct: 314 -TFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 20/119 (16%)

Query: 151 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
           LR +  SD  + ++P ++    +   LD+  N               +  + +   +  +
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNN--------------KITEIKDGDFKNLK 76

Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           +L  L+L  N I  +      F  L +L +L LS N++  LP ++   + L EL V  N
Sbjct: 77  NLHTLILINNKISKISPG--AFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHEN 131

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 6e-20
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
             S + + L  N ++ L    F   + L+ L LS  EI  +  +      +L  L ++ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          + +          SLE L+     +  L        +L  L+KL 
Sbjct: 91  --------------PIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLN 134

Query: 243 LSDNEIHR--LPPEIQNFENLVELDVSRN 269
           ++ N IH   LP    N  NLV +D+S N
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 5e-19
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELD 178
                 L+ L    + ++ + +   F  L +L  L +S          I     +L  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 179 VSRN-----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
           ++ N                + ++D   C L  +   V      L+ L +  N++  L  
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           ++  + +L  L  L  S N I      +    ++L   +++ N
Sbjct: 515 SH--YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
            SL  L L  N    +  NF  L  L+ L    + + R+       + E L+ LD+S   
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT- 434

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
                        +     + +     SL  L +  N  +D   + + F     L  L L
Sbjct: 435 -------------NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDL 480

Query: 244 SDNEIHRLPPEI-QNFENLVELDVSRN 269
           S  ++ ++   +      L  L++S N
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHN 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
                  F  L+ L L    I  +    +  L+ L  L L+ N I    P       +L 
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L                    L ++    +    +L++L +  N I         F  L
Sbjct: 108 NLVAVET--------------KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNL 152

Query: 236 NRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVSRN 269
             L  + LS N I  +         +N +  + LD+S N
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 13/168 (7%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPEI 168
             L+++   ++     +        +  D       F  L  +  + L+   I  L    
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 169 QNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH 221
           ++F     L + R             ++ +           +       SL  L L  N 
Sbjct: 305 KHF-KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNA 361

Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           +             N LR L LS N    +       E L  LD   +
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 26/165 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHR--LPPEIQNFENL 174
           S        SLE L+     +  L       L  L+KL ++ N IH   LP    N  NL
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR----SLEELLLDANHIRDLPKNYL 230
           V +D+S N               +  +  + L++ R        L +  N I  +     
Sbjct: 156 VHVDLSYN--------------YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ-- 199

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNAPSN 273
             F+  +L +L L  N       +  +QN   L    +      +
Sbjct: 200 -AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 131 LLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVE 189
                  +  +P +       + + LS N +  L      NF  L  LD+SR        
Sbjct: 16  YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC------- 66

Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249
                   +  + +        L  L+L  N I+        F  L  L  L   + ++ 
Sbjct: 67  -------EIETIEDKAWHGLHHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLA 117

Query: 250 RLPPE-IQNFENLVELDVSRNAPSNVDSS 277
            L    I     L +L+V+ N   +    
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 19/140 (13%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRD-LPKNFFR-LNRLRKLGLSDNEIHRLPPEI-Q 169
             K+    +     SL  L +  N  +D    N F     L  L LS  ++ ++   +  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
               L  L++S N              +L  +         SL  L    N I       
Sbjct: 495 TLHRLQLLNMSHN--------------NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 230 LDFFRLNRLRKLGLSDNEIH 249
             F     L    L++N + 
Sbjct: 541 QHF--PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
           +    L +  N I  +    F+  +L +L L  N       +    +NL  L V R    
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC-LQNLAGLHVHRLILG 239

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                  K   +L      ++     +        +  D   + + F  L  +  + L+ 
Sbjct: 240 E-----FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 246 NEIHRLPPEIQNFENLVELDVSRN 269
             I  L    ++F     L + R 
Sbjct: 295 VSIKYLEDVPKHF-KWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 13/164 (7%)

Query: 126 RSLEELLLDANHIRDLPKNFFRL-----NRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
            +L  + L  N+I+ +  N  +           L +S N I  +  +      L EL + 
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
            N  +  +        +L       L   R +     D  ++     + ++      + +
Sbjct: 213 GNFNSSNIM--KTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 241 LGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKL 283
             L+                N+  + ++  +   ++    + K 
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 8e-20
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 16/157 (10%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI--QNFENLVELDVSRNGC 184
           SL+ L L  N +  +  NF  L +L  L    + + ++       +  NL+ LD+S    
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 185 N----------RQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
                        +E +     S   N   D+    R+L  L L    +  L      F 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFN 491

Query: 234 RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            L+ L+ L ++ N++  +P  I     +L ++ +  N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
             S + L L  N +R L    FF    L+ L LS  EI  +     Q+  +L  L ++ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          + ++         SL++L+    ++  L    +    L  L++L 
Sbjct: 87  --------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELN 130

Query: 243 LSDNEIHRL--PPEIQNFENLVELDVSRN 269
           ++ N I     P    N  NL  LD+S N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
                  F  L+ L L    I+ +    ++ L+ L  L L+ N I  L         +L 
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
           +L                   +L ++    + + ++L+EL +  N I+        F  L
Sbjct: 104 KLVAVET--------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNL 148

Query: 236 NRLRKLGLSDNEIHRLPPE-IQNFENL----VELDVSRN 269
             L  L LS N+I  +    ++    +    + LD+S N
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 25/172 (14%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRL--PPEIQ 169
            ++  +        SL++L+    ++  L       L  L++L ++ N I     P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLE----ELLLDANHIRDL 225
           N  NL  LD+S N               + ++    LR    +      L L  N +  +
Sbjct: 147 NLTNLEHLDLSSN--------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
                  F+  RL KL L +N       +    + L  L+V R       + 
Sbjct: 193 QPG---AFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNE 240

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 16/137 (11%)

Query: 127 SLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN- 182
            LE L    ++++ + +   F  L  L  L +S          I     +L  L ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 183 ----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
                        R + ++D   C L  +         SL+ L + +N ++ +P    D 
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD- 515

Query: 233 FRLNRLRKLGLSDNEIH 249
            RL  L+K+ L  N   
Sbjct: 516 -RLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 14/169 (8%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN----FFRLNRLRKLGLSDNEIHRLPPE 167
             L+ + K  L    +L        ++     +    F  L  +    L    I R+   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 168 IQNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
                    L++             + ++ +        N   +V     SLE L L  N
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRN 357

Query: 221 HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            +          F    L+ L LS N +  +       E L  LD   +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 12/162 (7%)

Query: 113 KLKLYSKDVLRYFRSLE----ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
           K++      LR    +      L L  N +  +    F+  RL KL L +N       + 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK- 218

Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
              + L  L+V R           +   +L    +  L    +L        ++     +
Sbjct: 219 TCIQGLAGLEVHRLVLGE-----FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 229 YLDFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            +D F  L  +    L    I R+            L++   
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNC 314

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 25/196 (12%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDL--PKNFFRLNRLRKLGLSDNEIHRLPPE-IQ 169
            L       + + ++L+EL +  N I+    P+ F  L  L  L LS N+I  +    ++
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 170 NFENL----VELDVSRN---------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEEL 215
               +    + LD+S N             ++  +  R+     NV +  ++    LE  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 216 LLDANHIRDLPK-NYLDFFRLNRLRKLGLSDNEIHRLPPEI-------QNFENLVELDVS 267
            L     R+       D   L  L  L + +  +  L   +           N+    + 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 268 RNAPSNVDSSMVYLKL 283
                 V         
Sbjct: 291 SVTIERVKDFSYNFGW 306

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)

Query: 119 KDVLRYFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
             +     SLE L +  N  ++  LP  F  L  L  L LS  ++ +L P    +  +L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
            L+++ N               L +VP+ +     SL+++ L  N  
Sbjct: 498 VLNMASN--------------QLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
             D+    R+L  L L    +  L    F  L+ L+ L ++ N++  +P  I     +L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 176 ELDVSRN 182
           ++ +  N
Sbjct: 522 KIWLHTN 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 27/170 (15%)

Query: 126 RSLEELLLDANHIRD----------LPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFEN 173
             L+ L +  N              L  +     +++   +  N +   P    +Q    
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 174 LVELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
           L  LD   N        G N ++  +   +  +  +PED   +   +E L    N ++ +
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEI------QNFENLVELDVSRN 269
           P N  +   +  +  +  S N+I      I          N   + +S N
Sbjct: 635 P-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 29/166 (17%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFF--RLNRLRKLGLSDNEIHRLPPEI------QN 170
           +D   +   +E L    N ++ +P  F    +  +  +  S N+I      I        
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
             N   + +S N               +   P ++      +  ++L  N +  +P+N L
Sbjct: 672 GINASTVTLSYN--------------EIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 231 -----DFFRLNRLRKLGLSDNEIHRLPPEIQ--NFENLVELDVSRN 269
                ++     L  + L  N++  L  + +      L  +DVS N
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 5e-16
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKN--------FFRLNRLRKLGLSDNEIHRLPPEIQ- 169
            ++      +  ++L  N +  +P+N        +     L  + L  N++  L  + + 
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 170 -NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI-RDLPK 227
                L  +DVS N           +  +        L+ F    +   + N I R  P 
Sbjct: 750 TTLPYLSNMDVSYN----CFSSFPTQPLNSSQ-----LKAFGIRHQRDAEGNRILRQWPT 800

Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
                     L +L +  N+I ++  ++     L  LD++ N
Sbjct: 801 G---ITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 19/174 (10%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
            K+ L     L     L++ +     ++ + K+     +  ++G   N I  +   IQ  
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 172 ENLVELDVSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDL 225
             L  +  + +           E  +  +       E      + L ++ L +  ++  L
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIH----------RLPPEIQNFENLVELDVSRN 269
           P      + L  L+ L ++ N             RL  +      +    +  N
Sbjct: 508 PD---FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 15/137 (10%)

Query: 148 LNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN-----------GCNRQVEYVDKRH 195
             R+  L L+      R+P  I     L  L    +                    +++H
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPK---NYLDFFRLNRLRKLGLSDNEIHRLP 252
               +  +  L Y + L    L  + I   P+      D     +  ++G   N I  + 
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441

Query: 253 PEIQNFENLVELDVSRN 269
             IQ    L  +  + +
Sbjct: 442 KAIQRLTKLQIIYFANS 458

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 24/133 (18%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI-------HRLPPEIQNFENLVEL 177
              L  + +  N     P      ++L+  G+             + P  I    +L++L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
            +  N               +  V E +      L  L +  N    +    +  +    
Sbjct: 812 QIGSN--------------DIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAG 854

Query: 238 LRKLGLSDNEIHR 250
           +  L     +  R
Sbjct: 855 MYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 18/181 (9%), Positives = 53/181 (29%), Gaps = 41/181 (22%)

Query: 127 SLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ----------NFENLV 175
            +  L L     +  +P    +L  L+ L    +                      ++ +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 176 ELDVSRN--GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL--- 230
            +   +     ++++   D    ++   PE  ++  +    + L    I +L  N +   
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNL-TNRITFI 440

Query: 231 --DFFRLNRLRKLGLSDNEIHRLPPE--------------------IQNFENLVELDVSR 268
                RL +L+ +  +++                              N ++L ++++  
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 269 N 269
            
Sbjct: 501 C 501

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.7 bits (217), Expect = 1e-19
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 20/162 (12%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVE 176
             +L  FR +E L L+   I ++    F   + ++KL +  N I  LPP + QN   L  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
           L + RN               L ++P  +      L  L +  N++  +  +   F    
Sbjct: 128 LVLERN--------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATT 171

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
            L+ L LS N +  +        +L   +VS N  S +   +
Sbjct: 172 SLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPI 211

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.7 bits (212), Expect = 5e-19
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 17/164 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L    SL    +  N +  L         + +L  S N I+ +   +     L  L +  
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQH 241

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N             +  VD  +  L  +        + LE L +  N +  L        
Sbjct: 242 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL---YGQ 298

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
            +  L+ L LS N +  +      F+ L  L +  N+   +  S
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 1e-18
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 124 YFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSR 181
              + + +    + +R LP        ++  L L+D +I  +          + +L +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N              ++  +P  V +    L  L+L+ N +  LP+    F    +L  L
Sbjct: 109 N--------------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTL 152

Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSS 277
            +S+N + R+  +  Q   +L  L +S N  ++VD S
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.2 bits (195), Expect = 9e-17
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 17/172 (9%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
             D  +   SL+ L L +N +  +  +      L    +S N +  L   I     + EL
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP--SLFHANVSYNLLSTLAIPI----AVEEL 216

Query: 178 DVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
           D S N         N ++  +  +H +L +     L  +  L E+ L  N +  +  +  
Sbjct: 217 DASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYH-- 272

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
            F ++ RL +L +S+N +  L    Q    L  LD+S N   +V+ +     
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 21/136 (15%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFEN 173
            L     L  +  L E+ L  N +  +  + F  + RL +L +S+N +  L    Q    
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L  LD+S N               L +V  +  + F  LE L LD N I  L  +     
Sbjct: 303 LKVLDLSHN--------------HLLHVERNQPQ-FDRLENLYLDHNSIVTLKLST---- 343

Query: 234 RLNRLRKLGLSDNEIH 249
             + L+ L LS N+  
Sbjct: 344 -HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 21/140 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
                   + LE L +  N +  L      +  L+ L LS N +  +      F+ L  L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
            +  N              S+  +         +L+ L L  N         L       
Sbjct: 330 YLDHN--------------SIVTLKLST---HHTLKNLTLSHNDWDCNSLRAL----FRN 368

Query: 238 LRKLGLSDNEIHRLPPEIQN 257
           + +  + D + H        
Sbjct: 369 VARPAVDDADQHCKIDYQLE 388

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 141 LPKNFFRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP 199
           +  N         + +           E     N   +    +              ++ 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS--------------TMR 64

Query: 200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNF 258
            +P  +L  FR +E L L+   I ++      F   + ++KL +  N I  LPP + QN 
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122

Query: 259 ENLVELDVSRN 269
             L  L + RN
Sbjct: 123 PLLTVLVLERN 133

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
            SL+ L L  N +  +  NF  L +L  L    + + ++       +  NL+ LD+S   
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT- 136

Query: 184 CNRQVEYVDKRHCS---------------LPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
                        +                 N   D+    R+L  L L    +  L   
Sbjct: 137 ---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
              F  L+ L+ L +S N    L     +   +L  LD S N
Sbjct: 194 --AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELD 178
                 LE L    ++++ + +   F  L  L  L +S          I     +L  L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 179 VSRNGCNRQV-----------EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
           ++ N                  ++D   C L  +         SL+ L +  N+   L  
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEI--QNFENLVELDVSRN 269
               +  LN L+ L  S N I     +       +L  L++++N
Sbjct: 217 F--PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 4e-19
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 18/173 (10%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPEIQ 169
           KL+     V      L +L L +N +       ++ F    L+ L LS N +  +     
Sbjct: 39  KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98

Query: 170 NFENLVELDVSRNGCNR-----------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
             E L  LD   +   +            + Y+D  H         +     SLE L + 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 219 AN-HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            N    +   +   F  L  L  L LS  ++ +L P    +  +L  L++S N
Sbjct: 159 GNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
           S  E+  ++  +  +P          +L L  N++  LP  +      L +L +S N   
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN--- 62

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                      S             SL+ L L  N +  +     +F  L +L  L    
Sbjct: 63  ---------GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQH 110

Query: 246 NEIHRLPPE--IQNFENLVELDVSRN 269
           + + ++       +  NL+ LD+S  
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNF 171
            + +  D+    R+L  L L    +  L    F  L+ L+ L +S N    L     +  
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 172 ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYF-RSLEELLLDANHIR 223
            +L  LD S N               +    +  L++F  SL  L L  N   
Sbjct: 223 NSLQVLDYSLN--------------HIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
            C+     +      L +VP  +     S   L L++N ++ LP     F +L +L KL 
Sbjct: 4   RCSCSGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHG--VFDKLTQLTKLS 58

Query: 243 LSDNEIHRLPPEIQNFE---NLVELDVSRNAPSNVDSSMVYL 281
           LS N +       Q+     +L  LD+S N    + S+ + L
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 25/154 (16%)

Query: 126 RSLEELLLDANHIRDL--PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
             ++ + +  N+++      +  ++ +L  L    N++    P   +   L  L+++ N 
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN- 363

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
                         +  +P +   +   +E L    N ++ +P    D   ++ +  +  
Sbjct: 364 -------------QITEIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDF 409

Query: 244 SDNEI--------HRLPPEIQNFENLVELDVSRN 269
           S NEI          L P      N+  +++S N
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 126 RSLEELLLDANHIRDLPKNFF--RLNRLRKLGLSDNE--------IHRLPPEIQNFENLV 175
             +E L    N ++ +P  F    ++ +  +  S NE           L P      N+ 
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 176 ELDVSRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYF-------RSLEELLLD 218
            +++S N               +  ++     L  +P++ L+           L  + L 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            N +  L  +      L  L  + LS N   + P +  N   L    +   
Sbjct: 497 FNKLTKLSDD-FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 126 RSLEELLLDANHIRDLPKN--------FFRLNRLRKLGLSDNEIHRLPPEIQ--NFENLV 175
             L  + L  N + ++PKN        F     L  + L  N++ +L  + +      LV
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI-RDLPKNYLDFFR 234
            +D+S N           +  +        L+ F    +     N   R+ P+       
Sbjct: 517 GIDLSYN----SFSKFPTQPLNSST-----LKGFGIRNQRDAQGNRTLREWPEG---ITL 564

Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
              L +L +  N+I ++  +I    N+  LD+  N
Sbjct: 565 CPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 8e-14
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 23/166 (13%)

Query: 126 RSLEELLLDANHIRDLPKNFF--RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN- 182
             L  + L  N +  L  +F    L  L  + LS N   + P +  N   L    +    
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 183 --GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
               NR +          P    + +    SL +L + +N IR + +          +  
Sbjct: 548 DAQGNRTLR-------EWP----EGITLCPSLTQLQIGSNDIRKVNEK-----ITPNISV 591

Query: 241 LGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285
           L + DN    +    +  +       +  +   ++      L + R
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD-ALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 20/171 (11%), Positives = 51/171 (29%), Gaps = 42/171 (24%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI--------------------HRLPP 166
              ++   +N+I  + K   RL +LR+  + ++                           
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 167 EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
           +  N ++L +++V                  LP      L+    ++ + +  N      
Sbjct: 244 KWDNLKDLTDVEVYNC----------PNLTKLP----TFLKALPEMQLINVACNRGISGE 289

Query: 227 KNYLD------FFRLNRLRKLGLSDNEIHRL--PPEIQNFENLVELDVSRN 269
           +   D           +++ + +  N +        +Q  + L  L+   N
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 15/161 (9%), Positives = 50/161 (31%), Gaps = 19/161 (11%)

Query: 125 FRSLEELLLDANH-IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN- 182
           F  L +  ++++   + + K+     +  ++G   N I  +   +     L +  +  + 
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFFRLNR 237
                     E  +  +       +      + L ++ + +  ++  LP        L  
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT---FLKALPE 274

Query: 238 LRKLGLSDNEIHRLP---------PEIQNFENLVELDVSRN 269
           ++ + ++ N                +    E +  + +  N
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 19/140 (13%)

Query: 147 RLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN--------------GCNRQVEYV 191
              R+  L L       R+P  I     L  L +  +                N   E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 192 DKRHCSLPN--VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249
            K         V  D    F  L +  ++++  +   K         +  ++G   N I 
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK--SSRITLKDTQIGQLSNNIT 196

Query: 250 RLPPEIQNFENLVELDVSRN 269
            +   +     L +  +  +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNS 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 17/106 (16%)

Query: 122 LRYFRSLEELLLDANHI-RDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
           L+ F    +     N   R+ P+       L +L +  N+I ++  +I    N+  LD+ 
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIK 595

Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
            N                 ++    +  +      +L  +  +D+ 
Sbjct: 596 DN--------------PNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.4 bits (214), Expect = 3e-19
 Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 20/157 (12%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN 185
           S+E L    N+I  +  +  +    + + L++N+I  L   +      +  LD+  N   
Sbjct: 100 SIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--- 154

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
            +++ V+           ++     +LE L L  N I D+    +      +L+ L LS 
Sbjct: 155 -EIDTVN---------FAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSS 200

Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           N++  + PE Q+   +  + +  N    ++ ++ + +
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
            + +   +++EL L  N +  +         +L  L LS N ++     +++   L  LD
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLD 86

Query: 179 VSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           ++ N          +E +   + ++  V        +  + + L  N I  L     D  
Sbjct: 87  LNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL--DEG 141

Query: 234 RLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRN 269
             +R++ L L  NEI  +       + + L  L++  N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.3 bits (211), Expect = 6e-19
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSR 181
            +  + + L  N I  L        +R++ L L  NEI  +       + + L  L++  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N               + +V   V+  F  L+ L L +N +  +      F     +  +
Sbjct: 179 N--------------FIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE---FQSAAGVTWI 219

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L +N++  +   ++  +NL   D+  N
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGN 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN--- 182
             L+ L L +N +  +   F     +  + L +N++  +   ++  +NL   D+  N   
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 183 --------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD--- 231
                     N++V+ V K+  ++  +                 A    DLP  + D   
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 232 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
             +      L    +E  RL  E +N     E+D  +  
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 9e-17
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
            L   S   L  F  LE L L +N + +   +   L+ LR L L++N +  L        
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GP 99

Query: 173 NLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
           ++  L  + N          +  + +   +  +  + +        ++ L L  N I  +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
               L     + L  L L  N I+ +  ++  F  L  LD+S N  + +        
Sbjct: 160 NFAEL-AASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVE 176
            ++ +     +   +  + ++    +  +    +++L LS N + ++    +  F  L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 177 LDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
           L++S N             +  +D  +  +  +         S+E L    N+I  +  +
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS 117

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRN 269
                R    + + L++N+I  L   +      +  LD+  N
Sbjct: 118 -----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 26/142 (18%)

Query: 138 IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNRQVEYVDKRHC 196
           I ++ +N    NR +   ++D+ + +    + Q+  N+ ELD+S N              
Sbjct: 2   IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-------------- 44

Query: 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQ 256
            L  +    L  F  LE L L +N + +      D   L+ LR L L++N +  L     
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELLV--- 97

Query: 257 NFENLVELDVSRNAPSNVDSSM 278
              ++  L  + N  S V  S 
Sbjct: 98  -GPSIETLHAANNNISRVSCSR 118

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
            +   ++     +LE L L  N I D+        +L+ L LS N++  + PE Q+   +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
             + +  N               L  + +  LR+ ++LE   L  N         L  F 
Sbjct: 217 TWISLRNN--------------KLVLIEKA-LRFSQNLEHFDLRGNGFHCGT---LRDFF 258

Query: 235 LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS 277
               R   ++   + +L  +  +                ++ + 
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 18/161 (11%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELD 178
             LR+ ++LE   L  N         F     R   ++   + +L  +  +         
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS--LEELLLDANHIRDLPKNYLDFFRLN 236
                C             LP    D L   +      L    +    L     +     
Sbjct: 291 YGAYCCE-----------DLPAPFADRLIALKRKEHALLSGQGSETERLEC---ERENQA 336

Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
           R R++     +   +  ++    +  + L+  + A     S
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 9/146 (6%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
               L    +    L        R R++     +   +  ++    +  + L+  +   +
Sbjct: 314 EHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

Query: 186 RQVEYVDKRHCSLPNVPEDVLRY--FRSLEELLLDANHIRDLPKNYLD------FFRLNR 237
            QV    + H  L    +  +     +   E       +R + K Y +        + N 
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433

Query: 238 LRKLGLSDNEIHRLPPEIQNFENLVE 263
           +R   +  ++  +L  E    + L  
Sbjct: 434 IRDWDMYQHKETQLAEENARLKKLNG 459

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 9e-19
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN---FFRLNRLRKLGLSDNEIHRLPPEI 168
            +  L +      + SL+ L+L  NH+R + K       L  L  L +S N  H +P   
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 169 QNFENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH 221
           Q  E +  L++S            + +E +D  + +L +           L+EL +  N 
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF----LPRLQELYISRNK 462

Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           ++ LP    D      L  + +S N++  +P  I     +L ++ +  N
Sbjct: 463 LKTLP----DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
           ++  L +   ++       +  L +++++ + ++++  +P    Q+ ++L  LD+S N  
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-- 344

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                                   + SL+ L+L  NH+R + K       L  L  L +S
Sbjct: 345 ---------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 245 DNEIHRLPPEIQNFENLVELDVSRN 269
            N  H +P   Q  E +  L++S  
Sbjct: 396 RNTFHPMPDSCQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             +++ L L  N I  +          L+ L L  + I+ +  +   +  +L  LD+S N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L ++         SL+ L L  N  + L    L F  L  L+ L 
Sbjct: 85  --------------HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLR 129

Query: 243 LSD-NEIHRLPPE-IQNFENLVELDVSRN 269
           + +      +         +L EL++   
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 19/155 (12%)

Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP--EIQNFENLV 175
            D      SLE L L  NH+  L  ++F  L+ L+ L L  N    L       N  NL 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            L +                 +   +         SL EL + A  +R+          +
Sbjct: 127 TLRIGNV-------------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSI 171

Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
             +  L L  +E   L         ++  L++   
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 22/175 (12%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE---- 167
            L      V      ++ + ++ + +  +P +F + L  L  L LS+N +     +    
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
              + +L  L +S+N              S+     ++L   ++L  L +  N    +P 
Sbjct: 357 KGAWPSLQTLVLSQNHLR-----------SMQKTG-EILLTLKNLTSLDISRNTFHPMPD 404

Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           +        ++R L LS   I  +   I   + L  LDVS N   +    +  L+
Sbjct: 405 S---CQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQ 454

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 31/187 (16%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QN 170
                 +       SL EL + A  +R+      + +  +  L L  +E   L       
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 171 FENLVELDVSRNG---------------------CNRQVEYVDKRHCSLPNVPEDVLRYF 209
             ++  L++                           R     D+    L  +   +L   
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL- 253

Query: 210 RSLEELLLDANHIRDLPKNYLDFF------RLNRLRKLGLSDNEIHRLPPEI-QNFENLV 262
             +E      N + D   +  D            +R+L +    +      +    E + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 263 ELDVSRN 269
            + V  +
Sbjct: 314 RITVENS 320

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN--FFRLNRLRKLGLSD-NEIHRLPPE-IQNFEN 173
           S        SL+ L L  N  + L     F  L  L+ L + +      +         +
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L EL++                 SL N     L+  R +  L L  +    L + + D  
Sbjct: 150 LNELEIKAL--------------SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-- 193

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENL 261
            L+ +R L L D  + R        + +
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEV 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
            ++LE L +  N++         L RL++L +S N++  LP     F  L+ + +SRN  
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPDAS-LFPVLLVMKISRN-- 483

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
                        L +VP+ +     SL+++ L  N  
Sbjct: 484 ------------QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFE 172
           +L ++       +L  LLL  NH+  +    F  +  LR L LS N +H L   +  + +
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112

Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN-YLD 231
            L  L +  N               +  V  +       L++L L  N I   P     D
Sbjct: 113 ALEVLLLYNN--------------HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 232 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
             +L +L  L LS N++ +LP      + L   
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTD--LQKLPAW 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 151 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
              L LS N + RL  E      L  L             +   H  L  +  +      
Sbjct: 41  TALLDLSHNNLSRLRAE-WTPTRLTNL-----------HSLLLSHNHLNFISSEAFVPVP 88

Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           +L  L L +NH+  L +    F  L  L  L L +N I  +     ++   L +L +S+N
Sbjct: 89  NLRYLDLSSNHLHTLDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 35/138 (25%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNF 171
            L    + +    ++LE LLL  NHI  + +N F  + +L+KL LS N+I R P E+   
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--I 156

Query: 172 ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD 231
           ++  +L                                  L  L L +N ++ LP   L 
Sbjct: 157 KDGNKL--------------------------------PKLMLLDLSSNKLKKLPLTDLQ 184

Query: 232 FFRLNRLRKLGLSDNEIH 249
                    L L +N + 
Sbjct: 185 KLPAWVKNGLYLHNNPLE 202

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 17/167 (10%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
           S   L+   +L+ L+L +N I  + ++ F  L  L  L LS N +  L     +   +L 
Sbjct: 68  SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 176 ELDVSRN------------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
            L++  N               +          +   +          LEEL +DA+ ++
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
                 L    +  +  L L   +   L         ++  L++   
Sbjct: 188 SYEPKSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 6e-18
 Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 12/160 (7%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QN 170
                 +        LEEL +DA+ ++         +  +  L L   +   L       
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
             ++  L++     +            L     + L    +   + +    +  + K   
Sbjct: 221 TSSVECLELRDTDLDT------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-- 272

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
              +++ L +L  S N++  +P  I     +L ++ +  N
Sbjct: 273 -LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             +++ L L  N I  +  +   R   L+ L L+ N I+ +  +   +  +L  LD+S N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          L N+     +   SL  L L  N  + L +  L F  L +L+ L 
Sbjct: 111 --------------YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILR 155

Query: 243 LSDNE-IHRLPPEI-QNFENLVELDVSRN 269
           + + +   ++  +       L EL++  +
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 116 LYSKDVLRYFRSLEELLLDANH-IRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFE 172
           L    +  +   L+ L +        + +  F  L  L +L +  +++    P+  ++ +
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD- 231
           N+  L +                     + E  +    S+E L L    +     + L  
Sbjct: 199 NVSHLILHMK--------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 232 -----FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
                  +    R + ++D  + ++   +     L+EL+ SRN
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 19/115 (16%)

Query: 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL 215
            S   ++ +P  +   E +  LD+S N               +  +    L+   +L+ L
Sbjct: 38  GSSGSLNSIPSGL--TEAVKSLDLSNN--------------RITYISNSDLQRCVNLQAL 81

Query: 216 LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           +L +N I  + ++   F  L  L  L LS N +  L     +   +L  L++  N
Sbjct: 82  VLTSNGINTIEED--SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 5e-18
 Identities = 49/167 (29%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
           T+ L L        S   L  +  L +L LD   +  L      L  L  L LS N++  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQS 91

Query: 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
           LP   Q    L  LDVS N               L ++P   LR    L+EL L  N ++
Sbjct: 92  LPLLGQTLPALTVLDVSFNR--------------LTSLPLGALRGLGELQELYLKGNELK 137

Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            LP   L      +L KL L++N +  LP  +    ENL  L +  N
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 6e-18
 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
            L  L L  N ++ LP     L  L  L +S N +  LP    +    L EL +  N   
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--- 134

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                       L  +P  +L     LE+L L  N++ +LP   L+   L  L  L L +
Sbjct: 135 -----------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQE 181

Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           N ++ +P        L    +  N P   +  ++Y +
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGN-PWLCNCEILYFR 217

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 7e-18
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 25/161 (15%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGC 184
             L+E L  ++++ ++P     +    +   + +E  R  PP       +    +     
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-L 69

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
           +RQ   ++  +  L ++PE        LE L+   N + +LP+       L  L     +
Sbjct: 70  DRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPEL---PQSLKSLLVDNNN 122

Query: 245 DNEIHRLP----------------PEIQNFENLVELDVSRN 269
              +  LP                PE+QN   L  +DV  N
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 33/179 (18%)

Query: 127 SLEELLLDANHIRDLPKNFFRL-----------------NRLRKLGLSDNEIHRLPPEIQ 169
            LE L+   N + +LP+    L                   L  LG+S+N++ +L PE+Q
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL-PELQ 150

Query: 170 NFENLVELDVSRN------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
           N   L  +DV  N           +E++   +  L  +PE  L+    L  +  D N ++
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK 208

Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
            LP           L  +   +N +  L PE+QN   L  +    N    +      L+
Sbjct: 209 KLPDL------PLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKTLPDLPPSLE 260

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 18/178 (10%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
           S  +L     L+    L+ + +D N ++ LP        L  +   +N++  LP E+QN 
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNL 194

Query: 172 ENLVELDVSRN------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
             L  +    N           +E +   +  L  +PE  L+    L  +  D N ++ L
Sbjct: 195 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL 252

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
           P           L  L + DN +  LP   Q+   L   +   +  S +  ++ YL  
Sbjct: 253 PDL------PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 20/165 (12%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
            LE L +  N +  LP      + L+ + + +N + +LP       +L  +    N    
Sbjct: 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE 187

Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
                    +  +   + SL  +P+       SLE ++   N + +LP    +   L  L
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP----ELQNLPFL 239

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
             +   +N +  LP    + E L   D        +  S+ +L +
Sbjct: 240 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 21/148 (14%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
           SLEEL +  N + +LP       RL +L  S N +  +P   QN   L +L V  N    
Sbjct: 318 SLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQN---LKQLHVEYN---- 367

Query: 187 QVEYVDKRHCSLP-----NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
            +        S+      +   +V    ++L++L ++ N +R+ P           +  L
Sbjct: 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI------PESVEDL 421

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
            ++   +           + +E DV  +
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 33/143 (23%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
           SLE L +  N++ DLP+    L  L       + +  LPP      NL  L+ S N    
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP------NLYYLNASSNEIR- 310

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
                     SL ++P        SLEEL +  N + +LP          RL +L  S N
Sbjct: 311 ----------SLCDLPP-------SLEELNVSNNKLIELPAL------PPRLERLIASFN 347

Query: 247 EIHRLPPEIQNFENLVELDVSRN 269
            +  +P   Q   NL +L V  N
Sbjct: 348 HLAEVPELPQ---NLKQLHVEYN 367

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 36/161 (22%), Positives = 54/161 (33%), Gaps = 46/161 (28%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
            +SL  L +  N    L +       L  L  S NEI  L        +L EL+VS N  
Sbjct: 276 PQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCDLPP---SLEELNVSNN-- 327

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                        L  +P         LE L+   NH+ ++P+          L++L + 
Sbjct: 328 ------------KLIELPAL----PPRLERLIASFNHLAEVPEL------PQNLKQLHVE 365

Query: 245 DNEIHRLPPEIQNFE----------------NLVELDVSRN 269
            N +   P   ++ E                NL +L V  N
Sbjct: 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)

Query: 127 SLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
              EL L+ N    L     F +L +LRK+  S+N+I  +     +    + E+ ++ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
                         L NV   + +   SL+ L+L +N I  +  +      L+ +R L L
Sbjct: 92  -------------RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSL 136

Query: 244 SDNEIHRLPPEIQNFENLVEL 264
            DN+I  + P    F+ L  L
Sbjct: 137 YDNQITTVAPGA--FDTLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNF 171
           +L+     + +   SL+ L+L +N I  +  + F  L+ +R L L DN+I  + P    F
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA--F 149

Query: 172 ENLVEL 177
           + L  L
Sbjct: 150 DTLHSL 155

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 24/164 (14%)

Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH 162
           T  L L               F  L+ L L    I+ +    +  L+ L  L L+ N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
            L      F  L  L           + +     +L ++    + + ++L+EL +  N I
Sbjct: 90  SLALGA--FSGLSSL-----------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 266
           +        F  L  L  L LS N+I  +         L ++ +
Sbjct: 137 QSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPL 177

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 127 SLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
           SL++L+    ++  L       L  L++L ++ N I       + F NL  L        
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNL-------- 151

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLE----ELLLDANHIRDLPKNYLDFFRLNRLRKL 241
              E++D     + ++    LR    +      L L  N +  +       F+  RL++L
Sbjct: 152 ---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLKEL 205

Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            L  N++  +P  I     +L ++ +  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 27/152 (17%)

Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
            L  L+L  N I+ L    F  L+ L+KL   +  +  L      + + L EL+V+ N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-- 134

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRS---LEELLLDANHIRDLPKNYLDFFRLNRLR-- 239
                        + +       YF +   LE L L +N I+ +     D   L+++   
Sbjct: 135 ------------LIQSFKLP--EYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL 178

Query: 240 --KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
              L LS N ++ + P       L EL +  N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 113 KLKLYSKDVLRYFRSLE----ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
           K++      LR    +      L L  N +  +    F+  RL++L L  N++  +P  I
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 169 -QNFENLVELDVSRN 182
                +L ++ +  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 3e-17
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
            ++   L  + I  L K+ F     L +L L+ NEI+++         +L++L++S+N  
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-- 333

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                        L ++   +      LE L L  NHIR L      F  L  L++L L 
Sbjct: 334 ------------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLPNLKELALD 379

Query: 245 DNEIHRLPPEI-QNFENLVELDVSRN 269
            N++  +P  I     +L ++ +  N
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 23/150 (15%)

Query: 127 SLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
            +  + L  N I +L   +F RL  L+ L +       +      +   +L+ L +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD--LPKNYLDFFRLNRLRKL 241
                            +         +LE L L   ++    L  N+     L  L  L
Sbjct: 90  -------------QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK--PLTSLEML 134

Query: 242 GLSDNEIHRLPPEI--QNFENLVELDVSRN 269
            L DN I ++ P     N      LD++ N
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 27/156 (17%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRD--LPKNFFR-LNRLRKLGLSDNEIHRLPPEI- 168
           +             +LE L L   ++    L  NFF+ L  L  L L DN I ++ P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 169 -QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS--LEELLLDANHIRDL 225
             N      LD++ N               + ++ E+ L  F+      L L +  ++D+
Sbjct: 150 FLNMRRFHVLDLTFN--------------KVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 226 PKNYLD------FFRLNRLRKLGLSDNEIHRLPPEI 255
            + +L        F+   +  L LS N       + 
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 32/165 (19%), Positives = 50/165 (30%), Gaps = 26/165 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH--RLPPEI-QNFEN 173
             +  R   SL  L LD N    L    F  L  L  L L+   +    L     +   +
Sbjct: 71  RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L  L +  N     ++ +          P       R    L L  N ++ + +  L  F
Sbjct: 131 LEMLVLRDN----NIKKIQ---------PASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 234 RLNRLRKLGLSDNEIHRLPP------EIQNFENLV---ELDVSRN 269
           +      L LS   +  +        +  N         LD+S N
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFR----LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
                 S+  L L  N  ++     F       +++ L LS++          NF++   
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
                   +  V+  D     +  + + V  +F  LE+L L  N I  +  N   F+ L 
Sbjct: 267 FTFKGLEAS-GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN--AFWGLT 323

Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            L KL LS N +  +   + +N + L  LD+S N
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
            K V  +F  LE+L L  N I  +  N F+ L  L KL LS N +  +   + +N + L 
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            LD+S N               +  + +       +L+EL LD N ++ +P    D  RL
Sbjct: 351 VLDLSYN--------------HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD--RL 394

Query: 236 NRLRKLGLSDN 246
             L+K+ L  N
Sbjct: 395 TSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 14/157 (8%)

Query: 126 RSLEELLLDANHIRDLPKNFF---RLNRLRKLGLSDNEIHRLPP------EIQNFENLV- 175
           R    L L  N ++ + +      +      L LS   +  +        +  N      
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 176 --ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
              LD+S NG    +        +   +   +L              + +D         
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS-YNMGSSFGHTNFKDPDNFTFKGL 272

Query: 234 RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
             + ++   LS ++I  L   +  +F +L +L +++N
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 24/141 (17%)

Query: 151 LRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYF 209
           +  + LS N I  L        ++L  L V +                   +  +  R  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-------------VIRNNTFRGL 78

Query: 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEI-QNFENLVELDV 266
            SL  L LD N    L     +   L  L  L L+   +    L     +   +L  L +
Sbjct: 79  SSLIILKLDYNQFLQLETGAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 267 SRN-----APSNVDSSMVYLK 282
             N      P++   +M    
Sbjct: 137 RDNNIKKIQPASFFLNMRRFH 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
           ++ E+ L+ N I+ +P   F    +LR++ LS+N+I  L P+  Q   +L  L +  N  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-- 90

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                        +  +P+ +     SL+ LLL+AN I  L  +      L+ L  L L 
Sbjct: 91  ------------KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLY 136

Query: 245 DNEIHRLPPEIQNFENLVEL 264
           DN++  +      F  L  +
Sbjct: 137 DNKLQTIAKGT--FSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 14/96 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
           RSL  L+L  N I +LPK+ F  L  L+ L L+ N+I+ L  +   F++L  L++     
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA--FQDLHNLNLLSLYD 137

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
           N+           L  + +      R+++ + L  N
Sbjct: 138 NK-----------LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNF 171
           K+    K +     SL+ LLL+AN I  L  + F  L+ L  L L DN++  +      F
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--F 148

Query: 172 ENLVEL 177
             L  +
Sbjct: 149 SPLRAI 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 9e-17
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
             S + L L  N +R L    FF    L+ L LS  EI  +     Q+  +L  L ++ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                          + ++         SL++L+    ++  L         L  L++L 
Sbjct: 87  --------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELN 130

Query: 243 LSDNEIHRL--PPEIQNFENLVELDVSRN 269
           ++ N I     P    N  NL  LD+S N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 18/147 (12%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
            SL+ L L  N +  +  NF  L +L  L    + + ++       +  NL+ LD+S   
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT- 431

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
                                +     SLE L +  N  ++     + F  L  L  L L
Sbjct: 432 -------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDL 477

Query: 244 SDNEIHRLPPE-IQNFENLVELDVSRN 269
           S  ++ +L P    +  +L  L++S N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 18/159 (11%)

Query: 127 SLEELLLDANHIRDL-PKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN- 182
            LE L    ++++ +   + F  L  L  L +S                +L  L ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 183 ----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
                        R + ++D   C L  +         SL+ L +  N+   L      +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--Y 514

Query: 233 FRLNRLRKLGLSDNEIHRLPPEI--QNFENLVELDVSRN 269
             LN L+ L  S N I     +       +L  L++++N
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVEL 177
                F  L+ L L    I+ +    ++ L+ L  L L+ N I  L         +L +L
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
                              +L ++    + + ++L+EL +  N I+        F  L  
Sbjct: 106 VAVET--------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTN 150

Query: 238 LRKLGLSDNEIHRLPPE-IQNFENL----VELDVSRN 269
           L  L LS N+I  +    ++    +    + LD+S N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 19/150 (12%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
           D+     ++    L +  I  +  +F      + L L + +  + P      ++L  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF 332

Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
           + N                 N          SLE L L  N +          F    L+
Sbjct: 333 TSN--------------KGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 240 KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L LS N +  +       E L  LD   +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 26/165 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRL--PPEIQNFENL 174
           +        SL++L+    ++  L       L  L++L ++ N I     P    N  NL
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLE----ELLLDANHIRDLPKNYL 230
             LD+S N               + ++    LR    +      L L  N +  +     
Sbjct: 152 EHLDLSSN--------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-- 195

Query: 231 DFFRLNRLRKLGLSDNEI--HRLPPEIQNFENLVELDVSRNAPSN 273
             F+  RL KL L +N    + +   IQ    L    +      N
Sbjct: 196 -AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 25/175 (14%)

Query: 120 DVLRYFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENL-- 174
             + + ++L+EL +  N I+   LP+ F  L  L  L LS N+I  +    ++    +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 175 --VELDVSRN---------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHI 222
             + LD+S N             ++  +  R+     NV +  ++    LE   L     
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 223 RDLPKNY-LDFFRLNRLRKLGLSDNEIHRL-------PPEIQNFENLVELDVSRN 269
           R+       D   L  L  L + +  +  L               N+    +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 27/173 (15%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI--HRLPPEIQNFENLVELDVSRNG- 183
               L L  N +  +    F+  RL KL L +N    + +   IQ    L    +     
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 184 -----------------CNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIRDL 225
                            CN  +E     +     +   D+     ++    L +  I  +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
                DF      + L L + +  + P      ++L  L  + N   N  S +
Sbjct: 298 K----DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 27/178 (15%), Positives = 47/178 (26%), Gaps = 29/178 (16%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIR----DLPKNFFRLNRLRKLGLSDNEIHRLPPE 167
             L+ + K  L    +L        ++     D+   F  L  +    L    I R+   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
                    L++                      P   L+  + L        +      
Sbjct: 300 FSYNFGWQHLELVNC--------------KFGQFPTLKLKSLKRLTFTSNKGGNA----- 340

Query: 228 NYLDFFRLNRLRKLGLSDNEIHRL---PPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
                  L  L  L LS N +              +L  LD+S N    + S+ + L+
Sbjct: 341 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI--QNFENL 174
           S        SL+ L +  N+   L    ++ LN L+ L  S N I     +       +L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
             L++++N             C+  +  +  L++ +   +LL++   + 
Sbjct: 546 AFLNLTQN----------DFACTCEH--QSFLQWIKDQRQLLVEVERME 582

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.2 bits (195), Expect = 9e-17
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 19/148 (12%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
              +  L++  N++  LP        LR L +S N++  LP        L          
Sbjct: 60  PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116

Query: 183 -GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
                 +  +      L ++P         L+EL +  N +  LP         + L KL
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPAL------PSELCKL 166

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
              +N++  LP        L EL VS N
Sbjct: 167 WAYNNQLTSLPMLP---SGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 6e-16
 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 30/143 (20%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
            L+EL +  N +  LP      + L KL   +N +  LP        L EL VS N    
Sbjct: 182 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGN---- 231

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
                  R  SLP +P         L+EL++  N +  LP         + L  L +  N
Sbjct: 232 -------RLTSLPVLPS-------ELKELMVSGNRLTSLPML------PSGLLSLSVYRN 271

Query: 247 EIHRLPPEIQNFENLVELDVSRN 269
           ++ RLP  + +  +   +++  N
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 6e-15
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 30/153 (19%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN--- 182
                L +  + +  LP        +  L + DN +  LP        L  L+VS N   
Sbjct: 40  NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP---PELRTLEVSGNQLT 94

Query: 183 ------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
                     ++         LP +P         L +L +  N +  LP          
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPVL------PP 141

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L++L +SDN++  LP        L +L    N
Sbjct: 142 GLQELSVSDNQLASLPALP---SELCKLWAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 22/147 (14%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
              L  L +  N +  LP     L  L         +  LP        L +L +  N  
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133

Query: 185 NR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
                    ++ +      L ++P         L +L    N +  LP         + L
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLPML------PSGL 183

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELD 265
           ++L +SDN++  LP        L   +
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYN 210

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 28/169 (16%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
            +      L        H+  LP        L KL +  N++  LP        L EL V
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTSLPVLP---PGLQELSV 148

Query: 180 SRNGCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           S N          ++  +   +  L ++P         L+EL +  N +  LP       
Sbjct: 149 SDNQLASLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVSDNQLASLPTL----- 199

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
             + L KL   +N +  LP        L EL VS N  +++      LK
Sbjct: 200 -PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELK 244

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 21/142 (14%)

Query: 147 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR------QVEYVDKRHCSLPN 200
             N    L + ++ +  LP  +    ++  L +  N          ++  ++     L +
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS 95

Query: 201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260
           +P         L        H+  LP           L KL +  N++  LP        
Sbjct: 96  LPVL-PPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLTSLPVLP---PG 142

Query: 261 LVELDVSRNAPSNVDSSMVYLK 282
           L EL VS N  +++ +    L 
Sbjct: 143 LQELSVSDNQLASLPALPSELC 164

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 23/113 (20%)

Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
               L+V  +G              L  +P+ +      +  L++  N++  LP      
Sbjct: 41  GNAVLNVGESG--------------LTTLPDCL---PAHITTLVIPDNNLTSLPAL---- 79

Query: 233 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285
                LR L +S N++  LP        L            + S +  L +  
Sbjct: 80  --PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
            L+EL++  N +  LP      + L  L +  N++ RLP  + +  +   +++  N    
Sbjct: 242 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN---- 294

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
                      L           R +      +  I           R  R   L  +D 
Sbjct: 295 ----------PLSERTLQA---LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

Query: 247 EIHRLPPEIQNFENLVELD 265
            +     E    +      
Sbjct: 342 LVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
            L  L +  N +  LP++   L+    + L  N +     +      +           R
Sbjct: 262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAPGYSGPIIR 319

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA----NHIRDLPKNYLDFFRLNRLRKL 241
                         +      +     E         +              L+RL + 
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
           +L     L    +L +L L  N I +L      L +L +L L  N+I  + P +     L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP-LAGLTAL 289

Query: 175 VELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
             L+++ N           + + Y+     ++ ++    +     L+ L    N + D+ 
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347

Query: 227 KNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
                   L  +  L    N+I  L P + N   + +L ++  A +N   +
Sbjct: 348 ----SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L    +LE L + +N + D+     +L  L  L  ++N+I  + P +    NL EL ++ 
Sbjct: 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG 230

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N             +  +D  +  + N+    L     L EL L AN I ++        
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLA 284

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L  L  L L++N++  + P I N +NL  L +  N
Sbjct: 285 GLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L    +L+EL L+ N ++D+      L  L  L L++N+I  L P +     L EL +  
Sbjct: 217 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N             +  ++     L ++    +   ++L  L L  N+I D+        
Sbjct: 275 NQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS----PVS 328

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L +L++L   +N++  +   + N  N+  L    N
Sbjct: 329 SLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHN 363

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
            +L + S D + Y  +L ++    N + D+      L +L  + +++N+I  + P + N 
Sbjct: 54  DRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANL 111

Query: 172 ENLVELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
            NL  L +  N             +  ++    ++ ++    L    SL++L    N + 
Sbjct: 112 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVT 168

Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           DL         L  L +L +S N++  +   +    NL  L  + N
Sbjct: 169 DLK----PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
           +L     L+    L ++L++ N I D+      L  L  L L +N+I  + P ++N  NL
Sbjct: 79  QLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP-LKNLTNL 136

Query: 175 VELDVSRNG----------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
             L++S N            + Q      +   L       L    +LE L + +N + D
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNKVSD 191

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
           +        +L  L  L  ++N+I  + P +    NL EL ++ N   ++ +
Sbjct: 192 IS----VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 23/145 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
              +  L  D   I+ +      LN L ++  S+N++  + P ++N   LV++ ++ N  
Sbjct: 45  LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-- 100

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                        + ++    L    +L  L L  N I D+         L  L +L LS
Sbjct: 101 ------------QIADITP--LANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELS 142

Query: 245 DNEIHRLPPEIQNFENLVELDVSRN 269
            N I  +   +    +L +L     
Sbjct: 143 SNTISDISA-LSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L     L EL L AN I ++      L  L  L L++N++  + P I N +NL  L +  
Sbjct: 261 LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF 318

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N            +++ +   +  + +V    L    ++  L    N I DL        
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT----PLA 372

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L R+ +LGL+D      P       N+   +  +N
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 130 ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---- 185
             +     I  +      L    K  L    +        + + +  L   R G      
Sbjct: 6   ATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG 63

Query: 186 ----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
                 +  ++  +  L ++    L+    L ++L++ N I D+         L  L  L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT----PLANLTNLTGL 117

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
            L +N+I  + P ++N  NL  L++S N  S++ +
Sbjct: 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
           +L     +   ++L  L L  N+I D+      L +L++L   +N++  +   + N  N+
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNI 355

Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
             L    N               + ++    L     + +L L+     + P NY     
Sbjct: 356 NWLSAGHN--------------QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA--N 397

Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274
           ++    +      +   P  I +  +  E D++ N PS  
Sbjct: 398 VSIPNTVKNVTGALI-APATISDGGSYTEPDITWNLPSYT 436

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
                     +L    + D+      L  + KL ++  ++  +   I+   NL  L+++ 
Sbjct: 18  DADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNG 75

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N            ++  +      + ++    L+   +L EL L+ ++I D+        
Sbjct: 76  NQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS----PLA 129

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L ++  L L  N        + N   L  L V+ +
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L     +  L L ANH          +  L  L ++++++  + P I N  +L  L ++ 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY 186

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N             + Y       + ++    +     L  L +  N I DL        
Sbjct: 187 NQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS----PLA 240

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L++L  L +  N+I  +   +++   L  L+V  N
Sbjct: 241 NLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 22/148 (14%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           + Y  +LE L L+ N I D+      L +L  L +  N+I  +   +QN  NL EL ++ 
Sbjct: 62  IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNE 119

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           +              ++ ++    L     +  L L ANH             +  L  L
Sbjct: 120 D--------------NISDISP--LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYL 160

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
            ++++++  + P I N  +L  L ++ N
Sbjct: 161 TVTESKVKDVTP-IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           +     L  L L+ N I D+      L  L       N+I  + P + N   L  L +  
Sbjct: 173 IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGN 230

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N            Q+ +++     + ++    ++    L+ L + +N I D+        
Sbjct: 231 NKITDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS----VLN 284

Query: 234 RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
            L++L  L L++N++     E I    NL  L +S+N
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 8e-16
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 16/151 (10%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
           +L EL L+ ++I D+      L ++  L L  N        + N   L  L V+ +    
Sbjct: 111 NLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD 169

Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
                    +  +   +  + ++    L    SL       N I D+         + RL
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT----PVANMTRL 223

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             L + +N+I  L P + N   L  L++  N
Sbjct: 224 NSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 15/156 (9%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L    SL       N I D+      + RL  L + +N+I  L P + N   L  L++  
Sbjct: 195 LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           N            +++ ++     + ++    L     L  L L+ N + +     +   
Sbjct: 253 NQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIG-- 308

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L  L  L LS N I  + P + +   +   D +  
Sbjct: 309 GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 7e-13
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
           ++     +     L  L +  N I DL      L++L  L +  N+I  +   +++   L
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKL 267

Query: 175 VELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
             L+V  N            Q+  +   +  L N   +V+    +L  L L  NHI D+ 
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 227 KNYLDFFRLNRLRKLGLSDNEI 248
                   L+++     ++  I
Sbjct: 328 ----PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 22/126 (17%)

Query: 151 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
              L      I+++ P   +    +   + +               S+ +V         
Sbjct: 2   AATLATLPAPINQIFP-DADLAEGIRAVLQKA--------------SVTDVVT--QEELE 44

Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
           S+ +L++    +  +         L  L  L L+ N+I  + P + N   L  L +  N 
Sbjct: 45  SITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99

Query: 271 PSNVDS 276
            +++ +
Sbjct: 100 ITDISA 105

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 21/174 (12%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPEIQN 170
           S  ++              L    N + D   +N   L  L  L L  N++  L    + 
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 171 FENLV---ELDVSRNG---------CNR--QVEYVDKRHCSLPNVPEDVLRYFRSLEELL 216
              +    +LD+S+N          C+    +  ++     L +     L     ++ L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427

Query: 217 LDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
           L +N I+ +PK      +L  L++L ++ N++  +P  I     +L ++ +  N
Sbjct: 428 LHSNKIKSIPKQ---VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 3e-12
 Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 126 RSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
           +    L +  N+I +L   +   L++LR L +S N I  L   + +  + L  LD+S N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
                         L  +         +L+ L L  N    LP     F  +++L+ LGL
Sbjct: 80  -------------KLVKISCHPT---VNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGL 122

Query: 244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
           S   + +         N+ ++ +              L+
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 21/148 (14%), Positives = 52/148 (35%), Gaps = 18/148 (12%)

Query: 126 RSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNG 183
           ++L    + ++         +   + +     + +    +           + LD S N 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN- 334

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
                         L +   +   +   LE L+L  N +++L K      ++  L++L +
Sbjct: 335 -------------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 244 SDNEIHRLPPEI--QNFENLVELDVSRN 269
           S N +     +      ++L+ L++S N
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 21/161 (13%)

Query: 121 VLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
            +     L  L++  N I+ L  + F     L  L LS N++ ++        NL  LD+
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDL 97

Query: 180 SRNGCNRQVEYVDKRHCSLPNVPED-VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
           S N              +   +P          L+ L L   H+       +       +
Sbjct: 98  SFN--------------AFDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNI 140

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMV 279
            K+ L   E +    + +  ++     +    P+N +   +
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 19/148 (12%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVEL 177
            V ++ + LE L L  N +  +         L+ L LS N    LP   E  N   L  L
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELL-LDANHIRDLPKNYLDFFRLN 236
            +S                 L       + +    + LL L   +        L  F   
Sbjct: 121 GLSTT--------------HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVEL 264
            L  +  ++ E H +          +EL
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLEL 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 6e-16
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFR---LNRLRKLGLSDNEIHRLPPEI-QNFENLVEL 177
           L     +       ++I+D  +N F     + +R L LS   +  L   + +  ++L  L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
           +++ N               +  + ++      +L+ L L  N + +L  +  +F+ L +
Sbjct: 296 NLAYN--------------KINKIADEAFYGLDNLQVLNLSYNLLGELYSS--NFYGLPK 339

Query: 238 LRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNA 270
           +  + L  N I  +  +  +  E L  LD+  NA
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 9e-15
 Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 19/163 (11%)

Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHR-LPPEI-QNFENLVEL 177
           V +   + E LLL  N+IR +  + F  L +L+ L L        +  E  +N  NL  L
Sbjct: 19  VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
           D+  +               +  +  D  +    L EL L    + D       F  L  
Sbjct: 79  DLGSS--------------KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 238 LRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNAPSNVDSSM 278
           L +L LS N+I  L          +L  +D S N    V    
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 9e-15
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 127 SLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRN 182
           +   + L  N + +L       R+  L+ L L+ N       +       +L +L +  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                      +      +  DV      L+ L L+ N++  LP     F  L  LR L 
Sbjct: 462 ML---------QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV--FSHLTALRGLS 510

Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
           L+ N +  L        NL  LD+SRN     +  +
Sbjct: 511 LNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDV 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF---RLNRLRKLGLSDNEIHRLPPE---- 167
            LY         SL+ +   +N I  + ++     +   L    L+ N ++         
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 168 -IQNFEN--LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
            +  F N  L  LDVS NG    +        ++       L     +       ++I+D
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDIT--GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
             +N       + +R L LS   +  L   + +  ++L  L+++ N  + +    
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 4e-14
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 19/171 (11%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNF 171
            L             +  + L  NHI  +    F+ L +L+ L L DN +      I   
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFI 380

Query: 172 ENLVELDVSRNGC------NRQVEYVDKRHCSLPNVPEDV-LRYFRSLEELLLDANHIRD 224
            ++ ++ +S N        N     +      L N+     L     L+ L+L+ N    
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPE------IQNFENLVELDVSRN 269
              +         L +L L +N +             +   +L  L ++ N
Sbjct: 441 CSGDQT-PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 24/164 (14%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDV 179
           + +  S+ ++ L  N +  LPK     N +    LS+N +  L     +    +L  L +
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIH---LSENRLENLDILYFLLRVPHLQILIL 433

Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLD---FFRL 235
           ++N                 +   D       SLE+L L  N ++   +  L    F  L
Sbjct: 434 NQN--------------RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
           + L+ L L+ N ++ LPP +  +   L  L ++ N  + +  + 
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 5e-13
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
           +  V    + L+ L L  N I  +    F  L+ L+ L LS N +  L          + 
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341

Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
            +D+ +N               +  + +   ++   L+ L L  N +  +         +
Sbjct: 342 YIDLQKN--------------HIAIIQDQTFKFLEKLQTLDLRDNALTTIH-------FI 380

Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
             +  + LS N++  LP   +       + +S N   N+D     L++
Sbjct: 381 PSIPDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRV 425

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE---IQNFEN 173
            K+  R   +L  L L ++ I  L  + F+ L  L +L L    +     +    +N + 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
           L  LD+S+N           +  SL            SL+ +   +N I  + ++ L+  
Sbjct: 125 LTRLDLSKN-----------QIRSLY--LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 234 RLNRLRKLGLSDNEIHRLPPE-----IQNFEN--LVELDVSRN 269
           +   L    L+ N ++          +  F N  L  LDVS N
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
           DV      L+ L L+ N++  LP   F  L  LR L L+ N +  L        NL  LD
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILD 532

Query: 179 VSRN 182
           +SRN
Sbjct: 533 ISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
            L      V  +  +L  L L++N +  L  N      L  L +S N++    P++  F 
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDV--FV 547

Query: 173 NLVELDVSRN 182
           +L  LD++ N
Sbjct: 548 SLSVLDITHN 557

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 1e-15
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 24/151 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
                EL L+  ++  LP N     ++  L ++ N +  LP       +L  LD   N  
Sbjct: 58  INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELP---ASLEYLDACDNRL 112

Query: 185 NR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
           +        ++++D  +  L  +PE        LE +  D N +  LP+          L
Sbjct: 113 STLPELPASLKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPE------LPTSL 162

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             L + +N++  LP      E+L  LDVS N
Sbjct: 163 EVLSVRNNQLTFLPELP---ESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 8e-15
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 26/168 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
              +  L +  N +  LP+       L  L   DN +  LP    +   L  LDV  N  
Sbjct: 79  PPQITVLEITQNALISLPEL---PASLEYLDACDNRLSTLPELPAS---LKHLDVDNNQL 132

Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
                    +EY++  +  L  +PE       SLE L +  N +  LP+          L
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPEL------PESL 182

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVE----LDVSRNAPSNVDSSMVYLK 282
             L +S N +  LP       +  E         N  +++  +++ L 
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 7/154 (4%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRK----LGLSDNEIHRLPPEIQNFENLVELDVSR 181
            SLE L +  N +  LP    R +   +        +N I  +P  I + +    + +  
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
              N     + +        P+                   R L      +F  N+   +
Sbjct: 240 ---NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
               +              L  L  + +A +   
Sbjct: 297 SQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 16/143 (11%), Positives = 36/143 (25%), Gaps = 8/143 (5%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNGC 184
            +        N I  +P+N   L+    + L DN +       +       +    R   
Sbjct: 207 ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL------ 238
           +      +  H  L +         +   ++    +              L+RL      
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQ-SDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325

Query: 239 RKLGLSDNEIHRLPPEIQNFENL 261
           R       ++     ++     L
Sbjct: 326 RNTSGFREQVAAWLEKLSASAEL 348

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 25/162 (15%)

Query: 111 TSKLKLYS-------KDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIH 162
           T KL L S                L  L L+ N ++ LP   F  L  L  L ++DN++ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
            LP  +  F+ LV L   R   N+           L ++P  V      L  L L  N +
Sbjct: 99  ALPIGV--FDQLVNLAELRLDRNQ-----------LKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
           + LPK    F +L  L++L L +N++ R+P     F+ L EL
Sbjct: 146 QSLPKGV--FDKLTSLKELRLYNNQLKRVPEGA--FDKLTEL 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 5e-15
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 23/152 (15%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L   ++L  L LD N I+DL  +   L +L+ L L  N I  +   + +   L  L +  
Sbjct: 83  LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 140

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N    ++  +             VL     L+ L L+ N I D+         L +L+ L
Sbjct: 141 N----KITDIT------------VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNL 180

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273
            LS N I  L   +   +NL  L++      N
Sbjct: 181 YLSKNHISDLRA-LAGLKNLDVLELFSQECLN 211

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 9e-15
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 28/162 (17%)

Query: 113 KLKLYSKDV-----LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE 167
           ++   + D+     ++Y  ++ +L L+ N + D+ K    L  L  L L +N+I  L   
Sbjct: 47  QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS- 104

Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
           +++ + L  L +  NG +            +       L +   LE L L  N I D+  
Sbjct: 105 LKDLKKLKSLSLEHNGIS-----------DING-----LVHLPQLESLYLGNNKITDIT- 147

Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
                 RL +L  L L DN+I  + P +     L  L +S+N
Sbjct: 148 ---VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 1e-14
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 23/155 (14%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
              F    +  L    + D       LN + ++  ++++I  +   IQ   N+ +L ++ 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG 74

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N           +   +       L   ++L  L LD N I+DL         L +L+ L
Sbjct: 75  N-----------KLTDIKP-----LTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSL 114

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
            L  N I  +   + +   L  L +  N  +++  
Sbjct: 115 SLEHNGISDING-LVHLPQLESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 8e-07
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
            VL     L+ L L+ N I D+      L +L+ L LS N I  L   +   +NL  L++
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLEL 204

Query: 180 SRNGCNRQVEYVDKRHCSLPNV 201
               C  +             V
Sbjct: 205 FSQECLNKPINHQSNLVVPNTV 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L+    + EL L  N ++++      L  ++ L L+  +I  + P +    NL  L +  
Sbjct: 81  LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N    Q+  +              L    +L+ L +    + DL         L++L  L
Sbjct: 139 N----QITNI------------SPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTL 178

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
              DN+I  + P + +  NL+E+ +  N  S+V  
Sbjct: 179 KADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 23/170 (13%)

Query: 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
                  +     K  +           +  L      +  +      LN L  L L DN
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN 73

Query: 160 EIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
           +I  L P ++N   + EL++S N              ++       +   +S++ L L +
Sbjct: 74  QITDLAP-LKNLTKITELELSGNPLK-----------NVSA-----IAGLQSIKTLDLTS 116

Query: 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             I D+         L+ L+ L L  N+I  + P +    NL  L +   
Sbjct: 117 TQITDVT----PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           +   +S++ L L +  I D+      L+ L+ L L  N+I  + P +    NL  L +  
Sbjct: 103 IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN 160

Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
                        ++  +      + ++    L    +L E+ L  N I D+        
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS----PLA 214

Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             + L  + L++  I   P    N  NLV  +V + 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNN--NLVVPNVVKG 248

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 24/152 (15%)

Query: 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDN-EIHRLPPEI-QNFENLVELDVSRN 182
            S + L L   H+R +P + F  L  + ++ +S +  + +L      N   +  +++   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
                         +L  +  D L+    L+ L +    ++  P +    +  +    L 
Sbjct: 91  -------------RNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILE 136

Query: 243 LSDN-EIHRLPPEIQNFENL----VELDVSRN 269
           ++DN  +  +P     F+ L    + L +  N
Sbjct: 137 ITDNPYMTSIPVNA--FQGLCNETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 22/170 (12%), Positives = 58/170 (34%), Gaps = 28/170 (16%)

Query: 126 RSLEELLL-DANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSR 181
             +  + + +  ++  +  +  + L  L+ LG+ +  +   P    + + +    L+++ 
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRS-LEELLLDANHIRDLPKNYLDFFRLNRLRK 240
           N               + ++P +  +   +    L L  N    +       F   +L  
Sbjct: 140 N-------------PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY---AFNGTKLDA 183

Query: 241 LGLSDN-EIHRLPPEI--QNFENLVELDVSRNA----PSNVDSSMVYLKL 283
           + L+ N  +  +  +     +     LDVS+ +    PS     +  L  
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 29/163 (17%)

Query: 118 SKDVLRYFRSLEELLLDANHIRDLP--KNFFRLNRLRKLGLSDN-EIHRLPPEIQNFENL 174
             D L+    L+ L +    ++  P     +  +    L ++DN  +  +P     F+ L
Sbjct: 97  DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA--FQGL 154

Query: 175 ----VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
               + L +  NG                +V        +     L    ++  + K+  
Sbjct: 155 CNETLTLKLYNNG--------------FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-- 198

Query: 231 DFFRL-NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS 272
            F  + +    L +S   +  LP +    E+L EL ++RN  +
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKG--LEHLKEL-IARNTWT 238

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 51/202 (25%)

Query: 110 WTSKLKLY-------SKDVLRYFRSLEELLLD--------------------------AN 136
              +L+          K     F  LE++ +                           AN
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 137 HIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN------------ 182
           ++  +    F+ L  L+ L +S+  I  LP     +    V LD+  N            
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
           G + +   +      +  +        +  E  L D N++ +LP +   F   +    L 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND--VFHGASGPVILD 208

Query: 243 LSDNEIHRLPPEIQNFENLVEL 264
           +S   IH LP      ENL +L
Sbjct: 209 ISRTRIHSLPSYG--LENLKKL 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 25/153 (16%)

Query: 125 FRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEI-HRLPPEI-QNFENLVELDVSR 181
            R+  EL      +R + K  F     L K+ +S N++   +  ++  N   L E+ + +
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
              N            L  +  +  +   +L+ LL+    I+ LP   +      +   L
Sbjct: 89  A--NN-----------LLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLL 133

Query: 242 GLSDN-EIHRLPPEIQNFENL----VELDVSRN 269
            + DN  IH +      F  L    V L +++N
Sbjct: 134 DIQDNINIHTIERNS--FVGLSFESVILWLNKN 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 21/146 (14%)

Query: 127 SLEELLLDAN-HIRDLPKNFFR--LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
               L +  N +I  + +N F         L L+ N I  +     N   L EL++S N 
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN- 187

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
            N            L  +P DV         L +    I  LP   L+   L +LR    
Sbjct: 188 -NN-----------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE--NLKKLRARST 233

Query: 244 SDNEIHRLPPEIQNFENLVELDVSRN 269
               + +LP  ++    L+E  ++  
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYP 256

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%)

Query: 125 FRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 182
             +LE L + +N+    +P      + L+ L +S N++       I     L  L++S N
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 183 --------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDF 232
                      + ++Y+          +P+ +     +L  L L  NH    +P     F
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---F 314

Query: 233 FRLNRLRKLGLSDNEIH-RLPPE-IQNFENLVELDVSRN 269
              + L  L LS N     LP + +     L  LD+S N
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 122 LRYFRSLEELLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDV 179
           L    +L  + L  N +   +PK   RL  L  L LS+N     +P E+ +  +L+ LD+
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 180 SRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
           + N                   +             ++     +E     N +       
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRY----VYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 230 LDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
               RL+      ++         P   N  +++ LD+S N
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 9e-13
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 125 FRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPE-IQNFENLVELDVSR 181
             +L  L L  NH    +P  F   + L  L LS N     LP + +     L  LD+S 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 182 NG-----------CNRQVEYVDKRHCSLP-NVPEDVLR-YFRSLEELLLDANHIR-DLPK 227
           N             +  +  +D    +    +  ++ +    +L+EL L  N     +P 
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 228 NYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
                   + L  L LS N +   +P  + +   L +L +  N
Sbjct: 413 ---TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 9e-13
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 124 YFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSR 181
              +L+EL L  N     +P      + L  L LS N +   +P  + +   L +L +  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 182 NG---------CN-RQVEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIRD-LPKNY 229
           N             + +E +      L   +P   L    +L  + L  N +   +PK  
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPK-- 508

Query: 230 LDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
               RL  L  L LS+N     +P E+ +  +L+ LD++ N
Sbjct: 509 -WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 141 LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQV------------ 188
           +  +   L  L  L LS++ I+      +   +L  LD+SRN  +  V            
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 189 EYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDN 246
           ++++    +L             SLE L L AN I       ++       L+ L +S N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 247 EIH-RLPPEIQNFENLVELDVSRN 269
           +I   +   +    NL  LDVS N
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 122 LRYFRSLEELLLDANHIR---DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVEL 177
           ++     +E     N +       +   RL+      ++         P   N  +++ L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 178 DVSRN---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFF 233
           D+S N   G                 +P++ +     L  L L  N I   +P       
Sbjct: 638 DMSYNMLSG----------------YIPKE-IGSMPYLFILNLGHNDISGSIPDE---VG 677

Query: 234 RLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
            L  L  L LS N++  R+P  +     L E+D+S N
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 23/145 (15%)

Query: 131 LLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIH---RLPPEIQNFENLVELDVSRNGCNR 186
             + AN I              ++   + N +        ++         +++      
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSD 245
                                   S+  L +  N +   +PK   +   +  L  L L  
Sbjct: 623 HT-------------SPT-FDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGH 665

Query: 246 NEIH-RLPPEIQNFENLVELDVSRN 269
           N+I   +P E+ +   L  LD+S N
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSN 690

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 17/178 (9%)

Query: 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
              + E + +   K  +          S+++++ + + I+ + +    L  + KL L+ N
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN 78

Query: 160 EIHRLPPEIQNFENLVELDVSRNGCNR--------QVEYVDKRHCSLPNVPEDVLRYFRS 211
           ++  + P + N +NL  L +  N            +++ +   H  + ++  + L +   
Sbjct: 79  KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 135

Query: 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           LE L L  N I D+        RL +L  L L DN+I  + P +     L  L +S+N
Sbjct: 136 LESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L +   LE L L  N I D+     RL +L  L L DN+I  + P +     L  L +S+
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N     +  +              L   ++L+ L L +    + P N+     L     +
Sbjct: 188 N----HISDL------------RALAGLKNLDVLELFSQECLNKPINHQSN--LVVPNTV 229

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
             +D  +   P  I +  +  + +V  + P   + 
Sbjct: 230 KNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
            VL     L+ L L+ N I D+      L +L+ L LS N I  L   +   +NL  L++
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLEL 207

Query: 180 SRNGCNRQVEYVDKRHCSLPNV 201
               C  +             V
Sbjct: 208 FSQECLNKPINHQSNLVVPNTV 229

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 8e-13
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
               +     +     L +L+  +N+I  L     +   L  L    N++  L   +   
Sbjct: 50  HNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105

Query: 172 ENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
             L  L+   N         N  + Y++    +L  +    + +   L EL    N    
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKIT 162

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
                 D     +L  L  S N+I  L   +   + L  L+   N
Sbjct: 163 KL----DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 22/161 (13%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
              L  L  D N +  L     +   L  L  + N +  +   + +   L ELD   N  
Sbjct: 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK 160

Query: 183 ------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
                     Q+  +D     +  +    +   + L  L  D N+I  L     D  +  
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-----DLNQNI 212

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
           +L  L  S N++  +   +     L   D S N  + +D S
Sbjct: 213 QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS 251

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
           +L  L  D+N + +L      L +L  L    N++ +L   +     L  L+ +RN    
Sbjct: 86  NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141

Query: 183 ---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
                N Q+  +D          +  +     L  L    N I +L     D  +   L 
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL-----DVSQNKLLN 194

Query: 240 KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           +L    N I +L   +     L  LD S N
Sbjct: 195 RLNCDTNNITKLD--LNQNIQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN------ 182
            E+            +  +L  L  L   ++ I  +   I+    L +L  + N      
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD 80

Query: 183 -GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
              N  + Y+      L N+    +     L  L  D N +  L        +   L  L
Sbjct: 81  LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYL 132

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
             + N +  +   + +   L ELD   N
Sbjct: 133 NCARNTLTEID--VSHNTQLTELDCHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 20/155 (12%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L     L  L   +N + ++      L +L     S N +  L         L  L   +
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQ 263

Query: 182 N-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
                     N Q+ Y          + E  + +   L  L   A  I +L     D  +
Sbjct: 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL-----DLSQ 316

Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
             +L  L L++ E+  L   + +   L  L     
Sbjct: 317 NPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 20/171 (11%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
              K  +K  +     L  L    N I +L     +   L +L    N I +L   +   
Sbjct: 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQN 211

Query: 172 ENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
             L  LD S N           Q+ Y D     L  +          L  L      + +
Sbjct: 212 IQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQTDLLE 268

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
           +     D     +L           +   ++ +   L  LD      + +D
Sbjct: 269 I-----DLTHNTQLIYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITELD 313

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 24/135 (17%)

Query: 144 NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP 202
           ++F  +       +  E+        +    L  LD   +               +    
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-----------DMTG-- 59

Query: 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV 262
              +     L +L+  +N+I  L     D  +   L  L    N++  L   +     L 
Sbjct: 60  ---IEKLTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109

Query: 263 ELDVSRNAPSNVDSS 277
            L+   N  + +D S
Sbjct: 110 YLNCDTNKLTKLDVS 124

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 23/153 (15%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
            L  L   A  I +L     +  +L  L L++ E+  L   + +   L  L         
Sbjct: 298 QLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA---- 349

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN---RLRKLGL 243
                      + +     +    +L            +PK  L    L        L  
Sbjct: 350 ----------HIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
             N ++  P +   ++         N  ++  +
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 24/177 (13%)

Query: 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
                  V +   K  +      +    ++    D ++I+ L         L++L LS N
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN 73

Query: 160 EIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
           +I  L P +++   L EL V+RN    +++       +L  +P         L  L LD 
Sbjct: 74  QISDLSP-LKDLTKLEELSVNRN----RLK-------NLNGIP------SACLSRLFLDN 115

Query: 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
           N +RD          L  L  L + +N++  +   +     L  LD+  N  +N   
Sbjct: 116 NELRDTD----SLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 24/148 (16%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           +++F +L+EL L  N I DL      L +L +L ++ N +  L         L  L +  
Sbjct: 59  MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDN 115

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N               L +   D L + ++LE L +  N ++ +         L++L  L
Sbjct: 116 N--------------ELRDT--DSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVL 155

Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L  NEI      +   + +  +D++  
Sbjct: 156 DLHGNEITNTGG-LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
           +LE L +  N ++ +      L++L  L L  NEI      +   + +  +D++   C  
Sbjct: 129 NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQKCVN 186

Query: 187 QVEYVDKRHCSLPNV 201
           +             V
Sbjct: 187 EPVKYQPELYITNTV 201

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 27/164 (16%)

Query: 113 KLKLYSKDV-----LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE 167
            + L + +V     + Y  ++++L ++  H  +       L+ L +L +   ++      
Sbjct: 48  YITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIP 106

Query: 168 -IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDL 225
            +    +L  LD+S +  +              +     +     +  + L  N  I D+
Sbjct: 107 NLSGLTSLTLLDISHSAHD--------------DSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
                    L  L+ L +  + +H     I++F  L +L     
Sbjct: 153 M----PLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 13/153 (8%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
           F++    LL  +   ++ +   ++N L  + L++  +  L   I+   N+ +L ++    
Sbjct: 22  FKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHA 78

Query: 183 ------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
                      +E +      + +     L    SL  L +  +   D     ++   L 
Sbjct: 79  TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLP 136

Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           ++  + LS N        ++    L  L++  +
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A Length = 270

 Score = 63.7 bits (154), Expect = 5e-12
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 1   MIMLSKFF---NKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHK 57
              + + F    K  ++     KI +D+I  + +  +     S   + + ++IRE+LC +
Sbjct: 37  GNAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIR 96

Query: 58  TYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLY 117
            YL A E FNEWF + NS      P +     ++E+V HE + ++YE     W   L   
Sbjct: 97  AYLEAHETFNEWFKHMNSVPQ--KPALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDAL 154

Query: 118 SKDVLRYFRSLEELL 132
           + DV     ++   +
Sbjct: 155 TADVKEKMYNVLLFV 169

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 20/149 (13%)

Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVS 180
            L+ L +   H  +      R    L  L LSDN        I       F  L  L + 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
             G             +   V   +      L+ L L  N +RD           ++L  
Sbjct: 210 NAGME-----------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNS 257

Query: 241 LGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           L LS   + ++P  +     L  LD+S N
Sbjct: 258 LNLSFTGLKQVPKGL--PAKLSVLDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 30/168 (17%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNF-----FRLNRLRKLGLSDNEIHRLPP 166
           +    +S + +R F +L  L L  N               +   L+ L L +  +     
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 167 EI----QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANH 221
                      L  LD+S N              SL +        +   L  L L    
Sbjct: 219 VCSALAAARVQLQGLDLSHN--------------SLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
           ++ +PK         +L  L LS N + R P        +  L +  N
Sbjct: 265 LKQVPKGLP-----AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 27/144 (18%)

Query: 111 TSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN----FFRLNRLRKLGLSDNEIHRLPP 166
             +  L S      F +L+ L L    +               +L+ L LS N +     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 167 EI--QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
                    L  L++S                 L  VP+ +      L  L L  N +  
Sbjct: 246 APSCDWPSQLNSLNLSFT--------------GLKQVPKGL---PAKLSVLDLSYNRLDR 288

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEI 248
            P        L ++  L L  N  
Sbjct: 289 NPS----PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 17/151 (11%)

Query: 126 RSLEELLLDANHIRDL--PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
           RSLE LL   +   DL    +  +   L++L +    I    P    F  L  L +S   
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI----PSRILFGALRVLGISG-- 96

Query: 184 CNRQVEYVDKRHCSL--PNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL--NRLR 239
               ++ +   +  +     P  +      L  L L             +  +     L+
Sbjct: 97  ----LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 240 KLGLSDNEIHRLP-PEIQNFENLVELDVSRN 269
            L ++          +++ F  L  LD+S N
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDNEIHRLPPEIQ 169
                    +      L+ L L  N +RD     +    ++L  L LS   + ++P  + 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL- 272

Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
               L  LD+S N               L   P         +  L L  N   D
Sbjct: 273 -PAKLSVLDLSYN--------------RLDRNPS--PDELPQVGNLSLKGNPFLD 310

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 25/149 (16%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVSR 181
            L+ L+L  N +++  K       +  L   D  ++ L            E+++ L++S 
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N               L       L     ++ L L  N I  +PK   D   L  L++L
Sbjct: 438 NM--------------LTGSVFRCL--PPKVKVLDLHNNRIMSIPK---DVTHLQALQEL 478

Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRN 269
            ++ N++  +P  +     +L  + +  N
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 127 SLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
             + L L  N I +L   +   L+ LR L LS N I  L   +    ++L  LDVS N  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-- 110

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
                        L N+    +    SL  L L  N    LP     F  L +L  LGLS
Sbjct: 111 ------------RLQNISCCPM---ASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLS 154

Query: 245 DNEIHRLPPEIQNFENLVEL 264
             +  +L        +L  +
Sbjct: 155 AAKFRQLDLLPVAHLHLSCI 174

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 17/150 (11%)

Query: 121 VLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
            + +   L  L L  N IR L  + F     L  L +S N +  +        +L  LD+
Sbjct: 71  DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDL 128

Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
           S N  +            LP            L  L L A   R L    +    L+ + 
Sbjct: 129 SFNDFD-----------VLP--VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 240 KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            L L    I     E     N   L +  +
Sbjct: 176 -LDLVSYHIKGGETESLQIPNTTVLHLVFH 204

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
             ++ L L  N I  +PK+   L  L++L ++ N++  +P  +     +L  + +  N
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 30/152 (19%)

Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRL-RKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 182
            +L  +  D N I   +P ++   ++L   + +S N +  ++PP   N  NL  +D+SRN
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 183 ---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRL 238
              G                +         ++ +++ L  N +  DL K          L
Sbjct: 208 MLEG----------------DASVL-FGSDKNTQKIHLAKNSLAFDLGK----VGLSKNL 246

Query: 239 RKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
             L L +N I+  LP  +   + L  L+VS N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN- 182
             L  L +   ++   +P    ++  L  L  S N +   LPP I +  NLV +    N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 183 ----------GCNRQVEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIR-DLPKNYL 230
                       ++    +      L   +P        +L  + L  N +  D      
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASV--- 215

Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
            F      +K+ L+ N +     ++   +NL  LD+  N
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 31/161 (19%)

Query: 120 DVLRYFRSLEELLLDANHIR---DLPKNFFRLNRLRKLGLSD-NEIH-RLPPEIQNFENL 174
           D       +  L L   ++     +P +   L  L  L +   N +   +PP I     L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 175 VELDVSRN---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYL 230
             L ++     G                 +P+  L   ++L  L    N +   LP +  
Sbjct: 104 HYLYITHTNVSG----------------AIPDF-LSQIKTLVTLDFSYNALSGTLPPS-- 144

Query: 231 DFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVE-LDVSRN 269
               L  L  +    N I   +P    +F  L   + +SRN
Sbjct: 145 -ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 165 PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
              +   ENL EL +                  L ++    LR    L  L +  + +R 
Sbjct: 24  LHHLPGAENLTELYIENQQ-------------HLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG 284
           +  +   F    RL +L LS N +  L  +     +L EL +S N P +   ++ +L+  
Sbjct: 71  VAPD--AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN-PLHCSCALRWLQRW 127

Query: 285 RKDG 288
            ++G
Sbjct: 128 EEEG 131

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
             LR    L  L +  + +R +  + F    RL +L LS N +  L  +     +L EL 
Sbjct: 50  RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV 109

Query: 179 VSRN 182
           +S N
Sbjct: 110 LSGN 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 33/136 (24%), Positives = 45/136 (33%), Gaps = 41/136 (30%)

Query: 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQV 188
            EL LD N    +PK       L  + LS+N I  L  +   F N+ +L           
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS--FSNMTQLL---------- 81

Query: 189 EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI 248
                                     L+L  N +R +P    D   L  LR L L  N+I
Sbjct: 82  -------------------------TLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDI 114

Query: 249 HRLPPEIQNFENLVEL 264
             +P     F +L  L
Sbjct: 115 SVVPEGA--FNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 184 CNRQVEYVD---KRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
           C   V  V    K    LP  +P DV        EL LD N    +PK   +      L 
Sbjct: 10  CLDTV--VRCSNKGLKVLPKGIPRDV-------TELYLDGNQFTLVPK---ELSNYKHLT 57

Query: 240 KLGLSDNEIHRLPPEIQNFENLVELD 265
            + LS+N I  L  +   F N+ +L 
Sbjct: 58  LIDLSNNRISTLSNQS--FSNMTQLL 81

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 111 TSKLKLYSKD------VLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHR 163
            ++L L           L  ++ L  + L  N I  L    F  + +L  L LS N +  
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 164 LPPEIQNFENLVEL 177
           +PP    F+ L  L
Sbjct: 93  IPPRT--FDGLKSL 104

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)

Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH 162
           T KL L        S    R    L  L LD N ++ L    F  L  L  LGL++N++ 
Sbjct: 37  TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
            LP  +  F++L +LD    G N+           L ++P  V      L+EL L+ N +
Sbjct: 97  SLPLGV--FDHLTQLDKLYLGGNQ-----------LKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
           + +P    D  +L  L+ L LS N++  +P     F+ L +L
Sbjct: 144 QSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGA--FDRLGKL 181

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
            L  L L  N +  LP   F  L +L KL L  N++  LP  +  F+ L +L   R   N
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV--FDRLTKLKELRLNTN 141

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
           +           L ++P        +L+ L L  N ++ +P     F RL +L+ + L  
Sbjct: 142 Q-----------LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITLFG 188

Query: 246 N 246
           N
Sbjct: 189 N 189

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 41/259 (15%), Positives = 75/259 (28%), Gaps = 45/259 (17%)

Query: 59  YLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYS 118
           +++ EEA          T       +      +   +              W   L   S
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAAS 308

Query: 119 KD----------VLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
            +          +     S +E +L  +      ++     +L +  LS  +   L  E+
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSEL 368

Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE------------------------- 203
           ++ + L EL+     C   +  + +    L    E                         
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428

Query: 204 ------DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQN 257
                  +   +  +  L L    +  L   +L+  +L  +  L LS N +  LPP +  
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVLC--HLE--QLLLVTHLDLSHNRLRALPPALAA 484

Query: 258 FENLVELDVSRNAPSNVDS 276
              L  L  S NA  NVD 
Sbjct: 485 LRCLEVLQASDNALENVDG 503

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
           R+     L +  + +          +R L L+  ++  L   ++    +  LD+S N   
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHN--- 473

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
            ++  +     +L             LE L    N + ++         L RL++L L +
Sbjct: 474 -RLRALPPALAALRC-----------LEVLQASDNALENVD----GVANLPRLQELLLCN 517

Query: 246 NEIHRLP--PEIQNFENLVELDVSRN 269
           N + +      + +   LV L++  N
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 14/106 (13%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L     +  L L  N +R LP     L  L  L  SDN +  +   + N   L EL +  
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN 517

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
           N    +++           +    L     L  L L  N +     
Sbjct: 518 N----RLQ-------QSAAIQP--LVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDV 179
           L   R LE L    N + ++      L RL++L L +N + +      + +   LV L++
Sbjct: 482 LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 180 SRNGCNRQVEYVDKRHCSLPNV 201
             N   ++    ++    LP+V
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSV 562

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 43/138 (31%)

Query: 129 EELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
            ELLL+ N +  +  +  F RL  L KL L  N++  + P    FE              
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--FEGASH---------- 79

Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
                                    ++EL L  N I+++         L++L+ L L DN
Sbjct: 80  -------------------------IQELQLGENKIKEISNKMFL--GLHQLKTLNLYDN 112

Query: 247 EIHRLPPEIQNFENLVEL 264
           +I  + P    FE+L  L
Sbjct: 113 QISCVMPGS--FEHLNSL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 16/85 (18%)

Query: 184 CNRQVEYVD---KRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
           C      VD   +    +P ++P           ELLL+ N +  +  + L F RL  L 
Sbjct: 8   CEGTT--VDCTGRGLKEIPRDIPLHT-------TELLLNDNELGRISSDGL-FGRLPHLV 57

Query: 240 KLGLSDNEIHRLPPEIQNFENLVEL 264
           KL L  N++  + P    FE    +
Sbjct: 58  KLELKRNQLTGIEPNA--FEGASHI 80

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
            ++EL L  N I+++    F  L++L+ L L DN+I  + P    FE+L  L
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFEN 173
           ++ S  +      L +L L  N +  +  N F   + +++L L +N+I  +  ++  F  
Sbjct: 43  RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM--FLG 100

Query: 174 LVEL 177
           L +L
Sbjct: 101 LHQL 104

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
           ++  L L  N + D+      L  L  L L+ N++  LP  +     NL EL +  N   
Sbjct: 64  NVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN--- 119

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
                       L ++P+ V     +L  L L  N ++ LPK   D  +L  L +L LS 
Sbjct: 120 -----------QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSY 166

Query: 246 NEIHRLPPEIQNFENLVEL 264
           N++  LP  +  F+ L +L
Sbjct: 167 NQLQSLPEGV--FDKLTQL 183

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
            S+++++ + + I+ +      L  +R L L  N++H +       + L  L        
Sbjct: 41  NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISA----LKELTNL-------- 87

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
               Y+      L ++P  V     +L+EL+L  N ++ LP    D  +L  L  L L+ 
Sbjct: 88  ---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--KLTNLTYLNLAH 142

Query: 246 NEIHRLPPEIQNFENLVEL 264
           N++  LP  +  F+ L  L
Sbjct: 143 NQLQSLPKGV--FDKLTNL 159

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 18/139 (12%)

Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
           +L  L+L  N ++ LP   F +L  L++L L +N++  LP  +  F+ L  L       N
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDKLTNLTYLNLAHN 143

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
           +           L ++P+ V     +L EL L  N ++ LP+   D  +L +L+ L L  
Sbjct: 144 Q-----------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQ 190

Query: 246 NEIHRLPPEIQNFENLVEL 264
           N++  +P  +  F+ L  L
Sbjct: 191 NQLKSVPDGV--FDRLTSL 207

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 129 EELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
             L L+ N ++ LP   F  L  L +L L  N++  LP  +  F  L  L       N+ 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLSTNQ- 87

Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
                     L ++P  V      L+EL L+ N ++ LP    D  +L +L+ L L  N+
Sbjct: 88  ----------LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ 135

Query: 248 IHRLPPEIQNFENLVEL 264
           +  +P  +  F+ L  L
Sbjct: 136 LKSVPDGV--FDRLTSL 150

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 40/142 (28%)

Query: 129 EELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
           + L L  N I  L    F  L  L++L L  N++  LP  +  F++L +L          
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV--FDSLTQLT--------- 91

Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
                                      L L  N +  LP    D  RL  L++L +  N+
Sbjct: 92  --------------------------VLDLGTNQLTVLPSAVFD--RLVHLKELFMCCNK 123

Query: 248 IHRLPPEIQNFENLVELDVSRN 269
           +  LP  I+   +L  L + +N
Sbjct: 124 LTELPRGIERLTHLTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 24/144 (16%)

Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH 162
              L L+          V     +L+EL L +N +  LP   F  L +L  L L  N++ 
Sbjct: 42  AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
            LP  +  F+ LV L      CN+           L  +P  + R    L  L LD N +
Sbjct: 102 VLPSAV--FDRLVHLKELFMCCNK-----------LTELPRGIER-LTHLTHLALDQNQL 147

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDN 246
           + +P    D  RL+ L    L  N
Sbjct: 148 KSIPHGAFD--RLSSLTHAYLFGN 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L   ++ + L L  N+I  +  +   +  LR L L  N I ++       + L EL +S 
Sbjct: 44  LSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
           N    Q+        SL       +    +L  L +  N I +          L++L  L
Sbjct: 103 N----QIA-------SLSG-----IEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDL 145

Query: 242 GLSDNEIHRLPPEIQNFEN 260
            L+ N ++    E      
Sbjct: 146 LLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 22/142 (15%)

Query: 130 ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVE 189
           EL      I  +      L   + L LS N I ++   +   ENL  L + RN     ++
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRN----LIK 83

Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249
            +           E++     +LEEL +  N I  L        +L  LR L +S+N+I 
Sbjct: 84  KI-----------ENLDAVADTLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKIT 128

Query: 250 RLPP--EIQNFENLVELDVSRN 269
                 ++   + L +L ++ N
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           L    +L  L L  N I+ +       + L +L +S N+I  L   I+   NL  L +S 
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSN 124

Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI------RDLPKNYLDF--F 233
           N    ++        +   +  D L     LE+LLL  N +       +    Y      
Sbjct: 125 N----KIT-------NWGEI--DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

Query: 234 RLNRLRKL 241
           RL  L+KL
Sbjct: 172 RLPNLKKL 179

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 133 LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG--------C 184
           L A  I      +    R R+L L   +I  +       +    +D S N          
Sbjct: 4   LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 62

Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
            R+++ +   +  +  + E + +    L EL+L  N + +L  +      L  L  L + 
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCIL 121

Query: 245 DNEIHRLP 252
            N +    
Sbjct: 122 RNPVTNKK 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 18/132 (13%)

Query: 123 RYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
           R    ++EL+LD +   +            L  L   +  +  +   +     L +L++S
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELS 72

Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
            N               +    E +     +L  L L  N I+DL        +L  L+ 
Sbjct: 73  DN--------------RVSGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKS 117

Query: 241 LGLSDNEIHRLP 252
           L L + E+  L 
Sbjct: 118 LDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
           F  LE L      +  +  N  +LN+L+KL LSDN +      + +   NL  L++S N 
Sbjct: 41  FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN- 98

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD--FFRLNRLRKL 241
                     +   L  +  + L+   +L+ L L    + +L  +Y +  F  L +L  L
Sbjct: 99  ----------KIKDLSTI--EPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
           +   ++ EL +  +  N                 E +   F  LE L      +  +   
Sbjct: 14  RTPSDVKELVLDNSRSNEGKL-------------EGLTDEFEELEFLSTINVGLTSIA-- 58

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
             +  +LN+L+KL LSDN +      + +   NL  L++S N
Sbjct: 59  --NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 77/304 (25%)

Query: 23  EDTINSLCDGGDVTS--HTSRSWSRNASSIREYL----------------CHKTYLAAEE 64
            +  + L +   V +  + SR   +    +R+ L                  KT++A + 
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 65  AFNE-----------WFHYYNSTKPRGPPEINE------DAAYSERVLHESRLQQYEEVV 107
             +            W +  N   P    E+ +      D  ++ R  H S ++     +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 108 AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--NFFRLN-RL----RKLGLSD-- 158
                +L L SK    Y   L  L+L   ++++  K  N F L+ ++    R   ++D  
Sbjct: 231 QAELRRL-LKSK---PYENCL--LVLL--NVQN-AKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 159 NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
           +        + +    +  D  ++     ++Y+D R   LP   E +     +     L 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLP--REVL-----TTNPRRLS 331

Query: 219 --ANHIRDLP---KNY--LDFFRLNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNA 270
             A  IRD      N+  ++  +L  + +  L+  E    P E +  F+ L     S + 
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPSAHI 387

Query: 271 PSNV 274
           P+ +
Sbjct: 388 PTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 38/244 (15%), Positives = 67/244 (27%), Gaps = 78/244 (31%)

Query: 47  ASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR---------GPPEI----------NED 87
           A SIR+ L           ++ W H                  P E              
Sbjct: 334 AESIRDGLAT---------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 88  AAYSERVLHESRL--QQYEEVVAEWTSKLKLYS---KDVLRYFRSLEELLLDANHIRDLP 142
           A     +L  S +     +  V    +KL  YS   K       S+  + L+        
Sbjct: 385 AHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------- 434

Query: 143 KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP 202
                   L+    ++  +HR         ++V+            +  D      P   
Sbjct: 435 --------LKVKLENEYALHR---------SIVD-------HYNIPKTFDSDDLIPP--Y 468

Query: 203 EDVLRYFRS-----LEELLLDANHIRDLPKNYLDF-FRLNRLRKLGLSDNEIHRLPPEIQ 256
            D  +YF S     L+ +      +      +LDF F   ++R    + N    +   +Q
Sbjct: 469 LD--QYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 257 NFEN 260
             + 
Sbjct: 526 QLKF 529

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)

Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
           F +LE L L    +  +  N  +L +L+KL LS+N I      + +   NL  L++S N 
Sbjct: 48  FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN- 105

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD--FFRLNRLRKL 241
                     +   +  +  + L+    L+ L L    + +L  +Y +  F  L +L  L
Sbjct: 106 ----------KLKDISTL--EPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 123 RYFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
           R   ++ EL+LD     D  +         L  L L +  +  +   +     L +L++S
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELS 79

Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
            N               +    + +     +L  L L  N ++D+        +L  L+ 
Sbjct: 80  EN--------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKS 124

Query: 241 LGLSDNEIHRLP 252
           L L + E+  L 
Sbjct: 125 LDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 18/102 (17%)

Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
           +    + EL +     N                 E +   F +LE L L    +  +   
Sbjct: 21  RTPAAVRELVLDNCKSNDGKI-------------EGLTAEFVNLEFLSLINVGLISVS-- 65

Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
             +  +L +L+KL LS+N I      + +   NL  L++S N
Sbjct: 66  --NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 129 EELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
             L L++N ++ LP   F +L +L KL LS N+I  LP  +  F+ L +L +     N+ 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILYLHENK- 87

Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
                     L ++P  V      L+EL LD N ++ +P    D  RL  L+K+ L  N
Sbjct: 88  ----------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 134

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 50/198 (25%)

Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEI 168
            ++    SL EL L +N + D     L       + RLR L + +  I       L   +
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 169 QNFENLVELDVSRN-----GCNRQVEYVDKRHCSL-------PNVPED-------VLRYF 209
           +  E+L EL ++ N     G     E + +  C L        +           VL   
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 210 RSLEELLLDANHIRD---------LPKNYLDFFRLNRLRKLGLSDNEI-----HRLPPEI 255
           R L EL +  N + D         L +        + LR L L+D ++       L   +
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQP------GSVLRVLWLADCDVSDSSCSSLAATL 394

Query: 256 QNFENLVELDVSRNAPSN 273
               +L ELD+S N   +
Sbjct: 395 LANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 126 RSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELD 178
             ++ L +    + D    +    L + + + L D  +       +   ++    L EL+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 179 VSRNG---------------CNRQVEYVDKRHCSLPNVP----EDVLRYFRSLEELLLDA 219
           +  N                 + +++ +  ++C L           LR   +L+EL L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 220 NHIRDLPKNYLDFFRLN---RLRKLGLSDNEI-----HRLPPEIQNFENLVELDVSRNAP 271
           N + D     L    L+   RL KL L    +       L   ++   +  EL VS N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 272 SN 273
           + 
Sbjct: 183 NE 184

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 46/196 (23%)

Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEI 168
             LR   +L+EL L  N + D     L +       RL KL L    +       L   +
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 169 QNFENLVELDVSRNG---------------CNRQVEYVDKRHCSLPNVPE------DVLR 207
           +   +  EL VS N                   Q+E +    C +    +       ++ 
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVA 224

Query: 208 YFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEI-----HRLPPEIQN 257
              SL EL L +N + D     L    L     +RLR L + +  I       L   ++ 
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 258 FENLVELDVSRNAPSN 273
            E+L EL ++ N   +
Sbjct: 283 KESLKELSLAGNELGD 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.4
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.18
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.1

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=7.4e-27  Score=222.29  Aligned_cols=263  Identities=15%  Similarity=0.171  Sum_probs=152.2

Q ss_pred             hhhhhhhhccccccccc-----------------cCcccc--cc----ccCC--CCcccccccccccCCccccEEeeCCC
Q psy10538          4 LSKFFNKELSSHLFRGK-----------------ISEDTI--NS----LCDG--GDVTSHTSRSWSRNASSIREYLCHKT   58 (288)
Q Consensus         4 ~~~~~~~~ls~~~~~g~-----------------~p~~~~--~~----~~~~--~~~~~~~~~~~~~~l~~L~~l~~~~~   58 (288)
                      ++++...+|++|.+.|.                 +|..+.  ++    .++.  ..+... ....+.++++|+.++++.+
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCC
Confidence            45667788999999996                 888877  54    2222  222221 1256778999999999999


Q ss_pred             c-ccc--cc------------CccceEEecCCCCCCCCc--cccCCCCccEEEcCCCCcc-chhhHHHhhcCCceecchH
Q psy10538         59 Y-LAA--EE------------AFNEWFHYYNSTKPRGPP--EINEDAAYSERVLHESRLQ-QYEEVVAEWTSKLKLYSKD  120 (288)
Q Consensus        59 ~-l~~--l~------------~~~~~l~~~~~~~~~lp~--~l~~l~~l~~l~l~~n~l~-~l~~~~~~~~~~l~~~~~~  120 (288)
                      . +++  ++            .....+++.++.++.+|.  .++.+++|+++++++|++. .+|                
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----------------  347 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----------------  347 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----------------
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----------------
Confidence            8 764  11            234568888888889998  8999999999999999887 443                


Q ss_pred             HhhcCcCCcEEEcccCCCcccCcccccCCC-ccEEecCCCCCcccCccccCCC--CCcEEEccCCCCCC-----------
Q psy10538        121 VLRYFRSLEELLLDANHIRDLPKNFFRLNR-LRKLGLSDNEIHRLPPEIQNFE--NLVELDVSRNGCNR-----------  186 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~-----------  186 (288)
                      .+..+++|++|++++|+++.+|..+..+++ |+.|++++|.++.+|..+....  +|++|++++|.+.+           
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            234445555555555555555555555555 5555555555555554443322  45555555554431           


Q ss_pred             ------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC-------CCccEEEccCCCCccCCc
Q psy10538        187 ------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL-------NRLRKLGLSDNEIHRLPP  253 (288)
Q Consensus       187 ------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l-------~~L~~L~l~~n~l~~~p~  253 (288)
                            +|++|++++|.++.+|...+..+++|+.|++++|.++.+|...  +...       ++|+.|++++|+++.+|.
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  505 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS--LKDENENFKNTYLLTSIDLRFNKLTKLSD  505 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS--SEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred             ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH--hccccccccccCCccEEECcCCcCCccCh
Confidence                  4455555555555555554444455555555555555444431  1111       145555555555555554


Q ss_pred             ccc--CCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538        254 EIQ--NFENLVELDVSRNAPSNVDSSMVYLKLGR  285 (288)
Q Consensus       254 ~l~--~~~~L~~L~L~~N~l~~ip~~~~~l~~~~  285 (288)
                      .+.  .+++|+.|++++|+++.+|..+..++.++
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~  539 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK  539 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCC
T ss_pred             hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCC
Confidence            443  44555555555555555555444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.6e-26  Score=222.98  Aligned_cols=265  Identities=16%  Similarity=0.172  Sum_probs=193.9

Q ss_pred             hhhhhhhhcccccccc-----------------ccCcccc--cc----ccCC--CCcccccccccccCCccccEEeeCCC
Q psy10538          4 LSKFFNKELSSHLFRG-----------------KISEDTI--NS----LCDG--GDVTSHTSRSWSRNASSIREYLCHKT   58 (288)
Q Consensus         4 ~~~~~~~~ls~~~~~g-----------------~~p~~~~--~~----~~~~--~~~~~~~~~~~~~~l~~L~~l~~~~~   58 (288)
                      ++++...+|++|.+.|                 .+|+.+.  ++    .++.  ..+.... ...+.++++|+.++++.+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCC
Confidence            4566678899999999                 3887765  44    2222  1221111 256778999999999999


Q ss_pred             c-ccc--ccC-------------ccceEEecCCCCCCCCc--cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchH
Q psy10538         59 Y-LAA--EEA-------------FNEWFHYYNSTKPRGPP--EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKD  120 (288)
Q Consensus        59 ~-l~~--l~~-------------~~~~l~~~~~~~~~lp~--~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~  120 (288)
                      . +++  ++.             ....+.+.++.+..+|.  .++.+++|+.|++++|++..+|                
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----------------  589 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----------------  589 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----------------
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----------------
Confidence            7 654  111             34568888888888998  8999999999999998877442                


Q ss_pred             HhhcCcCCcEEEcccCCCcccCcccccCCC-ccEEecCCCCCcccCccccCCC--CCcEEEccCCCCCC-----------
Q psy10538        121 VLRYFRSLEELLLDANHIRDLPKNFFRLNR-LRKLGLSDNEIHRLPPEIQNFE--NLVELDVSRNGCNR-----------  186 (288)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~-----------  186 (288)
                      .|..+++|++|++++|+++.+|..+..+++ |+.|++++|.++.+|..+....  +|+.|++++|++.+           
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            366777888888888888888877777777 8888888888887777665554  38888888887642           


Q ss_pred             ----CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccC-------CCCccEEEccCCCCccCCccc
Q psy10538        187 ----QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR-------LNRLRKLGLSDNEIHRLPPEI  255 (288)
Q Consensus       187 ----~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~-------l~~L~~L~l~~n~l~~~p~~l  255 (288)
                          +|++|++++|.++.+|...+..+++|+.|++++|.++.+|...  +..       +++|+.|++++|+++.+|..+
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~--~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l  747 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS--LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF  747 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS--SSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH--hccccccccccCCccEEECCCCCCccchHHh
Confidence                5778888888888888777766778888888888888777652  221       227888888888888777777


Q ss_pred             c--CCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        256 Q--NFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       256 ~--~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      .  .+++|+.|++++|+++.+|..+..++.++.+
T Consensus       748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF  781 (876)
T ss_dssp             STTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEE
T ss_pred             hhccCCCcCEEEeCCCCCCccchhhhcCCCCCEE
Confidence            6  7778888888888887777777777766643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=9.1e-26  Score=196.91  Aligned_cols=192  Identities=19%  Similarity=0.208  Sum_probs=166.7

Q ss_pred             CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEec
Q psy10538         78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGL  156 (288)
Q Consensus        78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l  156 (288)
                      +.+|+.++.+++|++|++++|++.              ...+..|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        91 ~~~p~~l~~l~~L~~L~Ls~n~l~--------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           91 GPIPPAIAKLTQLHYLYITHTNVS--------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             SCCCGGGGGCTTCSEEEEEEECCE--------------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             ccCChhHhcCCCCCEEECcCCeeC--------------CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            357888888999999999888766              344566888999999999999999 78889999999999999


Q ss_pred             CCCCCc-ccCccccCCC-CCcEEEccCCCCCC---------CccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc
Q psy10538        157 SDNEIH-RLPPEIQNFE-NLVELDVSRNGCNR---------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL  225 (288)
Q Consensus       157 ~~n~l~-~l~~~l~~~~-~L~~L~l~~n~~~~---------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  225 (288)
                      ++|.++ .+|..+..++ .|++|++++|++++         .|++|++++|.++...+..+..+++|+.|++++|.++..
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            999998 7898898887 89999999997651         599999999999987888888899999999999999966


Q ss_pred             CCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538        226 PKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD  287 (288)
Q Consensus       226 ~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~  287 (288)
                      ++.   +..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. ..++.++.+
T Consensus       237 ~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          237 LGK---VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             GGG---CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             cCc---ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence            655   788999999999999999 88999999999999999999998 67765 666666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=3e-25  Score=215.53  Aligned_cols=205  Identities=24%  Similarity=0.352  Sum_probs=107.8

Q ss_pred             CCCccccCCCCccEEEcCCCCccc-hhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCccccc
Q psy10538         79 RGPPEINEDAAYSERVLHESRLQQ-YEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR  147 (288)
Q Consensus        79 ~lp~~l~~l~~l~~l~l~~n~l~~-l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~  147 (288)
                      .+|..++.+++|+++++++|++.. ++..+.         ...+.+....+..+..+++|++|++++|+++ .+|..+..
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  488 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN  488 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence            345555556666666666665542 221111         1233343344444555555555555555555 44555555


Q ss_pred             CCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCC-CCChHHH---------
Q psy10538        148 LNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLP-NVPEDVL---------  206 (288)
Q Consensus       148 l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~-~~~~~~~---------  206 (288)
                      +++|+.|++++|+++ .+|..++.+++|++|++++|+++          .+|++|++++|.++ .+|...+         
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            555555555555555 44555555555555555555544          24555555555544 2222211         


Q ss_pred             ------------------------------------------------------------hcCCCcceeecccCccc-cc
Q psy10538        207 ------------------------------------------------------------RYFRSLEELLLDANHIR-DL  225 (288)
Q Consensus       207 ------------------------------------------------------------~~~~~L~~L~l~~n~l~-~l  225 (288)
                                                                                  ..+++|+.|++++|+++ .+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                        11244555566666555 45


Q ss_pred             CCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccC
Q psy10538        226 PKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRK  286 (288)
Q Consensus       226 ~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~  286 (288)
                      |..   ++.+++|+.|++++|+++ .+|..++.+++|+.||+++|+++ .+|..+..++.++.
T Consensus       649 p~~---l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          649 PKE---IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             CGG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             CHH---HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            544   555566666666666655 55555666666666666666665 55555555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=7.7e-25  Score=212.61  Aligned_cols=254  Identities=22%  Similarity=0.247  Sum_probs=192.6

Q ss_pred             hhhhhhccccccccccCccccc--------cccCCCCcccccccccccCCccccEEeeCCCccccccC-------ccceE
Q psy10538          6 KFFNKELSSHLFRGKISEDTIN--------SLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-------FNEWF   70 (288)
Q Consensus         6 ~~~~~~ls~~~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l   70 (288)
                      .+...++++|.+.|.+|..+..        +.+....++.. ...++.++++|+.++++.+.+++...       ....+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence            5566789999999988876543        23332223222 12567788999999999988764211       11235


Q ss_pred             EecCCCCC-CCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccC
Q psy10538         71 HYYNSTKP-RGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRL  148 (288)
Q Consensus        71 ~~~~~~~~-~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l  148 (288)
                      .+.++.+. .+|..+..+++|+.+++++|++.              ...+..+..+++|++|++++|+++ .+|..++.+
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLT--------------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC--------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCccc--------------CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence            55555544 56777777777777777777666              334555777788888888888877 667777778


Q ss_pred             CCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC------------------------------------------
Q psy10538        149 NRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN------------------------------------------  185 (288)
Q Consensus       149 ~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~------------------------------------------  185 (288)
                      ++|++|++++|.++ .+|..+..+++|++|++++|.++                                          
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            88888888888877 66777777788888888777543                                          


Q ss_pred             --------------------------------------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccC
Q psy10538        186 --------------------------------------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLP  226 (288)
Q Consensus       186 --------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~  226 (288)
                                                            .++++|++++|+++...+..+..+++|+.|++++|.++ .+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                                  25789999999999655555677999999999999999 788


Q ss_pred             CccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCcc
Q psy10538        227 KNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSS  277 (288)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~  277 (288)
                      ..   ++.+++|+.|++++|+++ .+|..++.+++|+.|++++|+++ .||..
T Consensus       674 ~~---l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          674 DE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GG---GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             hH---HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            87   899999999999999999 89999999999999999999998 67754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=4.6e-25  Score=209.93  Aligned_cols=269  Identities=15%  Similarity=0.156  Sum_probs=184.8

Q ss_pred             hhhhhhhhccccccccccCcccccc----ccCC--CC-ccc--cccccccc------CCccccEEeeCCCccccccC---
Q psy10538          4 LSKFFNKELSSHLFRGKISEDTINS----LCDG--GD-VTS--HTSRSWSR------NASSIREYLCHKTYLAAEEA---   65 (288)
Q Consensus         4 ~~~~~~~~ls~~~~~g~~p~~~~~~----~~~~--~~-~~~--~~~~~~~~------~l~~L~~l~~~~~~l~~l~~---   65 (288)
                      ++++...++++|.+.|.+|..+.++    .++.  .. ++.  .+  ..+.      .+++|+.++++.+.++.++.   
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp--~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~  325 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGYNNLKTFPVETS  325 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH--HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch--HHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence            4555667777888888888665544    2222  22 221  11  1122      23666666666666654332   


Q ss_pred             -----ccceEEecCCCCC-CCCccccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecchHHhhc--CcC
Q psy10538         66 -----FNEWFHYYNSTKP-RGPPEINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYSKDVLRY--FRS  127 (288)
Q Consensus        66 -----~~~~l~~~~~~~~-~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~~~~~~~--l~~  127 (288)
                           ....+++.++.+. .+| .++.+++|++|++++|++..+|..+.          ...+.+..++. .+..  +++
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~  403 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSV  403 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSC
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCc
Confidence                 1123555555555 666 56666666777777666665443211          11233333332 3333  347


Q ss_pred             CcEEEcccCCCc-ccCcccc-------cCCCccEEecCCCCCcccCccc-cCCCCCcEEEccCCCCC----------C--
Q psy10538        128 LEELLLDANHIR-DLPKNFF-------RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN----------R--  186 (288)
Q Consensus       128 L~~L~l~~n~i~-~lp~~~~-------~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~~~----------~--  186 (288)
                      |++|++++|.++ .+|..+.       .+++|+.|++++|.++.+|..+ ..+++|++|++++|+++          .  
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            888888888887 4566666       6778999999999988888764 45788999999999876          1  


Q ss_pred             -----CccEEEccCCCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEcc------CCCCc-cCCc
Q psy10538        187 -----QVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS------DNEIH-RLPP  253 (288)
Q Consensus       187 -----~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~------~n~l~-~~p~  253 (288)
                           +|++|++++|+++.+|...+ ..+++|+.|++++|.++.+|..   ++.+++|+.|+++      +|++. .+|.
T Consensus       484 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ---PLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             CTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG---GGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             ccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh---hhcCCCCCEEECCCCcccccCcccccChH
Confidence                 78999999999998887765 3588999999999999998887   7889999999995      45555 7888


Q ss_pred             cccCCCCCcEEECcCCCCCCcCcccc
Q psy10538        254 EIQNFENLVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       254 ~l~~~~~L~~L~L~~N~l~~ip~~~~  279 (288)
                      .+..+++|+.|++++|+++.+|..+.
T Consensus       561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~  586 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDIRKVNEKIT  586 (636)
T ss_dssp             TGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred             HHhcCCCCCEEECCCCcCCccCHhHh
Confidence            89999999999999999998988765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.6e-24  Score=190.18  Aligned_cols=198  Identities=23%  Similarity=0.297  Sum_probs=160.8

Q ss_pred             EecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCC
Q psy10538         71 HYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNR  150 (288)
Q Consensus        71 ~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~  150 (288)
                      ++.++.++.+|+.++.+++|++|++++|.+..+|               ..+..+++|++|++++|.++.+|..+..+++
T Consensus        87 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp---------------~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~  151 (328)
T 4fcg_A           87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP---------------DTMQQFAGLETLTLARNPLRALPASIASLNR  151 (328)
T ss_dssp             EEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC---------------SCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred             EccCCCchhcChhhhhCCCCCEEECCCCCccchh---------------HHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence            3333444558888888889999999988777432               3356788888899998888888888888888


Q ss_pred             ccEEecCCCCCc-ccCccccC---------CCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCC
Q psy10538        151 LRKLGLSDNEIH-RLPPEIQN---------FENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRS  211 (288)
Q Consensus       151 L~~L~l~~n~l~-~l~~~l~~---------~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~  211 (288)
                      |++|++++|.+. .+|..+..         +++|++|++++|+++         .+|++|++++|.++.+++. +..+++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~  230 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPK  230 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTT
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCC
Confidence            899998886544 66766543         888888888888765         3788999999999998876 556899


Q ss_pred             cceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538        212 LEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD  287 (288)
Q Consensus       212 L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~  287 (288)
                      |+.|++++|.+. .+|..   ++.+++|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|+.++.++.++.+
T Consensus       231 L~~L~Ls~n~~~~~~p~~---~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPI---FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             CCEEECTTCTTCCBCCCC---TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CCEEECcCCcchhhhHHH---hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            999999998776 67776   889999999999998866 88989999999999999998865 899999999887643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=9.1e-24  Score=194.20  Aligned_cols=263  Identities=17%  Similarity=0.171  Sum_probs=205.1

Q ss_pred             cCccccccccCCCCcccccccccccCCccccEEeeCCCccccccC-------ccceEEecCCCCCCCCcc-ccCCCCccE
Q psy10538         21 ISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPPE-INEDAAYSE   92 (288)
Q Consensus        21 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~~-l~~l~~l~~   92 (288)
                      +|..+..+.+....++.... ..+.++++|+.++++.+.++....       ..+.+++.++.++.+|+. +..+++|++
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            44455555555555544432 456778888888888887766421       123477777777888864 577888999


Q ss_pred             EEcCCCCccchhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCC
Q psy10538         93 RVLHESRLQQYEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEI  161 (288)
Q Consensus        93 l~l~~n~l~~l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l  161 (288)
                      |++++|++..+...          +....+.+..+.+..|..+++|++|++++|+++.+|. .+..+++|+.|++++|.+
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            99999988765322          2233566677777788889999999999999887765 577888999999999998


Q ss_pred             cccCc-cccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccc
Q psy10538        162 HRLPP-EIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL  230 (288)
Q Consensus       162 ~~l~~-~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~  230 (288)
                      ..++. .+..+++|+.|++++|.+.          .+|++|++++|+++.++...+..+++|+.|++++|.++.++... 
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-  267 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM-  267 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS-
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh-
Confidence            87654 5788889999999987644          27999999999999999888888999999999999999887653 


Q ss_pred             cccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCccc-cccccccC
Q psy10538        231 DFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSSM-VYLKLGRK  286 (288)
Q Consensus       231 ~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~~-~~l~~~~~  286 (288)
                       +..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++.+|... ..++.++.
T Consensus       268 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          268 -LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             -CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             -ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence             78899999999999999955 667899999999999999999888754 56666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=5.5e-24  Score=183.66  Aligned_cols=193  Identities=26%  Similarity=0.280  Sum_probs=164.8

Q ss_pred             ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      +.++++++.++|+.+.++.                 +|+.+.  +.++.|++++|++.              .+.+..|.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-----------------ip~~~~--~~l~~L~L~~N~l~--------------~~~~~~~~   52 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-----------------LPPDLP--KDTTILHLSENLLY--------------TFSLATLM   52 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-----------------CCSCCC--TTCCEEECTTSCCS--------------EEEGGGGT
T ss_pred             ccccCCccEEECCCCCCCc-----------------CCCCCC--CCCCEEEcCCCcCC--------------ccCHHHhh
Confidence            4567788888888888755                 666553  57889999998776              45566788


Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEc
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDK  193 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l  193 (288)
                      .+++|++|++++|.|+.++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|+++          .+|++|++
T Consensus        53 ~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             TCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             cCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence            889999999999999887654 6788999999999999988888888889999999999766          37899999


Q ss_pred             cCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC
Q psy10538        194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       194 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      ++|.++.+++..+..+++|+.|++++|+++.+|...  +..+++|+.|++++|+++.+|..+...++|+.+++++|++.
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcCCccCHHH--hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            999999999988888999999999999999998863  67899999999999999999998888889999999999886

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=8.1e-24  Score=185.81  Aligned_cols=211  Identities=19%  Similarity=0.298  Sum_probs=130.2

Q ss_pred             cccEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         49 SIREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        49 ~L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      .++.+.|+.+.++.++.    ....+++.++.+..+++ .+..+++|+++++++|++..              +.+..|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~   99 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--------------IHEKAFS   99 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--------------ECGGGST
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc--------------cCHhHhh
Confidence            45566666555544322    12345555555555543 56677777777777766653              3334444


Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCC--------------------
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN--------------------  182 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n--------------------  182 (288)
                      .+++|++|++++|.++.+|..+.  ++|++|++++|.++.++.. +..+++|++|++++|                    
T Consensus       100 ~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L  177 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL  177 (332)
T ss_dssp             TCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred             CcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence            45555555555555554444332  4444445544444444332 344444444444444                    


Q ss_pred             -----CCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc
Q psy10538        183 -----GCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR  250 (288)
Q Consensus       183 -----~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~  250 (288)
                           +++       .+|++|++++|.++.+++..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+++.
T Consensus       178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~  255 (332)
T 2ft3_A          178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLSR  255 (332)
T ss_dssp             BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCCB
T ss_pred             ECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCee
Confidence                 433       36777777777777777666666788888888888888776532  6777888888888888888


Q ss_pred             CCccccCCCCCcEEECcCCCCCCcCcc
Q psy10538        251 LPPEIQNFENLVELDVSRNAPSNVDSS  277 (288)
Q Consensus       251 ~p~~l~~~~~L~~L~L~~N~l~~ip~~  277 (288)
                      +|..+..+++|+.|++++|+++.+|..
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             cChhhhcCccCCEEECCCCCCCccChh
Confidence            887788888888888888888877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=3.3e-23  Score=181.73  Aligned_cols=207  Identities=15%  Similarity=0.218  Sum_probs=151.9

Q ss_pred             ccCCccccEEeeCCCccccccCccceEEecCCCCCCC-CccccCCCCccEEEcCCCCccchhhHH-------HhhcCCce
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQYEEVV-------AEWTSKLK  115 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l~~~~-------~~~~~~l~  115 (288)
                      +.+++.|+.++++.+.++.                 + |..+..+++|++|++++|+++.++...       ....+.+.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~  134 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISK-----------------ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT  134 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCC-----------------BCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEECCCCcCCe-----------------eCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccc
Confidence            4455555555555555543                 4 456677777777777777777655332       12345556


Q ss_pred             ecchHHhhcCcCCcEEEcccCCCcc---cCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538        116 LYSKDVLRYFRSLEELLLDANHIRD---LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------  185 (288)
Q Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------  185 (288)
                      .+++..|..+++|++|++++|.++.   .+..+..+++|+.|++++|.++.+|..+.  ++|++|++++|+++       
T Consensus       135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~  212 (330)
T 1xku_A          135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASL  212 (330)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred             ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHh
Confidence            7777778888888888888888863   35577778888888888888888876653  67888888888765       


Q ss_pred             ---CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-cc-----
Q psy10538        186 ---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQ-----  256 (288)
Q Consensus       186 ---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~-----  256 (288)
                         .+|++|++++|.++.+++..+..+++|+.|++++|.++.+|..   +..+++|++|++++|+++.++.. +.     
T Consensus       213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~  289 (330)
T 1xku_A          213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG---LADHKYIQVVYLHNNNISAIGSNDFCPPGYN  289 (330)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT---TTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh---hccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence               3788888888888887776677788888888888888888877   77888888888888888877653 32     


Q ss_pred             -CCCCCcEEECcCCCCC
Q psy10538        257 -NFENLVELDVSRNAPS  272 (288)
Q Consensus       257 -~~~~L~~L~L~~N~l~  272 (288)
                       ..+.++.+++++|++.
T Consensus       290 ~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          290 TKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             TTSCCCSEEECCSSSSC
T ss_pred             cccccccceEeecCccc
Confidence             2367888888888886

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=6.8e-24  Score=193.70  Aligned_cols=215  Identities=17%  Similarity=0.200  Sum_probs=137.6

Q ss_pred             EEecCCCCCCC-CccccCCCCccEEEcCCCCccch-hhH-----------HHhhcCCceecchHH-hhcCcCCcEEEccc
Q psy10538         70 FHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQY-EEV-----------VAEWTSKLKLYSKDV-LRYFRSLEELLLDA  135 (288)
Q Consensus        70 l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l-~~~-----------~~~~~~~l~~~~~~~-~~~l~~L~~L~l~~  135 (288)
                      +++.++.+..+ |..++.+++|++|++++|++... +..           +....+.+..+.+.. +..+++|++|++++
T Consensus        84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A           84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred             EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence            44444444444 55677778888888888877641 111           112234444554433 67778888888888


Q ss_pred             CCCccc-CcccccC----------------------------------CCccEEecCCCCCcc-cCcccc----------
Q psy10538        136 NHIRDL-PKNFFRL----------------------------------NRLRKLGLSDNEIHR-LPPEIQ----------  169 (288)
Q Consensus       136 n~i~~l-p~~~~~l----------------------------------~~L~~L~l~~n~l~~-l~~~l~----------  169 (288)
                      |.++.+ |..+..+                                  ++|+.|++++|.++. .|..+.          
T Consensus       164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~  243 (455)
T 3v47_A          164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS  243 (455)
T ss_dssp             CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred             CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence            877744 3333322                                  456666666665541 121111          


Q ss_pred             -----------------------------CCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCC
Q psy10538        170 -----------------------------NFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFR  210 (288)
Q Consensus       170 -----------------------------~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~  210 (288)
                                                   ..++|+++++++|.+.          .+|++|++++|.++.+++..+..++
T Consensus       244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  323 (455)
T 3v47_A          244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT  323 (455)
T ss_dssp             EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence                                         1145666777666654          3678888888888877776676778


Q ss_pred             CcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCccc-cccccccC
Q psy10538        211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSSM-VYLKLGRK  286 (288)
Q Consensus       211 ~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~~-~~l~~~~~  286 (288)
                      +|+.|++++|.++.++...  ++.+++|+.|++++|+++.+ |..+.++++|++|++++|+++.+|... ..++.++.
T Consensus       324 ~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          324 HLLKLNLSQNFLGSIDSRM--FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TCCEEECCSSCCCEECGGG--GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCEEECCCCccCCcChhH--hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            8888888888887665432  67788888888888888855 566788888888888888888777644 56666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=1.8e-23  Score=183.37  Aligned_cols=228  Identities=16%  Similarity=0.202  Sum_probs=166.4

Q ss_pred             CccccEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchh-hHH---------Hhhc
Q psy10538         47 ASSIREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYE-EVV---------AEWT  111 (288)
Q Consensus        47 l~~L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~-~~~---------~~~~  111 (288)
                      .+.++.+.|+.+.++.++.    ....+++.++.++.+|+ .+..+++|++|++++|++..+. ..+         ....
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            3467788888777665432    23457777888888876 6889999999999999888652 111         1123


Q ss_pred             CCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCc---ccCccccCCCCCcEEEccCCCCC--
Q psy10538        112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIH---RLPPEIQNFENLVELDVSRNGCN--  185 (288)
Q Consensus       112 ~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~---~l~~~l~~~~~L~~L~l~~n~~~--  185 (288)
                      +.+..++...+   ++|++|++++|.++.++. .+..+++|+.|++++|.+.   ..+..+..+++|++|++++|+++  
T Consensus       110 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            34444433322   456666666666665543 4566777777777777765   23455677788888888888765  


Q ss_pred             -----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCC
Q psy10538        186 -----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN  260 (288)
Q Consensus       186 -----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~  260 (288)
                           .+|++|++++|.++.+++..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+++.+|..+..+++
T Consensus       187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~lp~~l~~l~~  264 (330)
T 1xku_A          187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGGLADHKY  264 (330)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCcCccCChhhccCCC
Confidence                 47888999999888887777777889999999999998776532  77888999999999999999988888999


Q ss_pred             CcEEECcCCCCCCcCcccc
Q psy10538        261 LVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       261 L~~L~L~~N~l~~ip~~~~  279 (288)
                      |+.|++++|+++.+|....
T Consensus       265 L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          265 IQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CCEEECCSSCCCCCCTTSS
T ss_pred             cCEEECCCCcCCccChhhc
Confidence            9999999999998876544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.9e-23  Score=187.38  Aligned_cols=221  Identities=19%  Similarity=0.222  Sum_probs=101.8

Q ss_pred             ccCCccccEEeeCCCccccccC-------ccceEEecCCCCCCCCcc-ccCCCCccEEEcCCCCccchhhHHHhhcCCce
Q psy10538         44 SRNASSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPPE-INEDAAYSERVLHESRLQQYEEVVAEWTSKLK  115 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~~-l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~  115 (288)
                      +.+++.|+.++++.+.++....       ....+++.++.+..+|+. ++.+++|++|++++|++..+            
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------------  132 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL------------  132 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC------------
Confidence            3445555555555555544221       012244444444444432 45556666666666555533            


Q ss_pred             ecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCccccCCC-------------------CCc
Q psy10538        116 LYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPEIQNFE-------------------NLV  175 (288)
Q Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~-------------------~L~  175 (288)
                        ++..|..+++|++|++++|+++.++ ..+..+++|++|++++|.++.++  +..++                   .|+
T Consensus       133 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~  208 (390)
T 3o6n_A          133 --PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVE  208 (390)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred             --CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcce
Confidence              3333444444444444444444332 23444444444444444444332  11122                   233


Q ss_pred             EEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc-CCccccccCCCCccEEEccCCC
Q psy10538        176 ELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       176 ~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                      +|++++|.+.       .+|++|++++|.++..+  .+..+++|+.|++++|.++.+ |..   +..+++|+.|++++|+
T Consensus       209 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~  283 (390)
T 3o6n_A          209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISNNR  283 (390)
T ss_dssp             EEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGG---GTTCSSCCEEECCSSC
T ss_pred             EEECCCCeeeeccccccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhH---ccccccCCEEECCCCc
Confidence            3333333322       14455555555544431  233445555555555555543 222   4455555555555555


Q ss_pred             CccCCccccCCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538        248 IHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR  285 (288)
Q Consensus       248 l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~  285 (288)
                      ++.+|..+..+++|+.|++++|+++.+|..+..++.++
T Consensus       284 l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  321 (390)
T ss_dssp             CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             CcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence            55554444445555555555555555555444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=7e-24  Score=206.92  Aligned_cols=272  Identities=15%  Similarity=0.170  Sum_probs=192.9

Q ss_pred             hhhhhhhhhccccccccccCcccccc----ccCC--CC-ccc--ccc-c---c-cccCCccccEEeeCCCccccccC---
Q psy10538          3 MLSKFFNKELSSHLFRGKISEDTINS----LCDG--GD-VTS--HTS-R---S-WSRNASSIREYLCHKTYLAAEEA---   65 (288)
Q Consensus         3 ~~~~~~~~~ls~~~~~g~~p~~~~~~----~~~~--~~-~~~--~~~-~---~-~~~~l~~L~~l~~~~~~l~~l~~---   65 (288)
                      -++.+-.++|++|.+.|.+|..+.++    .++.  .. ++.  .+. .   . ....+++|+.++++.+.++.++.   
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            35667778888999999999776655    2222  22 322  111 0   0 12344588888888888775443   


Q ss_pred             -----ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecchHHhhcCc--CC
Q psy10538         66 -----FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYSKDVLRYFR--SL  128 (288)
Q Consensus        66 -----~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~~~~~~~l~--~L  128 (288)
                           ....+++.++.++.+| .++.+++|+.|++++|++..+|..+.          ...|.+..++ ..+..++  +|
T Consensus       569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L  646 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVM  646 (876)
T ss_dssp             HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCE
T ss_pred             hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCC
Confidence                 1234777778777888 78888888888888888876654322          1223344333 3344333  37


Q ss_pred             cEEEcccCCCccc-C---cccc--cCCCccEEecCCCCCcccCccc-cCCCCCcEEEccCCCCC-------C--------
Q psy10538        129 EELLLDANHIRDL-P---KNFF--RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN-------R--------  186 (288)
Q Consensus       129 ~~L~l~~n~i~~l-p---~~~~--~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~~~-------~--------  186 (288)
                      +.|++++|+++.. |   ..+.  .+++|+.|++++|.++.+|..+ ..+++|+.|++++|+++       .        
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            8888888887632 2   1222  3457888888888888888775 47788999999988765       1        


Q ss_pred             --CccEEEccCCCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEccC------CCCc-cCCcccc
Q psy10538        187 --QVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD------NEIH-RLPPEIQ  256 (288)
Q Consensus       187 --~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~------n~l~-~~p~~l~  256 (288)
                        +|++|+|++|+++.+|...+ ..+++|+.|++++|.++.+|..   ++.+++|+.|++++      |++. .+|..+.
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~---l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT  803 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG---GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchh---hhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence              78899999999998887665 3588999999999999988887   78889999999976      5555 7888888


Q ss_pred             CCCCCcEEECcCCCCCCcCcccc
Q psy10538        257 NFENLVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       257 ~~~~L~~L~L~~N~l~~ip~~~~  279 (288)
                      .+++|+.|++++|+++.||..+.
T Consensus       804 ~L~~L~~L~Ls~N~L~~Ip~~l~  826 (876)
T 4ecn_A          804 TCPSLIQLQIGSNDIRKVDEKLT  826 (876)
T ss_dssp             GCSSCCEEECCSSCCCBCCSCCC
T ss_pred             cCCCCCEEECCCCCCCccCHhhc
Confidence            89999999999999988888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=8e-24  Score=196.54  Aligned_cols=276  Identities=14%  Similarity=0.110  Sum_probs=174.3

Q ss_pred             hhhhhhhccccccccccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccCc----cceEEecC
Q psy10538          5 SKFFNKELSSHLFRGKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF----NEWFHYYN   74 (288)
Q Consensus         5 ~~~~~~~ls~~~~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~----~~~l~~~~   74 (288)
                      ++....++++|.+.+..|..+..+      .+....++... ...+.++++|+.++++.+.++.++..    .+.+++.+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~   99 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF   99 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCS
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCceeecCccccCCccEEeccC
Confidence            345566777787777655443332      33333333332 24567788888888888888775532    23477777


Q ss_pred             CCCCC--CCccccCCCCccEEEcCCCCccchh-----hH----HHhhcCCc--eecchHHh-------------------
Q psy10538         75 STKPR--GPPEINEDAAYSERVLHESRLQQYE-----EV----VAEWTSKL--KLYSKDVL-------------------  122 (288)
Q Consensus        75 ~~~~~--lp~~l~~l~~l~~l~l~~n~l~~l~-----~~----~~~~~~~l--~~~~~~~~-------------------  122 (288)
                      +.+..  +|..++.+++|++|++++|++....     ..    +....+.+  ....+..+                   
T Consensus       100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~  179 (520)
T 2z7x_B          100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH  179 (520)
T ss_dssp             SCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred             CccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence            77765  5678888889999998888876311     00    00000111  00000001                   


Q ss_pred             -------------------------------------hc---------------------------CcCCcEEEcccCCC
Q psy10538        123 -------------------------------------RY---------------------------FRSLEELLLDANHI  138 (288)
Q Consensus       123 -------------------------------------~~---------------------------l~~L~~L~l~~n~i  138 (288)
                                                           ..                           .++|++|++++|++
T Consensus       180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (520)
T 2z7x_B          180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL  259 (520)
T ss_dssp             CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred             hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence                                                 11                           12566666666666


Q ss_pred             c-ccCccc-----------------------------------------------------ccCCCccEEecCCCCCcc-
Q psy10538        139 R-DLPKNF-----------------------------------------------------FRLNRLRKLGLSDNEIHR-  163 (288)
Q Consensus       139 ~-~lp~~~-----------------------------------------------------~~l~~L~~L~l~~n~l~~-  163 (288)
                      + .+|..+                                                     ..+++|++|++++|.++. 
T Consensus       260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred             cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence            5 455443                                                     345667777777777764 


Q ss_pred             cCccccCCCCCcEEEccCCCCC------------CCccEEEccCCCCCC-CChHHHhcCCCcceeecccCccc-ccCCcc
Q psy10538        164 LPPEIQNFENLVELDVSRNGCN------------RQVEYVDKRHCSLPN-VPEDVLRYFRSLEELLLDANHIR-DLPKNY  229 (288)
Q Consensus       164 l~~~l~~~~~L~~L~l~~n~~~------------~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~  229 (288)
                      +|..+..+++|++|++++|+++            .+|++|++++|.++. +|...+..+++|+.|++++|.++ .+|.. 
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-  418 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-  418 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-
Confidence            5666667777777777777665            267777777777776 66655556677777777777775 33333 


Q ss_pred             ccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538        230 LDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK  286 (288)
Q Consensus       230 ~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~  286 (288)
                        +.  ++|+.|++++|+++.+|..+..+++|+.|++++|+++.+|.. +..++.++.
T Consensus       419 --l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          419 --LP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK  472 (520)
T ss_dssp             --CC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             --hc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccE
Confidence              22  678888888888888888777888888888888888888886 666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=2.1e-23  Score=187.11  Aligned_cols=255  Identities=14%  Similarity=0.106  Sum_probs=188.7

Q ss_pred             hhhhhccccccccccCccc-------cccccCCCCcccccccccccCCccccEEeeCCCccccccCc-------cceEEe
Q psy10538          7 FFNKELSSHLFRGKISEDT-------INSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF-------NEWFHY   72 (288)
Q Consensus         7 ~~~~~ls~~~~~g~~p~~~-------~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~-------~~~l~~   72 (288)
                      .-..+++.+.+.. +|...       ..+.+....++..+ ...+.+++.|+.++++.+.++.....       .+.+++
T Consensus        47 l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           47 QKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            3345566665544 45432       22233333343333 24567889999999998888765321       245888


Q ss_pred             cCCCCCCCCccc-cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccC---
Q psy10538         73 YNSTKPRGPPEI-NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRL---  148 (288)
Q Consensus        73 ~~~~~~~lp~~l-~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l---  148 (288)
                      .++.++.+|+.+ ..+++|++|++++|++..              +++..+..+++|++|++++|+++.++  +..+   
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L  188 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--------------IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL  188 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCc--------------cChhhccCCCCCCEEECCCCcCCccc--ccccccc
Confidence            888889999875 789999999999988773              44555666777777777777776553  2223   


Q ss_pred             ----------------CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChH
Q psy10538        149 ----------------NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPED  204 (288)
Q Consensus       149 ----------------~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~  204 (288)
                                      +.++.|++++|.++.+|..  ..++|++|++++|.++        ++|++|++++|.++.+++.
T Consensus       189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             ceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh
Confidence                            3455666666666655432  2468999999999887        4899999999999988777


Q ss_pred             HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccc
Q psy10538        205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG  284 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~  284 (288)
                      .+..+++|+.|++++|.++.+|..   +..+++|+.|++++|+++.+|..+..+++|+.|++++|+++++|  +..++.+
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L  341 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVALNLY---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL  341 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCEEECS---SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred             HccccccCCEEECCCCcCcccCcc---cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccC
Confidence            788899999999999999999886   77899999999999999999988888999999999999999886  4555555


Q ss_pred             cC
Q psy10538        285 RK  286 (288)
Q Consensus       285 ~~  286 (288)
                      +.
T Consensus       342 ~~  343 (390)
T 3o6n_A          342 KN  343 (390)
T ss_dssp             SE
T ss_pred             CE
Confidence            44

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=2.6e-23  Score=178.72  Aligned_cols=205  Identities=23%  Similarity=0.298  Sum_probs=129.6

Q ss_pred             cEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538         51 REYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF  125 (288)
Q Consensus        51 ~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l  125 (288)
                      +.++|+...++.++.    ....+.+.++.++.+|+ .+..+++|+++++++|.+.              .+.+..|..+
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------~~~~~~~~~l   79 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------RIDAAAFTGL   79 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--------------eeCHhhcCCc
Confidence            456666666554321    12335555555555553 3555666666666665554              4445556667


Q ss_pred             cCCcEEEcccCC-Cccc-CcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEE
Q psy10538        126 RSLEELLLDANH-IRDL-PKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVD  192 (288)
Q Consensus       126 ~~L~~L~l~~n~-i~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~  192 (288)
                      ++|++|++++|. ++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++          .+|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            777777777776 6655 44666677777777777777755 344666677777777777654          2667777


Q ss_pred             ccCCCCCCCChHHHhcCCCcceeecccCccccc-CCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCC
Q psy10538        193 KRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNA  270 (288)
Q Consensus       193 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~  270 (288)
                      +++|+++.+++..+..+++|+.|++++|.++.+ |..   +..+++|+.|++++|+++.+|. .+..+++|+.|++++|+
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA---FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhH---ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            777777766666566667777777777777655 333   6666777777777777776654 36666777777777776


Q ss_pred             CC
Q psy10538        271 PS  272 (288)
Q Consensus       271 l~  272 (288)
                      +.
T Consensus       237 ~~  238 (285)
T 1ozn_A          237 WV  238 (285)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.5e-23  Score=198.19  Aligned_cols=99  Identities=13%  Similarity=0.037  Sum_probs=61.1

Q ss_pred             hhhhhhhhccccccccccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccC-------ccceE
Q psy10538          4 LSKFFNKELSSHLFRGKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-------FNEWF   70 (288)
Q Consensus         4 ~~~~~~~~ls~~~~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l   70 (288)
                      ++++...++++|.+.+..|..+..+      .++...++... ...+.++++|+.++++.+.++.+..       ..+.+
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            3455556777777776655443332      22222233332 2456777788888887777755431       11336


Q ss_pred             EecCCCCC--CCCccccCCCCccEEEcCCCCccch
Q psy10538         71 HYYNSTKP--RGPPEINEDAAYSERVLHESRLQQY  103 (288)
Q Consensus        71 ~~~~~~~~--~lp~~l~~l~~l~~l~l~~n~l~~l  103 (288)
                      ++.++.+.  .+|..++.+++|++|++++|++..+
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            67777766  4678888888888888888887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=1.5e-23  Score=196.73  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             ccCCCccEEecCCCCCcc-cCccccCCCCCcEEEccCCCCC------------CCccEEEccCCCCCC-CChHHHhcCCC
Q psy10538        146 FRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGCN------------RQVEYVDKRHCSLPN-VPEDVLRYFRS  211 (288)
Q Consensus       146 ~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~~~------------~~L~~L~l~~n~l~~-~~~~~~~~~~~  211 (288)
                      ..+++|++|++++|.++. +|..+..+++|++|++++|+++            .+|++|++++|.++. +|...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            445677777777777774 4666677777777777777665            367777777777776 66666666677


Q ss_pred             cceeecccCccc-ccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcc-ccccccccCC
Q psy10538        212 LEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRKD  287 (288)
Q Consensus       212 L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~~  287 (288)
                      |+.|++++|.++ .+|..   +.  ++|+.|++++|+++.+|..+..+++|+.|++++|+++.+|.. +..++.++.+
T Consensus       430 L~~L~l~~n~l~~~~~~~---l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRC---LP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CCEEECCSSCCCGGGGSS---CC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred             CCEEECCCCCCCcchhhh---hc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence            777777777775 33332   21  678888888888888888777888888888888888888887 6666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=7.2e-23  Score=193.42  Aligned_cols=168  Identities=25%  Similarity=0.287  Sum_probs=104.7

Q ss_pred             ecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC---------
Q psy10538        116 LYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN---------  185 (288)
Q Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~---------  185 (288)
                      .+++..|..+++|++|++++|.++++|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.         
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            3444556777888888888888888888787888888888888887765 445667777777777777543         


Q ss_pred             --CCccEEEccCCCCCCCC--hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-Cc-cccCCC
Q psy10538        186 --RQVEYVDKRHCSLPNVP--EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PP-EIQNFE  259 (288)
Q Consensus       186 --~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~-~l~~~~  259 (288)
                        .+|++|++++|.++...  +..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+++.. |. .+..++
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence              25677777777766553  334455666666666666666443321  55556666666666665522 22 255555


Q ss_pred             CCcEEECcCCCCCC-cCcccccccccc
Q psy10538        260 NLVELDVSRNAPSN-VDSSMVYLKLGR  285 (288)
Q Consensus       260 ~L~~L~L~~N~l~~-ip~~~~~l~~~~  285 (288)
                      +|+.|++++|.++. .|..+..++.++
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~  452 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQ  452 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCC
Confidence            56666665555553 233344444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.5e-22  Score=178.42  Aligned_cols=232  Identities=18%  Similarity=0.231  Sum_probs=174.7

Q ss_pred             ccCCccccEEeeCCCccccccCcc-----ceEEecCCCCCCCCccccCCCCccEEEcCCCC-ccchhhH--------HHh
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESR-LQQYEEV--------VAE  109 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~-l~~l~~~--------~~~  109 (288)
                      +.++++|+.++++.+.++.++...     +.+++.++.+..+|+ +..+++|+.+++++|. +..++..        +..
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l  162 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV  162 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence            667777888888777766644222     236666677676666 7777778888887773 3322221        111


Q ss_pred             hcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----
Q psy10538        110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----  185 (288)
Q Consensus       110 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----  185 (288)
                      ..+.+..+++  +..+++|++|++++|.++.++. +..+++|+.+++++|.+..++. +..+++|++|++++|+++    
T Consensus       163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred             cCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc
Confidence            2334444433  7788889999999998887765 7778889999999998887655 778889999999999876    


Q ss_pred             ----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCC
Q psy10538        186 ----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFEN  260 (288)
Q Consensus       186 ----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~  260 (288)
                          .+|++|++++|.++.++  .+..+++|+.|++++|.++.++.    +..+++|+.|++++|+++.. |..+..+++
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISV----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCChh----hcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence                48899999999998874  35668899999999999998864    78899999999999999844 456889999


Q ss_pred             CcEEECcCCCCCCcCccccccccccCC
Q psy10538        261 LVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       261 L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      |+.|++++|+++.+++ +..++.++.+
T Consensus       313 L~~L~L~~n~l~~~~~-~~~l~~L~~L  338 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP-LASLSKMDSA  338 (347)
T ss_dssp             CSEEECCSSSCCCCGG-GGGCTTCSEE
T ss_pred             CCEEEccCCccccccC-hhhhhcccee
Confidence            9999999999998877 7777776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1e-23  Score=183.76  Aligned_cols=192  Identities=20%  Similarity=0.255  Sum_probs=147.3

Q ss_pred             CCccccEEeeCCCccccccCccceEEecCCCCCCCCccc--cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         46 NASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEI--NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        46 ~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l--~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      +++.|+.++++.+.+++                .+|..+  ..+++|++|++++|++...+.               .+.
T Consensus        93 ~l~~L~~L~L~~n~l~~----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~  141 (312)
T 1wwl_A           93 GISGLQELTLENLEVTG----------------TAPPPLLEATGPDLNILNLRNVSWATRDA---------------WLA  141 (312)
T ss_dssp             TTSCCCEEEEEEEBCBS----------------CCCCCSSSCCSCCCSEEEEESCBCSSSSS---------------HHH
T ss_pred             CcCCccEEEccCCcccc----------------hhHHHHHHhcCCCccEEEccCCCCcchhH---------------HHH
Confidence            35566666666665543                466665  788899999999998885432               233


Q ss_pred             cC-----cCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcc---cCccc--cCCCCCcEEEccCCCCC-------
Q psy10538        124 YF-----RSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHR---LPPEI--QNFENLVELDVSRNGCN-------  185 (288)
Q Consensus       124 ~l-----~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~---l~~~l--~~~~~L~~L~l~~n~~~-------  185 (288)
                      .+     ++|++|++++|+++.++ ..+..+++|++|++++|.+..   ++..+  ..+++|++|++++|+++       
T Consensus       142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence            33     88999999999999775 688889999999999998652   34444  77889999999999887       


Q ss_pred             ------CCccEEEccCCCCCCCCh-HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCC
Q psy10538        186 ------RQVEYVDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNF  258 (288)
Q Consensus       186 ------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~  258 (288)
                            .+|++|++++|.++..++ ..+..+++|+.|++++|.++.+|..   +.  ++|++|++++|+++.+|. +..+
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~---~~--~~L~~L~Ls~N~l~~~p~-~~~l  295 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---LP--AKLSVLDLSYNRLDRNPS-PDEL  295 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS---CC--SEEEEEECCSSCCCSCCC-TTTS
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh---cc--CCceEEECCCCCCCCChh-HhhC
Confidence                  478888888888887552 3445568888888888888888876   44  788888888888888776 8888


Q ss_pred             CCCcEEECcCCCCCCc
Q psy10538        259 ENLVELDVSRNAPSNV  274 (288)
Q Consensus       259 ~~L~~L~L~~N~l~~i  274 (288)
                      ++|+.|++++|++++.
T Consensus       296 ~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          296 PQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEEEEECTTCTTTCC
T ss_pred             CCCCEEeccCCCCCCC
Confidence            8888888888888753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=7.8e-23  Score=186.64  Aligned_cols=124  Identities=23%  Similarity=0.370  Sum_probs=110.9

Q ss_pred             CCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538        149 NRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL  217 (288)
Q Consensus       149 ~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  217 (288)
                      ++|+.|++++|.+..+ |..+..+++|++|++++|+++          .+|++|++++|.++.+++..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            5799999999999865 666888999999999999876          48999999999999998888888999999999


Q ss_pred             ccCccccc-CCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC-CcC
Q psy10538        218 DANHIRDL-PKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS-NVD  275 (288)
Q Consensus       218 ~~n~l~~l-~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~-~ip  275 (288)
                      ++|.++.+ |..   +..+++|++|++++|+++.+|.. +..+++|+.|++++|+++ ++|
T Consensus       355 s~N~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 SYNHIRALGDQS---FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCCEECTTT---TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcccccChhh---ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999977 445   88999999999999999988864 689999999999999998 555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=4.5e-23  Score=194.89  Aligned_cols=247  Identities=14%  Similarity=0.106  Sum_probs=137.7

Q ss_pred             hhhhhhccccccccccCccc-------cccccCCCCcccccccccccCCccccEEeeCCCccccccCc-------cceEE
Q psy10538          6 KFFNKELSSHLFRGKISEDT-------INSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF-------NEWFH   71 (288)
Q Consensus         6 ~~~~~~ls~~~~~g~~p~~~-------~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~-------~~~l~   71 (288)
                      .....+++.+.+.+ +|...       ..+.+....++..+ ...+..++.|+.++++.+.++.+...       ...++
T Consensus        52 ~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           52 NQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            33445566666655 45432       22333333444433 24567889999999999888764321       12355


Q ss_pred             ecCCCCCCCCccc-cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCC
Q psy10538         72 YYNSTKPRGPPEI-NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNR  150 (288)
Q Consensus        72 ~~~~~~~~lp~~l-~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~  150 (288)
                      +.++.++.+|+.+ +.+++|+.|++++|.+.              .+++..|..+++|++|++++|.++.++  +..+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~  193 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------RIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS  193 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------BCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCC--------------CCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence            6666666666553 56666666666666555              445555666777777777777776553  233455


Q ss_pred             ccEEecCCCCCcc-------------------cCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCCh
Q psy10538        151 LRKLGLSDNEIHR-------------------LPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPE  203 (288)
Q Consensus       151 L~~L~l~~n~l~~-------------------l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~  203 (288)
                      |+.|++++|.++.                   ++..+  .++|+.|++++|.++        ++|++|++++|.++.+++
T Consensus       194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES
T ss_pred             hhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH
Confidence            5555555554442                   22111  134555555555444        255555555555555544


Q ss_pred             HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538        204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      ..+..+++|+.|++++|.++.+|..   +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|
T Consensus       272 ~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          272 HPFVKMQRLERLYISNNRLVALNLY---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             GGGTTCSSCCEEECTTSCCCEEECS---SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             HHhcCccCCCEEECCCCCCCCCCcc---cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence            4455555555555555555555544   44555566666666655555555555555566666655555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1e-22  Score=192.45  Aligned_cols=225  Identities=17%  Similarity=0.191  Sum_probs=176.1

Q ss_pred             ccccCCccccEEeeCCCccccccC-------ccceEEecCCCCCCCCcc-ccCCCCccEEEcCCCCccchhhHHHhhcCC
Q psy10538         42 SWSRNASSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPPE-INEDAAYSERVLHESRLQQYEEVVAEWTSK  113 (288)
Q Consensus        42 ~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~~-l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~  113 (288)
                      ..+.+++.|+.++++.+.++.+..       ....+++.++.++.+|+. ++.+++|+.|++++|.+.            
T Consensus        69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------  136 (597)
T 3oja_B           69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------------  136 (597)
T ss_dssp             HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------
T ss_pred             HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC------------
Confidence            456778999999999998877432       123466677777776654 467777888888777666            


Q ss_pred             ceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538        114 LKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------  185 (288)
Q Consensus       114 l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------  185 (288)
                        .+++..|..+++|++|++++|.++.+++ .+..+++|++|++++|.++.++  +..+++|+.+++++|.++       
T Consensus       137 --~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~  212 (597)
T 3oja_B          137 --SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIA  212 (597)
T ss_dssp             --CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred             --CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCch
Confidence              5566668889999999999999987654 6888999999999999988764  334455555555555443       


Q ss_pred             -------------------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc-CCccccccCCCCccEEEccC
Q psy10538        186 -------------------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLSD  245 (288)
Q Consensus       186 -------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~l~~L~~L~l~~  245 (288)
                                         .+|+.|++++|.++..  ..+..+++|+.|++++|.++.+ |..   ++.+++|+.|++++
T Consensus       213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISN  287 (597)
T ss_dssp             CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG---GTTCSSCCEEECTT
T ss_pred             hheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH---hcCccCCCEEECCC
Confidence                               2577888888888764  3456689999999999999976 444   88999999999999


Q ss_pred             CCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       246 n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      |.++.+|..+..+++|+.|++++|.++.+|..+..++.++.+
T Consensus       288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  329 (597)
T ss_dssp             SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             CCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence            999999888888999999999999999999998888777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=6.5e-23  Score=177.87  Aligned_cols=199  Identities=19%  Similarity=0.231  Sum_probs=113.4

Q ss_pred             EecCCCCCCCCcc-ccCCCCccEEEcCCCCccchh---hHH---------HhhcCCceecchHHhhcCcCCcEEEcccCC
Q psy10538         71 HYYNSTKPRGPPE-INEDAAYSERVLHESRLQQYE---EVV---------AEWTSKLKLYSKDVLRYFRSLEELLLDANH  137 (288)
Q Consensus        71 ~~~~~~~~~lp~~-l~~l~~l~~l~l~~n~l~~l~---~~~---------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~  137 (288)
                      ++.++.++.+|+. +..+++|+++++++|++....   ...         ....+.+..+++. +..+++|++|++++|+
T Consensus        34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~  112 (306)
T 2z66_A           34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN  112 (306)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred             ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCc
Confidence            3333333446654 567888888888888776431   111         1112333333322 4556666666666666


Q ss_pred             CcccCc--ccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCCh
Q psy10538        138 IRDLPK--NFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPE  203 (288)
Q Consensus       138 i~~lp~--~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~  203 (288)
                      ++.++.  .+..+++|++|++++|.+... +..+..+++|++|++++|.+.           .+|++|++++|.++.+++
T Consensus       113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  192 (306)
T 2z66_A          113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  192 (306)
T ss_dssp             EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence            665543  455566666666666666533 334555666666666666543           256666666666666655


Q ss_pred             HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc-CCccccCCC-CCcEEECcCCCCC
Q psy10538        204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR-LPPEIQNFE-NLVELDVSRNAPS  272 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~-~p~~l~~~~-~L~~L~L~~N~l~  272 (288)
                      ..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+++. .|..+..++ +|+.|++++|++.
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             HHhcCCCCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            55555666666666666666555431  5556666666666666663 344455553 6666666666664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=4.1e-23  Score=195.11  Aligned_cols=162  Identities=21%  Similarity=0.233  Sum_probs=109.7

Q ss_pred             hHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC--ccccCCCCCcEEEccCCCCC----------C
Q psy10538        119 KDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNGCN----------R  186 (288)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~l~~n~~~----------~  186 (288)
                      +..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++  ..+..+++|++|++++|.+.          .
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            45566666677777777666666666666677777777777666543  24566677777777777644          3


Q ss_pred             CccEEEccCCCCCC-CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEE
Q psy10538        187 QVEYVDKRHCSLPN-VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVEL  264 (288)
Q Consensus       187 ~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L  264 (288)
                      +|++|++++|.++. ..+..+..+++|+.|++++|.++.+++..  ++.+++|+.|++++|+++.+ |..+..+++|+.|
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  526 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL  526 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh--hcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence            67777777777664 33444555777777777777777554321  66777788888888777744 5667777778888


Q ss_pred             ECcCCCCCCcCccccccc
Q psy10538        265 DVSRNAPSNVDSSMVYLK  282 (288)
Q Consensus       265 ~L~~N~l~~ip~~~~~l~  282 (288)
                      ++++|+++.+|..+..++
T Consensus       527 ~l~~N~l~~~p~~~~~l~  544 (606)
T 3vq2_A          527 DCSFNRIETSKGILQHFP  544 (606)
T ss_dssp             ECTTSCCCCEESCGGGSC
T ss_pred             ECCCCcCcccCHhHhhhc
Confidence            888888877777766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=4.5e-23  Score=193.20  Aligned_cols=138  Identities=25%  Similarity=0.344  Sum_probs=95.5

Q ss_pred             ccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCcce
Q psy10538        146 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEE  214 (288)
Q Consensus       146 ~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  214 (288)
                      ..+++|+.|++++|.+..++..+..+++|++|++++|.+.           .+|++|++++|.+....+..+..+++|+.
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            3344444444444444444444555556666666655432           36778888888777666666677788888


Q ss_pred             eecccCccc--ccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538        215 LLLDANHIR--DLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK  286 (288)
Q Consensus       215 L~l~~n~l~--~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~  286 (288)
                      |++++|.++  .+|..   +..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++.+|+. +..++.++.
T Consensus       450 L~l~~n~l~~~~~p~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          450 LKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             EECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EECcCCcCccccchhh---hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            888888876  47766   78888888888888888855 66788888888888888888876653 556666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=186.54  Aligned_cols=212  Identities=14%  Similarity=0.103  Sum_probs=148.5

Q ss_pred             ccccEEeeCCCccccccC-------ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecch
Q psy10538         48 SSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSK  119 (288)
Q Consensus        48 ~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~  119 (288)
                      +.|+.++++.+.++.+..       ..+.+++.++.++.+++ .+..+++|++|++++|+++              .+++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~  117 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--------------NLSS  117 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--------------SCCH
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC--------------cCCH
Confidence            367777777777765322       11235555555554432 3555556666666655544              5566


Q ss_pred             HHhhcCcCCcEEEcccCCCcccCc--ccccCCCccEEecCCC-CCccc-CccccCCCCCcEEEccCCCCC----------
Q psy10538        120 DVLRYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDN-EIHRL-PPEIQNFENLVELDVSRNGCN----------  185 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n-~l~~l-~~~l~~~~~L~~L~l~~n~~~----------  185 (288)
                      ..|..+++|++|++++|+++.+|.  .+..+++|++|++++| .++.+ +..+..+++|++|++++|+++          
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence            668888899999999998888876  6777889999999888 46666 445778888899999888765          


Q ss_pred             CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccc-----------------------------cccCCC
Q psy10538        186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL-----------------------------DFFRLN  236 (288)
Q Consensus       186 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~-----------------------------~~~~l~  236 (288)
                      .+|++|++++|.++.++...+..+++|+.|++++|.++.++...+                             .+..++
T Consensus       198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~  277 (353)
T 2z80_A          198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS  277 (353)
T ss_dssp             SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred             ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence            378889999999888887777778889999999998876432100                             034566


Q ss_pred             CccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCC
Q psy10538        237 RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       237 ~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~  273 (288)
                      +|+.|++++|+++.+|.. +..+++|++|++++|++..
T Consensus       278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            777777777777777665 3667777777777777663

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.7e-22  Score=173.61  Aligned_cols=201  Identities=24%  Similarity=0.352  Sum_probs=168.0

Q ss_pred             eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Cccccc
Q psy10538         69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR  147 (288)
Q Consensus        69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~  147 (288)
                      .++..++.+..+|..+  .+.++++++++|++.              .+++..|..+++|++|++++|.++.+ |..+..
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~--------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS--------------HVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCC--------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             EEEcCcCCcccCCcCC--CCCceEEEeeCCcCC--------------ccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            4566777778888654  568999999998777              55666788899999999999999976 668888


Q ss_pred             CCCccEEecCCCC-Cccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCccee
Q psy10538        148 LNRLRKLGLSDNE-IHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEEL  215 (288)
Q Consensus       148 l~~L~~L~l~~n~-l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  215 (288)
                      +++|++|++++|. ++.+ |..+..+++|++|++++|+++          .+|++|++++|.++.+++..+..+++|+.|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            9999999999997 8877 566888999999999999765          379999999999999988878888999999


Q ss_pred             ecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCcc-ccccccccCC
Q psy10538        216 LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRKD  287 (288)
Q Consensus       216 ~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~~  287 (288)
                      ++++|.++.+|...  +..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++.+|.. +..++.++.+
T Consensus       159 ~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          159 FLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (285)
T ss_dssp             ECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             ECCCCcccccCHHH--hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence            99999999888643  77899999999999999955 67788999999999999999988754 6666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=2.6e-22  Score=176.22  Aligned_cols=220  Identities=15%  Similarity=0.227  Sum_probs=167.8

Q ss_pred             ccCCccccEEeeCCCccccccCccceEEecCCCCCCC-CccccCCCCccEEEcCCCCccchhhHHH-------hhcCCce
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQYEEVVA-------EWTSKLK  115 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l~~~~~-------~~~~~l~  115 (288)
                      +.+++.|+.++++.+.++.                 + |..+..+++|++|++++|++..++....       ...+.+.
T Consensus        74 ~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~  136 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISK-----------------IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIR  136 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCE-----------------ECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCC
T ss_pred             hhCCCCCcEEECCCCccCc-----------------cCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccC
Confidence            4455555555555555443                 3 3345556666666666666655543221       2234555


Q ss_pred             ecchHHhhcCcCCcEEEcccCCCcc---cCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538        116 LYSKDVLRYFRSLEELLLDANHIRD---LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------  185 (288)
Q Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------  185 (288)
                      .+++..|..+++|++|++++|.++.   .|..+..+ +|+.|++++|.++.+|..+.  ++|++|++++|.++       
T Consensus       137 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred             ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHh
Confidence            7777889999999999999999973   35566666 99999999999999887654  68999999999876       


Q ss_pred             ---CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccC----
Q psy10538        186 ---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQN----  257 (288)
Q Consensus       186 ---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~----  257 (288)
                         .+|++|++++|.++.+++..+..+++|+.|++++|.++.+|..   +..+++|+.|++++|+++.++.. +..    
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG---LPDLKLLQVVYLHTNNITKVGVNDFCPVGFG  290 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT---GGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh---hhcCccCCEEECCCCCCCccChhHccccccc
Confidence               3899999999999999988788899999999999999999998   88999999999999999987653 433    


Q ss_pred             --CCCCcEEECcCCCCC--CcC-ccccccccccC
Q psy10538        258 --FENLVELDVSRNAPS--NVD-SSMVYLKLGRK  286 (288)
Q Consensus       258 --~~~L~~L~L~~N~l~--~ip-~~~~~l~~~~~  286 (288)
                        .+.|+.+++++|++.  .++ ..+..++.++.
T Consensus       291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~  324 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA  324 (332)
T ss_dssp             SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred             cccccccceEeecCcccccccCcccccccchhhh
Confidence              467999999999997  444 44556666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=2.6e-23  Score=181.32  Aligned_cols=192  Identities=17%  Similarity=0.160  Sum_probs=166.9

Q ss_pred             CCCccccCCCCccEEEcCC-CCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEec
Q psy10538         79 RGPPEINEDAAYSERVLHE-SRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGL  156 (288)
Q Consensus        79 ~lp~~l~~l~~l~~l~l~~-n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l  156 (288)
                      .+|+.++.+++|++|++++ |.+.              ...|..|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~--------------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  132 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLV--------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEE--------------SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             ccChhHhCCCCCCeeeCCCCCccc--------------ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence            4788999999999999995 7655              334566889999999999999998 78999999999999999


Q ss_pred             CCCCCc-ccCccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc
Q psy10538        157 SDNEIH-RLPPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD  224 (288)
Q Consensus       157 ~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  224 (288)
                      ++|.++ .+|..+..+++|++|++++|.++           ..|++|++++|.++...+..+..++ |+.|++++|.++.
T Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence            999999 78889999999999999999876           2899999999999955455566566 9999999999995


Q ss_pred             cCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538        225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD  287 (288)
Q Consensus       225 l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~  287 (288)
                      .++..  +..+++|+.|++++|+++..++.+..+++|++|++++|+++ .+|..+..++.++.+
T Consensus       212 ~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          212 DASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             CCGGG--CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             cCCHH--HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence            44432  88999999999999999966666888999999999999999 899999998887754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.6e-22  Score=171.25  Aligned_cols=176  Identities=27%  Similarity=0.454  Sum_probs=134.3

Q ss_pred             CCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcc-cccCCCccEEecC
Q psy10538         79 RGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLS  157 (288)
Q Consensus        79 ~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~  157 (288)
                      .+|..+.  +.++.|++++|++.              .+++..|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        30 ~ip~~~~--~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           30 AIPSNIP--ADTKKLDLQSNKLS--------------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCS--------------CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             ccCCCCC--CCCCEEECcCCCCC--------------eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3554443  46777777776665              33444566777777777777777766653 4567777777777


Q ss_pred             CCCCcccCcc-ccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccC
Q psy10538        158 DNEIHRLPPE-IQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP  226 (288)
Q Consensus       158 ~n~l~~l~~~-l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~  226 (288)
                      +|.++.+|.. +..+++|++|++++|+++          .+|++|++++|.++.+++..+..+++|+.|++++|.++.++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            7777766543 566677777777777654          36777777777999999888888999999999999999888


Q ss_pred             CccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538        227 KNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS  272 (288)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~  272 (288)
                      ...  +..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus       174 ~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          174 EGA--FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhH--hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            753  77899999999999999988764 788999999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=6.1e-23  Score=180.16  Aligned_cols=211  Identities=21%  Similarity=0.222  Sum_probs=159.4

Q ss_pred             ccccEEeeCCCccccccC------ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHH
Q psy10538         48 SSIREYLCHKTYLAAEEA------FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV  121 (288)
Q Consensus        48 ~~L~~l~~~~~~l~~l~~------~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~  121 (288)
                      ..++.++++.+.++.+..      ....+++.++.+..+|..++.+++|++|++++|.+..+|               ..
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp---------------~~  145 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP---------------AS  145 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC---------------GG
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc---------------HH
Confidence            445555555555443222      112355555555668888888889999999888776432               23


Q ss_pred             hhcCcCCcEEEcccCCCc-ccCccccc---------CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------
Q psy10538        122 LRYFRSLEELLLDANHIR-DLPKNFFR---------LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------  185 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~-~lp~~~~~---------l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------  185 (288)
                      +..+++|++|++++|.+. .+|..+..         +++|++|++++|.++.+|..+..+++|++|++++|+++      
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l  225 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI  225 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence            667788888888886644 67766543         78888888888888888888888888888888888766      


Q ss_pred             ---CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCC
Q psy10538        186 ---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFEN  260 (288)
Q Consensus       186 ---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~  260 (288)
                         .+|++|++++|.+....+..+..+++|+.|++++|.+. .+|..   ++.+++|+.|++++|.+. .+|..++.+++
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~---~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD---IHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT---GGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh---hhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence               37888888888887666666777999999999998765 78877   889999999999998866 99999999999


Q ss_pred             CcEEECcCCCCCCcCc
Q psy10538        261 LVELDVSRNAPSNVDS  276 (288)
Q Consensus       261 L~~L~L~~N~l~~ip~  276 (288)
                      |+.+++..+.+..++.
T Consensus       303 L~~l~l~~~~~~~l~~  318 (328)
T 4fcg_A          303 NCIILVPPHLQAQLDQ  318 (328)
T ss_dssp             TCEEECCGGGSCC---
T ss_pred             ceEEeCCHHHHHHHhh
Confidence            9999999888776554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=3.5e-22  Score=183.27  Aligned_cols=190  Identities=19%  Similarity=0.330  Sum_probs=101.7

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHH--------hhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEe
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVA--------EWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG  155 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~--------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~  155 (288)
                      +..+++|+++++++|.+..++....        ...+.+..+.+  +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~  249 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD  249 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred             hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence            5556666666666666655433211        11233333333  445556666666666555543 344555666666


Q ss_pred             cCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCC
Q psy10538        156 LSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK  227 (288)
Q Consensus       156 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~  227 (288)
                      +++|.++.+++ +..+++|++|++++|.++        .+|++|++++|+++.+++  +..+++|+.|++++|.++.+++
T Consensus       250 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          250 LANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            66666554443 455555666666666544        255666666666555544  3345556666666665555443


Q ss_pred             ccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538        228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR  285 (288)
Q Consensus       228 ~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~  285 (288)
                          +..+++|+.|++++|+++.++ .+..+++|+.|++++|+++++++ +..++.++
T Consensus       327 ----~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~  378 (466)
T 1o6v_A          327 ----VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT  378 (466)
T ss_dssp             ----GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCC
T ss_pred             ----hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCC
Confidence                445555666666666555542 45555666666666666654444 44444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=2.3e-22  Score=183.86  Aligned_cols=209  Identities=21%  Similarity=0.278  Sum_probs=119.7

Q ss_pred             ccccEEeeCCCccccccCc-------cceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecch
Q psy10538         48 SSIREYLCHKTYLAAEEAF-------NEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSK  119 (288)
Q Consensus        48 ~~L~~l~~~~~~l~~l~~~-------~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~  119 (288)
                      +.++.++++.+.++.+...       .+.+++.++.+..++ ..+..+++|++|++++|++.              .+++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~  140 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT--------------VIPS  140 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--------------BCCT
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC--------------ccCh
Confidence            4567777777776552110       011222233222232 23444444555555444443              4445


Q ss_pred             HHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCC-CCCcccCc-cccCCCCCcEEEccCCCCC--------CCc
Q psy10538        120 DVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSD-NEIHRLPP-EIQNFENLVELDVSRNGCN--------RQV  188 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~-n~l~~l~~-~l~~~~~L~~L~l~~n~~~--------~~L  188 (288)
                      ..|..+++|++|++++|+++.+|. .+..+++|+.|++++ +.++.++. .+..+++|++|++++|+++        .+|
T Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L  220 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL  220 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred             hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence            556666666666666666665544 455566666666666 34445544 3556666666666666655        256


Q ss_pred             cEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECc
Q psy10538        189 EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVS  267 (288)
Q Consensus       189 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~  267 (288)
                      ++|++++|.++.+++..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+++.+|.. +..+++|+.|+++
T Consensus       221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH--hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            66666666666666666666666777777777666554331  56666677777777766655543 4566667777776


Q ss_pred             CCCCC
Q psy10538        268 RNAPS  272 (288)
Q Consensus       268 ~N~l~  272 (288)
                      +|++.
T Consensus       299 ~Np~~  303 (452)
T 3zyi_A          299 HNPWN  303 (452)
T ss_dssp             SSCEE
T ss_pred             CCCcC
Confidence            66653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=8.4e-22  Score=173.69  Aligned_cols=233  Identities=15%  Similarity=0.159  Sum_probs=186.0

Q ss_pred             cccCCccccEEeeCCCccccccCcc-----ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH--------h
Q psy10538         43 WSRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA--------E  109 (288)
Q Consensus        43 ~~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~--------~  109 (288)
                      .+..+++|+.++++.+.++.+....     +.+++.++.+..+| .+..+++|+++++++|++..++....        .
T Consensus        61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l  139 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNL  139 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred             hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEEC
Confidence            3667888999999988877654322     34778888888775 58889999999999999888765211        1


Q ss_pred             hcC-CceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---
Q psy10538        110 WTS-KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---  185 (288)
Q Consensus       110 ~~~-~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---  185 (288)
                      ..+ .+..+  ..+..+++|++|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.+++++|.+.   
T Consensus       140 ~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~  215 (347)
T 4fmz_A          140 GANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT  215 (347)
T ss_dssp             TTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCcccc--cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence            112 22222  237888899999999999887765 7788999999999999888766 778889999999999876   


Q ss_pred             -----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCC
Q psy10538        186 -----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN  260 (288)
Q Consensus       186 -----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~  260 (288)
                           .+|++|++++|.++.+++  +..+++|++|++++|.++.++.    +..+++|+.|++++|+++.++ .+..+++
T Consensus       216 ~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-~~~~l~~  288 (347)
T 4fmz_A          216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA----VKDLTKLKMLNVGSNQISDIS-VLNNLSQ  288 (347)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG-GGGGCTT
T ss_pred             hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChh----HhcCCCcCEEEccCCccCCCh-hhcCCCC
Confidence                 489999999999998877  6678999999999999998864    788999999999999999885 5888999


Q ss_pred             CcEEECcCCCCCC-cCccccccccccCC
Q psy10538        261 LVELDVSRNAPSN-VDSSMVYLKLGRKD  287 (288)
Q Consensus       261 L~~L~L~~N~l~~-ip~~~~~l~~~~~~  287 (288)
                      |+.|++++|+++. .|..+..++.++.+
T Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          289 LNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             CSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             CCEEECcCCcCCCcChhHhhccccCCEE
Confidence            9999999999985 44566777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=2.3e-22  Score=183.16  Aligned_cols=212  Identities=20%  Similarity=0.336  Sum_probs=102.2

Q ss_pred             ccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhH
Q psy10538         27 NSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEV  106 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~  106 (288)
                      .+.|....++.++. ..   -+.++.++++.+.++.+.                +..+..+++|++|++++|++.     
T Consensus        47 ~v~c~~~~l~~iP~-~~---~~~l~~L~L~~n~i~~~~----------------~~~~~~l~~L~~L~Ls~n~i~-----  101 (440)
T 3zyj_A           47 KVICVRKNLREVPD-GI---STNTRLLNLHENQIQIIK----------------VNSFKHLRHLEILQLSRNHIR-----  101 (440)
T ss_dssp             EEECCSCCCSSCCS-CC---CTTCSEEECCSCCCCEEC----------------TTTTSSCSSCCEEECCSSCCC-----
T ss_pred             EEEeCCCCcCcCCC-CC---CCCCcEEEccCCcCCeeC----------------HHHhhCCCCCCEEECCCCcCC-----
Confidence            34555555555442 11   146777888777776522                134555666666666665554     


Q ss_pred             HHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCC-
Q psy10538        107 VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNG-  183 (288)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~-  183 (288)
                               .+++..|.++++|++|++++|+++.+|. .+..+++|+.|++++|.++.++. .+..+++|++|++++|. 
T Consensus       102 ---------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~  172 (440)
T 3zyj_A          102 ---------TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR  172 (440)
T ss_dssp             ---------EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred             ---------ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC
Confidence                     3333444455555555555555554433 34445555555555555554433 24444455555554421 


Q ss_pred             CC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCC-
Q psy10538        184 CN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLP-  252 (288)
Q Consensus       184 ~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p-  252 (288)
                      +.          .+|++|++++|+++.+|.  +..+++|+.|++++|.++.++...  +..+++|+.|++++|+++.++ 
T Consensus       173 l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          173 LSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGS--FQGLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             CCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECT
T ss_pred             cceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhh--hccCccCCEEECCCCceeEECh
Confidence            11          244555555555544442  233444555555555544442221  444445555555555544332 


Q ss_pred             ccccCCCCCcEEECcCCCCCCcCc
Q psy10538        253 PEIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       253 ~~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      ..+.++++|+.|++++|+++.+|.
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             hhhcCCCCCCEEECCCCCCCccCh
Confidence            234444455555555555544443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=5.2e-22  Score=180.88  Aligned_cols=188  Identities=24%  Similarity=0.329  Sum_probs=126.5

Q ss_pred             CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEec
Q psy10538         78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGL  156 (288)
Q Consensus        78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l  156 (288)
                      ..+|..+.  +.++.|++++|++.              .+++..|.++++|++|++++|.++.++ ..|..+++|++|++
T Consensus        56 ~~iP~~~~--~~l~~L~L~~n~i~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           56 REVPDGIS--TNTRLLNLHENQIQ--------------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCC--------------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CcCCCCCC--CCCcEEEccCCcCC--------------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            44665543  56777777776655              445556677777777777777777654 45666777777777


Q ss_pred             CCCCCcccCc-cccCCCCCcEEEccCCCCC----------CCccEEEccC-CCCCCCChHHHhcCCCcceeecccCcccc
Q psy10538        157 SDNEIHRLPP-EIQNFENLVELDVSRNGCN----------RQVEYVDKRH-CSLPNVPEDVLRYFRSLEELLLDANHIRD  224 (288)
Q Consensus       157 ~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  224 (288)
                      ++|.++.++. .+..+++|++|++++|+++          .+|++|++++ +.++.++...+..+++|+.|++++|.++.
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            7777776655 3666777777777777655          3677777777 44556666666667777777777777777


Q ss_pred             cCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCc-ccccccccc
Q psy10538        225 LPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDS-SMVYLKLGR  285 (288)
Q Consensus       225 l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~-~~~~l~~~~  285 (288)
                      +|.    +..+++|+.|++++|+++.+ |..+.++++|+.|++++|+++.++. .+..++.++
T Consensus       200 ~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          200 IPN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             CCC----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             ccc----cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            764    66777777777777777754 4566777777777777777775543 344444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=7.5e-22  Score=188.96  Aligned_cols=216  Identities=19%  Similarity=0.195  Sum_probs=146.1

Q ss_pred             EEecCCCCCCCCc-cccCCCCccEEEcCCCCcc--chhhH------------HHhhcCCceecchHHhhcCcCCcEEEcc
Q psy10538         70 FHYYNSTKPRGPP-EINEDAAYSERVLHESRLQ--QYEEV------------VAEWTSKLKLYSKDVLRYFRSLEELLLD  134 (288)
Q Consensus        70 l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~--~l~~~------------~~~~~~~l~~~~~~~~~~l~~L~~L~l~  134 (288)
                      +++.++.+..+++ .+..+++|+++++++|.+.  .++..            +....+.+..+.+..|..+++|++|+++
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            4444444444443 3566677777777776532  11111            1123466777778888889999999999


Q ss_pred             cCCCc-ccC-cccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC------------CCccEEEccCCCCC
Q psy10538        135 ANHIR-DLP-KNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN------------RQVEYVDKRHCSLP  199 (288)
Q Consensus       135 ~n~i~-~lp-~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~------------~~L~~L~l~~n~l~  199 (288)
                      +|.++ .+| ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.            .+|++|++++|+++
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            99987 565 4777888999999999988765 344667777888888777653            36788888888888


Q ss_pred             CCChHHHhcCCCcceeecccCcccccCCccc------cccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCC
Q psy10538        200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYL------DFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       200 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~------~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~  272 (288)
                      .+++..+..+++|+.|++++|.++.++...+      .++.+++|+.|++++|+++.+|. .+.++++|+.|++++|+++
T Consensus       494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence            7777777777778888888877775532100      14566777777777777777765 3667777777777777777


Q ss_pred             CcCccc-ccccccc
Q psy10538        273 NVDSSM-VYLKLGR  285 (288)
Q Consensus       273 ~ip~~~-~~l~~~~  285 (288)
                      .+|+.. ..++.++
T Consensus       574 ~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          574 TLPASVFNNQVSLK  587 (680)
T ss_dssp             CCCTTTTTTCTTCC
T ss_pred             cCCHhHhCCCCCCC
Confidence            776654 3444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=4.6e-23  Score=182.46  Aligned_cols=204  Identities=19%  Similarity=0.202  Sum_probs=168.1

Q ss_pred             ceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcc-c
Q psy10538         68 EWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-F  145 (288)
Q Consensus        68 ~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~  145 (288)
                      ..+++.++.++.+|+ .+..+++|+.+++++|++.              .+.+..|..+++|++|++++|+++.+|.. +
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  120 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF  120 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--------------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence            456777777778776 7888999999999998777              55666788899999999999999988775 7


Q ss_pred             ccCCCccEEecCCCCCcccCc--cccCCCCCcEEEccCCC-CC----------CCccEEEccCCCCCCCChHHHhcCCCc
Q psy10538        146 FRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNG-CN----------RQVEYVDKRHCSLPNVPEDVLRYFRSL  212 (288)
Q Consensus       146 ~~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~-~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L  212 (288)
                      ..+++|++|++++|.++.+|.  .+..+++|++|++++|. +.          .+|++|++++|.++.+.+..+..+++|
T Consensus       121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            889999999999999998876  57888999999999884 33          378999999999998877777778999


Q ss_pred             ceeecccCcccccCCccccccCCCCccEEEccCCCCccC--------------------------------CccccCCCC
Q psy10538        213 EELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL--------------------------------PPEIQNFEN  260 (288)
Q Consensus       213 ~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------------p~~l~~~~~  260 (288)
                      +.|++++|.++.+|...  +..+++|+.|++++|.++.+                                |..+..+++
T Consensus       201 ~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          201 SHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             CeecCCCCccccchhhh--hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence            99999999998887652  44588999999999988753                                334677889


Q ss_pred             CcEEECcCCCCCCcCccc-cccccccCC
Q psy10538        261 LVELDVSRNAPSNVDSSM-VYLKLGRKD  287 (288)
Q Consensus       261 L~~L~L~~N~l~~ip~~~-~~l~~~~~~  287 (288)
                      |+.|++++|+++.+|..+ ..++.++.+
T Consensus       279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L  306 (353)
T 2z80_A          279 LLELEFSRNQLKSVPDGIFDRLTSLQKI  306 (353)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence            999999999999999886 677776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=6.8e-23  Score=177.75  Aligned_cols=208  Identities=20%  Similarity=0.215  Sum_probs=159.2

Q ss_pred             CCCCCCCccccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecc--hHHhhcCcCCcEEEcccCCCcccC
Q psy10538         75 STKPRGPPEINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYS--KDVLRYFRSLEELLLDANHIRDLP  142 (288)
Q Consensus        75 ~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~--~~~~~~l~~L~~L~l~~n~i~~lp  142 (288)
                      +.++.+|..+.  ++++++++++|+++.++....          ...+.+..+.  +..+..+++|++|++++|.++.+|
T Consensus        17 ~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~   94 (306)
T 2z66_A           17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS   94 (306)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred             CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence            33455776553  689999999999998775422          2234444332  455667889999999999988888


Q ss_pred             cccccCCCccEEecCCCCCcccCc--cccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCC-CChHHHhcC
Q psy10538        143 KNFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPN-VPEDVLRYF  209 (288)
Q Consensus       143 ~~~~~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~-~~~~~~~~~  209 (288)
                      ..+..+++|++|++++|.++.++.  .+..+++|++|++++|.+.          .+|++|++++|.++. ..+..+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence            888889999999999999887754  5778889999999988764          478999999998875 334456668


Q ss_pred             CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCC-cCccccccc-cccC
Q psy10538        210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSN-VDSSMVYLK-LGRK  286 (288)
Q Consensus       210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~-ip~~~~~l~-~~~~  286 (288)
                      ++|+.|++++|.++.++...  +..+++|+.|++++|+++.++. .+..+++|+.|++++|+++. .|..+..++ .++.
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  252 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  252 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred             cCCCEEECCCCCcCCcCHHH--hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence            89999999999999774432  7888999999999999997765 57888999999999999984 555666553 4443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=3.7e-22  Score=188.60  Aligned_cols=161  Identities=20%  Similarity=0.249  Sum_probs=70.5

Q ss_pred             hhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCccc-Cc-cccCCCCCcEEEccCCCCC----------CCc
Q psy10538        122 LRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRL-PP-EIQNFENLVELDVSRNGCN----------RQV  188 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~-~l~~~~~L~~L~l~~n~~~----------~~L  188 (288)
                      +..+++|++|++++|+++.+ |..+..+++|+.|++++|.++.. +. .+..+++|++|++++|.+.          ++|
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            44444444444444444422 23344444444444444444422 11 1344444444444444332          244


Q ss_pred             cEEEccCCCCCCC---ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEE
Q psy10538        189 EYVDKRHCSLPNV---PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVEL  264 (288)
Q Consensus       189 ~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L  264 (288)
                      ++|++++|.++..   .+..+..+++|+.|++++|.++.+++..  ++.+++|+.|++++|+++ ..|..+..+++| .|
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA--FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh--hccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence            4555555544421   1122333455555555555555432211  445555555555555555 233345555555 55


Q ss_pred             ECcCCCCCCcCc-ccccccccc
Q psy10538        265 DVSRNAPSNVDS-SMVYLKLGR  285 (288)
Q Consensus       265 ~L~~N~l~~ip~-~~~~l~~~~  285 (288)
                      ++++|+++.+|+ .+..++.++
T Consensus       529 ~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          529 NLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             ECCSSCCCCCCGGGHHHHHTSS
T ss_pred             ECcCCcccccCHhhcccCCCCC
Confidence            555555554333 233444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=4.4e-22  Score=182.15  Aligned_cols=247  Identities=20%  Similarity=0.191  Sum_probs=171.5

Q ss_pred             hhcccccccc--ccCccccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCCCccc
Q psy10538         10 KELSSHLFRG--KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEI   84 (288)
Q Consensus        10 ~~ls~~~~~g--~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l   84 (288)
                      .++++|.+.+  .+|.++..+.+....++..+   .+.++++|+.++++.+.+++++.   ..+.+++.++.+..+| .+
T Consensus       116 L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~  191 (454)
T 1jl5_A          116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP---ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-EL  191 (454)
T ss_dssp             EECCSSCCSCCCSCCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CC
T ss_pred             EECCCCccCcccCCCCCCCEEECcCCCCCCCc---ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cc
Confidence            3444444444  22333444444433333333   36778888888888888776433   2346788888888887 58


Q ss_pred             cCCCCccEEEcCCCCccchhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCC
Q psy10538         85 NEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD  158 (288)
Q Consensus        85 ~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~  158 (288)
                      +.+++|+++++++|++..++...      ....+.+..++.  +..+++|++|++++|+++.+|..   +++|+.|++++
T Consensus       192 ~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~  266 (454)
T 1jl5_A          192 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRD  266 (454)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCS
T ss_pred             cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCC
Confidence            89999999999999988765432      233455665552  77888888888888888877753   46788888888


Q ss_pred             CCCcccCccccCCCCCcEEEccCCCCCC------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccc
Q psy10538        159 NEIHRLPPEIQNFENLVELDVSRNGCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF  232 (288)
Q Consensus       159 n~l~~l~~~l~~~~~L~~L~l~~n~~~~------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~  232 (288)
                      |.++.+|..   .++|++|++++|++++      +|++|++++|.++.++.    ..++|+.|++++|+++.+|..    
T Consensus       267 N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~----  335 (454)
T 1jl5_A          267 NYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----  335 (454)
T ss_dssp             SCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC----
T ss_pred             CcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc----
Confidence            888877653   3678888888887653      67888888887776542    125788888888888877753    


Q ss_pred             cCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC---cCcccccc
Q psy10538        233 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN---VDSSMVYL  281 (288)
Q Consensus       233 ~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~---ip~~~~~l  281 (288)
                        +++|+.|++++|+++.+|.   .+++|+.|++++|+++.   +|.++..+
T Consensus       336 --~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          336 --PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             --CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             --CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence              4678888888888887776   46778888888888775   56666666

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=7.4e-23  Score=191.07  Aligned_cols=97  Identities=24%  Similarity=0.223  Sum_probs=71.9

Q ss_pred             CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc-cC---CccccccCCCCccEEEccCCCCccCCc---cccCCC
Q psy10538        187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD-LP---KNYLDFFRLNRLRKLGLSDNEIHRLPP---EIQNFE  259 (288)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-l~---~~~~~~~~l~~L~~L~l~~n~l~~~p~---~l~~~~  259 (288)
                      ++++|++++|.++.+|...+..+++|+.|++++|.++. +|   ..   ++.+++|+.|++++|+++.++.   .+..++
T Consensus       311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC---KGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC---TTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhh---hhccccCcEEEccCCcccccccchhhhhcCC
Confidence            57778888888888887776668888888888888874 32   22   5667788888888888876653   467778


Q ss_pred             CCcEEECcCCCCCCcCccccccccccC
Q psy10538        260 NLVELDVSRNAPSNVDSSMVYLKLGRK  286 (288)
Q Consensus       260 ~L~~L~L~~N~l~~ip~~~~~l~~~~~  286 (288)
                      +|+.|++++|+++.+|..+..++.++.
T Consensus       388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~  414 (549)
T 2z81_A          388 NLTSLDISRNTFHPMPDSCQWPEKMRF  414 (549)
T ss_dssp             TCCEEECTTCCCCCCCSCCCCCTTCCE
T ss_pred             CCCEEECCCCCCccCChhhcccccccE
Confidence            888888888888888877766665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=1.1e-21  Score=180.03  Aligned_cols=219  Identities=21%  Similarity=0.315  Sum_probs=109.5

Q ss_pred             ccCCccccEEeeCCCccccccCc-----cceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhh-------c
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAF-----NEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEW-------T  111 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~-----~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~-------~  111 (288)
                      +.++++|+.++++.+.++.....     .+.+++.++.+..+|+ +..+++|++|++++|.+..++......       .
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  164 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG  164 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence            34455555555555544443211     1234455555555544 555555555555555555443210000       0


Q ss_pred             CCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------
Q psy10538        112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------  185 (288)
Q Consensus       112 ~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------  185 (288)
                      +.+..+.  .+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+++ ++.+++|++|++++|+++      
T Consensus       165 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~  240 (466)
T 1o6v_A          165 NQVTDLK--PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLA  240 (466)
T ss_dssp             ESCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGG
T ss_pred             CcccCch--hhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhh
Confidence            1111111  25666777777777777666543 5566667777777766665433 445556666666666554      


Q ss_pred             --CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcE
Q psy10538        186 --RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVE  263 (288)
Q Consensus       186 --~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~  263 (288)
                        .+|++|++++|.++.+++  +..+++|+.|++++|.++.++.    +..+++|+.|++++|+++.++. +..+++|+.
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~  313 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP-ISNLKNLTY  313 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence              245555555555555443  3344555555555555554443    3444444444444444444332 344444444


Q ss_pred             EECcCCCCCCc
Q psy10538        264 LDVSRNAPSNV  274 (288)
Q Consensus       264 L~L~~N~l~~i  274 (288)
                      |++++|+++++
T Consensus       314 L~L~~n~l~~~  324 (466)
T 1o6v_A          314 LTLYFNNISDI  324 (466)
T ss_dssp             EECCSSCCSCC
T ss_pred             EECcCCcCCCc
Confidence            44444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=6.9e-22  Score=180.64  Aligned_cols=219  Identities=20%  Similarity=0.322  Sum_probs=178.2

Q ss_pred             ccEEeeCCCccccccC----ccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538         50 IREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY  124 (288)
Q Consensus        50 L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~  124 (288)
                      ...+.|....++.++.    ....+++.++.+..++ ..+..+++|++|++++|++.              .+++..|.+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~~~~  121 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------QIEVGAFNG  121 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTT
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------CcChhhccC
Confidence            4567777777665432    3345777777777664 46777888888888887766              667778999


Q ss_pred             CcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCC-CC----------CCccEE
Q psy10538        125 FRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNG-CN----------RQVEYV  191 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~-~~----------~~L~~L  191 (288)
                      +++|++|++++|+++.+|. .+..+++|++|++++|.++.+|. .+..+++|++|++++|. +.          .+|++|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            9999999999999998876 57789999999999999998876 57889999999999853 22          489999


Q ss_pred             EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCC
Q psy10538        192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNA  270 (288)
Q Consensus       192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~  270 (288)
                      ++++|+++.++.  +..+++|+.|++++|.++.+++..  +..+++|+.|++++|+++.+ |..+.++++|+.|++++|+
T Consensus       202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCccccccc--ccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            999999998864  556899999999999999875542  88999999999999999965 5568999999999999999


Q ss_pred             CCCcCccc-cccccccC
Q psy10538        271 PSNVDSSM-VYLKLGRK  286 (288)
Q Consensus       271 l~~ip~~~-~~l~~~~~  286 (288)
                      ++.+|... ..++.++.
T Consensus       278 l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             CSCCCTTSSTTCTTCCE
T ss_pred             CCccChHHhccccCCCE
Confidence            99888654 45665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=1.7e-23  Score=182.31  Aligned_cols=184  Identities=18%  Similarity=0.107  Sum_probs=153.5

Q ss_pred             CCCCccEEEcCCCCccchhhHHHhhcCCceecchHH-hhcCcCCcEEEcccCCCcccCcccccC-----CCccEEecCCC
Q psy10538         86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV-LRYFRSLEELLLDANHIRDLPKNFFRL-----NRLRKLGLSDN  159 (288)
Q Consensus        86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~-~~~l~~L~~L~l~~n~i~~lp~~~~~l-----~~L~~L~l~~n  159 (288)
                      .+++|++|++++|++..             .++... +..+++|++|++++|+++.+|..+..+     ++|++|++++|
T Consensus        93 ~l~~L~~L~L~~n~l~~-------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           93 GISGLQELTLENLEVTG-------------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             TTSCCCEEEEEEEBCBS-------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred             CcCCccEEEccCCcccc-------------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence            68889999999988763             122222 278999999999999999888877776     89999999999


Q ss_pred             CCcccC-ccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCC---ChHHHhcCCCcceeecccCc
Q psy10538        160 EIHRLP-PEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNV---PEDVLRYFRSLEELLLDANH  221 (288)
Q Consensus       160 ~l~~l~-~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~  221 (288)
                      .++.++ ..++.+++|++|++++|++.              .+|++|++++|+++.+   +...+..+++|+.|++++|.
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            999876 67899999999999999853              4899999999999954   34556678999999999999


Q ss_pred             ccccCC-ccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        222 IRDLPK-NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       222 l~~l~~-~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      ++..++ ..  +..+++|++|++++|+++.+|..+.  ++|+.|++++|+++.+|. +..++.++.+
T Consensus       240 l~~~~~~~~--~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L  301 (312)
T 1wwl_A          240 LRDAAGAPS--CDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNL  301 (312)
T ss_dssp             CCSSCCCSC--CCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEE
T ss_pred             CCcccchhh--hhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEE
Confidence            997552 21  6678999999999999999998776  899999999999999977 7777776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=9e-23  Score=178.14  Aligned_cols=151  Identities=19%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCC-----------CCccEEEc
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN-----------RQVEYVDK  193 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l  193 (288)
                      ++|++|++++|+++.++..  .+++|+.|++++|.++.+++ .+..+++|++|++++|.++           .+|++|++
T Consensus        99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            4555555555555544332  24556666666666655432 3455556666666666543           25566666


Q ss_pred             cCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-
Q psy10538        194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-  272 (288)
Q Consensus       194 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-  272 (288)
                      ++|.++.++...  .+++|+.|++++|.++.+|..   +..+++|+.|++++|+++.+|..+..+++|+.|++++|++. 
T Consensus       177 ~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          177 QYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             TTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred             CCCcCccccccc--ccccCCEEECCCCcCCcchhh---hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC
Confidence            666665553322  245566666666666655554   55556666666666666665555555666666666666655 


Q ss_pred             -CcCcccccccc
Q psy10538        273 -NVDSSMVYLKL  283 (288)
Q Consensus       273 -~ip~~~~~l~~  283 (288)
                       .+|..+..++.
T Consensus       252 ~~~~~~~~~~~~  263 (317)
T 3o53_A          252 GTLRDFFSKNQR  263 (317)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             cCHHHHHhcccc
Confidence             44444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=6.8e-22  Score=181.70  Aligned_cols=265  Identities=15%  Similarity=0.102  Sum_probs=208.1

Q ss_pred             hhhhhhhccccccccccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccCc-------cceEE
Q psy10538          5 SKFFNKELSSHLFRGKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF-------NEWFH   71 (288)
Q Consensus         5 ~~~~~~~ls~~~~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~-------~~~l~   71 (288)
                      ++....+|+++.+.+..|..+..+      .+....++... ...+.++++|+.++++.+.++.+...       ...++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            345567888888888766554433      33323333332 24567788899999988887664421       23477


Q ss_pred             ecCCCCCCC-CccccCCCCccEEEcCCCCccchhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccCCCcc
Q psy10538         72 YYNSTKPRG-PPEINEDAAYSERVLHESRLQQYEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD  140 (288)
Q Consensus        72 ~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~  140 (288)
                      +.++.+..+ |..+..+++|++|++++|.+..++..          +....+.+..+++..+..+++|+.|++++|.++.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            777776665 44678888999999999988765421          2234567778888899999999999999999997


Q ss_pred             cCc-ccccCCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhc
Q psy10538        141 LPK-NFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRY  208 (288)
Q Consensus       141 lp~-~~~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~  208 (288)
                      ++. .+..+++|+.|++++|... .+|.......+|++|++++|+++          .+|++|++++|.++.+++..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            654 7888999999999998754 67776666679999999999876          48999999999999998888888


Q ss_pred             CCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538        209 FRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS  272 (288)
Q Consensus       209 ~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~  272 (288)
                      +++|+.|++++|.++.++...  +..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYA--FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTT--BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccCCEEECCCCccceECHHH--hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            999999999999999775432  88999999999999999988864 688999999999999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=3e-22  Score=186.96  Aligned_cols=146  Identities=23%  Similarity=0.378  Sum_probs=123.8

Q ss_pred             hhcCcCCcEEEcccCCCcccC---cccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEE
Q psy10538        122 LRYFRSLEELLLDANHIRDLP---KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYV  191 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L  191 (288)
                      +..+++|++|++++|+++.++   ..+..+++|+.|++++|.++.+|..+..+++|++|++++|+++       .+|++|
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L  436 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL  436 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred             hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence            567889999999999998765   3577889999999999999988888888889999999999875       489999


Q ss_pred             EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCC
Q psy10538        192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNA  270 (288)
Q Consensus       192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~  270 (288)
                      ++++|+++.++    ..+++|+.|++++|+++.+|.    .+.+++|++|++++|+++.+|+ .+..+++|+.|++++|+
T Consensus       437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          437 DVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD----ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             ECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC----GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCChhhhc----ccCChhcEEECCCCccCcCCC----cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            99999998775    357889999999999999887    4568899999999999996665 58889999999999999


Q ss_pred             CC-CcC
Q psy10538        271 PS-NVD  275 (288)
Q Consensus       271 l~-~ip  275 (288)
                      +. ++|
T Consensus       509 ~~~~~~  514 (549)
T 2z81_A          509 WDCSCP  514 (549)
T ss_dssp             BCCCHH
T ss_pred             ccCCCc
Confidence            86 554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=1.5e-21  Score=178.67  Aligned_cols=216  Identities=22%  Similarity=0.253  Sum_probs=161.3

Q ss_pred             CccccEEeeCCCccccccC---ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHH------HhhcCCceec
Q psy10538         47 ASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLY  117 (288)
Q Consensus        47 l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~  117 (288)
                      .+.|+.++++.+.++.+..   ..+.+++.++.++.+| .++.+++|+++++++|++..++...      ....+.+..+
T Consensus       110 ~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l  188 (454)
T 1jl5_A          110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL  188 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC
T ss_pred             cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcC
Confidence            3677888888887766433   2356888888888888 5999999999999999998876532      2345666666


Q ss_pred             chHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEE
Q psy10538        118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYV  191 (288)
Q Consensus       118 ~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L  191 (288)
                      +  .+..+++|++|++++|.++.+|...   ++|+.|++++|.++.+|. +..+++|++|++++|+++      .+|++|
T Consensus       189 ~--~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L  262 (454)
T 1jl5_A          189 P--ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEAL  262 (454)
T ss_dssp             C--CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEE
T ss_pred             c--cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccccccccCEE
Confidence            5  3788999999999999998877643   588999999999888884 888899999999999876      378899


Q ss_pred             EccCCCCCCCChHHHhcCCCcceeecccCcccccCCcccc-------------ccCC-CCccEEEccCCCCccCCccccC
Q psy10538        192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD-------------FFRL-NRLRKLGLSDNEIHRLPPEIQN  257 (288)
Q Consensus       192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~-------------~~~l-~~L~~L~l~~n~l~~~p~~l~~  257 (288)
                      ++++|.++.+|..    +++|+.+++++|.++.+|.....             +..+ ++|+.|++++|+++.+|..   
T Consensus       263 ~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---  335 (454)
T 1jl5_A          263 NVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---  335 (454)
T ss_dssp             ECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---
T ss_pred             ECCCCcccccCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---
Confidence            9999988887652    46778888888877765431000             0111 4677777777777776653   


Q ss_pred             CCCCcEEECcCCCCCCcCc
Q psy10538        258 FENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       258 ~~~L~~L~L~~N~l~~ip~  276 (288)
                      +++|+.|++++|+++.+|.
T Consensus       336 ~~~L~~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          336 PPRLERLIASFNHLAEVPE  354 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCC
T ss_pred             CCcCCEEECCCCccccccc
Confidence            4678888888888887777

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=1.3e-21  Score=187.26  Aligned_cols=202  Identities=20%  Similarity=0.273  Sum_probs=142.0

Q ss_pred             eEEecCCCCCCC-CccccCCCCccEEEcCCCCccc-hhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccC
Q psy10538         69 WFHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQ-YEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDAN  136 (288)
Q Consensus        69 ~l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~-l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n  136 (288)
                      .+++.++.+..+ |..+..+++|+++++++|.+.. ++..          +....+.+..+.+..|..+++|++|++++|
T Consensus       385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n  464 (680)
T 1ziw_A          385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV  464 (680)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred             eEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence            344555555554 4467778888888888888753 2211          112345566666677777777777777777


Q ss_pred             CCc---ccCcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCC------------------CCccEEEcc
Q psy10538        137 HIR---DLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN------------------RQVEYVDKR  194 (288)
Q Consensus       137 ~i~---~lp~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~------------------~~L~~L~l~  194 (288)
                      .++   .+|..+..+++|+.|++++|.++.+++. +..+++|++|++++|.++                  .+|++|+++
T Consensus       465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~  544 (680)
T 1ziw_A          465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE  544 (680)
T ss_dssp             CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred             cccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence            765   4566777778888888888887776544 677777888888877654                  367788888


Q ss_pred             CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-cc-CCCCCcEEECcCCCCC
Q psy10538        195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQ-NFENLVELDVSRNAPS  272 (288)
Q Consensus       195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~-~~~~L~~L~L~~N~l~  272 (288)
                      +|+++.+|+..+..+++|+.|++++|+++.+|...  +..+++|+.|++++|+++.++.. +. .+++|+.+++++|++.
T Consensus       545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV--FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH--hCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            88888777777777778888888888888777653  56777888888888888766654 44 5677888888888776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4.1e-22  Score=173.33  Aligned_cols=193  Identities=18%  Similarity=0.293  Sum_probs=157.0

Q ss_pred             ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      ...++.|+.++++.+.++.                 +| .+..+++|++|++++|++..+              ++  +.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-----------------l~-~~~~l~~L~~L~L~~n~i~~~--------------~~--~~   82 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-----------------IE-GVQYLNNLIGLELKDNQITDL--------------AP--LK   82 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCC--------------GG--GT
T ss_pred             HHHcCCcCEEEeeCCCccC-----------------ch-hhhccCCCCEEEccCCcCCCC--------------hh--Hc
Confidence            3456778888887777754                 44 467788888888888877743              22  66


Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccC
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRH  195 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~  195 (288)
                      .+++|++|++++|+++.++ .+..+++|+.|++++|.++.++. +..+++|++|++++|+++        .+|++|++++
T Consensus        83 ~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  160 (308)
T 1h6u_A           83 NLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN  160 (308)
T ss_dssp             TCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred             cCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccC
Confidence            7888888888888888775 57778888888888888887764 778888888888888876        4788889999


Q ss_pred             CCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538        196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       196 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      |.++.+++  +..+++|+.|++++|.++.++.    +..+++|+.|++++|+++.+++ +..+++|+.|++++|+++..|
T Consensus       161 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          161 AQVSDLTP--LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred             CcCCCChh--hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCC
Confidence            99998877  6678999999999999998886    7789999999999999998874 889999999999999998766


Q ss_pred             cccc
Q psy10538        276 SSMV  279 (288)
Q Consensus       276 ~~~~  279 (288)
                      ....
T Consensus       234 ~~~~  237 (308)
T 1h6u_A          234 VFYN  237 (308)
T ss_dssp             EECC
T ss_pred             eeec
Confidence            6443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.7e-22  Score=168.02  Aligned_cols=181  Identities=14%  Similarity=0.258  Sum_probs=150.2

Q ss_pred             CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCC-CcccCc-ccccCCCccEE
Q psy10538         77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANH-IRDLPK-NFFRLNRLRKL  154 (288)
Q Consensus        77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~-~~~~l~~L~~L  154 (288)
                      ++.+|. +  ...++++++++|+++              .+++..|..+++|++|++++|+ ++.++. .|..+++|++|
T Consensus        23 l~~ip~-~--~~~l~~L~l~~n~l~--------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L   85 (239)
T 2xwt_C           23 IQRIPS-L--PPSTQTLKLIETHLR--------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI   85 (239)
T ss_dssp             CSSCCC-C--CTTCCEEEEESCCCS--------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred             ccccCC-C--CCcccEEEEeCCcce--------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence            456776 3  337889999888776              5566678888899999999997 887765 67788899999


Q ss_pred             ecCC-CCCcccCc-cccCCCCCcEEEccCCCCCC--------Ccc---EEEccCC-CCCCCChHHHhcCCCcc-eeeccc
Q psy10538        155 GLSD-NEIHRLPP-EIQNFENLVELDVSRNGCNR--------QVE---YVDKRHC-SLPNVPEDVLRYFRSLE-ELLLDA  219 (288)
Q Consensus       155 ~l~~-n~l~~l~~-~l~~~~~L~~L~l~~n~~~~--------~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~  219 (288)
                      ++++ |.++.++. .+..+++|++|++++|++++        +++   +|++++| .++.+++..+..+++|+ .+++++
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence            9998 88888764 57788889999999887652        555   9999999 99999988888899999 999999


Q ss_pred             CcccccCCccccccCCCCccEEEccCCC-CccCCc-cccCC-CCCcEEECcCCCCCCcCcc
Q psy10538        220 NHIRDLPKNYLDFFRLNRLRKLGLSDNE-IHRLPP-EIQNF-ENLVELDVSRNAPSNVDSS  277 (288)
Q Consensus       220 n~l~~l~~~~~~~~~l~~L~~L~l~~n~-l~~~p~-~l~~~-~~L~~L~L~~N~l~~ip~~  277 (288)
                      |.++.+|..   ....++|+.|++++|+ ++.+|. .+.++ ++|+.|++++|+++.+|..
T Consensus       166 n~l~~i~~~---~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          166 NGFTSVQGY---AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             CCCCEECTT---TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             CCCcccCHh---hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            999999986   3444899999999995 998865 57888 9999999999999999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=8.3e-22  Score=168.49  Aligned_cols=189  Identities=19%  Similarity=0.232  Sum_probs=155.8

Q ss_pred             cceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cc
Q psy10538         67 NEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KN  144 (288)
Q Consensus        67 ~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~  144 (288)
                      ...+++.++.++.+++ .+..+++|+++++++|++.              .+++..|..+++|++|++++|.++.++ ..
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--------------ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            3456667777677765 6777888888888887766              556667888999999999999999765 57


Q ss_pred             cccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCc
Q psy10538        145 FFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSL  212 (288)
Q Consensus       145 ~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L  212 (288)
                      +..+++|++|++++|.+..++. .+..+++|++|++++|.++           .+|++|++++|+++.+++..+..++++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            8889999999999999997755 5888899999999999875           378999999999998877666656666


Q ss_pred             c----eeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538        213 E----ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS  272 (288)
Q Consensus       213 ~----~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~  272 (288)
                      +    .+++++|.++.++..   .....+|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus       176 ~~l~l~L~ls~n~l~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQPG---AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TTCCEEEECCSSCCCEECTT---SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccceeeecCCCcccccCcc---ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            6    899999999988876   55566899999999999988765 588999999999999988

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=3.8e-22  Score=184.09  Aligned_cols=196  Identities=19%  Similarity=0.214  Sum_probs=91.0

Q ss_pred             CCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538         46 NASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF  125 (288)
Q Consensus        46 ~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l  125 (288)
                      ..++|+.++++.+.++..                .|..+..+++|+.|++++|.+...              ++  +..+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~--l~~l   79 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQI----------------SAADLAPFTKLELLNLSSNVLYET--------------LD--LESL   79 (487)
T ss_dssp             TGGGCCEEECCSSCCCCC----------------CGGGGTTCTTCCEEECTTSCCEEE--------------EE--CTTC
T ss_pred             cCCCccEEEeeCCcCCCC----------------CHHHHhCCCCCCEEEeeCCCCCCC--------------cc--cccC
Confidence            445677777777777551                123455566666666666655421              11  3444


Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEccC
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRH  195 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~  195 (288)
                      ++|++|++++|.|+.+|.    .++|+.|++++|.++.++..  .+++|++|++++|.++          .+|++|++++
T Consensus        80 ~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (487)
T 3oja_A           80 STLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL  153 (487)
T ss_dssp             TTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred             CCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence            455555555554444332    14444444444444433221  2234444444444433          1344444444


Q ss_pred             CCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCc
Q psy10538        196 CSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       196 n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~i  274 (288)
                      |.++..++..+ ..+++|+.|++++|.++.+|.    ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.++.+
T Consensus       154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l  229 (487)
T 3oja_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI  229 (487)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE
T ss_pred             CCCCCcChHHHhhhCCcccEEecCCCccccccc----cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc
Confidence            44444332222 134444444444444444433    2234444444444444444444444444444444444444444


Q ss_pred             Ccccccccc
Q psy10538        275 DSSMVYLKL  283 (288)
Q Consensus       275 p~~~~~l~~  283 (288)
                      |..+..++.
T Consensus       230 p~~l~~l~~  238 (487)
T 3oja_A          230 EKALRFSQN  238 (487)
T ss_dssp             CTTCCCCTT
T ss_pred             chhhccCCC
Confidence            444444333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=6.2e-23  Score=179.15  Aligned_cols=199  Identities=19%  Similarity=0.204  Sum_probs=124.1

Q ss_pred             cCCccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      ..+++|+.++++.+.++.                 ++ ..+..+++|+.|++++|++..              +.+  +.
T Consensus        31 ~~~~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~--~~   77 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQ-----------------ISAADLAPFTKLELLNLSSNVLYE--------------TLD--LE   77 (317)
T ss_dssp             TTGGGCSEEECTTSCCCC-----------------CCHHHHTTCTTCCEEECTTSCCEE--------------EEE--ET
T ss_pred             ccCCCCCEEECcCCccCc-----------------CCHHHhhCCCcCCEEECCCCcCCc--------------chh--hh
Confidence            345567777777776654                 22 345666667777777766552              111  55


Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEc
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDK  193 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l  193 (288)
                      .+++|++|++++|.++.++.    .++|++|++++|.++.++..  .+++|++|++++|+++          .+|++|++
T Consensus        78 ~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             TCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             hcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            66677777777776665542    36667777777766655432  2456677777777655          25677777


Q ss_pred             cCCCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC
Q psy10538        194 RHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       194 ~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      ++|.++.+++..+ ..+++|+.|++++|.++.++.    ...+++|+.|++++|+++.+|..+..+++|+.|++++|+++
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence            7777666544333 345667777777777766654    33466677777777777766666666667777777777777


Q ss_pred             CcCccccccccccC
Q psy10538        273 NVDSSMVYLKLGRK  286 (288)
Q Consensus       273 ~ip~~~~~l~~~~~  286 (288)
                      .+|..+..++.++.
T Consensus       228 ~l~~~~~~l~~L~~  241 (317)
T 3o53_A          228 LIEKALRFSQNLEH  241 (317)
T ss_dssp             EECTTCCCCTTCCE
T ss_pred             chhhHhhcCCCCCE
Confidence            66666665555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=3e-21  Score=164.98  Aligned_cols=194  Identities=21%  Similarity=0.215  Sum_probs=155.2

Q ss_pred             cCccccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCCc-cccCCCCccEEEcCCCC
Q psy10538         21 ISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESR   99 (288)
Q Consensus        21 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~   99 (288)
                      +|.++..+.++...++.... ..+.+++.|+.++++.+.++.                 +++ .+..+++|++|++++|+
T Consensus        26 l~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-----------------IEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCE-----------------ECTTTTTTCTTCCEEECTTCC
T ss_pred             CCCCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCc-----------------cCHHHccCCcCCCEEECCCCc
Confidence            44445555554444444332 345566667777776666644                 443 57889999999999988


Q ss_pred             ccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcc--cCccccCCCCCcE
Q psy10538        100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVE  176 (288)
Q Consensus       100 l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~  176 (288)
                      +.              .+++..|..+++|++|++++|.++.++. .+..+++|++|++++|.++.  +|..+..+++|++
T Consensus        88 l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           88 IQ--------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             CC--------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             cC--------------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            77              5566778899999999999999998765 78889999999999999986  6888999999999


Q ss_pred             EEccCCCCCC----------Ccc----EEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538        177 LDVSRNGCNR----------QVE----YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG  242 (288)
Q Consensus       177 L~l~~n~~~~----------~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~  242 (288)
                      |++++|++++          +++    +|++++|.++.+++..+. ..+|+.|++++|.++.+|...  +..+++|+.|+
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~  230 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI--FDRLTSLQKIW  230 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTT--TTTCCSCCEEE
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhH--hcccccccEEE
Confidence            9999998873          444    899999999998887776 458999999999999998763  67899999999


Q ss_pred             ccCCCCc
Q psy10538        243 LSDNEIH  249 (288)
Q Consensus       243 l~~n~l~  249 (288)
                      +++|+++
T Consensus       231 l~~N~~~  237 (276)
T 2z62_A          231 LHTNPWD  237 (276)
T ss_dssp             CCSSCBC
T ss_pred             ccCCccc
Confidence            9999988

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.3e-21  Score=168.68  Aligned_cols=183  Identities=23%  Similarity=0.318  Sum_probs=160.5

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCc
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~  162 (288)
                      +..+++++++++++++++.+|.              ..   .+++++|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~--------------~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~   68 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP--------------DL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT   68 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS--------------CC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred             ccccCCccEEECCCCCCCcCCC--------------CC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC
Confidence            6678899999999998885432              21   25899999999999976 457889999999999999999


Q ss_pred             ccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcccccc
Q psy10538        163 RLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF  233 (288)
Q Consensus       163 ~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~  233 (288)
                      .++.. +.+++|++|++++|+++         .+|++|++++|+++.+++..+..+++|+.|++++|.++.+|...  +.
T Consensus        69 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~  145 (290)
T 1p9a_G           69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LT  145 (290)
T ss_dssp             EEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TT
T ss_pred             cccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh--cc
Confidence            88664 67899999999999876         48999999999999999888888999999999999999998763  67


Q ss_pred             CCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCcCccccccccccC
Q psy10538        234 RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKLGRK  286 (288)
Q Consensus       234 ~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~  286 (288)
                      .+++|+.|++++|+++.+|.. +..+++|+.|++++|+++.+|..+.....++.
T Consensus       146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF  199 (290)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred             cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCe
Confidence            899999999999999998875 57899999999999999999999888776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=4.2e-21  Score=180.04  Aligned_cols=115  Identities=15%  Similarity=0.118  Sum_probs=89.0

Q ss_pred             cCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCCh--HHHhcCCCcceeecccCcccc-cCCccccccCC
Q psy10538        169 QNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPE--DVLRYFRSLEELLLDANHIRD-LPKNYLDFFRL  235 (288)
Q Consensus       169 ~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~-l~~~~~~~~~l  235 (288)
                      ..+++|++|++++|.++          .+|++|++++|+++.++.  ..+..+++|+.|++++|.++. +|...  +..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC--CCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh--hcCc
Confidence            45677888888888765          278888888888887664  445667888888888888886 77653  6678


Q ss_pred             CCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        236 NRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       236 ~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++.+|..++.++.++.+
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L  478 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQEL  478 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEE
T ss_pred             ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEE
Confidence            88888888888886 4444332  68999999999999999988888777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.2e-21  Score=161.98  Aligned_cols=166  Identities=27%  Similarity=0.394  Sum_probs=138.7

Q ss_pred             CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEe
Q psy10538         77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLG  155 (288)
Q Consensus        77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~  155 (288)
                      +..+|..+.  +.++.+++++|++.              .+.+..|..+++|++|++++|.++.++. .+..+++|++|+
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLA--------------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCC--------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccCCCCC--CCCCEEEccCCCcC--------------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            345776654  58999999998877              4556678889999999999999997754 578899999999


Q ss_pred             cCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccC
Q psy10538        156 LSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR  234 (288)
Q Consensus       156 l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~  234 (288)
                      +++|.++.++.. +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.+|...  ++.
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~  153 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGN--------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--FDK  153 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTT
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCC--------------cCCCcChhHhccCCcccEEECcCCcCCccCHHH--cCc
Confidence            999999988654 677888888888888              788888887778899999999999999888742  778


Q ss_pred             CCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCc
Q psy10538        235 LNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       235 l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~i  274 (288)
                      +++|++|++++|+++.+|. .+..+++|+.|++++|++..-
T Consensus       154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8999999999999997775 578889999999999998743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=6.8e-21  Score=174.36  Aligned_cols=200  Identities=17%  Similarity=0.206  Sum_probs=144.6

Q ss_pred             cccCCccccEEeeCCCccccccCcc-----ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceec
Q psy10538         43 WSRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLY  117 (288)
Q Consensus        43 ~~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~  117 (288)
                      .+.+++.|+.++++.+.+++++...     +.+++.++.++.+|  ++.+++|++|++++|++..+              
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~--------------  100 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL--------------  100 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC--------------
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee--------------
Confidence            3445667777777777665532111     23555555555564  66777777777777776632              


Q ss_pred             chHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCcc
Q psy10538        118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVE  189 (288)
Q Consensus       118 ~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~  189 (288)
                      +   +..+++|++|++++|+++.+|  +..+++|++|++++|.++.++  ++.+++|++|++++|+..        .+|+
T Consensus       101 ~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~  173 (457)
T 3bz5_A          101 D---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLT  173 (457)
T ss_dssp             C---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred             e---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCC
Confidence            1   566788888888888888775  677888888888888888764  667788888888888322        4788


Q ss_pred             EEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCC
Q psy10538        190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN  269 (288)
Q Consensus       190 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N  269 (288)
                      +|++++|+++.++   +..+++|+.|++++|.++.++     ++.+++|+.|++++|+++.+|  ++.+++|+.|++++|
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence            8888888888776   445778888888888888763     667788888888888888776  677888888888888


Q ss_pred             CCCCcC
Q psy10538        270 APSNVD  275 (288)
Q Consensus       270 ~l~~ip  275 (288)
                      +++.+|
T Consensus       244 ~l~~~~  249 (457)
T 3bz5_A          244 PLTELD  249 (457)
T ss_dssp             CCSCCC
T ss_pred             cCCCcC
Confidence            887665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=189.82  Aligned_cols=256  Identities=16%  Similarity=0.153  Sum_probs=128.6

Q ss_pred             hhhhhhhccccccccccCcccccc----ccCCCCc--ccccccccccCCccccEEeeCCCccccccC--c-----cceEE
Q psy10538          5 SKFFNKELSSHLFRGKISEDTINS----LCDGGDV--TSHTSRSWSRNASSIREYLCHKTYLAAEEA--F-----NEWFH   71 (288)
Q Consensus         5 ~~~~~~~ls~~~~~g~~p~~~~~~----~~~~~~~--~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~--~-----~~~l~   71 (288)
                      +.....+|++|.+.+..|..+..+    .++....  ........+.++++|+.++++.+.++.+..  .     .+.++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            344556777777777666554443    2222111  111112456677777777777777665311  0     11255


Q ss_pred             ecCCCCCC-CCcc--ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Cccccc
Q psy10538         72 YYNSTKPR-GPPE--INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR  147 (288)
Q Consensus        72 ~~~~~~~~-lp~~--l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~  147 (288)
                      +.++.+.. +|+.  +..+++|++|++++|.+..+.             ++..|.++++|++|++++|.++.+ +..+..
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-------------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccc-------------cchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            55555443 3333  666666677777666665321             113345555555555555555422 223322


Q ss_pred             C--CC------------------------------ccEEecCCCCCc-ccCccccC------------------------
Q psy10538        148 L--NR------------------------------LRKLGLSDNEIH-RLPPEIQN------------------------  170 (288)
Q Consensus       148 l--~~------------------------------L~~L~l~~n~l~-~l~~~l~~------------------------  170 (288)
                      +  ++                              |+.|++++|.++ .++..+..                        
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            2  23                              555555555433 11111110                        


Q ss_pred             --------------CCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccC
Q psy10538        171 --------------FENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP  226 (288)
Q Consensus       171 --------------~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~  226 (288)
                                    .++|++|++++|.+.          .+|++|++++|.++.+++..+..+++|+.|++++|.++.++
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence                          134555555555443          25555555555555555554555555566666655555442


Q ss_pred             CccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcC
Q psy10538        227 KNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      ...  +..+++|+.|++++|+++.++. .+..+++|+.|++++|.++.++
T Consensus       331 ~~~--~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          331 SSN--FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             SCS--CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             HHH--hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            221  5555556666666665554443 3555556666666666555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=9e-21  Score=179.21  Aligned_cols=244  Identities=16%  Similarity=0.177  Sum_probs=137.1

Q ss_pred             hhhccccccccccCc----cccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCCC
Q psy10538          9 NKELSSHLFRGKISE----DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGP   81 (288)
Q Consensus         9 ~~~ls~~~~~g~~p~----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp   81 (288)
                      ..+++++++. .+|.    ++..+.+....++..+.     .+++|+.++++.+.++.++.   ....+++.++.++.+|
T Consensus        44 ~L~ls~n~L~-~lp~~l~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~  117 (622)
T 3g06_A           44 VLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP  117 (622)
T ss_dssp             EEECCSSCCS-CCCSCCCTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCC
T ss_pred             EEEecCCCcC-ccChhhCCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCC
Confidence            3456666655 3444    33333444333433322     45667777777776655332   1123555566666665


Q ss_pred             ccccCCCCccEEEcCCCCccchhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEe
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG  155 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~  155 (288)
                      .   .+++|+.|++++|++..++..+      ....|.+..++.    .+++|+.|++++|.++.+|   ..+++|+.|+
T Consensus       118 ~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~  187 (622)
T 3g06_A          118 A---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP---MLPSGLQELS  187 (622)
T ss_dssp             C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred             C---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc---ccCCCCcEEE
Confidence            5   3455666666666665543221      011222222221    2234555555555555444   2245666666


Q ss_pred             cCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcc
Q psy10538        156 LSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY  229 (288)
Q Consensus       156 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~  229 (288)
                      +++|.++.+|..   .++|+.|++++|.++      ++|++|++++|.++.+|    ..+++|+.|++++|.++.+|.  
T Consensus       188 Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~--  258 (622)
T 3g06_A          188 VSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM--  258 (622)
T ss_dssp             CCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred             CCCCCCCCCCCc---cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc--
Confidence            666666665542   345666666666554      35777777777777666    235667777777777776664  


Q ss_pred             ccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccc
Q psy10538        230 LDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYL  281 (288)
Q Consensus       230 ~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l  281 (288)
                          .+++|+.|++++|+|+.+|..+.++++|+.|++++|+++ .+|..+..+
T Consensus       259 ----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          259 ----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             ----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             ----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence                246677777777777777777777777777777777776 444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=8.8e-21  Score=161.75  Aligned_cols=179  Identities=25%  Similarity=0.365  Sum_probs=154.4

Q ss_pred             CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc
Q psy10538         89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE  167 (288)
Q Consensus        89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~  167 (288)
                      ..+.+++++++++.+|..                 -.+++++|++++|.++.++. .+..+++|++|++++|.++.+|..
T Consensus        17 ~~~~l~~~~~~l~~ip~~-----------------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~   79 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-----------------IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG   79 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-----------------CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCEEEccCCCCCccCCC-----------------CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence            467889999888854321                 12579999999999998875 788999999999999999988776


Q ss_pred             -ccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCC
Q psy10538        168 -IQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN  236 (288)
Q Consensus       168 -l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~  236 (288)
                       +..+++|++|++++|.++          .+|++|++++|.++.+++..+..+++|+.|++++|.++.+|...  +..++
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~  157 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV--FDKLT  157 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCT
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH--ccCCc
Confidence             578999999999999876          38999999999999999988888999999999999999998763  78899


Q ss_pred             CccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538        237 RLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK  286 (288)
Q Consensus       237 ~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~  286 (288)
                      +|+.|++++|+++.+|. .+..+++|+.|++++|+++.+|.. +..++.++.
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM  209 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence            99999999999998876 488899999999999999988875 555666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=7.2e-22  Score=182.27  Aligned_cols=216  Identities=15%  Similarity=0.109  Sum_probs=153.7

Q ss_pred             cccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccch
Q psy10538         24 DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQY  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l  103 (288)
                      ++..+.++...++... ...+.+++.|+.++++.+.+++                 .++ ++.+++|++|++++|.+..+
T Consensus        35 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-----------------~~~-l~~l~~L~~L~Ls~N~l~~l   95 (487)
T 3oja_A           35 NVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE-----------------TLD-LESLSTLRTLDLNNNYVQEL   95 (487)
T ss_dssp             GCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEE-----------------EEE-CTTCTTCCEEECCSSEEEEE
T ss_pred             CccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCC-----------------Ccc-cccCCCCCEEEecCCcCCCC
Confidence            3444444444444332 2456778899999999988865                 222 66788888888888877743


Q ss_pred             hhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCC
Q psy10538        104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRN  182 (288)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n  182 (288)
                      +                   ..++|++|++++|.++.++..  .+++|+.|++++|.++.+ |..++.+++|++|++++|
T Consensus        96 ~-------------------~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           96 L-------------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             E-------------------ECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred             C-------------------CCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence            2                   125677777777777765442  356677777777777654 444666677777777777


Q ss_pred             CCC-----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC
Q psy10538        183 GCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL  251 (288)
Q Consensus       183 ~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~  251 (288)
                      .++           .+|++|++++|.++.+++..  .+++|+.|++++|.++.+|+.   +..+++|+.|++++|.++.+
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~l  229 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLI  229 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEE
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCccccccccc--cCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcCccc
Confidence            654           36777777777888765432  478899999999999988877   77888999999999999988


Q ss_pred             CccccCCCCCcEEECcCCCCC--CcCccccccccc
Q psy10538        252 PPEIQNFENLVELDVSRNAPS--NVDSSMVYLKLG  284 (288)
Q Consensus       252 p~~l~~~~~L~~L~L~~N~l~--~ip~~~~~l~~~  284 (288)
                      |..+..+++|+.|++++|++.  .+|..+..++.+
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            888888889999999999887  666666665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=7.4e-21  Score=176.54  Aligned_cols=105  Identities=19%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             ccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCc
Q psy10538         48 SSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFR  126 (288)
Q Consensus        48 ~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~  126 (288)
                      +.++.++++.+.++.                 ++ ..+..+++|++|++++|++.              .+.+..|..++
T Consensus        21 ~~L~~L~Ls~n~i~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~   69 (520)
T 2z7x_B           21 QKTTILNISQNYISE-----------------LWTSDILSLSKLRILIISHNRIQ--------------YLDISVFKFNQ   69 (520)
T ss_dssp             TTCSEEECCSSCCCC-----------------CCHHHHTTCTTCCEEECCSSCCC--------------EEEGGGGTTCT
T ss_pred             ccccEEECCCCcccc-----------------cChhhccccccccEEecCCCccC--------------CcChHHhhccc
Confidence            566667766666654                 33 24555555555555555544              33344455555


Q ss_pred             CCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc--cCccccCCCCCcEEEccCCCCC
Q psy10538        127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVELDVSRNGCN  185 (288)
Q Consensus       127 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~l~~n~~~  185 (288)
                      +|++|++++|+++.+|..  .+++|++|++++|.++.  +|..++.+++|++|++++|.++
T Consensus        70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            555555555555555444  45555555555555543  3444555555555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4e-21  Score=160.83  Aligned_cols=185  Identities=15%  Similarity=0.175  Sum_probs=153.0

Q ss_pred             cccEEeeCCCccccccCccceEEecCCCCCCCCc-cccCCCCccEEEcCCCC-ccchhhHHHhhcCCceecchHHhhcCc
Q psy10538         49 SIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESR-LQQYEEVVAEWTSKLKLYSKDVLRYFR  126 (288)
Q Consensus        49 ~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~-l~~l~~~~~~~~~~l~~~~~~~~~~l~  126 (288)
                      .++.++++.+.++.                 +|+ .+..+++|+.+++++|+ ++              .+++..|.+++
T Consensus        32 ~l~~L~l~~n~l~~-----------------i~~~~~~~l~~L~~L~l~~n~~l~--------------~i~~~~f~~l~   80 (239)
T 2xwt_C           32 STQTLKLIETHLRT-----------------IPSHAFSNLPNISRIYVSIDVTLQ--------------QLESHSFYNLS   80 (239)
T ss_dssp             TCCEEEEESCCCSE-----------------ECTTTTTTCTTCCEEEEECCSSCC--------------EECTTTEESCT
T ss_pred             cccEEEEeCCcceE-----------------ECHHHccCCCCCcEEeCCCCCCcc--------------eeCHhHcCCCc
Confidence            45566666665544                 554 57789999999999985 66              56666788899


Q ss_pred             CCcEEEccc-CCCcccCc-ccccCCCccEEecCCCCCcccCccccCCCCCc---EEEccCC-CCC----------CCcc-
Q psy10538        127 SLEELLLDA-NHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV---ELDVSRN-GCN----------RQVE-  189 (288)
Q Consensus       127 ~L~~L~l~~-n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~---~L~l~~n-~~~----------~~L~-  189 (288)
                      +|++|++++ |+++.+|. .|..+++|++|++++|.++.+|. +..+++|+   +|++++| +++          .+|+ 
T Consensus        81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~  159 (239)
T 2xwt_C           81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL  159 (239)
T ss_dssp             TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred             CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence            999999998 89998764 67889999999999999998886 77777777   9999999 664          3788 


Q ss_pred             EEEccCCCCCCCChHHHhcCCCcceeecccCc-ccccCCccccccCC-CCccEEEccCCCCccCCccccCCCCCcEEECc
Q psy10538        190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRL-NRLRKLGLSDNEIHRLPPEIQNFENLVELDVS  267 (288)
Q Consensus       190 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l-~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~  267 (288)
                      +|++++|+++.++...+.. ++|+.|++++|+ ++.+|...  +..+ ++|+.|++++|+++.+|..  .+++|+.|+++
T Consensus       160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~--~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTT--TTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred             EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHH--hhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence            9999999999999888775 899999999995 99987653  7788 9999999999999999875  78899999998


Q ss_pred             CCC
Q psy10538        268 RNA  270 (288)
Q Consensus       268 ~N~  270 (288)
                      ++.
T Consensus       235 ~~~  237 (239)
T 2xwt_C          235 NTW  237 (239)
T ss_dssp             TC-
T ss_pred             Ccc
Confidence            763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=3.9e-20  Score=174.87  Aligned_cols=233  Identities=20%  Similarity=0.197  Sum_probs=174.8

Q ss_pred             ccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCCCccccCCCCccEEEcCCCCcc
Q psy10538         25 TINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQ  101 (288)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~  101 (288)
                      +..+.|....++..+. ...   ++|+.++++.+.++.++.   ....+++.++.++.+|.   .+++|++|++++|.+.
T Consensus        42 l~~L~ls~n~L~~lp~-~l~---~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           42 NAVLNVGESGLTTLPD-CLP---AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CCEEECCSSCCSCCCS-CCC---TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred             CcEEEecCCCcCccCh-hhC---CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence            3444555555554443 122   678888988888876544   22457888888888887   5788899999999888


Q ss_pred             chhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCc
Q psy10538        102 QYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV  175 (288)
Q Consensus       102 ~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~  175 (288)
                      .++...      ....|.+..++.    .+++|++|++++|+++.+|..   +++|+.|++++|.++.+|   ..+++|+
T Consensus       115 ~l~~~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~  184 (622)
T 3g06_A          115 HLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQ  184 (622)
T ss_dssp             CCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCC
T ss_pred             CCCCCCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCc
Confidence            766521      122344444443    246777788888877777643   466777788888877777   3457889


Q ss_pred             EEEccCCCCC------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        176 ELDVSRNGCN------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       176 ~L~l~~n~~~------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      .|++++|+++      ++|+.|++++|.++.++.    .+++|+.|++++|.++.+|..      +++|+.|++++|+|+
T Consensus       185 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp~~------l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLT  254 (622)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCS
T ss_pred             EEECCCCCCCCCCCccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCCCC------CCcCcEEECCCCCCC
Confidence            9999999876      378999999999998875    257899999999999998843      478999999999999


Q ss_pred             cCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        250 RLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       250 ~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      .+|.   .+++|+.|++++|+++.+|..+..++.++.+
T Consensus       255 ~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          255 SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV  289 (622)
T ss_dssp             CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred             cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence            9987   6789999999999999999999998887754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.5e-20  Score=163.39  Aligned_cols=178  Identities=20%  Similarity=0.308  Sum_probs=156.7

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR  163 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~  163 (288)
                      ...++.++++++++|.+..++                .+..+++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~----------------~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE----------------GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HHHcCCcCEEEeeCCCccCch----------------hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence            445778999999999887532                26678999999999999999887 8899999999999999998


Q ss_pred             cCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC
Q psy10538        164 LPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL  235 (288)
Q Consensus       164 l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l  235 (288)
                      ++ .+..+++|++|++++|+++        .+|++|++++|.++.+++  +..+++|+.|++++|.++.++.    +..+
T Consensus       100 ~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l  172 (308)
T 1h6u_A          100 VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANL  172 (308)
T ss_dssp             CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTC
T ss_pred             ch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCC
Confidence            75 5888999999999999887        489999999999999877  6678999999999999999876    7889


Q ss_pred             CCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       236 ~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      ++|+.|++++|+++.++. +..+++|+.|++++|+++.+++ +..++.++.+
T Consensus       173 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L  222 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIV  222 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEE
T ss_pred             CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEE
Confidence            999999999999998875 8899999999999999998885 6777766643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=5.8e-20  Score=173.66  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             EEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecchHHhhcCcCCcEEEcccCCC
Q psy10538         70 FHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYSKDVLRYFRSLEELLLDANHI  138 (288)
Q Consensus        70 l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i  138 (288)
                      +++.++.+..+|+ .+..+++|++|+|++|+++.++....          ...+.+..+++..|.++++|++|++++|.+
T Consensus        81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A           81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            3344444444543 35556666666666666665543211          223455566777788889999999999998


Q ss_pred             cc--cCcccccCCCccEEecCCCCCcc
Q psy10538        139 RD--LPKNFFRLNRLRKLGLSDNEIHR  163 (288)
Q Consensus       139 ~~--lp~~~~~l~~L~~L~l~~n~l~~  163 (288)
                      +.  +|..+..+++|++|++++|.++.
T Consensus       161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          161 QSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ccCCCchhhccchhhhhhcccCccccc
Confidence            74  46777888899999888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=3.3e-20  Score=158.35  Aligned_cols=179  Identities=24%  Similarity=0.407  Sum_probs=117.5

Q ss_pred             ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      ...+..|+.++++.+.++.                 ++ .+..+++|+++++++|.+..+                ..+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-----------------~~-~l~~l~~L~~L~l~~n~l~~~----------------~~l~   82 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVRYLALGGNKLHDI----------------SALK   82 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECTTSCCCCC----------------GGGT
T ss_pred             cccccceeeeeeCCCCccc-----------------cc-ccccCCCCcEEECCCCCCCCc----------------hhhc
Confidence            4456677777777776644                 33 367788889999988887742                2366


Q ss_pred             cCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538        124 YFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV  201 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~  201 (288)
                      .+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|              .++.+
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~  148 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN--------------QLQSL  148 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCC
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC--------------ccCcc
Confidence            78888899999988887765 467788899999998888877654 677788888888888              44455


Q ss_pred             ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS  272 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~  272 (288)
                      ++..+..+++|+.|++++|.++.++...  ++.+++|+.|++++|+++.+++. +..+++|+.|++++|++.
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHHHhccCccCCEEECCCCCcCccCHHH--hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            5544444555555555555555554431  34555555555555555544432 455555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=6.5e-21  Score=162.77  Aligned_cols=223  Identities=24%  Similarity=0.320  Sum_probs=173.9

Q ss_pred             hhhhhhhhccccccccccCc----cccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCC
Q psy10538          4 LSKFFNKELSSHLFRGKISE----DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR   79 (288)
Q Consensus         4 ~~~~~~~~ls~~~~~g~~p~----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~   79 (288)
                      +.++...++..+.+...++.    .+..+.+....++.   ...+..+++|+.++++.+.++.                 
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~-----------------   77 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHD-----------------   77 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCC-----------------
T ss_pred             HHHHHHHHhcCcccccccccccccceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCC-----------------
Confidence            34555566666666554432    22333333333322   2346778899999999888755                 


Q ss_pred             CCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCC
Q psy10538         80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSD  158 (288)
Q Consensus        80 lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~  158 (288)
                      + +.+..+++|++|++++|++.              .+++..|..+++|++|++++|+++.++. .+..+++|++|++++
T Consensus        78 ~-~~l~~l~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           78 I-SALKELTNLTYLILTGNQLQ--------------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             C-GGGTTCTTCCEEECTTSCCC--------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             c-hhhcCCCCCCEEECCCCccC--------------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            2 25778999999999998877              4566668899999999999999998766 478899999999999


Q ss_pred             CCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCC
Q psy10538        159 NEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR  237 (288)
Q Consensus       159 n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~  237 (288)
                      |.++.+++. +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.++...  ++.+++
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~  206 (272)
T 3rfs_A          143 NQLQSLPKGVFDKLTNLTELDLSYN--------------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTS  206 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTT
T ss_pred             CccCccCHHHhccCccCCEEECCCC--------------CcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcC
Confidence            999988665 577888888888888              788888887888999999999999999887753  688999


Q ss_pred             ccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccccc
Q psy10538        238 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKL  283 (288)
Q Consensus       238 L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~  283 (288)
                      |+.|++++|.+.      +.+++|+.++++.|.++ .+|.+++.+..
T Consensus       207 L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          207 LQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            999999999876      34667899999999988 88888887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=164.46  Aligned_cols=188  Identities=20%  Similarity=0.182  Sum_probs=130.1

Q ss_pred             eEEecCCCCC-CCCccc--cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cc
Q psy10538         69 WFHYYNSTKP-RGPPEI--NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KN  144 (288)
Q Consensus        69 ~l~~~~~~~~-~lp~~l--~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~  144 (288)
                      .+.+.++.+. ..|..+  ..+++|++|++++|++....          ..++...+..+++|++|++++|+++.++ ..
T Consensus        95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~----------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  164 (310)
T 4glp_A           95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR----------SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ  164 (310)
T ss_dssp             EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT----------SSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred             EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh----------hhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence            3555555544 455555  77888999999999887411          1112233457889999999999998665 57


Q ss_pred             cccCCCccEEecCCCCCcc---cC--ccccCCCCCcEEEccCCCCC-------------CCccEEEccCCCCCCC-ChHH
Q psy10538        145 FFRLNRLRKLGLSDNEIHR---LP--PEIQNFENLVELDVSRNGCN-------------RQVEYVDKRHCSLPNV-PEDV  205 (288)
Q Consensus       145 ~~~l~~L~~L~l~~n~l~~---l~--~~l~~~~~L~~L~l~~n~~~-------------~~L~~L~l~~n~l~~~-~~~~  205 (288)
                      +..+++|++|++++|.+..   ++  ..+..+++|++|++++|+++             .+|++|++++|+++.. |+..
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            7788999999999998652   32  22467788888999888775             3677777777777765 3322


Q ss_pred             HhcC---CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538        206 LRYF---RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       206 ~~~~---~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                       ..+   ++|+.|++++|+++.+|..   +.  ++|+.|++++|+++.+|. +..+++|+.|++++|++++
T Consensus       245 -~~~~~~~~L~~L~Ls~N~l~~lp~~---~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          245 -PRCMWSSALNSLNLSFAGLEQVPKG---LP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -SSCCCCTTCCCEECCSSCCCSCCSC---CC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             -HhccCcCcCCEEECCCCCCCchhhh---hc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence             223   5777777777777777765   32  677777777777776654 5667777777777777753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=4.2e-20  Score=181.08  Aligned_cols=272  Identities=15%  Similarity=0.077  Sum_probs=200.2

Q ss_pred             hhhhhhhhccccccccccC-cccccc------ccCCCCcccccccccccCCccccEEeeCCCccccc--c-----C--cc
Q psy10538          4 LSKFFNKELSSHLFRGKIS-EDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAE--E-----A--FN   67 (288)
Q Consensus         4 ~~~~~~~~ls~~~~~g~~p-~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l--~-----~--~~   67 (288)
                      ++++...+|++|.+.+.++ ..+.++      .+....+.... ..++.++++|+.++++.+.++..  +     .  ..
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            4566678888888888774 333333      33323333332 36778899999999998888651  1     1  12


Q ss_pred             ceEEecCCCCCCCC--ccccCCCCccEEEcCCCCccchhhH-HH-----------hhcCCceecchHHhhcCc------C
Q psy10538         68 EWFHYYNSTKPRGP--PEINEDAAYSERVLHESRLQQYEEV-VA-----------EWTSKLKLYSKDVLRYFR------S  127 (288)
Q Consensus        68 ~~l~~~~~~~~~lp--~~l~~l~~l~~l~l~~n~l~~l~~~-~~-----------~~~~~l~~~~~~~~~~l~------~  127 (288)
                      +.+++.++.+..++  +.++.+++|++|++++|.+...... +.           ...+.+....+..+..++      .
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            34777777777664  4689999999999999998764221 11           112333333333333333      4


Q ss_pred             CcEEEcccCCCc-ccCccccc--------------------------------------CCCccEEecCCCCCccc-Ccc
Q psy10538        128 LEELLLDANHIR-DLPKNFFR--------------------------------------LNRLRKLGLSDNEIHRL-PPE  167 (288)
Q Consensus       128 L~~L~l~~n~i~-~lp~~~~~--------------------------------------l~~L~~L~l~~n~l~~l-~~~  167 (288)
                      |++|++++|.++ .++..+..                                      .++++.|++++|.+..+ +..
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~  285 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV  285 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred             eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence            999999999776 33332221                                      26899999999999866 556


Q ss_pred             ccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCC
Q psy10538        168 IQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR  237 (288)
Q Consensus       168 l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~  237 (288)
                      +..+++|+.|++++|++.          .+|++|++++|.++.+.+..+..+++|+.|++++|.++.++...  +..+++
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~  363 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT--FKFLEK  363 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC--SCSCCC
T ss_pred             hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh--hcCCCC
Confidence            888999999999999876          48999999999999988878888999999999999999888753  788999


Q ss_pred             ccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccc
Q psy10538        238 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK  282 (288)
Q Consensus       238 L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~  282 (288)
                      |+.|++++|.++.++.    +++|+.+++++|+++.+|.....+.
T Consensus       364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~  404 (844)
T 3j0a_A          364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTAN  404 (844)
T ss_dssp             CCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred             CCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccc
Confidence            9999999999998764    7889999999999999887654443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=5.3e-20  Score=172.34  Aligned_cols=154  Identities=17%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             cCccccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCC
Q psy10538         21 ISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESR   99 (288)
Q Consensus        21 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~   99 (288)
                      +|..+..+.++...++.... ..+.++++|+.++++.+.++.                 ++ ..+..+++|++|++++|+
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-----------------i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-----------------IEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCE-----------------ECTTTTTTCTTCCEEECTTCC
T ss_pred             ccccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCc-----------------cCcccccCchhCCEEeCcCCc
Confidence            34444444444444433321 345556666666666666544                 32 235556666666666665


Q ss_pred             ccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcc--cCccccCCCCCcE
Q psy10538        100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVE  176 (288)
Q Consensus       100 l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~  176 (288)
                      +.              .+++..|.++++|++|++++|+++.++. .+..+++|++|++++|.++.  +|..++.+++|++
T Consensus        88 l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           88 IQ--------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             CC--------------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CC--------------ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            54              3444555666666666666666665544 45556666666666666553  4555666666666


Q ss_pred             EEccCCCCCC----------Cc----cEEEccCCCCCCCChHHH
Q psy10538        177 LDVSRNGCNR----------QV----EYVDKRHCSLPNVPEDVL  206 (288)
Q Consensus       177 L~l~~n~~~~----------~L----~~L~l~~n~l~~~~~~~~  206 (288)
                      |++++|+++.          ++    +.+++++|.++.+++..+
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~  197 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  197 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence            6666665541          23    455666665555444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=6.5e-20  Score=171.54  Aligned_cols=182  Identities=21%  Similarity=0.261  Sum_probs=151.1

Q ss_pred             cccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCC
Q psy10538         49 SIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSL  128 (288)
Q Consensus        49 ~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L  128 (288)
                      +++.++++.+.+++                 +|+.+.  ++|+.|++++|+++.+|                  ..+++|
T Consensus        60 ~L~~L~Ls~n~L~~-----------------lp~~l~--~~L~~L~Ls~N~l~~ip------------------~~l~~L  102 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-----------------LPDNLP--PQITVLEITQNALISLP------------------ELPASL  102 (571)
T ss_dssp             TCSEEECCSSCCSC-----------------CCSCCC--TTCSEEECCSSCCSCCC------------------CCCTTC
T ss_pred             CccEEEeCCCCCCc-----------------cCHhHc--CCCCEEECcCCCCcccc------------------cccCCC
Confidence            56666666666644                 676553  78999999999888543                  235799


Q ss_pred             cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCCCC
Q psy10538        129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPNVP  202 (288)
Q Consensus       129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~~~  202 (288)
                      ++|++++|+|+.+|. +..  +|+.|++++|.++.+|.   .+++|++|++++|.++      .+|++|++++|.++.+|
T Consensus       103 ~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp  176 (571)
T 3cvr_A          103 EYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLP  176 (571)
T ss_dssp             CEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred             CEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcc
Confidence            999999999999988 654  99999999999998887   5789999999999887      48999999999999988


Q ss_pred             hHHHhcCCCcceeecccCcccccCCccccccCCCCc-------cEEEccCCCCccCCccccCCCCCcEEECcCCCCC-Cc
Q psy10538        203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL-------RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NV  274 (288)
Q Consensus       203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L-------~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~i  274 (288)
                      .  +.  ++|+.|++++|.++.+|. +   ..  +|       +.|++++|+|+.+|..+..+++|+.|++++|+++ .+
T Consensus       177 ~--l~--~~L~~L~Ls~N~L~~lp~-~---~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          177 E--LP--ESLEALDVSTNLLESLPA-V---PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             C--CC--TTCCEEECCSSCCSSCCC-C---C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             h--hh--CCCCEEECcCCCCCchhh-H---HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            7  33  899999999999999987 2   22  66       9999999999999998888999999999999998 78


Q ss_pred             Ccccccccc
Q psy10538        275 DSSMVYLKL  283 (288)
Q Consensus       275 p~~~~~l~~  283 (288)
                      |..+..++.
T Consensus       247 p~~l~~l~~  255 (571)
T 3cvr_A          247 RESLSQQTA  255 (571)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            888777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=2.3e-19  Score=164.15  Aligned_cols=186  Identities=20%  Similarity=0.200  Sum_probs=160.1

Q ss_pred             ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCccccc
Q psy10538         68 EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR  147 (288)
Q Consensus        68 ~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~  147 (288)
                      ..+++.++.++.+| .++.+++|++|++++|+++.+              +   +..+++|++|++++|.++.+|  +..
T Consensus        45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~--------------~---~~~l~~L~~L~Ls~N~l~~~~--~~~  104 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL--------------D---LSQNTNLTYLACDSNKLTNLD--VTP  104 (457)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC--------------C---CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred             CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE--------------c---cccCCCCCEEECcCCCCceee--cCC
Confidence            34777778888886 689999999999999988742              1   667899999999999999885  788


Q ss_pred             CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEEEccCC-CCCCCChHHHhcCCCcceeeccc
Q psy10538        148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYVDKRHC-SLPNVPEDVLRYFRSLEELLLDA  219 (288)
Q Consensus       148 l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~  219 (288)
                      +++|++|++++|.++.+|  ++.+++|++|++++|+++       .+|++|++++| .+..++   +..+++|+.|++++
T Consensus       105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSF  179 (457)
T ss_dssp             CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCS
T ss_pred             CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCC
Confidence            999999999999999886  788999999999999887       48999999999 455553   45689999999999


Q ss_pred             CcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       220 n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      |.++.+|     ++.+++|+.|++++|+++.++  ++.+++|+.|++++|+++.+|  +..++.++.+
T Consensus       180 n~l~~l~-----l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L  238 (457)
T 3bz5_A          180 NKITELD-----VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF  238 (457)
T ss_dssp             SCCCCCC-----CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEE
T ss_pred             Cccceec-----cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEE
Confidence            9999987     578899999999999999874  889999999999999999998  6677666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=161.73  Aligned_cols=181  Identities=17%  Similarity=0.105  Sum_probs=146.1

Q ss_pred             CCCccEEEcCCCCccchhhHHHhhcCCceecchHHh--hcCcCCcEEEcccCCCcc-cC----cccccCCCccEEecCCC
Q psy10538         87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVL--RYFRSLEELLLDANHIRD-LP----KNFFRLNRLRKLGLSDN  159 (288)
Q Consensus        87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~--~~l~~L~~L~l~~n~i~~-lp----~~~~~l~~L~~L~l~~n  159 (288)
                      ++.|+++++++|++.              ...+..+  ..+++|++|++++|.++. .+    ..+..+++|++|++++|
T Consensus        90 ~~~L~~L~l~~n~l~--------------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           90 YSRLKELTLEDLKIT--------------GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HSCCCEEEEESCCCB--------------SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             cCceeEEEeeCCEec--------------cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            345788888887766              3334444  789999999999999984 23    24456899999999999


Q ss_pred             CCcccC-ccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCChH---HHhcCCCcceeecccCc
Q psy10538        160 EIHRLP-PEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVPED---VLRYFRSLEELLLDANH  221 (288)
Q Consensus       160 ~l~~l~-~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~  221 (288)
                      .+..++ ..+..+++|++|++++|++.              ++|++|++++|+++.++..   .+..+++|++|++++|.
T Consensus       156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          156 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence            999775 56889999999999999853              3799999999999876653   45668999999999999


Q ss_pred             cccc-CCccccccCC---CCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        222 IRDL-PKNYLDFFRL---NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       222 l~~l-~~~~~~~~~l---~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      ++.+ |..   ++.+   ++|++|++++|+++.+|..+.  ++|+.|++++|+++.+|. ...++.++.+
T Consensus       236 l~~~~p~~---~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          236 LRATVNPS---APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             CCCCCCSC---CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred             CCccchhh---HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence            9976 766   4554   799999999999999998774  799999999999998765 5566665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.1e-19  Score=160.76  Aligned_cols=187  Identities=18%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             cEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538         51 REYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF  125 (288)
Q Consensus        51 ~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l  125 (288)
                      +.++|+.++++.++.    ....+++.++.++.+|+ .+..+++|++|++++|++.+             .+++++|.++
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-------------~i~~~~f~~L   78 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-------------VIEADVFSNL   78 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-------------EECTTSBCSC
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-------------ccChhHhhcc
Confidence            345666666544211    11223333344444443 23444455555555444321             2333444444


Q ss_pred             cCCcE-EEcccCCCcccC-cccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccC-CCCC-----------CCccE
Q psy10538        126 RSLEE-LLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSR-NGCN-----------RQVEY  190 (288)
Q Consensus       126 ~~L~~-L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~-n~~~-----------~~L~~  190 (288)
                      +++++ +.+++|+++.++ ..|..+++|++|++++|.++.+|.. +....++..+++.+ +.+.           ..++.
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  158 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence            44443 333444555442 2344455555555555555544332 22233344444432 2111           13445


Q ss_pred             EEccCCCCCCCChHHHhcCCCcceeecc-cCcccccCCccccccCCCCccEEEccCCCCccCCc
Q psy10538        191 VDKRHCSLPNVPEDVLRYFRSLEELLLD-ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP  253 (288)
Q Consensus       191 L~l~~n~l~~~~~~~~~~~~~L~~L~l~-~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~  253 (288)
                      |++++|+++.+++..+. ..+++.+++. +|.++.+|...  +..+++|+.|++++|+|+.+|.
T Consensus       159 L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          159 LWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             EECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTSCCCCCCS
T ss_pred             hccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHH--hccCcccchhhcCCCCcCccCh
Confidence            55555555555444443 3345555553 24445554432  3445555555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.3e-19  Score=148.49  Aligned_cols=171  Identities=27%  Similarity=0.366  Sum_probs=141.7

Q ss_pred             CCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccE
Q psy10538         75 STKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRK  153 (288)
Q Consensus        75 ~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~  153 (288)
                      +.+..+|..+  .+.++++++++|++.              .+++..|..+++|++|++++|+++.+|. .+..+++|++
T Consensus        17 ~~l~~~p~~~--~~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A           17 QGRTSVPTGI--PAQTTYLDLETNSLK--------------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSSCCC--------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCccCCCCCC--CCCCcEEEcCCCccC--------------cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            3334567554  458999999998877              4556668889999999999999998876 4678999999


Q ss_pred             EecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccc
Q psy10538        154 LGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF  232 (288)
Q Consensus       154 L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~  232 (288)
                      |++++|.++.++.. +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.++...  +
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~  144 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTN--------------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV--F  144 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--T
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCC--------------cCcccCHhHhccCCcCCEEECCCCccceeCHHH--h
Confidence            99999999988765 677888888888888              788888887788999999999999999888753  6


Q ss_pred             cCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccccc
Q psy10538        233 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKL  283 (288)
Q Consensus       233 ~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~  283 (288)
                      ..+++|+.|++++|.+.      +.+++|+.|+++.|+++ .+|+.++.++.
T Consensus       145 ~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          145 DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            78999999999999765      34668999999999988 89988887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=2.2e-19  Score=154.90  Aligned_cols=175  Identities=24%  Similarity=0.361  Sum_probs=128.4

Q ss_pred             cCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538         45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY  124 (288)
Q Consensus        45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~  124 (288)
                      ..++.|+.++++.+.++.                 +| .+..+++|+.|++++|++..+              ++  +..
T Consensus        43 ~~l~~L~~L~l~~~~i~~-----------------~~-~~~~l~~L~~L~L~~n~l~~~--------------~~--l~~   88 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVTKLFLNGNKLTDI--------------KP--LAN   88 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCC--------------GG--GTT
T ss_pred             hhcCcccEEEccCCCccc-----------------Ch-hHhcCCCCCEEEccCCccCCC--------------cc--ccc
Confidence            456667777777766644                 43 367788888888888877742              22  667


Q ss_pred             CcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538        125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED  204 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~  204 (288)
                      +++|++|++++|.++.+|. +..+++|+.|++++|.++.++ .+..+++|++|++++|              .++.+  .
T Consensus        89 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n--------------~l~~~--~  150 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--------------KITDI--T  150 (291)
T ss_dssp             CTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS--------------CCCCC--G
T ss_pred             CCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC--------------cCCcc--h
Confidence            7888888888888887654 777888888888888888763 4667777777777777              56655  2


Q ss_pred             HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538        205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      .+..+++|+.|++++|.++.++.    +..+++|+.|++++|+++.+|. +..+++|+.|++++|++...|.
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred             hhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence            35557788888888888887765    6677888888888888887764 7778888888888887765443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=4.3e-19  Score=149.60  Aligned_cols=167  Identities=24%  Similarity=0.362  Sum_probs=135.9

Q ss_pred             CCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc
Q psy10538         88 AAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP  166 (288)
Q Consensus        88 ~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~  166 (288)
                      ...++++++++.+..+|..+                 .+.+++|++++|.++.++. .+..+++|++|++++|.++.+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~-----------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI-----------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC-----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCeEEecCCCCccccCCCC-----------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            34678888887777543221                 2578889999999887654 67888899999999999887654


Q ss_pred             -cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccC
Q psy10538        167 -EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD  245 (288)
Q Consensus       167 -~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~  245 (288)
                       .+..+++|++|++++|              .++.+++..+..+++|+.|++++|.++.+|...  +..+++|+.|++++
T Consensus        77 ~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~  140 (251)
T 3m19_A           77 GVFDDLTELGTLGLANN--------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV--FDRLTKLKELRLNT  140 (251)
T ss_dssp             TTTTTCTTCCEEECTTS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCS
T ss_pred             hHhccCCcCCEEECCCC--------------cccccChhHhcccCCCCEEEcCCCcCCCcChhH--hccCCcccEEECcC
Confidence             4677788888888777              888888888888999999999999999998763  67899999999999


Q ss_pred             CCCccCCc-cccCCCCCcEEECcCCCCCCcCc-cccccccccCC
Q psy10538        246 NEIHRLPP-EIQNFENLVELDVSRNAPSNVDS-SMVYLKLGRKD  287 (288)
Q Consensus       246 n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~-~~~~l~~~~~~  287 (288)
                      |+++.+|. .+..+++|+.|++++|+++.+|+ .+..++.++.+
T Consensus       141 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            99998887 58899999999999999998876 55666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=3.7e-19  Score=168.11  Aligned_cols=170  Identities=21%  Similarity=0.268  Sum_probs=122.5

Q ss_pred             CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEe
Q psy10538         77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLG  155 (288)
Q Consensus        77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~  155 (288)
                      ++.+|+.+.  +.+++|+|++|+|+              .+++..|.++++|++|++++|+|+.+|+ +|..+++|++|+
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~--------------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~  106 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLR--------------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI  106 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCC--------------CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence            345787653  46899999998877              6677789999999999999999998865 688899999999


Q ss_pred             cCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc--CCccccc
Q psy10538        156 LSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL--PKNYLDF  232 (288)
Q Consensus       156 l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~~~~~~  232 (288)
                      +++|+++.+|.. |..+++|++|++++|              +++.+++..++.+++|++|++++|.++.+  |..   +
T Consensus       107 Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N--------------~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~---~  169 (635)
T 4g8a_A          107 LTGNPIQSLALGAFSGLSSLQKLVAVET--------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---F  169 (635)
T ss_dssp             CTTCCCCEECGGGGTTCTTCCEEECTTS--------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---G
T ss_pred             ccCCcCCCCCHHHhcCCCCCCEEECCCC--------------cCCCCChhhhhcCcccCeeccccCccccCCCchh---h
Confidence            999999988764 788888888888888              56666665566667777777777776643  333   5


Q ss_pred             cCCCCccEEEccCCCCccCC-ccccCCC----CCcEEECcCCCCCCcCcccc
Q psy10538        233 FRLNRLRKLGLSDNEIHRLP-PEIQNFE----NLVELDVSRNAPSNVDSSMV  279 (288)
Q Consensus       233 ~~l~~L~~L~l~~n~l~~~p-~~l~~~~----~L~~L~L~~N~l~~ip~~~~  279 (288)
                      +.+++|++|++++|+++.++ ..+..+.    ....++++.|.++.++....
T Consensus       170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~  221 (635)
T 4g8a_A          170 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  221 (635)
T ss_dssp             GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence            56677777777777776443 2333222    23356666666665554433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.7e-18  Score=149.35  Aligned_cols=164  Identities=25%  Similarity=0.404  Sum_probs=130.0

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR  163 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~  163 (288)
                      ...++.++.+++++|.+..++                .+..+++|++|++++|+++.++. +..+++|+.|++++|.++.
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~----------------~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQ----------------GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             hhhcCcccEEEccCCCcccCh----------------hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence            556777788888887766431                25567788888888888887765 7777888888888888777


Q ss_pred             cCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEc
Q psy10538        164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL  243 (288)
Q Consensus       164 l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l  243 (288)
                      ++. +..+++|++|++++|              .++.++  .+..+++|+.|++++|.++.++.    +..+++|+.|++
T Consensus       105 ~~~-l~~l~~L~~L~L~~n--------------~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L  163 (291)
T 1h6t_A          105 LSS-LKDLKKLKSLSLEHN--------------GISDIN--GLVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSL  163 (291)
T ss_dssp             GGG-GTTCTTCCEEECTTS--------------CCCCCG--GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEEC
T ss_pred             Chh-hccCCCCCEEECCCC--------------cCCCCh--hhcCCCCCCEEEccCCcCCcchh----hccCCCCCEEEc
Confidence            654 666777777777777              777763  35568999999999999999853    889999999999


Q ss_pred             cCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       244 ~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      ++|+++.++. +..+++|+.|++++|+++++|. +..++.++.+
T Consensus       164 ~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L  205 (291)
T 1h6t_A          164 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVL  205 (291)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEE
T ss_pred             cCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEE
Confidence            9999998876 8999999999999999999975 7777766654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=9.3e-19  Score=148.74  Aligned_cols=146  Identities=22%  Similarity=0.306  Sum_probs=106.4

Q ss_pred             hhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCC-------CccEEEcc
Q psy10538        122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR-------QVEYVDKR  194 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~-------~L~~L~l~  194 (288)
                      +..+++|++|++++|.++.+| .+..+++|+.|++++|.++.++. +..+++|++|++++|++++       +|++|+++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~  114 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD  114 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence            445556666666666666555 45556666666666666665554 5556666666666665542       66777777


Q ss_pred             CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCc
Q psy10538        195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~i  274 (288)
                      +|.++.++.  +..+++|+.|++++|+++.++.    ++.+++|+.|++++|+++.+ ..+..+++|+.|++++|++...
T Consensus       115 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~~----l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          115 NNELRDTDS--LIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SSCCSBSGG--GTTCTTCCEEECTTSCCCBCGG----GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCccCCChh--hcCcccccEEECCCCcCCCChH----HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            778887753  6668999999999999998873    78899999999999999977 5688899999999999988766


Q ss_pred             Cc
Q psy10538        275 DS  276 (288)
Q Consensus       275 p~  276 (288)
                      |.
T Consensus       188 ~~  189 (263)
T 1xeu_A          188 PV  189 (263)
T ss_dssp             CE
T ss_pred             cc
Confidence            54

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.2e-18  Score=141.50  Aligned_cols=154  Identities=16%  Similarity=0.250  Sum_probs=112.4

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR  163 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~  163 (288)
                      ...++.++.+++++|.+..++                .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~----------------~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~  102 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT----------------GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS  102 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT----------------TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG
T ss_pred             hhhcCCccEEeccCCCccChH----------------HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc
Confidence            355666777777776665332                1455667777777777665553 45667777777777777763


Q ss_pred             -cCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCc-ccccCCccccccCCCCccEE
Q psy10538        164 -LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKL  241 (288)
Q Consensus       164 -l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l~~L~~L  241 (288)
                       .+..++.+++|++|++++|              .++...+..+..+++|+.|++++|. ++.+|.    +..+++|+.|
T Consensus       103 ~~~~~l~~l~~L~~L~Ls~n--------------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~----l~~l~~L~~L  164 (197)
T 4ezg_A          103 DKIPNLSGLTSLTLLDISHS--------------AHDDSILTKINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSL  164 (197)
T ss_dssp             GGSCCCTTCTTCCEEECCSS--------------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG----GGGCSSCCEE
T ss_pred             ccChhhcCCCCCCEEEecCC--------------ccCcHhHHHHhhCCCCCEEEccCCCCccccHh----hcCCCCCCEE
Confidence             4555666666666666666              7776556667779999999999998 888874    8899999999


Q ss_pred             EccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538        242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       242 ~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                      ++++|+++.++ .+..+++|+.|++++|++.+
T Consensus       165 ~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          165 NIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             ECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99999999887 78899999999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=4.3e-18  Score=159.24  Aligned_cols=163  Identities=24%  Similarity=0.321  Sum_probs=139.9

Q ss_pred             CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccc
Q psy10538         89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI  168 (288)
Q Consensus        89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l  168 (288)
                      +++.+++++|.++.+|              +..   .++|++|++++|.|+.+|   ..+++|++|++++|.++.+|. +
T Consensus        60 ~L~~L~Ls~n~L~~lp--------------~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLP--------------DNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L  118 (571)
T ss_dssp             TCSEEECCSSCCSCCC--------------SCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C
T ss_pred             CccEEEeCCCCCCccC--------------HhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h
Confidence            7999999999888533              222   268999999999999998   447999999999999999988 6


Q ss_pred             cCCCCCcEEEccCCCCCC------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538        169 QNFENLVELDVSRNGCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG  242 (288)
Q Consensus       169 ~~~~~L~~L~l~~n~~~~------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~  242 (288)
                      ..  +|++|++++|.+++      +|++|++++|.++.+|.    .+++|+.|++++|.++.+|.    +.  ++|+.|+
T Consensus       119 ~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~----l~--~~L~~L~  186 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE----LP--ESLEALD  186 (571)
T ss_dssp             CT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CC--TTCCEEE
T ss_pred             hc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch----hh--CCCCEEE
Confidence            54  89999999998873      79999999999999887    47899999999999999987    23  8999999


Q ss_pred             ccCCCCccCCccccCCCCC-------cEEECcCCCCCCcCccccccccccCC
Q psy10538        243 LSDNEIHRLPPEIQNFENL-------VELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       243 l~~n~l~~~p~~l~~~~~L-------~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      +++|+|+.+|. +..  +|       +.|++++|+|+.||..++.++.++.+
T Consensus       187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTI  235 (571)
T ss_dssp             CCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEE
T ss_pred             CcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEE
Confidence            99999999998 654  77       99999999999999999988877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=4.3e-20  Score=165.27  Aligned_cols=177  Identities=20%  Similarity=0.250  Sum_probs=114.0

Q ss_pred             cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcccccC---------CC
Q psy10538         85 NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRL---------NR  150 (288)
Q Consensus        85 ~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l---------~~  150 (288)
                      ..+++|++|++++|.+....         . ...+..+..+++|++|++++|.++.     ++..+..+         ++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~---------~-~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~  160 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTA---------Q-EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP  160 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTT---------H-HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhCCcccEEECCCCcCCHHH---------H-HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence            46666777777776665310         0 0123445667778888888887762     22233333         77


Q ss_pred             ccEEecCCCCCc--ccC---ccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCC-----CCChHH
Q psy10538        151 LRKLGLSDNEIH--RLP---PEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLP-----NVPEDV  205 (288)
Q Consensus       151 L~~L~l~~n~l~--~l~---~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~-----~~~~~~  205 (288)
                      |++|++++|.++  .++   ..+..+++|++|++++|+++               ++|++|++++|.++     .++ ..
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~  239 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IA  239 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HH
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HH
Confidence            788888888775  333   34556777888888877766               36778888888774     233 23


Q ss_pred             HhcCCCcceeecccCcccc-----cCCccccc--cCCCCccEEEccCCCCcc-----CCccc-cCCCCCcEEECcCCCCC
Q psy10538        206 LRYFRSLEELLLDANHIRD-----LPKNYLDF--FRLNRLRKLGLSDNEIHR-----LPPEI-QNFENLVELDVSRNAPS  272 (288)
Q Consensus       206 ~~~~~~L~~L~l~~n~l~~-----l~~~~~~~--~~l~~L~~L~l~~n~l~~-----~p~~l-~~~~~L~~L~L~~N~l~  272 (288)
                      +..+++|+.|++++|.++.     ++..   +  +.+++|+.|++++|.++.     +|..+ .++++|+.|++++|+++
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~---l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDA---FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHH---HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHH---HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            4556778888888877763     3443   3  337778888888888775     66666 45777888888888777


Q ss_pred             CcC
Q psy10538        273 NVD  275 (288)
Q Consensus       273 ~ip  275 (288)
                      ...
T Consensus       317 ~~~  319 (386)
T 2ca6_A          317 EED  319 (386)
T ss_dssp             TTS
T ss_pred             cch
Confidence            544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.8e-18  Score=153.55  Aligned_cols=169  Identities=24%  Similarity=0.333  Sum_probs=135.3

Q ss_pred             ecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh-cCcCCcEEEcccCCCcccCc-ccccCC
Q psy10538         72 YYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR-YFRSLEELLLDANHIRDLPK-NFFRLN  149 (288)
Q Consensus        72 ~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~n~i~~lp~-~~~~l~  149 (288)
                      ..++.++.+|..+.  ..++.|++++|++.              .+++..|. .+++|++|++++|+|+.++. .|..++
T Consensus        25 c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~--------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   88 (361)
T 2xot_A           25 CSKQQLPNVPQSLP--SYTALLDLSHNNLS--------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP   88 (361)
T ss_dssp             CCSSCCSSCCSSCC--TTCSEEECCSSCCC--------------EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             eCCCCcCccCccCC--CCCCEEECCCCCCC--------------ccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence            33334455776553  45889999998877              45556666 88999999999999998764 688899


Q ss_pred             CccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538        150 RLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN  228 (288)
Q Consensus       150 ~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~  228 (288)
                      +|+.|++++|.++.++. .+..+++|++|++++|              .++.+++..+..+++|+.|++++|.++.+|..
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN--------------HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC--------------cccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            99999999999998865 4778888888888888              77777777788889999999999999999876


Q ss_pred             cccc---cCCCCccEEEccCCCCccCCc-cccCCCC--CcEEECcCCCCC
Q psy10538        229 YLDF---FRLNRLRKLGLSDNEIHRLPP-EIQNFEN--LVELDVSRNAPS  272 (288)
Q Consensus       229 ~~~~---~~l~~L~~L~l~~n~l~~~p~-~l~~~~~--L~~L~L~~N~l~  272 (288)
                      .  +   ..+++|+.|++++|+|+.+|. .+..++.  ++.|++++|++.
T Consensus       155 ~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          155 L--IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             G--TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             H--hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3  3   568999999999999998885 4667776  488999999876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=6.1e-18  Score=140.73  Aligned_cols=139  Identities=27%  Similarity=0.404  Sum_probs=64.1

Q ss_pred             CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEec
Q psy10538         78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGL  156 (288)
Q Consensus        78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l  156 (288)
                      +.+|..+.  ++++.|++++|++.              .+.+..|..+++|++|++++|+|+.+|. .+..+++|+.|++
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHDNQIT--------------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CccCCCCC--CCCCEEEcCCCccC--------------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            45554332  44555555554444              2233334445555555555555554443 2344455555555


Q ss_pred             CCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC
Q psy10538        157 SDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL  235 (288)
Q Consensus       157 ~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l  235 (288)
                      ++|.++.++.. +..+++|++|++++|              +++.+|... ..+++|+.|++++|.++.++...  +..+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N--------------~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~--~~~l  158 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCN--------------KLTELPRGI-ERLTHLTHLALDQNQLKSIPHGA--FDRL  158 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTT--TTTC
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCC--------------cccccCccc-ccCCCCCEEECCCCcCCccCHHH--HhCC
Confidence            55555544332 334444444444444              444444332 23444555555555555444321  3444


Q ss_pred             CCccEEEccCCCCc
Q psy10538        236 NRLRKLGLSDNEIH  249 (288)
Q Consensus       236 ~~L~~L~l~~n~l~  249 (288)
                      ++|+.|++++|.+.
T Consensus       159 ~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          159 SSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCCEEECTTSCBC
T ss_pred             CCCCEEEeeCCCcc
Confidence            45555555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6.6e-18  Score=139.69  Aligned_cols=145  Identities=21%  Similarity=0.330  Sum_probs=104.2

Q ss_pred             cCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCc
Q psy10538         73 YNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRL  151 (288)
Q Consensus        73 ~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L  151 (288)
                      .++.++.+|..+.  +.+++|++++|++.              .+++..|..+++|++|++++|.|+.+ |..|..+++|
T Consensus        19 ~~~~l~~iP~~l~--~~l~~L~l~~n~i~--------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           19 RGKGLTEIPTNLP--ETITEIRLEQNTIK--------------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             TTSCCSSCCSSCC--TTCCEEECCSSCCC--------------EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CCCCcCcCCCccC--cCCCEEECCCCcCC--------------CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            3333455666553  56788888887666              45555677778888888888888865 5677778888


Q ss_pred             cEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccc
Q psy10538        152 RKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL  230 (288)
Q Consensus       152 ~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~  230 (288)
                      ++|++++|.++.+|.. +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.++... 
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-  147 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNAN--------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT-  147 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCC--------------CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH-
Confidence            8888888888877665 466777777777777              667776666777778888888888887776542 


Q ss_pred             cccCCCCccEEEccCCCCc
Q psy10538        231 DFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       231 ~~~~l~~L~~L~l~~n~l~  249 (288)
                       +..+++|+.|++++|++.
T Consensus       148 -~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          148 -FSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             -TTTCTTCCEEECCSSCEE
T ss_pred             -HhCCCCCCEEEeCCCCcC
Confidence             667777888888887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=5.4e-18  Score=159.90  Aligned_cols=173  Identities=25%  Similarity=0.377  Sum_probs=119.2

Q ss_pred             ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538         44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR  123 (288)
Q Consensus        44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~  123 (288)
                      ...+..|+.+.++.+.+..                 +| .+..+++|+.|+|++|++..+              ++  +.
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-----------------l~-~l~~l~~L~~L~Ls~N~l~~~--------------~~--l~   84 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVTKLFLNGNKLTDI--------------KP--LT   84 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-----------------CT-TGGGCTTCCEEECTTSCCCCC--------------GG--GG
T ss_pred             hhcCCCCCEEECcCCCCCC-----------------Ch-HHccCCCCCEEEeeCCCCCCC--------------hh--hc
Confidence            3456666777777666644                 44 477888999999999887743              22  67


Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE  203 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~  203 (288)
                      .+++|+.|++++|.++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|              .++.+  
T Consensus        85 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N--------------~l~~l--  146 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--------------KITDI--  146 (605)
T ss_dssp             GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS--------------CCCCC--
T ss_pred             cCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC--------------ccCCc--
Confidence            7889999999999988876 5778889999999999888764 4777888888888888              44444  


Q ss_pred             HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538        204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                      ..+..+++|+.|++++|.++.+++    +..+++|+.|++++|+|+.+| .+..+++|+.|++++|++..
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred             hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence            223445666666666666665544    455666666666666666553 45566666666666665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=4.9e-18  Score=150.10  Aligned_cols=189  Identities=22%  Similarity=0.284  Sum_probs=109.8

Q ss_pred             EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCc-cccc
Q psy10538         70 FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPK-NFFR  147 (288)
Q Consensus        70 l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~-~~~~  147 (288)
                      ....++.++++|..+  .+++++|++++|+|+              .+++++|.++++|++|++++|++. .+|. .|..
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~--------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~   77 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLR--------------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   77 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESCCCS--------------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCCcCC--------------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence            344555556666554  245666666666555              445555666666666666666654 3443 4555


Q ss_pred             CCCccE-EecCCCCCcccC-ccccCCCCCcEEEccCCCCCC----------CccEEEccC-CCCCCCChHHHhcCC-Ccc
Q psy10538        148 LNRLRK-LGLSDNEIHRLP-PEIQNFENLVELDVSRNGCNR----------QVEYVDKRH-CSLPNVPEDVLRYFR-SLE  213 (288)
Q Consensus       148 l~~L~~-L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~----------~L~~L~l~~-n~l~~~~~~~~~~~~-~L~  213 (288)
                      +++++. +.+.+|.++.++ ..+..+++|+++++++|++..          ++..+++.+ +.+..++...+..+. .++
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  157 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence            555443 444556666653 335666666666666665541          445555543 455555555444433 466


Q ss_pred             eeecccCcccccCCccccccCCCCccEEEcc-CCCCccCCcc-ccCCCCCcEEECcCCCCCCcCcc
Q psy10538        214 ELLLDANHIRDLPKNYLDFFRLNRLRKLGLS-DNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS  277 (288)
Q Consensus       214 ~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~-~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip~~  277 (288)
                      .|++++|+++.+|..   .....+|+.+++. +|.++.+|.. |.++++|+.||+++|+|+.+|..
T Consensus       158 ~L~L~~N~i~~i~~~---~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          158 ILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             EEECCSSCCCEECTT---SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             hhccccccccCCChh---hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence            666666666666665   4445566666665 3556666643 56666666666666666666653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=8.4e-18  Score=139.03  Aligned_cols=129  Identities=28%  Similarity=0.427  Sum_probs=62.0

Q ss_pred             CcEEEcccCCCcccC--cccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538        128 LEELLLDANHIRDLP--KNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED  204 (288)
Q Consensus       128 L~~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~  204 (288)
                      +++|++++|.|+.++  ..+..+++|+.|++++|.++.++. .+..+++|++|++++|              .++.+++.
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~   99 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN--------------RLENVQHK   99 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------------CCCCCCGG
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC--------------ccCccCHh
Confidence            344555555554432  124445555555555555554433 3444444444444444              44444444


Q ss_pred             HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCC
Q psy10538        205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      .+..+++|+.|++++|.++.+++..  +..+++|+.|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus       100 ~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNRITCVGNDS--FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GGTTCSSCCEEECTTSCCCCBCTTS--STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             HhcCCcCCCEEECCCCcCCeECHhH--cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            4444555555555555555442221  44555555555555555543 334455555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=7.7e-18  Score=139.27  Aligned_cols=149  Identities=25%  Similarity=0.388  Sum_probs=127.2

Q ss_pred             cEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCccc-Cccc
Q psy10538         91 SERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRL-PPEI  168 (288)
Q Consensus        91 ~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~l  168 (288)
                      +.+++++++++.+|..              .   .+++++|++++|.|+.++. .|..+++|+.|++++|.++.+ |..+
T Consensus        14 ~~v~c~~~~l~~iP~~--------------l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~   76 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN--------------L---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF   76 (220)
T ss_dssp             TEEECTTSCCSSCCSS--------------C---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CEEEcCCCCcCcCCCc--------------c---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh
Confidence            5678888777754321              1   2579999999999998865 788899999999999999977 6678


Q ss_pred             cCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCC
Q psy10538        169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI  248 (288)
Q Consensus       169 ~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l  248 (288)
                      ..+++|++|++++|              .++.+++..+..+++|+.|++++|.++.++...  +..+++|+.|++++|++
T Consensus        77 ~~l~~L~~L~Ls~N--------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           77 QGLRSLNSLVLYGN--------------KITELPKSLFEGLFSLQLLLLNANKINCLRVDA--FQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             TTCSSCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCC
T ss_pred             hCCcCCCEEECCCC--------------cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH--cCCCCCCCEEECCCCcC
Confidence            88888888888888              888999988888999999999999999886542  88999999999999999


Q ss_pred             ccCCc-cccCCCCCcEEECcCCCCC
Q psy10538        249 HRLPP-EIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       249 ~~~p~-~l~~~~~L~~L~L~~N~l~  272 (288)
                      +.++. .+..+++|+.+++++|++.
T Consensus       141 ~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          141 QTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEECHHHHhCCCCCCEEEeCCCCcC
Confidence            98876 4888999999999999885

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=5e-18  Score=134.24  Aligned_cols=137  Identities=19%  Similarity=0.230  Sum_probs=120.3

Q ss_pred             cCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538        124 YFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV  201 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~  201 (288)
                      ..+++++|++++|.++  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|              .++..
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N--------------~l~~~   86 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN--------------RIFGG   86 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC--------------CCCSC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC--------------cCchH
Confidence            3578999999999998  8898888999999999999999987 66778888888888888              77774


Q ss_pred             ChHHHhcCCCcceeecccCcccccC--CccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEECcCCCCCCcC
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLP--KNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      .+..+..+++|+.|++++|.++.+|  ..   +..+++|+.|++++|+++.+|.    .+..+++|+.|++++|.+.++|
T Consensus        87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           87 LDMLAEKLPNLTHLNLSGNKLKDISTLEP---LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CCHHHHHCTTCCEEECBSSSCCSSGGGGG---GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             HHHHHhhCCCCCEEeccCCccCcchhHHH---HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            5566666899999999999999887  44   8899999999999999998887    6889999999999999999998


Q ss_pred             ccc
Q psy10538        276 SSM  278 (288)
Q Consensus       276 ~~~  278 (288)
                      .+.
T Consensus       164 ~~~  166 (168)
T 2ell_A          164 DSD  166 (168)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.1e-17  Score=137.41  Aligned_cols=151  Identities=25%  Similarity=0.361  Sum_probs=130.2

Q ss_pred             CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCcccCcc
Q psy10538         89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPE  167 (288)
Q Consensus        89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~  167 (288)
                      .-+.++.++++++.+|..+                 .+++++|++++|.|+.+ |..+..+++|+.|++++|.++.+|..
T Consensus        20 s~~~v~c~~~~l~~ip~~~-----------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~   82 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI-----------------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG   82 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC-----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             eCCEeEccCCCcCccCCCC-----------------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence            3577888888877554321                 27899999999999977 56788899999999999999988755


Q ss_pred             -ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCC
Q psy10538        168 -IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN  246 (288)
Q Consensus       168 -l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n  246 (288)
                       +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.+|..   +..+++|++|++++|
T Consensus        83 ~~~~l~~L~~L~Ls~N--------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTN--------------QLTVLPSAVFDRLVHLKELFMCCNKLTELPRG---IERLTHLTHLALDQN  145 (229)
T ss_dssp             TTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT---GGGCTTCSEEECCSS
T ss_pred             hcccCCCcCEEECCCC--------------cCCccChhHhCcchhhCeEeccCCcccccCcc---cccCCCCCEEECCCC
Confidence             677888888888888              88888888888899999999999999999988   889999999999999


Q ss_pred             CCccCCc-cccCCCCCcEEECcCCCCCC
Q psy10538        247 EIHRLPP-EIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       247 ~l~~~p~-~l~~~~~L~~L~L~~N~l~~  273 (288)
                      +++.+|. .+..+++|+.|++++|++..
T Consensus       146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          146 QLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9998875 58889999999999999884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=9.3e-19  Score=159.77  Aligned_cols=232  Identities=21%  Similarity=0.196  Sum_probs=164.3

Q ss_pred             ccccCCccccEEeeCCCcccccc------------CccceEEecCCCCCC-----CCccccCCCCccEEEcCCCCccchh
Q psy10538         42 SWSRNASSIREYLCHKTYLAAEE------------AFNEWFHYYNSTKPR-----GPPEINEDAAYSERVLHESRLQQYE  104 (288)
Q Consensus        42 ~~~~~l~~L~~l~~~~~~l~~l~------------~~~~~l~~~~~~~~~-----lp~~l~~l~~l~~l~l~~n~l~~l~  104 (288)
                      ..+.+++.|+.++++.+.++...            .....+++.++.++.     ++..+..+++|+++++++|.+....
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            34566778888888887765310            013446666665553     3445566788899999998876532


Q ss_pred             hH-HH--------------hhcCCceecc----hHHhhcCcCCcEEEcccCCCccc-----Cc-ccccCCCccEEecCCC
Q psy10538        105 EV-VA--------------EWTSKLKLYS----KDVLRYFRSLEELLLDANHIRDL-----PK-NFFRLNRLRKLGLSDN  159 (288)
Q Consensus       105 ~~-~~--------------~~~~~l~~~~----~~~~~~l~~L~~L~l~~n~i~~l-----p~-~~~~l~~L~~L~l~~n  159 (288)
                      .. +.              ...+.+....    +..+..+++|++|++++|.++..     ++ .+..+++|+.|++++|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            11 11              1123333321    45567789999999999988742     22 2235789999999999


Q ss_pred             CCcc-----cCccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCC----hHHHhcCCCccee
Q psy10538        160 EIHR-----LPPEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVP----EDVLRYFRSLEEL  215 (288)
Q Consensus       160 ~l~~-----l~~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L  215 (288)
                      .++.     ++..+..+++|++|++++|.+.               .+|++|++++|.++...    +..+..+++|+.|
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            9885     6777777899999999999875               48999999999988543    2344557999999


Q ss_pred             ecccCcccccC-Cccc-ccc-CCCCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCCC
Q psy10538        216 LLDANHIRDLP-KNYL-DFF-RLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       216 ~l~~n~l~~l~-~~~~-~~~-~l~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                      ++++|.++... ..+. .+. ..++|+.|++++|+++     .+|..+..+++|++|++++|++++
T Consensus       347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            99999988432 1100 022 2679999999999998     678888889999999999999973

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=1.6e-18  Score=153.96  Aligned_cols=148  Identities=16%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             cCCcEEEcccCCCcccCc-c----ccc-CCCccEEecCCCCCc-----ccCccccCCC-CCcEEEccCCCCC--------
Q psy10538        126 RSLEELLLDANHIRDLPK-N----FFR-LNRLRKLGLSDNEIH-----RLPPEIQNFE-NLVELDVSRNGCN--------  185 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~-~----~~~-l~~L~~L~l~~n~l~-----~l~~~l~~~~-~L~~L~l~~n~~~--------  185 (288)
                      ++|++|++++|+++..+. .    +.. .++|++|++++|.++     .++..+...+ +|++|++++|+++        
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  188 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA  188 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence            677778888877775433 2    222 247777888877776     2333444444 7778888777664        


Q ss_pred             -------CCccEEEccCCCCCC-----CChHHHhcCCCcceeecccCcccccCCccc--cccCCCCccEEEccCCCCcc-
Q psy10538        186 -------RQVEYVDKRHCSLPN-----VPEDVLRYFRSLEELLLDANHIRDLPKNYL--DFFRLNRLRKLGLSDNEIHR-  250 (288)
Q Consensus       186 -------~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~--~~~~l~~L~~L~l~~n~l~~-  250 (288)
                             .+|++|++++|.++.     ++.......++|+.|++++|.++..+...+  .+..+++|+.|++++|.+.. 
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i  268 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM  268 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred             HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence                   367778888777775     333333324577788888777775433100  14566777888887777332 


Q ss_pred             -------CCccccCCCCCcEEECcCCCCCC
Q psy10538        251 -------LPPEIQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       251 -------~p~~l~~~~~L~~L~L~~N~l~~  273 (288)
                             ++..+..+++|+.||+++|++..
T Consensus       269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          269 SKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence                   23345566777788888887763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=4.2e-17  Score=133.39  Aligned_cols=134  Identities=27%  Similarity=0.442  Sum_probs=116.5

Q ss_pred             CcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCC
Q psy10538        125 FRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP  202 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~  202 (288)
                      .+++++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|              +++.++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------------~l~~~~   92 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN--------------QLQSLP   92 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCC
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC--------------cCCccC
Confidence            4589999999999998766 467899999999999999988765 577888888888888              788888


Q ss_pred             hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCc
Q psy10538        203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~i  274 (288)
                      +..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+++.+|.. +..+++|+.|++++|++..-
T Consensus        93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQLQSLPDGV--FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             HhHhcCccCCCEEEcCCCcCcccCHhH--hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            887888999999999999999888753  67899999999999999988765 78899999999999988743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=6.4e-19  Score=156.48  Aligned_cols=13  Identities=23%  Similarity=0.248  Sum_probs=7.8

Q ss_pred             hccccccccccCc
Q psy10538         11 ELSSHLFRGKISE   23 (288)
Q Consensus        11 ~ls~~~~~g~~p~   23 (288)
                      +++++.+.|.+|.
T Consensus         4 ~ls~n~~~~~~~~   16 (362)
T 3goz_A            4 KLTLHPGSNPVEE   16 (362)
T ss_dssp             ECCCCTTCCHHHH
T ss_pred             ccccccchHHHHH
Confidence            4566666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.5e-17  Score=154.33  Aligned_cols=142  Identities=27%  Similarity=0.433  Sum_probs=101.3

Q ss_pred             hhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV  201 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~  201 (288)
                      +..+++|+.|++++|+++.+++ +..+++|+.|++++|.++.+| .+..+++|+              .|+|++|.++.+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~--------------~L~Ls~N~l~~l  124 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK--------------SLSLEHNGISDI  124 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC--------------EEECTTSCCCCC
T ss_pred             HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC--------------EEEecCCCCCCC
Confidence            3445555555555555554443 445555555555555555443 344444444              455555588876


Q ss_pred             ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccc
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYL  281 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l  281 (288)
                      +.  +..+++|+.|++++|.++.++.    +..+++|+.|+|++|+++.+++ +..+++|+.|+|++|+|+++| .+..+
T Consensus       125 ~~--l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l  196 (605)
T 1m9s_A          125 NG--LVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGL  196 (605)
T ss_dssp             GG--GGGCTTCSEEECCSSCCCCCGG----GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred             cc--ccCCCccCEEECCCCccCCchh----hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccC
Confidence            43  5668999999999999999853    8899999999999999998776 899999999999999999985 57777


Q ss_pred             ccccCC
Q psy10538        282 KLGRKD  287 (288)
Q Consensus       282 ~~~~~~  287 (288)
                      +.|+.|
T Consensus       197 ~~L~~L  202 (605)
T 1m9s_A          197 KNLDVL  202 (605)
T ss_dssp             TTCSEE
T ss_pred             CCCCEE
Confidence            766653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=3.3e-17  Score=145.37  Aligned_cols=153  Identities=29%  Similarity=0.330  Sum_probs=128.0

Q ss_pred             cEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccc-cCCCccEEecCCCCCcccCc-c
Q psy10538         91 SERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFF-RLNRLRKLGLSDNEIHRLPP-E  167 (288)
Q Consensus        91 ~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~-~l~~L~~L~l~~n~l~~l~~-~  167 (288)
                      +.+++++++++.+|..+                 .+.++.|++++|+|+.++. .+. .+++|+.|++++|.++.+++ .
T Consensus        21 ~~l~c~~~~l~~iP~~~-----------------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~   83 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-----------------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA   83 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-----------------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred             CEEEeCCCCcCccCccC-----------------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence            57888888877543221                 2458899999999998866 455 79999999999999998864 5


Q ss_pred             ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCC
Q psy10538        168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       168 l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                      +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.++...  +..+++|+.|++++|+
T Consensus        84 ~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           84 FVPVPNLRYLDLSSN--------------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             TTTCTTCCEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCC--------------cCCcCCHHHhCCCcCCCEEECCCCcccEECHHH--hCCcccCCEEECCCCc
Confidence            888888888888888              788888888888999999999999999885542  8899999999999999


Q ss_pred             CccCCccc----cCCCCCcEEECcCCCCCCcCc
Q psy10538        248 IHRLPPEI----QNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       248 l~~~p~~l----~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      |+.+|..+    ..+++|+.|++++|+|+.+|.
T Consensus       148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             CCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             CCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            99998764    578999999999999999885

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=3.9e-18  Score=152.58  Aligned_cols=198  Identities=18%  Similarity=0.148  Sum_probs=151.0

Q ss_pred             cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcccccCCCccEEecC
Q psy10538         83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLS  157 (288)
Q Consensus        83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~  157 (288)
                      .+..+++|+.|++++|.+..+...++..   +.. ....+..+++|++|++++|.++.     +|..+..+++|++|+++
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~---~~~-l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~  130 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEA---LRL-LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH  130 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHH---HHH-HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHhCCCccEEeCcccccCccccchhHH---HHH-HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc
Confidence            3667888888888887666443221110   000 12346788999999999999985     67788889999999999


Q ss_pred             CCCCcc-----cCccccCC---------CCCcEEEccCCCCC--------------CCccEEEccCCCCCC-----CChH
Q psy10538        158 DNEIHR-----LPPEIQNF---------ENLVELDVSRNGCN--------------RQVEYVDKRHCSLPN-----VPED  204 (288)
Q Consensus       158 ~n~l~~-----l~~~l~~~---------~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~-----~~~~  204 (288)
                      +|.++.     ++..+..+         ++|++|++++|+++              ++|++|++++|+++.     +.+.
T Consensus       131 ~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~  210 (386)
T 2ca6_A          131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE  210 (386)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence            999873     23333334         89999999999986              389999999999982     2232


Q ss_pred             HHhcCCCcceeecccCcc-----cccCCccccccCCCCccEEEccCCCCcc-----CCcccc--CCCCCcEEECcCCCCC
Q psy10538        205 VLRYFRSLEELLLDANHI-----RDLPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQ--NFENLVELDVSRNAPS  272 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l-----~~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~--~~~~L~~L~L~~N~l~  272 (288)
                      .+..+++|+.|++++|.+     ..+|..   +..+++|+.|++++|+++.     +|..+.  .+++|+.|++++|.++
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~---l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIA---LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHH---GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHH---HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            455689999999999999     457776   7889999999999999983     466664  4899999999999999


Q ss_pred             C-----cCccc-cccccccCC
Q psy10538        273 N-----VDSSM-VYLKLGRKD  287 (288)
Q Consensus       273 ~-----ip~~~-~~l~~~~~~  287 (288)
                      .     +|..+ .+++.++.+
T Consensus       288 ~~g~~~l~~~l~~~l~~L~~L  308 (386)
T 2ca6_A          288 LDAVRTLKTVIDEKMPDLLFL  308 (386)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHHHHhcCCCceEE
Confidence            7     88887 456776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=6.4e-17  Score=133.72  Aligned_cols=148  Identities=20%  Similarity=0.280  Sum_probs=120.3

Q ss_pred             EecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCC
Q psy10538         71 HYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLN  149 (288)
Q Consensus        71 ~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~  149 (288)
                      +..++.++.+|..+.  ..+++|++++|+++.++             +...|..+++|++|++++|+|+.++. .|..++
T Consensus        17 ~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~-------------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   81 (220)
T 2v70_A           17 DCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLE-------------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS   81 (220)
T ss_dssp             ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEEC-------------CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EeCCCCcccCccCCC--CCCCEEEcCCCcCCccC-------------chhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence            333444455777653  35689999999887421             23457889999999999999998765 788999


Q ss_pred             CccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538        150 RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN  228 (288)
Q Consensus       150 ~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~  228 (288)
                      +|++|++++|.++.++.. +..+++|++|++++|              +++.+++..+..+++|+.|++++|.++.+++.
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS--------------CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCC--------------cCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            999999999999988665 788888888888888              78888777778889999999999999988443


Q ss_pred             cccccCCCCccEEEccCCCCc
Q psy10538        229 YLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       229 ~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      .  +..+++|+.|++++|.+.
T Consensus       148 ~--~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          148 A--FDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             T--TTTCTTCCEEECCSCCEE
T ss_pred             H--hcCCCCCCEEEecCcCCc
Confidence            2  888999999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=8.3e-18  Score=142.87  Aligned_cols=153  Identities=23%  Similarity=0.282  Sum_probs=133.5

Q ss_pred             cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccC
Q psy10538        124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRH  195 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~  195 (288)
                      .+.++..++++++.++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|+++        .+|++|++++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            3456777889999999887 5778999999999999999988 6888999999999999887        4899999999


Q ss_pred             CCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538        196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       196 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      |+++.++...  . ++|+.|++++|.++.++.    +..+++|+.|++++|+++.++ .+..+++|+.|++++|+++++ 
T Consensus        95 N~l~~l~~~~--~-~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           95 NRLKNLNGIP--S-ACLSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SCCSCCTTCC--C-SSCCEEECCSSCCSBSGG----GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CccCCcCccc--c-CcccEEEccCCccCCChh----hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence            9999987632  2 899999999999999874    889999999999999999886 688999999999999999988 


Q ss_pred             ccccccccccCC
Q psy10538        276 SSMVYLKLGRKD  287 (288)
Q Consensus       276 ~~~~~l~~~~~~  287 (288)
                      ..+..++.++.+
T Consensus       166 ~~l~~l~~L~~L  177 (263)
T 1xeu_A          166 GGLTRLKKVNWI  177 (263)
T ss_dssp             TTSTTCCCCCEE
T ss_pred             HHhccCCCCCEE
Confidence            667777666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.4e-19  Score=169.64  Aligned_cols=180  Identities=22%  Similarity=0.291  Sum_probs=132.3

Q ss_pred             CCCccccCCCCccEEEcCCCC-ccchhhHHHhhcCCceecchHHhhcCcCCcEEE-cccCCCcccCc------cccc--C
Q psy10538         79 RGPPEINEDAAYSERVLHESR-LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELL-LDANHIRDLPK------NFFR--L  148 (288)
Q Consensus        79 ~lp~~l~~l~~l~~l~l~~n~-l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~-l~~n~i~~lp~------~~~~--l  148 (288)
                      .+|+.++.+++|++|++++|. +..++....  ..+.....+..+..+++|+.|+ ++.|.+..++.      .+..  .
T Consensus       363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~--~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~  440 (567)
T 1dce_A          363 VLQSELESCKELQELEPENKWCLLTIILLMR--ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY  440 (567)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccchhhhhHHHHHH--hcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc
Confidence            355556666666666664442 111111111  1123345667788888888888 66665544332      1111  2


Q ss_pred             CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538        149 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN  228 (288)
Q Consensus       149 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~  228 (288)
                      ..|+.|++++|.++.+|. +..+++|+.|++++|              .++.+|.. +..+++|+.|++++|.++.+| .
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N--------------~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~  503 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN--------------RLRALPPA-LAALRCLEVLQASDNALENVD-G  503 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS--------------CCCCCCGG-GGGCTTCCEEECCSSCCCCCG-G
T ss_pred             cCceEEEecCCCCCCCcC-ccccccCcEeecCcc--------------cccccchh-hhcCCCCCEEECCCCCCCCCc-c
Confidence            368899999999999987 888888888888888              78888775 556999999999999999998 5


Q ss_pred             cccccCCCCccEEEccCCCCccC--CccccCCCCCcEEECcCCCCCCcCccccc
Q psy10538        229 YLDFFRLNRLRKLGLSDNEIHRL--PPEIQNFENLVELDVSRNAPSNVDSSMVY  280 (288)
Q Consensus       229 ~~~~~~l~~L~~L~l~~n~l~~~--p~~l~~~~~L~~L~L~~N~l~~ip~~~~~  280 (288)
                         ++.+++|+.|++++|+|+.+  |..++.+++|+.|++++|+++.+|+.+..
T Consensus       504 ---l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          504 ---VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             ---GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             ---cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence               89999999999999999977  88899999999999999999988776544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=1.1e-18  Score=159.38  Aligned_cols=172  Identities=25%  Similarity=0.255  Sum_probs=129.9

Q ss_pred             CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Ccccc-----cCCCccEEecCCCCCc
Q psy10538         89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFF-----RLNRLRKLGLSDNEIH  162 (288)
Q Consensus        89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~-----~l~~L~~L~l~~n~l~  162 (288)
                      +|++|++++|+++....          ...+..+..+++|++|++++|.++.. +..+.     ..++|++|++++|.++
T Consensus        86 ~L~~L~L~~n~i~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGC----------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             CCCEEECTTSCCBGGGH----------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             ceeEEEccCCCCCHHHH----------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence            46666666665552110          11245678899999999999998732 22222     2567999999999988


Q ss_pred             c-----cCccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCC----hHHHhcCCCcceeecc
Q psy10538        163 R-----LPPEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVP----EDVLRYFRSLEELLLD  218 (288)
Q Consensus       163 ~-----l~~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~  218 (288)
                      .     ++..+..+++|++|++++|.+.               .+|++|++++|.++...    +..+..+++|++|+++
T Consensus       156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  235 (461)
T 1z7x_W          156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  235 (461)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence            4     3555677899999999999875               28999999999998743    3445568999999999


Q ss_pred             cCccccc-----CCccccccCCCCccEEEccCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538        219 ANHIRDL-----PKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       219 ~n~l~~l-----~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      +|.++..     ....  +..+++|+.|++++|.++.     ++..+..+++|+.|++++|.++
T Consensus       236 ~n~l~~~~~~~l~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          236 SNKLGDVGMAELCPGL--LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             SSBCHHHHHHHHHHHH--TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCcCChHHHHHHHHHH--hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            9998743     2221  3468899999999999995     7777888999999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=4e-17  Score=142.94  Aligned_cols=184  Identities=20%  Similarity=0.199  Sum_probs=116.4

Q ss_pred             eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCccccc
Q psy10538         69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR  147 (288)
Q Consensus        69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~  147 (288)
                      .+...++.++..++.+..+++|+++++++|.+...             -.+..+..+++|++|++++|.++ ..+..+..
T Consensus        74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~-------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS-------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH-------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             EEEcCCccccccchhhccCCCCCEEEccCCCcCHH-------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            45555555566666778889999999999876531             01233556677777777777766 45556666


Q ss_pred             CCCccEEecCCC-CCc--ccCccccCCCCCcEEEccCC-CCC-----------C-CccEEEccCCC--CC--CCChHHHh
Q psy10538        148 LNRLRKLGLSDN-EIH--RLPPEIQNFENLVELDVSRN-GCN-----------R-QVEYVDKRHCS--LP--NVPEDVLR  207 (288)
Q Consensus       148 l~~L~~L~l~~n-~l~--~l~~~l~~~~~L~~L~l~~n-~~~-----------~-~L~~L~l~~n~--l~--~~~~~~~~  207 (288)
                      +++|++|++++| .++  .++..+..+++|++|++++| .++           + +|++|++++|.  ++  .++ ..+.
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~  219 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVR  219 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHh
Confidence            777777777777 455  24555666677777777777 655           3 67777777773  33  222 2344


Q ss_pred             cCCCcceeecccCc-cc-ccCCccccccCCCCccEEEccCCC-Cc-cCCccccCCCCCcEEECcCC
Q psy10538        208 YFRSLEELLLDANH-IR-DLPKNYLDFFRLNRLRKLGLSDNE-IH-RLPPEIQNFENLVELDVSRN  269 (288)
Q Consensus       208 ~~~~L~~L~l~~n~-l~-~l~~~~~~~~~l~~L~~L~l~~n~-l~-~~p~~l~~~~~L~~L~L~~N  269 (288)
                      .+++|+.|++++|. ++ ..+..   +..+++|+.|++++|. ++ .....+..+++|+.|++++|
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHH---HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            46777777777776 44 33333   5666777777777774 32 11124566777777777776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.6e-16  Score=128.98  Aligned_cols=152  Identities=14%  Similarity=0.191  Sum_probs=124.1

Q ss_pred             cCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538         45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY  124 (288)
Q Consensus        45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~  124 (288)
                      ..++.|+.++++.+.++.                 +| .+..+++|++|++++|.+..+                ..+..
T Consensus        41 ~~l~~L~~L~l~~n~i~~-----------------l~-~l~~l~~L~~L~l~~n~~~~~----------------~~l~~   86 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-----------------LT-GIEYAHNIKDLTINNIHATNY----------------NPISG   86 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-----------------CT-TGGGCTTCSEEEEESCCCSCC----------------GGGTT
T ss_pred             hhcCCccEEeccCCCccC-----------------hH-HHhcCCCCCEEEccCCCCCcc----------------hhhhc
Confidence            456677777777776644                 66 588899999999999976632                24778


Q ss_pred             CcCCcEEEcccCCCcc-cCcccccCCCccEEecCCCCCcc-cCccccCCCCCcEEEccCCCCCCCccEEEccCCC-CCCC
Q psy10538        125 FRSLEELLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCS-LPNV  201 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~-l~~~  201 (288)
                      +++|++|++++|+++. .+..+..+++|++|++++|.++. .+..+..+++|++|++++|              . ++.+
T Consensus        87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n--------------~~i~~~  152 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--------------GAITDI  152 (197)
T ss_dssp             CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC--------------TBCCCC
T ss_pred             CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC--------------CCcccc
Confidence            9999999999999994 67788999999999999999995 5677888899999998888              5 6666


Q ss_pred             ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR  250 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~  250 (288)
                      +  .+..+++|+.|++++|.++.++.    +..+++|+.|++++|+|..
T Consensus       153 ~--~l~~l~~L~~L~l~~n~i~~~~~----l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          153 M--PLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             G--GGGGCSSCCEEECTTBCCCCCTT----GGGCSSCCEEEECBC----
T ss_pred             H--hhcCCCCCCEEECCCCCCcChHH----hccCCCCCEEEeeCcccCC
Confidence            5  36678999999999999999883    8899999999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=3.9e-16  Score=126.35  Aligned_cols=107  Identities=30%  Similarity=0.438  Sum_probs=60.4

Q ss_pred             CCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538        127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV  205 (288)
Q Consensus       127 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~  205 (288)
                      ++++|++++|.|+.+|..+..+++|+.|++++|.++.++. .|..+++|++|++++|              .++.+++..
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N--------------~l~~i~~~~   97 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN--------------RLRCIPPRT   97 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCBCCTTT
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC--------------ccCEeCHHH
Confidence            4556666666666555555555666666666666555533 3555555555555555              555555555


Q ss_pred             HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      +..+++|+.|++++|.++.+|...  +..+++|+.|++++|.+.
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCee
Confidence            555566666666666666555432  445556666666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.69  E-value=6.3e-17  Score=128.97  Aligned_cols=132  Identities=21%  Similarity=0.223  Sum_probs=104.9

Q ss_pred             hhcCcCCcEEEcccCCCcccCcccccC-CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDLPKNFFRL-NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN  200 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l-~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~  200 (288)
                      +..++++++|++++|.++.+|. +..+ ++|+.|++++|.++.+ ..+..+++|++|++++|              .++.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N--------------~l~~   78 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN--------------RICR   78 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS--------------CCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC--------------cccc
Confidence            4556788888888888887754 3444 4888888888888877 45677777777777777              7777


Q ss_pred             CChHHHhcCCCcceeecccCcccccCC--ccccccCCCCccEEEccCCCCccCCcc----ccCCCCCcEEECcCCCCC
Q psy10538        201 VPEDVLRYFRSLEELLLDANHIRDLPK--NYLDFFRLNRLRKLGLSDNEIHRLPPE----IQNFENLVELDVSRNAPS  272 (288)
Q Consensus       201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~~l~~L~~L~l~~n~l~~~p~~----l~~~~~L~~L~L~~N~l~  272 (288)
                      +++..+..+++|+.|++++|.++.+|.  .   +..+++|+.|++++|.++.+|..    +..+++|+.||++.|.+.
T Consensus        79 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~---l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           79 IGEGLDQALPDLTELILTNNSLVELGDLDP---LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECSCHHHHCTTCCEEECCSCCCCCGGGGGG---GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCcchhhcCCCCCEEECCCCcCCcchhhHh---hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777776778889999999999888876  4   77888999999999999888875    788899999999888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=4.2e-16  Score=126.01  Aligned_cols=126  Identities=24%  Similarity=0.474  Sum_probs=64.0

Q ss_pred             cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcc--ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHH
Q psy10538        129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL  206 (288)
Q Consensus       129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~  206 (288)
                      +.+++++|+++++|..+.  ..++.|++++|.++.++..  +..+++|++|++++|              .++.+++..+
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~   74 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--------------QLTGIEPNAF   74 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS--------------CCCCBCTTTT
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC--------------CCCCcCHhHc
Confidence            445555555555554332  2555555555555544432  444555555555554              4444444444


Q ss_pred             hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCC
Q psy10538        207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       207 ~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      ..+++|+.|++++|+++.++...  +..+++|++|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKM--FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSS--STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            44555555555555555444331  44555555555555555532 344555555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=1.8e-16  Score=122.75  Aligned_cols=127  Identities=22%  Similarity=0.274  Sum_probs=108.6

Q ss_pred             cCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538        124 YFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV  201 (288)
Q Consensus       124 ~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~  201 (288)
                      ..+++++|++++|.++  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|              .++..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n--------------~i~~~   79 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN--------------RVSGG   79 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS--------------CCCSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC--------------cccch
Confidence            3578999999999998  8888888999999999999999977 66778888888888888              77774


Q ss_pred             ChHHHhcCCCcceeecccCcccccC--CccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEECcC
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLP--KNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDVSR  268 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L~~  268 (288)
                      .+..+..+++|+.|++++|.++.++  ..   ++.+++|++|++++|+++.+|.    .+..+++|+.|++++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEP---LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSCCCSHHHHGG---GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHHhhhCCCCCEEECCCCcCCChHHHHH---HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            5566666899999999999999865  55   8889999999999999998876    588899999999863

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=1.2e-16  Score=139.95  Aligned_cols=186  Identities=16%  Similarity=0.151  Sum_probs=146.6

Q ss_pred             cccCC--CCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-c-cCcccccCCCccEEecCC
Q psy10538         83 EINED--AAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-D-LPKNFFRLNRLRKLGLSD  158 (288)
Q Consensus        83 ~l~~l--~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~-lp~~~~~l~~L~~L~l~~  158 (288)
                      .+..+  ..++.+++++|.+...              .+. +..+++|++|++++|.++ . +|..+..+++|++|++++
T Consensus        63 ~~~~~~~~~l~~L~l~~n~l~~~--------------~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~  127 (336)
T 2ast_B           63 VTGRLLSQGVIAFRCPRSFMDQP--------------LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG  127 (336)
T ss_dssp             HHHHHHHTTCSEEECTTCEECSC--------------CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             HHHhhhhccceEEEcCCcccccc--------------chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence            34444  6788999988877632              222 346899999999999988 3 788888899999999999


Q ss_pred             CCCc-ccCccccCCCCCcEEEccCC-CCC-----------CCccEEEccCC-CCCCC-ChHHHhcCC-CcceeecccCc-
Q psy10538        159 NEIH-RLPPEIQNFENLVELDVSRN-GCN-----------RQVEYVDKRHC-SLPNV-PEDVLRYFR-SLEELLLDANH-  221 (288)
Q Consensus       159 n~l~-~l~~~l~~~~~L~~L~l~~n-~~~-----------~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~~n~-  221 (288)
                      |.++ ..+..++.+++|++|++++| .++           ++|++|++++| .++.. .+..+..++ +|+.|++++|. 
T Consensus       128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~  207 (336)
T 2ast_B          128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  207 (336)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence            9988 56777888999999999999 666           48999999999 88853 234456688 99999999995 


Q ss_pred             -cc--ccCCccccccCCCCccEEEccCCC-Cc-cCCccccCCCCCcEEECcCCCCCCcCc---cccccccccCC
Q psy10538        222 -IR--DLPKNYLDFFRLNRLRKLGLSDNE-IH-RLPPEIQNFENLVELDVSRNAPSNVDS---SMVYLKLGRKD  287 (288)
Q Consensus       222 -l~--~l~~~~~~~~~l~~L~~L~l~~n~-l~-~~p~~l~~~~~L~~L~L~~N~l~~ip~---~~~~l~~~~~~  287 (288)
                       ++  .+|..   +..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. .-.|.   .+..++.++.+
T Consensus       208 ~~~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          208 NLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             GSCHHHHHHH---HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEE
T ss_pred             cCCHHHHHHH---HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEE
Confidence             43  56665   6789999999999999 66 667788999999999999996 22223   45556655543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=1.8e-15  Score=120.55  Aligned_cols=128  Identities=22%  Similarity=0.435  Sum_probs=87.6

Q ss_pred             CcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHH
Q psy10538        128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL  206 (288)
Q Consensus       128 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~  206 (288)
                      .+.+++++++++.+|..+  .++++.|++++|.++.++.. +..+++|++|++++|              .++.+++..+
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~~~~~~   72 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN--------------QIQSLPDGVF   72 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--------------CCCCCCTTTT
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC--------------cceEeChhHc
Confidence            456677777777776544  35777777777777766543 456666666666666              6666666666


Q ss_pred             hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCC
Q psy10538        207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSN  273 (288)
Q Consensus       207 ~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~  273 (288)
                      ..+++|+.|++++|.++.+|...  +..+++|++|++++|+++.+|.. +..+++|+.|++++|++..
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPNGV--FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCccCEEECCCCCccccCHHH--hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66777777777777777766542  56677777777777777766654 4667777777777777763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=8.7e-16  Score=121.23  Aligned_cols=137  Identities=28%  Similarity=0.315  Sum_probs=107.1

Q ss_pred             CCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc-cC
Q psy10538         87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR-LP  165 (288)
Q Consensus        87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~-l~  165 (288)
                      .+.++++++++|++..         .   .+ +..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|
T Consensus        23 ~~~L~~L~l~~n~l~~---------~---~i-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSND---------G---KI-EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBT---------T---BC-SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCCh---------h---hH-HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHH
Confidence            4678888998887761         0   11 22356778899999999998877 677788899999999999886 66


Q ss_pred             ccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh-HHHhcCCCcceeecccCcccccCC----ccccccCCCCccE
Q psy10538        166 PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDLPK----NYLDFFRLNRLRK  240 (288)
Q Consensus       166 ~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~----~~~~~~~l~~L~~  240 (288)
                      ..+..+++|++|++++|              .++.++. ..+..+++|+.|++++|.++.+|.    .   +..+++|++
T Consensus        89 ~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~---~~~l~~L~~  151 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGN--------------KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV---FKLLPQLTY  151 (168)
T ss_dssp             HHHHHCTTCCEEECBSS--------------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH---HTTCSSCCE
T ss_pred             HHHhhCCCCCEEeccCC--------------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH---HHhCccCcE
Confidence            66666888888888888              7777653 456678889999999999988876    4   778899999


Q ss_pred             EEccCCCCccCCcc
Q psy10538        241 LGLSDNEIHRLPPE  254 (288)
Q Consensus       241 L~l~~n~l~~~p~~  254 (288)
                      |++++|.+.++|.+
T Consensus       152 L~l~~n~~~~~~~~  165 (168)
T 2ell_A          152 LDGYDREDQEAPDS  165 (168)
T ss_dssp             ETTEETTSCBCCSS
T ss_pred             ecCCCCChhhcccc
Confidence            99999998888754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=3.3e-16  Score=137.13  Aligned_cols=218  Identities=11%  Similarity=0.107  Sum_probs=140.0

Q ss_pred             CccccEEeeCCCccccccCcc------ceEEecCCCCCCCCc-cccC--------CCCccEEEcCCCCccchhhHHHhhc
Q psy10538         47 ASSIREYLCHKTYLAAEEAFN------EWFHYYNSTKPRGPP-EINE--------DAAYSERVLHESRLQQYEEVVAEWT  111 (288)
Q Consensus        47 l~~L~~l~~~~~~l~~l~~~~------~~l~~~~~~~~~lp~-~l~~--------l~~l~~l~l~~n~l~~l~~~~~~~~  111 (288)
                      +++|+.++++.+.+.......      .......+   .+|+ .+..        +++|+.+++.. +++          
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~----------  113 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK----------  113 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCC----------
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-ccc----------
Confidence            677777777777776211110      11222222   2332 3334        56666666555 443          


Q ss_pred             CCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCC----cccC-ccccCCCC------------
Q psy10538        112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEI----HRLP-PEIQNFEN------------  173 (288)
Q Consensus       112 ~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l----~~l~-~~l~~~~~------------  173 (288)
                          .+++.+|.++++|+.+++++|.+..+++ +|....++..+....+..    ..+. ..+..+..            
T Consensus       114 ----~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~  189 (329)
T 3sb4_A          114 ----NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK  189 (329)
T ss_dssp             ----EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred             ----chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence                5566666677777777777776665543 454444555554444211    1111 11222222            


Q ss_pred             --------------CcEEEccCCC----------CCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcc
Q psy10538        174 --------------LVELDVSRNG----------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY  229 (288)
Q Consensus       174 --------------L~~L~l~~n~----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~  229 (288)
                                    ++.+.+.++-          .-.+|+.+++.+|+++.++...|..+++|+.+++.+| ++.++...
T Consensus       190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a  268 (329)
T 3sb4_A          190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV  268 (329)
T ss_dssp             HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence                          2233333221          0258999999999999999999999999999999998 88898864


Q ss_pred             ccccCCCCcc-EEEccCCCCccCC-ccccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538        230 LDFFRLNRLR-KLGLSDNEIHRLP-PEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK  286 (288)
Q Consensus       230 ~~~~~l~~L~-~L~l~~n~l~~~p-~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~  286 (288)
                        |.++.+|+ .+.+.+ .++.++ ..|.++++|+.+++++|.++.|++. +..++.++.
T Consensus       269 --F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          269 --FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             --TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             --hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence              88999999 999988 888776 4689999999999999999999884 446666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=6.4e-17  Score=155.87  Aligned_cols=168  Identities=22%  Similarity=0.335  Sum_probs=103.8

Q ss_pred             ccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcccc
Q psy10538         90 YSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ  169 (288)
Q Consensus        90 l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~  169 (288)
                      ++.++|+.+.+..+...    .+.+ .++++.|..++.|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..+.
T Consensus       193 l~~l~Ls~~~i~~~~~~----~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  267 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDI----ENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK  267 (727)
T ss_dssp             ----------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG
T ss_pred             hhcCccCcccccCcccc----ccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhh
Confidence            44555555555543211    1222 256777888999999999999999998888889999999999999998898888


Q ss_pred             CCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       170 ~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      .+++|++|++++|              .++.+|..+ ..+++|+.|++++|.++.+|..   ++.+++|+.|+|++|.++
T Consensus       268 ~l~~L~~L~Ls~N--------------~l~~lp~~~-~~l~~L~~L~L~~N~l~~lp~~---~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          268 NLSNLRVLDLSHN--------------RLTSLPAEL-GSCFQLKYFYFFDNMVTTLPWE---FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GGTTCCEEECTTS--------------CCSSCCSSG-GGGTTCSEEECCSSCCCCCCSS---TTSCTTCCCEECTTSCCC
T ss_pred             CCCCCCEEeCcCC--------------cCCccChhh-cCCCCCCEEECCCCCCCccChh---hhcCCCccEEeCCCCccC
Confidence            8888888888888              777776654 4578888888888888888887   788888888888888888


Q ss_pred             -cCCccccCCC-CCcEEECcCCCCC-CcCccccc
Q psy10538        250 -RLPPEIQNFE-NLVELDVSRNAPS-NVDSSMVY  280 (288)
Q Consensus       250 -~~p~~l~~~~-~L~~L~L~~N~l~-~ip~~~~~  280 (288)
                       .+|..+.... .+..+++++|.++ .+|..+..
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~  363 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF  363 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred             CCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence             4444443221 1122444455444 44444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=8.4e-17  Score=150.82  Aligned_cols=162  Identities=19%  Similarity=0.186  Sum_probs=131.8

Q ss_pred             CCCCccccCCCCccEEE-cCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEec
Q psy10538         78 PRGPPEINEDAAYSERV-LHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGL  156 (288)
Q Consensus        78 ~~lp~~l~~l~~l~~l~-l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l  156 (288)
                      +..|..++.+++|+.++ ++.|.+..++..... .+.+..+++      ..|+.|++++|.|+.+|. +..+++|+.|++
T Consensus       399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~-~n~i~~l~~------~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~L  470 (567)
T 1dce_A          399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL-ENSVLKMEY------ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDL  470 (567)
T ss_dssp             GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHHHHH------TTCSEEECTTSCCSSCCC-GGGGTTCCEEEC
T ss_pred             cCCHHHHHHHHhcccCcchhhcccchhhhhhhh-cccccccCc------cCceEEEecCCCCCCCcC-ccccccCcEeec
Confidence            44566777888888888 777776666554322 223333322      358999999999999987 899999999999


Q ss_pred             CCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc--CCccccccC
Q psy10538        157 SDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL--PKNYLDFFR  234 (288)
Q Consensus       157 ~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~~~~~~~~  234 (288)
                      ++|.++.+|..++.+++|++|++++|              .++.+|  .+..+++|+.|++++|.++.+  |..   ++.
T Consensus       471 s~N~l~~lp~~~~~l~~L~~L~Ls~N--------------~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~---l~~  531 (567)
T 1dce_A          471 SHNRLRALPPALAALRCLEVLQASDN--------------ALENVD--GVANLPRLQELLLCNNRLQQSAAIQP---LVS  531 (567)
T ss_dssp             CSSCCCCCCGGGGGCTTCCEEECCSS--------------CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGG---GGG
T ss_pred             CcccccccchhhhcCCCCCEEECCCC--------------CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHH---Hhc
Confidence            99999999999999999999999998              777776  466799999999999999988  776   899


Q ss_pred             CCCccEEEccCCCCccCCccc----cCCCCCcEEEC
Q psy10538        235 LNRLRKLGLSDNEIHRLPPEI----QNFENLVELDV  266 (288)
Q Consensus       235 l~~L~~L~l~~n~l~~~p~~l----~~~~~L~~L~L  266 (288)
                      +++|+.|++++|+++.+|+..    ..+++|+.|++
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999999999777643    34889999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=6.1e-15  Score=119.32  Aligned_cols=88  Identities=27%  Similarity=0.438  Sum_probs=41.6

Q ss_pred             hhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP  199 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~  199 (288)
                      |..+++|++|++++|.|+.++. .|..+++|+.|++++|.++.+++ .+..+++|++|++++|              .++
T Consensus        50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N--------------~l~  115 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN--------------DIS  115 (193)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS--------------CCC
T ss_pred             hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC--------------CCC
Confidence            4444555555555555554432 34445555555555555554432 2444444444444444              444


Q ss_pred             CCChHHHhcCCCcceeecccCccc
Q psy10538        200 NVPEDVLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       200 ~~~~~~~~~~~~L~~L~l~~n~l~  223 (288)
                      .+++..+..+++|+.+++++|.+.
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          116 VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             eeChhhhhcCccccEEEeCCCCee
Confidence            444444444455555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.1e-15  Score=116.59  Aligned_cols=121  Identities=23%  Similarity=0.267  Sum_probs=104.3

Q ss_pred             CCCccEEecCCCCCc--ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc-
Q psy10538        148 LNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD-  224 (288)
Q Consensus       148 l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-  224 (288)
                      .++++.|++++|.++  .+|..+..+++|++|++++|              .++.+  ..+..+++|+.|++++|.++. 
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~--~~~~~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--------------GLTSI--ANLPKLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS--------------CCCCC--TTCCCCTTCCEEECCSSCCCSC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC--------------CCCCc--hhhhcCCCCCEEECCCCcccch
Confidence            578999999999998  78888888899999999888              66665  445668999999999999997 


Q ss_pred             cCCccccccCCCCccEEEccCCCCccCC--ccccCCCCCcEEECcCCCCCCcCc----cccccccccCC
Q psy10538        225 LPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNAPSNVDS----SMVYLKLGRKD  287 (288)
Q Consensus       225 l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~L~~L~L~~N~l~~ip~----~~~~l~~~~~~  287 (288)
                      +|..   ++.+++|++|++++|+++.+|  ..+..+++|+.|++++|+++.+|.    .+..++.++.+
T Consensus        80 ~~~~---~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           80 LEVL---AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             THHH---HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             HHHH---hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            7665   667999999999999999765  779999999999999999998886    67778877765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=3.1e-15  Score=144.09  Aligned_cols=134  Identities=23%  Similarity=0.251  Sum_probs=103.9

Q ss_pred             cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhc
Q psy10538        129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY  208 (288)
Q Consensus       129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~  208 (288)
                      ..+++..|++...|..+..++.|+.|++++|.+..+|..+..+++|++|++++|              .++.+|..+ ..
T Consensus       204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N--------------~l~~lp~~~-~~  268 (727)
T 4b8c_D          204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN--------------SLTELPAEI-KN  268 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS--------------CCSCCCGGG-GG
T ss_pred             cCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC--------------cCcccChhh-hC
Confidence            334555555555567788899999999999999999988888888888888888              788888664 66


Q ss_pred             CCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccc
Q psy10538        209 FRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVY  280 (288)
Q Consensus       209 ~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~  280 (288)
                      +++|+.|++++|.++.+|..   ++.+++|++|+|++|.|+.+|..|+.+++|+.|+|++|+++ .+|..+..
T Consensus       269 l~~L~~L~Ls~N~l~~lp~~---~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLTSLPAE---LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             GTTCCEEECTTSCCSSCCSS---GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCCCEEeCcCCcCCccChh---hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            99999999999999999998   89999999999999999999999999999999999999999 45555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=1.4e-14  Score=117.04  Aligned_cols=88  Identities=22%  Similarity=0.354  Sum_probs=41.1

Q ss_pred             hhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLP  199 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~  199 (288)
                      |..+++|++|++++|.|+.+ |..+..+++|+.|++++|.++.++.. +..+++|++|++++|              +++
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~  115 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN--------------QIS  115 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS--------------CCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC--------------cCC
Confidence            44445555555555555533 33444455555555555555544322 444444444444444              444


Q ss_pred             CCChHHHhcCCCcceeecccCccc
Q psy10538        200 NVPEDVLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       200 ~~~~~~~~~~~~L~~L~l~~n~l~  223 (288)
                      .+++..+..+++|+.+++++|.++
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCcc
Confidence            333333444445555555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=7.5e-15  Score=116.83  Aligned_cols=125  Identities=22%  Similarity=0.267  Sum_probs=104.2

Q ss_pred             ccccCCCccEEecCCCCCcccCccccCC-CCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcc
Q psy10538        144 NFFRLNRLRKLGLSDNEIHRLPPEIQNF-ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI  222 (288)
Q Consensus       144 ~~~~l~~L~~L~l~~n~l~~l~~~l~~~-~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  222 (288)
                      .+..+.+|+.|++++|.++.+|. +..+ ++|++|++++|              .++.+  ..+..+++|+.|++++|.+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N--------------~l~~~--~~l~~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN--------------EIRKL--DGFPLLRRLKTLLVNNNRI   76 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS--------------CCCEE--CCCCCCSSCCEEECCSSCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC--------------CCCcc--cccccCCCCCEEECCCCcc
Confidence            45668899999999999998865 4444 48888888888              55554  2355689999999999999


Q ss_pred             cccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCcCcc----ccccccccCC
Q psy10538        223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNVDSS----MVYLKLGRKD  287 (288)
Q Consensus       223 ~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~ip~~----~~~l~~~~~~  287 (288)
                      +.+|+..  +..+++|++|++++|+++.+|.  .+..+++|+.|++++|++..+|..    +..++.++.+
T Consensus        77 ~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A           77 CRIGEGL--DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             CEECSCH--HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             cccCcch--hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence            9998762  4789999999999999999887  789999999999999999999885    7777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.55  E-value=3.9e-14  Score=112.63  Aligned_cols=105  Identities=24%  Similarity=0.377  Sum_probs=57.5

Q ss_pred             cEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHh
Q psy10538        129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLR  207 (288)
Q Consensus       129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~  207 (288)
                      +.+++++|+++++|..+.  +.|+.|++++|.++.+ |..+..+++|++|++++|              +++.+++..+.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~i~~~~~~   78 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN--------------KLTAIPTGVFD   78 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTT
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC--------------CCCccChhHhC
Confidence            456666666666655442  5566666666666554 333555555555555555              55555555554


Q ss_pred             cCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC
Q psy10538        208 YFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL  251 (288)
Q Consensus       208 ~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~  251 (288)
                      .+++|+.|++++|.++.+|...  +..+++|++|++++|.+...
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGA--FDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTT--TTTCTTCSEEECCSSCBCTT
T ss_pred             CcchhhEEECCCCccceeCHHH--hccccCCCEEEeCCCCcccc
Confidence            5555555555555555555432  44555555555555555533

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1e-13  Score=110.21  Aligned_cols=108  Identities=34%  Similarity=0.555  Sum_probs=79.2

Q ss_pred             cCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538        126 RSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE  203 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~  203 (288)
                      +++++|++++|+++.+|. .+..+++|++|++++|.++.++.. +..+++|++|++++|              +++.+++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N--------------~l~~~~~   93 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN--------------KLQSLPN   93 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCT
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC--------------CccccCH
Confidence            467777788777776654 456677788888888877776554 566777777777776              6677777


Q ss_pred             HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      ..+..+++|+.|++++|.++.+|...  +..+++|++|++++|.++
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           94 GVFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBC
T ss_pred             HHhhCCcccCEEECcCCcceEeCHHH--hcCCcccCEEEecCCCee
Confidence            66666778888888888888777652  466788888888888776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=9.6e-14  Score=109.89  Aligned_cols=104  Identities=24%  Similarity=0.397  Sum_probs=68.8

Q ss_pred             CcEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHH
Q psy10538        128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL  206 (288)
Q Consensus       128 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~  206 (288)
                      .+.+++++|.++++|..+  .+.++.|++++|.++.+ |..+..+++|++|++++|              +++.+++..+
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~l~~~~f   74 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--------------QLTVLPAGVF   74 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--------------CCCCCCTTTT
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--------------CcCccChhhc
Confidence            456777777777777654  36677777777777766 344666666666666666              6666666666


Q ss_pred             hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       207 ~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      ..+++|+.|++++|.++.+|...  +..+++|+.|++++|+++
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGA--FDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCBC
T ss_pred             cCCCCCCEEECCCCccCEeCHHH--hcCCCCCCEEEeCCCCCC
Confidence            66677777777777777666532  556667777777777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1e-16  Score=130.19  Aligned_cols=157  Identities=20%  Similarity=0.268  Sum_probs=105.7

Q ss_pred             CCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC
Q psy10538         86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP  165 (288)
Q Consensus        86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~  165 (288)
                      ....++.++++.+.+..       ..+.+..++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|
T Consensus        16 ~~~~l~~l~l~~~~l~~-------~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~   86 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHG-------MIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE   86 (198)
T ss_dssp             HTTCCCCTTCSEEECCB-------CCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS
T ss_pred             hcccccCcchheeEecc-------ccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc
Confidence            34445555555555542       1122333322 5677777777777777777776 6667777777777777777776


Q ss_pred             ccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCC--ccccccCCCCccEEEc
Q psy10538        166 PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK--NYLDFFRLNRLRKLGL  243 (288)
Q Consensus       166 ~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~~l~~L~~L~l  243 (288)
                      ..+..+++|++|++++|              .++.++ . +..+++|+.|++++|.++.++.  .   +..+++|++|++
T Consensus        87 ~~~~~~~~L~~L~L~~N--------------~l~~l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~---l~~l~~L~~L~l  147 (198)
T 1ds9_A           87 NLDAVADTLEELWISYN--------------QIASLS-G-IEKLVNLRVLYMSNNKITNWGEIDK---LAALDKLEDLLL  147 (198)
T ss_dssp             SHHHHHHHCSEEEEEEE--------------ECCCHH-H-HHHHHHSSEEEESEEECCCHHHHHH---HTTTTTCSEEEE
T ss_pred             chhhcCCcCCEEECcCC--------------cCCcCC-c-cccCCCCCEEECCCCcCCchhHHHH---HhcCCCCCEEEe
Confidence            65555566666666666              666665 2 4557888999999988887664  3   678888999999


Q ss_pred             cCCCCccC-Cc----------cccCCCCCcEEECcCCCCC
Q psy10538        244 SDNEIHRL-PP----------EIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       244 ~~n~l~~~-p~----------~l~~~~~L~~L~L~~N~l~  272 (288)
                      ++|+++.. |.          .+..+++|+.||  +|.++
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            98888743 22          267788888887  66665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=1.8e-16  Score=128.71  Aligned_cols=117  Identities=26%  Similarity=0.362  Sum_probs=91.2

Q ss_pred             CcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538        138 IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL  217 (288)
Q Consensus       138 i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  217 (288)
                      ++++|..+..+++|+.|++++|.++.+| .+..+++|++|++++|              .++.+|.. +..+++|+.|++
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n--------------~l~~l~~~-~~~~~~L~~L~L  100 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN--------------LIKKIENL-DAVADTLEELWI  100 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE--------------EECSCSSH-HHHHHHCSEEEE
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC--------------Ccccccch-hhcCCcCCEEEC
Confidence            3344457888888999999988888887 7777788888888877              66666653 344678888999


Q ss_pred             ccCcccccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCc
Q psy10538        218 DANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNV  274 (288)
Q Consensus       218 ~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~i  274 (288)
                      ++|.++.+| .   +..+++|+.|++++|+++.++.  .+..+++|+.|++++|++...
T Consensus       101 ~~N~l~~l~-~---~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          101 SYNQIASLS-G---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEECCCHH-H---HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCcCC-c---cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            988888877 3   6778888899999888887664  678888899999998888743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=3.7e-13  Score=106.47  Aligned_cols=74  Identities=26%  Similarity=0.439  Sum_probs=36.5

Q ss_pred             CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538        197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS  272 (288)
Q Consensus       197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~  272 (288)
                      .++.+++..+..+++|+.|++++|+++.+|...  +..+++|++|++++|+|+.+|.. +..+++|+.|++++|++.
T Consensus        41 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           41 QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCccChhhhcCcccCCEEECCCCCcCccChhh--ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            444444444444555555555555555544431  34455555555555555544432 444555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=4.8e-13  Score=106.30  Aligned_cols=78  Identities=21%  Similarity=0.407  Sum_probs=38.0

Q ss_pred             CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCcC
Q psy10538        197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      .++.+++..+..+++|+.|++++|+++.+|...  +..+++|++|++++|+|+.+|.. +..+++|+.|++++|++...+
T Consensus        44 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           44 QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV--FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccccCHHHhcCCcCCCEEECCCCCCCccChhH--hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            444444444444555555555555555554431  34455555555555555544443 444555555555555554433


Q ss_pred             c
Q psy10538        276 S  276 (288)
Q Consensus       276 ~  276 (288)
                      .
T Consensus       122 ~  122 (174)
T 2r9u_A          122 R  122 (174)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=5.4e-14  Score=132.14  Aligned_cols=194  Identities=14%  Similarity=0.107  Sum_probs=118.7

Q ss_pred             CCCCCccccCCCCccEEEcCCCCccchhh-HHHhhcCCceecc----------hHHhhcCcCCcEEEccc----------
Q psy10538         77 KPRGPPEINEDAAYSERVLHESRLQQYEE-VVAEWTSKLKLYS----------KDVLRYFRSLEELLLDA----------  135 (288)
Q Consensus        77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~-~~~~~~~~l~~~~----------~~~~~~l~~L~~L~l~~----------  135 (288)
                      ...+|..+..+++|++|++++|.+..... .+.....++..+.          +..+..+++|++|++++          
T Consensus       282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~  361 (592)
T 3ogk_B          282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE  361 (592)
T ss_dssp             TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred             hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence            34456666677788888888887553221 1112222332221          22234567777777772          


Q ss_pred             -CCCc--ccCcccccCCCccEEecCCCCCcc-cCccccC-CCCCcEEEcc----CCCCC---------------CCccEE
Q psy10538        136 -NHIR--DLPKNFFRLNRLRKLGLSDNEIHR-LPPEIQN-FENLVELDVS----RNGCN---------------RQVEYV  191 (288)
Q Consensus       136 -n~i~--~lp~~~~~l~~L~~L~l~~n~l~~-l~~~l~~-~~~L~~L~l~----~n~~~---------------~~L~~L  191 (288)
                       +.++  .++.....+++|+.|+++.+.++. .+..+.. +++|+.|+++    .|.++               ++|++|
T Consensus       362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L  441 (592)
T 3ogk_B          362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF  441 (592)
T ss_dssp             TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence             4555  223333446777777777666662 2333433 6677777775    44444               367778


Q ss_pred             EccCCC--CCCC-ChHHHhcCCCcceeecccCcccc--cCCccccccCCCCccEEEccCCCCc--cCCccccCCCCCcEE
Q psy10538        192 DKRHCS--LPNV-PEDVLRYFRSLEELLLDANHIRD--LPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNFENLVEL  264 (288)
Q Consensus       192 ~l~~n~--l~~~-~~~~~~~~~~L~~L~l~~n~l~~--l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~~~L~~L  264 (288)
                      ++++|.  ++.. .......+++|+.|++++|.++.  ++..   +.++++|+.|++++|.++  .++.....+++|+.|
T Consensus       442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH---HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH---HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence            876544  4421 22333447788888888888773  4443   567888999999999887  344445678889999


Q ss_pred             ECcCCCCCC
Q psy10538        265 DVSRNAPSN  273 (288)
Q Consensus       265 ~L~~N~l~~  273 (288)
                      ++++|++++
T Consensus       519 ~ls~n~it~  527 (592)
T 3ogk_B          519 WVQGYRASM  527 (592)
T ss_dssp             EEESCBCCT
T ss_pred             ECcCCcCCH
Confidence            999998873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=2e-12  Score=112.98  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=111.8

Q ss_pred             CCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCC----cccC-cccc---
Q psy10538         76 TKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHI----RDLP-KNFF---  146 (288)
Q Consensus        76 ~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i----~~lp-~~~~---  146 (288)
                      .+..+++ .+..|++|+.+++..|.+.              .+++.+|.+..++..+....+..    ..+. ..|.   
T Consensus       111 ~i~~I~~~aF~~~~~L~~l~l~~n~i~--------------~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          111 KIKNIEDAAFKGCDNLKICQIRKKTAP--------------NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             TCCEECTTTTTTCTTCCEEEBCCSSCC--------------EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cccchhHHHhhcCcccceEEcCCCCcc--------------ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            3455654 5778999999999998777              45666677766666665544211    1111 0111   


Q ss_pred             -----------------------------------------------cCCCccEEecCCCCCcccCcc-ccCCCCCcEEE
Q psy10538        147 -----------------------------------------------RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELD  178 (288)
Q Consensus       147 -----------------------------------------------~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~  178 (288)
                                                                     .+++|+.+++++|.++.+|.. |..+.+|+.++
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence                                                           145566666666666666543 55555555555


Q ss_pred             ccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcc-eeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-ccc
Q psy10538        179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLE-ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQ  256 (288)
Q Consensus       179 l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~  256 (288)
                      +.              +| ++.++...|..+++|+ .+++.+ .++.++...  |.++++|+.+++.+|.++.++. .|.
T Consensus       257 l~--------------~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a--F~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          257 LP--------------HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA--FMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             CC--------------TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT--TTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             CC--------------cc-cceehHHHhhCChhccEEEEEcc-cceEEchhh--hhCCccCCEEEeCCCccCccchhhhc
Confidence            54              43 7788889999999999 999988 888888653  8899999999999999998876 688


Q ss_pred             CCCCCcEEEC
Q psy10538        257 NFENLVELDV  266 (288)
Q Consensus       257 ~~~~L~~L~L  266 (288)
                      ++++|+.+..
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence            9999998864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.39  E-value=1.4e-13  Score=129.22  Aligned_cols=145  Identities=12%  Similarity=0.063  Sum_probs=107.1

Q ss_pred             hhcCcCCcEEEcccCCCc-ccCccccc-CCCccEEecC----CCCCcccC------ccccCCCCCcEEEccCCC--CC--
Q psy10538        122 LRYFRSLEELLLDANHIR-DLPKNFFR-LNRLRKLGLS----DNEIHRLP------PEIQNFENLVELDVSRNG--CN--  185 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~-~lp~~~~~-l~~L~~L~l~----~n~l~~l~------~~l~~~~~L~~L~l~~n~--~~--  185 (288)
                      ...+++|++|+++.+.++ ..+..+.. +++|+.|+++    .|.++..|      ..+..+++|+.|+++++.  ++  
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            456899999999999988 33445544 8899999996    56676543      225668999999997543  33  


Q ss_pred             ---------CCccEEEccCCCCCCC-ChHHHhcCCCcceeecccCcccc--cCCccccccCCCCccEEEccCCCCccC--
Q psy10538        186 ---------RQVEYVDKRHCSLPNV-PEDVLRYFRSLEELLLDANHIRD--LPKNYLDFFRLNRLRKLGLSDNEIHRL--  251 (288)
Q Consensus       186 ---------~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~--l~~~~~~~~~l~~L~~L~l~~n~l~~~--  251 (288)
                               ++|++|++++|+++.. .+.....+++|+.|++++|.++.  ++..   +..+++|+.|++++|+++..  
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA---VTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH---HHHCSSCCEEEEESCBCCTTCT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH---HHhcCccCeeECcCCcCCHHHH
Confidence                     5799999999998742 23455678999999999999873  4443   56789999999999999843  


Q ss_pred             CccccCCCCCcEEECcCC
Q psy10538        252 PPEIQNFENLVELDVSRN  269 (288)
Q Consensus       252 p~~l~~~~~L~~L~L~~N  269 (288)
                      ..-...++.+....+..+
T Consensus       531 ~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          531 DLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             TGGGGCCTTEEEEEECCC
T ss_pred             HHHHHhCCCcEEEEecCc
Confidence            222346777766655554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.28  E-value=2.1e-12  Score=121.26  Aligned_cols=61  Identities=21%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             CCCcceeecccCcccccC-CccccccCCCCccEEEccCCCCcc--CCccccCCCCCcEEECcCCCC
Q psy10538        209 FRSLEELLLDANHIRDLP-KNYLDFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVELDVSRNAP  271 (288)
Q Consensus       209 ~~~L~~L~l~~n~l~~l~-~~~~~~~~l~~L~~L~l~~n~l~~--~p~~l~~~~~L~~L~L~~N~l  271 (288)
                      +++|+.|++++|.++... ..+  ...+++|+.|++++|.++.  ++.....+++|+.|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l--~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHV--LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHH--HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHH--HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            455555555555554211 110  1345566666666666541  111233455666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.3e-12  Score=116.17  Aligned_cols=159  Identities=22%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             CCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh-cCcCCcEEEcccCCCcc--cCcccccCCCccEEecCCCCCcc
Q psy10538         87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR-YFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHR  163 (288)
Q Consensus        87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~l~~  163 (288)
                      .+.++.+++++|.++.......          ...+. ..++|++|++++|.++.  +..-...+++|+.|++++|.++.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l----------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~  140 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVV----------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP  140 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHH----------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred             HhhCCEEEecCCCCCHHHHHHH----------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence            3457777887777663221100          01111 23577788888887762  22222235677788888887763


Q ss_pred             c-----Cccc-cCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh----HHHhcCCCcceeecccCcccc-----cCCc
Q psy10538        164 L-----PPEI-QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE----DVLRYFRSLEELLLDANHIRD-----LPKN  228 (288)
Q Consensus       164 l-----~~~l-~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~-----l~~~  228 (288)
                      .     ...+ ...+.|++|++++|              .++....    ..+...++|++|++++|.++.     ++..
T Consensus       141 ~~~~~L~~~L~~~~~~L~~L~Ls~n--------------~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          141 EACKDLRDLLLHDQCQITTLRLSNN--------------PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             HHHHHHHHHHHSTTCCCCEEECCSS--------------CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccceeeCCCC--------------CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            2     1122 23456777777766              4432111    112334555555555555552     1222


Q ss_pred             cccccCCCCccEEEccCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538        229 YLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       229 ~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                         +...++|+.|++++|.|+.     ++..+...++|+.|++++|.|+
T Consensus       207 ---L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          207 ---LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             ---GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             ---HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence               3444555566666555552     2223344455566666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=3.5e-11  Score=105.67  Aligned_cols=104  Identities=21%  Similarity=0.304  Sum_probs=86.4

Q ss_pred             cEEEcccC-CCcccCcccccCCCccEEecCC-CCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538        129 EELLLDAN-HIRDLPKNFFRLNRLRKLGLSD-NEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV  205 (288)
Q Consensus       129 ~~L~l~~n-~i~~lp~~~~~l~~L~~L~l~~-n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~  205 (288)
                      ..++.+++ +++.+|. +..+++|+.|++++ |.++.+++ .|..+++|++|++++|              +++.+++..
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N--------------~l~~~~~~~   75 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--------------GLRFVAPDA   75 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS--------------CCCEECTTG
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC--------------ccceeCHHH
Confidence            35688888 8999998 88889999999996 99998874 5888888888888888              788888888


Q ss_pred             HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc
Q psy10538        206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR  250 (288)
Q Consensus       206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~  250 (288)
                      +..+++|+.|+|++|.++.+|...  +..+ .|+.|++.+|.+..
T Consensus        76 ~~~l~~L~~L~l~~N~l~~~~~~~--~~~~-~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNALESLSWKT--VQGL-SLQELVLSGNPLHC  117 (347)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTT--TCSC-CCCEEECCSSCCCC
T ss_pred             hcCCcCCCEEeCCCCccceeCHHH--cccC-CceEEEeeCCCccC
Confidence            888999999999999999988762  3334 49999999999873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.22  E-value=1e-10  Score=104.89  Aligned_cols=183  Identities=16%  Similarity=0.230  Sum_probs=112.3

Q ss_pred             CCccEEEcCCCCccchhhHHHhh--------cCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCC
Q psy10538         88 AAYSERVLHESRLQQYEEVVAEW--------TSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN  159 (288)
Q Consensus        88 ~~l~~l~l~~n~l~~l~~~~~~~--------~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n  159 (288)
                      .+|+.+.+..+ ++.++......        .+.+..+...+|.++++|+.+++.+|+++.++.......+|+.+.+..+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~  213 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT  213 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred             CCccEEEeCCC-ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence            35777776654 44443322211        1356677788899999999999999888888775444678888888744


Q ss_pred             CCcccCc-cccCCCCCcEEEccCCC---------------------CC----------CCccEEEccCCCCC-----CCC
Q psy10538        160 EIHRLPP-EIQNFENLVELDVSRNG---------------------CN----------RQVEYVDKRHCSLP-----NVP  202 (288)
Q Consensus       160 ~l~~l~~-~l~~~~~L~~L~l~~n~---------------------~~----------~~L~~L~l~~n~l~-----~~~  202 (288)
                       ++.++. .|..+++|+.+.+..+-                     ++          .+|+.+++.+|.+.     .++
T Consensus       214 -l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~  292 (401)
T 4fdw_A          214 -LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH  292 (401)
T ss_dssp             -CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred             -hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence             666643 36666677777766541                     10          25555555554443     355


Q ss_pred             hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcc
Q psy10538        203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSS  277 (288)
Q Consensus       203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~  277 (288)
                      ...|..+++|+.+++. +.++.++...  |.++.+|+.+.+..+ ++.++. .|.++ +|+.+++.+|.+..++..
T Consensus       293 ~~aF~~c~~L~~l~l~-~~i~~I~~~a--F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          293 PYCLEGCPKLARFEIP-ESIRILGQGL--LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTTTTTCTTCCEECCC-TTCCEECTTT--TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             HHHhhCCccCCeEEeC-CceEEEhhhh--hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence            5555556666666665 3355555542  566667777776433 555543 46666 777777777766655443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=6.7e-11  Score=103.86  Aligned_cols=104  Identities=22%  Similarity=0.314  Sum_probs=85.1

Q ss_pred             cEEEcCCC-CccchhhHHHhhcCCceecchHHhhcCcCCcEEEccc-CCCcccC-cccccCCCccEEecCCCCCcccCc-
Q psy10538         91 SERVLHES-RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDA-NHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPP-  166 (288)
Q Consensus        91 ~~l~l~~n-~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~-n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-  166 (288)
                      ..++++++ +++              .++.  +..+++|++|++++ |.|+.+| ..|..+++|+.|++++|.++.+++ 
T Consensus        11 ~~v~~~~~n~l~--------------~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A           11 SGLRCTRDGALD--------------SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             SCEECCSSCCCT--------------TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             CEEEcCCCCCCC--------------ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence            44577776 565              4444  67788999999996 9999887 478899999999999999997755 


Q ss_pred             cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc
Q psy10538        167 EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL  225 (288)
Q Consensus       167 ~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  225 (288)
                      .|..+++|+.|++++|              +++.+|+..+..++ |+.|++.+|.++..
T Consensus        75 ~~~~l~~L~~L~l~~N--------------~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           75 AFHFTPRLSRLNLSFN--------------ALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             GGGSCSCCCEEECCSS--------------CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             HhcCCcCCCEEeCCCC--------------ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            5788999999998888              88888888777655 99999999998743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.19  E-value=3e-10  Score=101.87  Aligned_cols=182  Identities=11%  Similarity=0.137  Sum_probs=139.9

Q ss_pred             cccCCCCccEEEcCCCCccchhhHHHh--------hcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccE
Q psy10538         83 EINEDAAYSERVLHESRLQQYEEVVAE--------WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRK  153 (288)
Q Consensus        83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~--------~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~  153 (288)
                      .+..|.+|+.+++..|++..++.....        ..+.+..+...+|.++++|+.+++..+ ++.++. +|.. .+|+.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            466677888888888777766544322        124466788889999999999999874 677765 4444 78999


Q ss_pred             EecCCCCCcccCc-cccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538        154 LGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL  217 (288)
Q Consensus       154 L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  217 (288)
                      +.+ .+.++.++. .|..+++|+.+.+.+|.+.               .+|+.+.+. +.++.++...|..+++|+.+.+
T Consensus       253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred             EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence            999 455777744 5888899999998877543               389999998 5689999999999999999999


Q ss_pred             ccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCC-CCcEEECcCCCCC
Q psy10538        218 DANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFE-NLVELDVSRNAPS  272 (288)
Q Consensus       218 ~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~-~L~~L~L~~N~l~  272 (288)
                      ..+ ++.++...  |.++ +|+.+.+.+|.+..++. .|.+++ +++.+.+..+.+.
T Consensus       331 p~~-l~~I~~~a--F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          331 PAN-VTQINFSA--FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CTT-CCEECTTS--SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             Ccc-ccEEcHHh--CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            655 88887753  7888 99999999999887664 466774 7889988877654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.12  E-value=1.6e-11  Score=115.12  Aligned_cols=167  Identities=18%  Similarity=0.200  Sum_probs=95.0

Q ss_pred             cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh-cCcCCcEEEcccC-CCcc--cCcccccCCCccEEecCCCC
Q psy10538         85 NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR-YFRSLEELLLDAN-HIRD--LPKNFFRLNRLRKLGLSDNE  160 (288)
Q Consensus        85 ~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~n-~i~~--lp~~~~~l~~L~~L~l~~n~  160 (288)
                      ..++.|++|+++++.+...              ....+. .+++|++|++++| .++.  ++.....+++|++|++++|.
T Consensus       102 ~~~~~L~~L~L~~~~~~~~--------------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDD--------------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHH--------------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             HhCCCCCeEEeeCcEEcHH--------------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            3577888999988876531              111222 4567777777766 4442  34444456677777777766


Q ss_pred             Cccc-----CccccCCCCCcEEEccCCC--CC-----------CCccEEEccCC-CCCCCChHHHhcCCCcceeecccC-
Q psy10538        161 IHRL-----PPEIQNFENLVELDVSRNG--CN-----------RQVEYVDKRHC-SLPNVPEDVLRYFRSLEELLLDAN-  220 (288)
Q Consensus       161 l~~l-----~~~l~~~~~L~~L~l~~n~--~~-----------~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n-  220 (288)
                      ++..     +.....+++|++|++++|.  ++           ++|++|++++| .++.+ +..+..+++|+.++++.+ 
T Consensus       168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~  246 (594)
T 2p1m_B          168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYT  246 (594)
T ss_dssp             EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCC
T ss_pred             cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEccccccc
Confidence            5422     1112245567777776664  22           46666776666 22232 223334555666654333 


Q ss_pred             ------------------------------cccccCCccccccCCCCccEEEccCCCCc--cCCccccCCCCCcEEECcC
Q psy10538        221 ------------------------------HIRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSR  268 (288)
Q Consensus       221 ------------------------------~l~~l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~~~L~~L~L~~  268 (288)
                                                    ....++..   +..+++|+.|++++|.++  .++..+..+++|+.|++++
T Consensus       247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV---YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG---HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH---HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence                                          11223332   335678888888888876  2333356778888888887


Q ss_pred             C
Q psy10538        269 N  269 (288)
Q Consensus       269 N  269 (288)
                      |
T Consensus       324 ~  324 (594)
T 2p1m_B          324 Y  324 (594)
T ss_dssp             G
T ss_pred             c
Confidence            7

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.95  E-value=6.1e-11  Score=105.37  Aligned_cols=132  Identities=18%  Similarity=0.198  Sum_probs=92.8

Q ss_pred             CcCCcEEEcccCCCccc-----Cccccc-CCCccEEecCCCCCccc-Cccc-cCCCCCcEEEccCCCCCCCccEEEccCC
Q psy10538        125 FRSLEELLLDANHIRDL-----PKNFFR-LNRLRKLGLSDNEIHRL-PPEI-QNFENLVELDVSRNGCNRQVEYVDKRHC  196 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~l-----p~~~~~-l~~L~~L~l~~n~l~~l-~~~l-~~~~~L~~L~l~~n~~~~~L~~L~l~~n  196 (288)
                      ++.++.|++++|.++..     ...+.. .++|+.|++++|.++.. ...+ ..+++|++|++++|              
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n--------------  136 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN--------------  136 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS--------------
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC--------------
Confidence            46788999999998842     222222 26889999999987632 1112 22345666666666              


Q ss_pred             CCCCCChHHH-----hcCCCcceeecccCcccc-----cCCccccccCCCCccEEEccCCCCcc-----CCccccCCCCC
Q psy10538        197 SLPNVPEDVL-----RYFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENL  261 (288)
Q Consensus       197 ~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~~~L  261 (288)
                      .++......+     ...++|+.|++++|.++.     ++..   +...++|++|++++|.|+.     ++..+...++|
T Consensus       137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG---LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL  213 (372)
T ss_dssp             CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH---HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred             CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH---HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence            7764333222     245789999999999974     4443   5678999999999999983     35567788899


Q ss_pred             cEEECcCCCCCC
Q psy10538        262 VELDVSRNAPSN  273 (288)
Q Consensus       262 ~~L~L~~N~l~~  273 (288)
                      +.|++++|.|++
T Consensus       214 ~~L~Ls~N~i~~  225 (372)
T 3un9_A          214 QELNVAYNGAGD  225 (372)
T ss_dssp             CEEECCSSCCCH
T ss_pred             CeEECCCCCCCH
Confidence            999999999984

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=2.6e-08  Score=87.97  Aligned_cols=176  Identities=14%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCC
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI  161 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l  161 (288)
                      .++..+++|+.|.+.........   ..|.. . .-....+..+|+|+.|.++++.-..++. + .+++|+.|++..+.+
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~---is~~~-~-~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l  205 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQE---ISWIE-Q-VDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGL  205 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCC---GGGCB-C-CBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBC
T ss_pred             HhhhhcchhhheeecCcchhhcc---ccccc-c-cCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCC
Confidence            34556778888887765432110   01110 0 0122456677888888888773123443 3 377888888887776


Q ss_pred             cc-cCcccc--CCCCCcEEEccCC--CCCCCccEEEccCCCCCCCChHHH-hcCCCcceeecccCcccc-cCCccccccC
Q psy10538        162 HR-LPPEIQ--NFENLVELDVSRN--GCNRQVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRD-LPKNYLDFFR  234 (288)
Q Consensus       162 ~~-l~~~l~--~~~~L~~L~l~~n--~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~-l~~~~~~~~~  234 (288)
                      .. ....+.  .+++|++|+++.+  ...+        +..+..+.+... ..+++|+.|++.+|.++. .+..+.....
T Consensus       206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~  277 (362)
T 2ra8_A          206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGF--------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI  277 (362)
T ss_dssp             CHHHHHHHHHSBCTTCCEEEEECBCGGGTC--------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred             ChHHHHHHHHccCCCCcEEEEecccccccc--------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence            52 112222  5677888876421  0000        000111111110 135667777776666652 1111100123


Q ss_pred             CCCccEEEccCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538        235 LNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       235 l~~L~~L~l~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      +++|+.|+++.|.++.     ++..+..+++|+.|++++|.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5667777777776662     2333345566777777777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.56  E-value=2.3e-08  Score=79.81  Aligned_cols=60  Identities=13%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             CCcceeecccCcccc-----cCCccccccCCCCccEEEc--cCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538        210 RSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGL--SDNEIHR-----LPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       210 ~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l--~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      ++|++|++++|.++.     +...   +...++|+.|++  ++|.|+.     +...+...+.|+.|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~---L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEA---LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHG---GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHH---HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            445555555554442     2222   444556666666  6666662     3344555666777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=8.1e-08  Score=76.62  Aligned_cols=113  Identities=17%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             HHhhcCcCCcEEEcccC-CCcc-----cCcccccCCCccEEecCCCCCcc-----cCccccCCCCCcEEEccCCCCCCCc
Q psy10538        120 DVLRYFRSLEELLLDAN-HIRD-----LPKNFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNGCNRQV  188 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n-~i~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~~~L  188 (288)
                      ..+...++|++|++++| .|..     +...+...++|++|++++|.+..     +...+...+.|++|++++|      
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N------  103 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN------  103 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS------
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC------
Confidence            34555666666666666 6652     23344445666666666666651     2333444455555555555      


Q ss_pred             cEEEccCCCCCCCC----hHHHhcCCCcceeec--ccCcccc-----cCCccccccCCCCccEEEccCCCCc
Q psy10538        189 EYVDKRHCSLPNVP----EDVLRYFRSLEELLL--DANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       189 ~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l--~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                              .++...    ...+...++|++|++  ++|.++.     +...   +...++|+.|++++|.+.
T Consensus       104 --------~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~---L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          104 --------FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM---LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             --------CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH---HHHCSSCCEEECCCSSHH
T ss_pred             --------cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH---HHhCCCcCEEeccCCCCC
Confidence                    333210    112233455666666  5566552     2222   444556666666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=1.3e-07  Score=83.44  Aligned_cols=155  Identities=20%  Similarity=0.255  Sum_probs=95.9

Q ss_pred             CCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-cCcccc--cCCCccEEec
Q psy10538         80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-LPKNFF--RLNRLRKLGL  156 (288)
Q Consensus        80 lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~~~~--~l~~L~~L~l  156 (288)
                      +++.+..++.|+.|.++++.--              .+++  + .+++|++|++..+.++. ....+.  .+++|+.|++
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l--------------~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL--------------SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC--------------BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc--------------eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence            4444567889999999886200              1122  2 27899999999988872 222333  6899999998


Q ss_pred             CCC--C------CcccCccc--cCCCCCcEEEccCCCCCCCccEEEccCCCCCCC-ChHHH--hcCCCcceeecccCccc
Q psy10538        157 SDN--E------IHRLPPEI--QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV-PEDVL--RYFRSLEELLLDANHIR  223 (288)
Q Consensus       157 ~~n--~------l~~l~~~l--~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~-~~~~~--~~~~~L~~L~l~~n~l~  223 (288)
                      +.+  .      +..+...+  ..+++|++|++.+|              .+... ...+.  ..+++|+.|+++.|.++
T Consensus       227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--------------~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--------------EEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--------------TTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--------------CCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            632  1      21222222  13456666666665              55421 11222  14678999999999987


Q ss_pred             c-----cCCccccccCCCCccEEEccCCCCcc-CCccccC-CCCCcEEECcCCC
Q psy10538        224 D-----LPKNYLDFFRLNRLRKLGLSDNEIHR-LPPEIQN-FENLVELDVSRNA  270 (288)
Q Consensus       224 ~-----l~~~~~~~~~l~~L~~L~l~~n~l~~-~p~~l~~-~~~L~~L~L~~N~  270 (288)
                      .     ++..   +..+++|+.|++++|.|+. ....+.. +  ...++++.++
T Consensus       293 d~G~~~L~~~---L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          293 DEGARLLLDH---VDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHTT---HHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hHHHHHHHhh---cccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            4     3433   4567899999999998882 2222332 2  3568888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.38  E-value=3.9e-06  Score=74.71  Aligned_cols=132  Identities=11%  Similarity=0.105  Sum_probs=85.5

Q ss_pred             CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccC
Q psy10538        148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN  220 (288)
Q Consensus       148 l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  220 (288)
                      ...++.+.+..+...--...+..+..++.+....+.+.       .+|+.+.+..+ ++.+....|..+++|+.+++..+
T Consensus       252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence            44455554444422211223444445555444333221       36777777654 77788888888899999999754


Q ss_pred             cccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538        221 HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMVYLKLGR  285 (288)
Q Consensus       221 ~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~  285 (288)
                       ++.++...  |.++.+|+.+.+..+ ++.++. .|.++.+|+.+++..+ ++.+...+..++.++
T Consensus       331 -v~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~  391 (394)
T 4fs7_A          331 -VEEIGKRS--FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFK  391 (394)
T ss_dssp             -CCEECTTT--TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEE
T ss_pred             -ccEEhHHh--ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCc
Confidence             78887653  888999999999766 776654 5889999999998754 555555666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.31  E-value=8.6e-06  Score=72.48  Aligned_cols=78  Identities=12%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcccc-c
Q psy10538        203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMV-Y  280 (288)
Q Consensus       203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~~~-~  280 (288)
                      ...+..+.+|+.+.+..+ ++.++...  |..+.+|+.+.+.. .++.++. .|.++.+|+.+++..+ ++.|+...+ .
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~a--F~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEA--FESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTT--TTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             cccccccccccccccccc-cceechhh--hcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            344556677777777654 66776653  77889999999864 4777754 5888999999999776 777765433 4


Q ss_pred             ccccc
Q psy10538        281 LKLGR  285 (288)
Q Consensus       281 l~~~~  285 (288)
                      ++.|+
T Consensus       365 C~~L~  369 (394)
T 4fs7_A          365 CINLK  369 (394)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            45554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.18  E-value=1e-05  Score=72.06  Aligned_cols=134  Identities=15%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             ceecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEE
Q psy10538        114 LKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYV  191 (288)
Q Consensus       114 l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L  191 (288)
                      +..+...+|.++..|+.+.+..+.. .+. .+|.....|+.+.+. +.++.++.. |..+.+|+.+.+..+         
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~---------  321 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG---------  321 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---------
T ss_pred             ceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---------
Confidence            3444445555555555555543322 222 244445555555553 234444332 444445555554422         


Q ss_pred             EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCC
Q psy10538        192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN  269 (288)
Q Consensus       192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N  269 (288)
                            ++.+....|..+++|+.+.+..+ ++.++...  |.++.+|+.+.+.++....  ..+..+.+|+.+.+..+
T Consensus       322 ------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a--F~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          322 ------ITQILDDAFAGCEQLERIAIPSS-VTKIPESA--FSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             ------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG--GTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             ------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH--hhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence                  44444555555566666666433 55555432  5556666666655543221  12344455555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=2.9e-06  Score=71.44  Aligned_cols=80  Identities=24%  Similarity=0.351  Sum_probs=53.1

Q ss_pred             CCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh--HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCC
Q psy10538        170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE--DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       170 ~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                      .++.|++|++++|              +++.++.  ..+..+++|+.|+|++|.++++.. +..+..+ +|+.|++++|.
T Consensus       168 ~l~~L~~L~Ls~N--------------~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNN--------------RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTS--------------CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCC--------------CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCc
Confidence            3556666666666              6665542  344567888888888888886633 1113333 88888888888


Q ss_pred             Cc-cCCc-------cccCCCCCcEEE
Q psy10538        248 IH-RLPP-------EIQNFENLVELD  265 (288)
Q Consensus       248 l~-~~p~-------~l~~~~~L~~L~  265 (288)
                      ++ .+|.       .+..+++|+.||
T Consensus       232 l~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          232 LCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CccccCcchhHHHHHHHHCcccCeEC
Confidence            87 4542       256788888887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=1.4e-06  Score=73.42  Aligned_cols=59  Identities=27%  Similarity=0.300  Sum_probs=38.5

Q ss_pred             hcCcCCcEEEcccCCCcccC---cccccCCCccEEecCCCCCcccCccccCCC--CCcEEEccCC
Q psy10538        123 RYFRSLEELLLDANHIRDLP---KNFFRLNRLRKLGLSDNEIHRLPPEIQNFE--NLVELDVSRN  182 (288)
Q Consensus       123 ~~l~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n  182 (288)
                      .++++|+.|++++|+|+.++   ..+..+++|+.|++++|.++.+. .+..+.  +|++|++++|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N  230 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN  230 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC
Confidence            45778888888888877543   44556778888888888777552 233332  5566666655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=0.0001  Score=65.48  Aligned_cols=78  Identities=15%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEE
Q psy10538        187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELD  265 (288)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~  265 (288)
                      .|+.+.+. +.++.++...|..+.+|+.+++..+ ++.+....  |.++.+|+.+.+.. .++.+.. .|.++.+|+.++
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a--F~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA--FAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH--hhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEE
Confidence            44444443 3445555556666666666666543 55555432  56666666666643 3555543 466666677776


Q ss_pred             CcCC
Q psy10538        266 VSRN  269 (288)
Q Consensus       266 L~~N  269 (288)
                      +.++
T Consensus       364 ~~~~  367 (394)
T 4gt6_A          364 YSGS  367 (394)
T ss_dssp             ESSC
T ss_pred             ECCc
Confidence            6655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.03  E-value=0.00037  Score=61.35  Aligned_cols=64  Identities=17%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECc
Q psy10538        201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVS  267 (288)
Q Consensus       201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~  267 (288)
                      ++...|..+++|+.+.+..+.++.++...  |.++.+|+.+.+..+ ++.+.. .|.++.+|+.+.+.
T Consensus       277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          277 VPYLLCSGCSNLTKVVMDNSAIETLEPRV--FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTT--TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccccccccccccccceehhhh--hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            33334444455555555444444444432  444555555555322 443332 34444555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.94  E-value=6.4e-05  Score=66.27  Aligned_cols=137  Identities=13%  Similarity=0.251  Sum_probs=90.2

Q ss_pred             cchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCC-------CCC--
Q psy10538        117 YSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRN-------GCN--  185 (288)
Q Consensus       117 ~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n-------~~~--  185 (288)
                      +....+.....++.+.+..+ ++.++ ..+.....|+.+.+..+ ++.+.. .+..+..|+.+.+..+       .+.  
T Consensus       208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c  285 (379)
T 4h09_A          208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGC  285 (379)
T ss_dssp             ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTC
T ss_pred             Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccc
Confidence            33445556666776666543 34333 35556677777777655 555533 3556667777766543       111  


Q ss_pred             CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCC
Q psy10538        186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFE  259 (288)
Q Consensus       186 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~  259 (288)
                      .+|+.+.+.++.++.++...|..+.+|+.+.+..+ ++.++...  |.++.+|+.+.+..+ ++.+.. .|.++.
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA--FKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH--hhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            37888888888899898888998999999999754 77887653  788899998887543 555543 355443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.58  E-value=0.00018  Score=57.54  Aligned_cols=66  Identities=18%  Similarity=0.175  Sum_probs=42.6

Q ss_pred             HHhhcCcCCcEEEcccC-CCc-----ccCcccccCCCccEEecCCCCCc-----ccCccccCCCCCcEEEccCCCCC
Q psy10538        120 DVLRYFRSLEELLLDAN-HIR-----DLPKNFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNGCN  185 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n-~i~-----~lp~~~~~l~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~  185 (288)
                      ..+..-+.|++|++++| .|.     .+.+.+..-+.|+.|++++|.+.     .+...+...+.|++|++++|.|.
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            33555677888888875 665     23445555677888888888776     23344555567777777777443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.57  E-value=2.5e-05  Score=61.37  Aligned_cols=82  Identities=13%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             CCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcC----CCcceeecccCc-c
Q psy10538        149 NRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYF----RSLEELLLDANH-I  222 (288)
Q Consensus       149 ~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~L~~L~l~~n~-l  222 (288)
                      ..|+.||+++|.++.. -..+..+++|++|++++|.             .++...-..+..+    ++|++|++++|. +
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~-------------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH-------------YIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT-------------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC-------------ccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            4567777777765522 1234555556666655552             2332111112221    246666666653 5


Q ss_pred             cc--cCCccccccCCCCccEEEccCCC
Q psy10538        223 RD--LPKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       223 ~~--l~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                      ++  +..    +..+++|+.|++++|.
T Consensus       128 TD~Gl~~----L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          128 TDKGIIA----LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CHHHHHH----GGGCTTCCEEEEESCT
T ss_pred             CHHHHHH----HhcCCCCCEEECCCCC
Confidence            52  221    4455666666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.55  E-value=7.5e-05  Score=59.70  Aligned_cols=109  Identities=11%  Similarity=0.189  Sum_probs=72.9

Q ss_pred             cCCCccEEecCCC-CCc-----ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC----CChHHHhcCCCcceee
Q psy10538        147 RLNRLRKLGLSDN-EIH-----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN----VPEDVLRYFRSLEELL  216 (288)
Q Consensus       147 ~l~~L~~L~l~~n-~l~-----~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~  216 (288)
                      .-+.|+.|++++| .+.     .+...+...+.|+.|++++|              .+..    .-...+..-+.|++|+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n--------------~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--------------AISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--------------CCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC--------------CCChHHHHHHHHHHhcCCccCeEe
Confidence            3567888888875 665     23444555566777777777              5552    2223444567899999


Q ss_pred             cccCccc-----ccCCccccccCCCCccEEEccCC---CCc-----cCCccccCCCCCcEEECcCCCCC
Q psy10538        217 LDANHIR-----DLPKNYLDFFRLNRLRKLGLSDN---EIH-----RLPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       217 l~~n~l~-----~l~~~~~~~~~l~~L~~L~l~~n---~l~-----~~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      +++|.|+     .+...   +..-+.|+.|++++|   .+.     .+...+...+.|+.|+++.|.+.
T Consensus       105 L~~N~Ig~~Ga~ala~a---L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          105 VESNFLTPELLARLLRS---TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             CCSSBCCHHHHHHHHHH---TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             cCCCcCCHHHHHHHHHH---HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            9999887     23333   566678999999865   445     34455677788999999877543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.34  E-value=0.00013  Score=57.17  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CCCCCChHHHhcCCCcceeecccCc-ccccCCccccccCC----CCccEEEccCCC-CccC-CccccCCCCCcEEECcCC
Q psy10538        197 SLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRL----NRLRKLGLSDNE-IHRL-PPEIQNFENLVELDVSRN  269 (288)
Q Consensus       197 ~l~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l----~~L~~L~l~~n~-l~~~-p~~l~~~~~L~~L~L~~N  269 (288)
                      .++...-..+..+++|+.|++++|. +++-.-..  +..+    ++|+.|++++|. |++- -..+..+++|+.|+++++
T Consensus        72 ~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A           72 CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            4443222233456666666666663 54211000  2222    356666666664 6521 123455666666666666


Q ss_pred             C
Q psy10538        270 A  270 (288)
Q Consensus       270 ~  270 (288)
                      .
T Consensus       150 ~  150 (176)
T 3e4g_A          150 P  150 (176)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00097  Score=49.55  Aligned_cols=55  Identities=27%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             EEEccCCCCC--CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        190 YVDKRHCSLP--NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       190 ~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      .++.++++++  .+|..+   .++++.|+|++|.|+.+|...  +..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGL--LDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTT--GGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhh--hhhccccCEEEecCCCee
Confidence            4455555777  777543   346788888888888887764  667778888888888765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.10  E-value=0.00075  Score=50.16  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=41.8

Q ss_pred             cEEecCCCCCc--ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc
Q psy10538        152 RKLGLSDNEIH--RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       152 ~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  223 (288)
                      ..++.+++.++  .+|..+.  .++++|++++|              +++.++.+.+..+++|+.|++++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N--------------~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN--------------NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS--------------CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCC--------------cCCccChhhhhhccccCEEEecCCCee
Confidence            47788888887  7876532  34555555555              888888888888889999999988775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 39/177 (22%)

Query: 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
              +L+EL L+ N ++D+      L  L  L L++N+I  L P +     L EL +  N 
Sbjct: 217 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 274

Query: 184 ------------------------------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLE 213
                                           + + Y+     ++ ++    +     L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 214 ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
            L    N + D+         L  +  L    N+I  L P + N   + +L ++  A
Sbjct: 333 RLFFANNKVSDVS----SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
           +     L+ L    N + D+  +   L  +  L    N+I  L P + N   + +L ++ 
Sbjct: 325 VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382

Query: 182 N 182
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
            E +     K  +           +  L  D   I+ +      LN L ++  S+N++  
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD 80

Query: 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200
           + P ++N   LV++ ++ N         +  + +   
Sbjct: 81  ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 120 DVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
              +  ++L  L+L  N I  + P  F  L +L +L LS N++  LP ++          
Sbjct: 49  GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL------ 102

Query: 179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
                     + +      +  V + V      +  + L  N ++        F  + +L
Sbjct: 103 ----------QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY 280
             + ++D  I  +P  +    +L EL +  N  + VD++ + 
Sbjct: 153 SYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLK 192

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
            C   +  V      L  VP+D+         L L  N I ++     DF  L  L  L 
Sbjct: 7   RCQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDG--DFKNLKNLHTLI 61

Query: 243 LSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMVY 280
           L +N+I ++ P        L  L +S+N    +   M  
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 16/174 (9%)

Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ 169
             +K++    + L     +E               F  + +L  + ++D  I  +P  + 
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 169

Query: 170 NFENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
              +L EL +  N          + +  + K   S  ++         +   L     + 
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-------IQNFENLVELDVSRN 269
             L K          ++ + L +N I  +               +   + +  N
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 18/132 (13%)

Query: 131 LLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEY 190
           L L    +  L  +  +L  +  L LS N +  LPP +     L  L  S N        
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 191 VDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250
            +                    +ELLL  N ++             RL  L L  N + +
Sbjct: 62  ANLPRL----------------QELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQ 104

Query: 251 LPPEIQNFENLV 262
                +    ++
Sbjct: 105 EEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 22/120 (18%)

Query: 152 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS 211
           R L L+  ++  L   ++    +  LD+S N        +    C               
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRC--------------- 44

Query: 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRN 269
               L       +  +N      L RL++L L +N + +      + +   LV L++  N
Sbjct: 45  ----LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 24/154 (15%)

Query: 66  FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF 125
            +              PE+ +   + +   +             + +      + +    
Sbjct: 224 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 283

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
            SLEEL +  N + +LP       RL +L  S N +  +P   Q   NL +L V  N   
Sbjct: 284 PSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQ---NLKQLHVEYN--- 334

Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
                        P++PE       S+E+L +++
Sbjct: 335 --------PLREFPDIPE-------SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
              ++        +  N    +     SLEEL +  N + +LP          RL +L  
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------PPRLERLIA 311

Query: 244 SDNEIHRLPPEIQNFENLVELDVSRN 269
           S N +  +P   Q   NL +L V  N
Sbjct: 312 SFNHLAEVPELPQ---NLKQLHVEYN 334

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 36/191 (18%)

Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQ-------------- 169
            +    L L  N +            RL +L L   E+ +L  +                
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 170 ------------------NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS 211
                             +F  L  L +       +++ +  +   L  +P  +L     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAP 271
           LE+L L  N++ +LP        L  L  L L +N ++ +P        L    +  N P
Sbjct: 150 LEKLSLANNNLTELPAG--LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN-P 206

Query: 272 SNVDSSMVYLK 282
              +  ++Y +
Sbjct: 207 WLCNCEILYFR 217

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN------EIHRLPPEIQNFEN 173
            +L    +L+ LLL  N +  +PK FF  + L    L  N      EI      +Q+   
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225

Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPN 200
            V +             V    C   +
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
            E + +   K  +          S+++++ + + I+ +      L  + KL L+ N++  
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT- 81

Query: 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
              +I+   NL  L       N+  +    +                 +  L+       
Sbjct: 82  ---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 224 DLPKNY---------------------------LDFFRLNRLRKLGLSDNEIHRLPPEIQ 256
               N                            +    L +L+ L LS N I  L   + 
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LA 197

Query: 257 NFENLVELDVS 267
             +NL  L++ 
Sbjct: 198 GLKNLDVLELF 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 6/109 (5%)

Query: 133 LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVD 192
           L A  I    + +    R R+L L   +I  +       +    +D S N   +      
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL----- 56

Query: 193 KRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
                L  +   ++   R           + DL +  L    L  L  L
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 105

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
            +L +    +    R R+L L   +I  +       +    +D S N    +D
Sbjct: 5   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 124 YFRSLEELLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 182
             ++L  L L  N I   LP+   +L  L  L +S N +    P+  N +       + N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

Query: 183 GC 184
            C
Sbjct: 302 KC 303

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
           L     L  L  D N I D+      L  L ++ L +N+I  + P + N  NL  + ++
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
              +        L     L  L  D N I D+         L  L ++ L +N+I  + P
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDIS----PLASLPNLIEVHLKNNQISDVSP 212

Query: 254 EIQNFENLVELDVS 267
            + N  NL  + ++
Sbjct: 213 -LANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELDVS 180
           +SL+   +     + +       + ++++ LS N I       L   I + ++L   + S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 181 RNGCNRQVEYVDKRHCSLPNVP 202
                R  + + +    L    
Sbjct: 68  DIFTGRVKDEIPEALRLLLQAL 89

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 25/184 (13%)

Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH- 162
            E +     K  +           +  L  D   I+ +      LN L ++  S+N++  
Sbjct: 18  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD 76

Query: 163 ----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
               +   ++ +                          +      D L+   +L  L L 
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 136

Query: 219 ANHIRDLPKNY------------------LDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260
           +N I D+                           L  L +L +S N++  +   +    N
Sbjct: 137 SNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTN 195

Query: 261 LVEL 264
           L  L
Sbjct: 196 LESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-24  Score=180.15  Aligned_cols=191  Identities=27%  Similarity=0.273  Sum_probs=166.7

Q ss_pred             CCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538         46 NASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF  125 (288)
Q Consensus        46 ~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l  125 (288)
                      +...+.+++|+++.++.                 +|+.+.  +++++|+|++|+++              .+++..|.++
T Consensus         8 ~~~~~~~v~C~~~~L~~-----------------iP~~lp--~~l~~L~Ls~N~i~--------------~l~~~~f~~l   54 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-----------------LPPDLP--KDTTILHLSENLLY--------------TFSLATLMPY   54 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-----------------CCSCCC--TTCCEEECTTSCCS--------------EEEGGGGTTC
T ss_pred             ccCCCeEEEccCCCCCe-----------------eCcCcC--cCCCEEECcCCcCC--------------CcCHHHhhcc
Confidence            34555667777777754                 777664  57899999998877              5667779999


Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEccC
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRH  195 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~  195 (288)
                      ++|++|++++|+|+.+|. +..+++|++|++++|+++..+..+..+++|+.+++++|.+.          .++++|++++
T Consensus        55 ~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~  133 (266)
T d1p9ag_          55 TRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (266)
T ss_dssp             TTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccc
Confidence            999999999999998864 56799999999999999988888889999999999999765          3789999999


Q ss_pred             CCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC
Q psy10538        196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       196 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~  272 (288)
                      |.++.+++..+..+++++.+++++|+++.++...  ++.+++|++|++++|+|+.+|..+..+++|+.|+|++|++.
T Consensus       134 n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccceeccccccccccchhcccccccccccCccc--cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            9999999998888999999999999999888753  78899999999999999999999989999999999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=4.9e-22  Score=170.95  Aligned_cols=192  Identities=20%  Similarity=0.208  Sum_probs=152.4

Q ss_pred             CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEe
Q psy10538         77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLG  155 (288)
Q Consensus        77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~  155 (288)
                      .+.+|+.++.+++|++|++++|++.              .+.+..+..++.|+++++++|.+. .+|..+..++.++.++
T Consensus        90 ~g~iP~~i~~L~~L~~L~Ls~N~l~--------------~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          90 VGPIPPAIAKLTQLHYLYITHTNVS--------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             ESCCCGGGGGCTTCSEEEEEEECCE--------------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccchhhhcccccc--------------ccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            3467777888888888888777665              555666778888888888888876 6678888888888899


Q ss_pred             cCCCCCc-ccCccccCCCCC-cEEEccCCCCCC---------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc
Q psy10538        156 LSDNEIH-RLPPEIQNFENL-VELDVSRNGCNR---------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD  224 (288)
Q Consensus       156 l~~n~l~-~l~~~l~~~~~L-~~L~l~~n~~~~---------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  224 (288)
                      +++|.+. .+|..+..+..+ +.+++++|++++         ....+++..+......+..+..+++++.+++++|.++.
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9888887 678777777664 788888887652         45678888887776666666678899999999999886


Q ss_pred             cCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccC
Q psy10538        225 LPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRK  286 (288)
Q Consensus       225 l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~  286 (288)
                      .++.   ++.+++++.|++++|+++ .+|..++++++|++|+|++|+++ .||+ .++++.++.
T Consensus       236 ~~~~---~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~  295 (313)
T d1ogqa_         236 DLGK---VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV  295 (313)
T ss_dssp             BGGG---CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCG
T ss_pred             cccc---cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCH
Confidence            5555   788899999999999999 89999999999999999999998 7875 456665543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=1.1e-20  Score=161.64  Aligned_cols=105  Identities=16%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CCCCCcEEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538        170 NFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG  242 (288)
Q Consensus       170 ~~~~L~~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~  242 (288)
                      .+++|+.+++++|.+.       .++++|++++|..+..++..+..++.++.|++++|.+++++...  +.++++|++|+
T Consensus       148 ~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~--~~~l~~L~~L~  225 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELH  225 (305)
T ss_dssp             GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEE
T ss_pred             cccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc--ccccccceeee
Confidence            3444555555555432       24555555555555444444444555555555555555444321  44455555555


Q ss_pred             ccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538        243 LSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       243 l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      +++|+|+.+|.++..+++|+.|++++|+|++|+.
T Consensus       226 L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             CCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             cccccccccccccccccCCCEEECCCCccCccCh
Confidence            5555555555555555555555555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-21  Score=162.64  Aligned_cols=181  Identities=24%  Similarity=0.297  Sum_probs=156.1

Q ss_pred             CCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccC
Q psy10538         87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLP  165 (288)
Q Consensus        87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~  165 (288)
                      ...+.+.+.++++++.+|+              +.   .+++++|++++|+|+.+|. .|..+++|++|++++|.++.+|
T Consensus         9 ~~~~~~v~C~~~~L~~iP~--------------~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~   71 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPP--------------DL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ   71 (266)
T ss_dssp             STTCCEEECTTSCCSSCCS--------------CC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred             cCCCeEEEccCCCCCeeCc--------------Cc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc
Confidence            4455666888887775432              11   1479999999999998875 6888999999999999999886


Q ss_pred             ccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCC
Q psy10538        166 PEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN  236 (288)
Q Consensus       166 ~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~  236 (288)
                      . ++.+++|++|++++|+++         .+|++|++++|.+.+++...+..+.+++.+++++|.++.+|...  +..++
T Consensus        72 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~--~~~l~  148 (266)
T d1p9ag_          72 V-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTP  148 (266)
T ss_dssp             C-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TTTCT
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccc--ccccc
Confidence            4 467899999999999876         48999999999999998888888999999999999999998764  67889


Q ss_pred             CccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        237 RLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       237 ~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      +++.+++++|+++.++. .+..+++|++|+|++|+|+.||+++..++.++.+
T Consensus       149 ~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             cchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEE
Confidence            99999999999998775 4788999999999999999999999988887754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=4.1e-20  Score=162.33  Aligned_cols=270  Identities=17%  Similarity=0.235  Sum_probs=170.6

Q ss_pred             hhhhhhhccccccccccCc----cccccccCCCCcccccccccccCCccccEEeeCCCccccccCcc-----ceEEecCC
Q psy10538          5 SKFFNKELSSHLFRGKISE----DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNS   75 (288)
Q Consensus         5 ~~~~~~~ls~~~~~g~~p~----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~   75 (288)
                      .+.....+...++.+.++.    ++..+.+....+++   .+.++.+++|+.++++++.++.++...     +.+.+.++
T Consensus        22 ~~~~~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~---l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n   98 (384)
T d2omza2          22 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN   98 (384)
T ss_dssp             HHHHHHHTTCSSTTSEECHHHHTTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHHHhCCCCCCCccCHHHhCCCCEEECCCCCCCC---ccccccCCCCCEEeCcCCcCCCCccccCCccccccccccc
Confidence            3444556666777776553    23334444333332   346778899999999999887765332     34788888


Q ss_pred             CCCCCCccccCCCCccEEEcCCCCccchhhHHHhh---------------------------------------------
Q psy10538         76 TKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEW---------------------------------------------  110 (288)
Q Consensus        76 ~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~---------------------------------------------  110 (288)
                      .+..+++ ++.+++|+.++++++.+..++......                                             
T Consensus        99 ~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (384)
T d2omza2          99 QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL  177 (384)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTC
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence            8888775 888999999999888876543221100                                             


Q ss_pred             ----cCCceecchHHhhcCcCCcEEEcccCCCcccCc---------------------ccccCCCccEEecCCCCCcccC
Q psy10538        111 ----TSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK---------------------NFFRLNRLRKLGLSDNEIHRLP  165 (288)
Q Consensus       111 ----~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~---------------------~~~~l~~L~~L~l~~n~l~~l~  165 (288)
                          ...........+..+++++.+++++|.++.+++                     .+..+++++.+++++|.++.++
T Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~  257 (384)
T d2omza2         178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA  257 (384)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC
Confidence                000000001223344445555555554444322                     2334444555555555444433


Q ss_pred             ccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCC
Q psy10538        166 PEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR  237 (288)
Q Consensus       166 ~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~  237 (288)
                      + +..+++|+++++++++++        ..++.+++..|.++.++.  +..+++++.+++++|+++.+++    +..+++
T Consensus       258 ~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~----l~~l~~  330 (384)
T d2omza2         258 P-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLTK  330 (384)
T ss_dssp             G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCTT
T ss_pred             c-ccccccCCEeeccCcccCCCCccccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc----cccCCC
Confidence            2 344445555555555443        244555555555554432  4557889999999999998875    788999


Q ss_pred             ccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        238 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       238 L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      |+.|++++|+++.++ .++++++|++|++++|+++++++ +..++.++.+
T Consensus       331 L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L  378 (384)
T d2omza2         331 LQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQL  378 (384)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEE
T ss_pred             CCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEe
Confidence            999999999999877 58899999999999999999876 7777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=3.2e-20  Score=158.76  Aligned_cols=236  Identities=14%  Similarity=0.174  Sum_probs=176.5

Q ss_pred             ccccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCcc
Q psy10538         23 EDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQ  101 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~  101 (288)
                      .++..+.++...++..++ ..+.+++.|+.++++.+.+                 ..++ ..+..++.|+.+++++|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~l~~n~~-----------------~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKI-----------------SKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCC-----------------CCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCcCCCcCh-hHhhccccccccccccccc-----------------cccchhhhhCCCccCEecccCCccC
Confidence            333333433333333332 2344555555555555554                 4453 35778888999999999888


Q ss_pred             chhhHHH-------hhcCCceecchHHhhcCcCCcEEEcccCCCc---ccCcccccCCCccEEecCCCCCcccCccccCC
Q psy10538        102 QYEEVVA-------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR---DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF  171 (288)
Q Consensus       102 ~l~~~~~-------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~---~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~  171 (288)
                      .++....       ...+.+..+.+..+........++...+...   ..+..+..+++|+.+++++|.+..+|..+  .
T Consensus        93 ~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~  170 (305)
T d1xkua_          93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--P  170 (305)
T ss_dssp             BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--C
T ss_pred             cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--C
Confidence            7764422       2345667777888888888888998888755   23456777889999999999988887653  5


Q ss_pred             CCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEE
Q psy10538        172 ENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL  241 (288)
Q Consensus       172 ~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L  241 (288)
                      +++++|++++|.+.          ..+++|++++|.++.+++..+..+++|++|++++|+++++|.+   +..+++|++|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~---l~~l~~L~~L  247 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG---LADHKYIQVV  247 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT---TTTCSSCCEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccc---cccccCCCEE
Confidence            78999999988755          3788999999999999888888899999999999999999987   8999999999


Q ss_pred             EccCCCCccCCcc-------ccCCCCCcEEECcCCCCC--CcCcccccc
Q psy10538        242 GLSDNEIHRLPPE-------IQNFENLVELDVSRNAPS--NVDSSMVYL  281 (288)
Q Consensus       242 ~l~~n~l~~~p~~-------l~~~~~L~~L~L~~N~l~--~ip~~~~~l  281 (288)
                      ++++|+|+.++..       ....++|+.+++++|+++  ++++....+
T Consensus       248 ~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             ECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence            9999999987642       345678999999999987  566655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-20  Score=158.42  Aligned_cols=190  Identities=25%  Similarity=0.394  Sum_probs=110.7

Q ss_pred             CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEec
Q psy10538         78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGL  156 (288)
Q Consensus        78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l  156 (288)
                      +++|..+.  +.+++|++++|+++              .+++..|.++++|++|++++|++..++. .+..+..++.+..
T Consensus        24 ~~iP~~ip--~~~~~L~Ls~N~i~--------------~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~   87 (284)
T d1ozna_          24 QAVPVGIP--AASQRIFLHGNRIS--------------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (284)
T ss_dssp             SSCCTTCC--TTCSEEECTTSCCC--------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccCCCCC--CCCCEEECcCCcCC--------------CCCHHHhhcccccccccccccccccccccccccccccccccc
Confidence            44555443  44677777776665              4455556666666677776666665433 3444555555554


Q ss_pred             C-CCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc
Q psy10538        157 S-DNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD  224 (288)
Q Consensus       157 ~-~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  224 (288)
                      . .+.++.+ +..+..+++|+++++++|.+.          .+|+.+++++|.++.+++..+..+++|+.|++++|.++.
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence            3 3445444 333555666666666666543          256666666666666666656556666666666666666


Q ss_pred             cCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCc-ccccccccc
Q psy10538        225 LPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDS-SMVYLKLGR  285 (288)
Q Consensus       225 l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~-~~~~l~~~~  285 (288)
                      ++...  +.++++|+.+++++|+++.+ |..|.++++|++|++++|++..+|. .+..++.++
T Consensus       168 l~~~~--f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         168 VPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             ECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             cchhh--hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            55442  55666666666666666633 4456666666666666666665543 333444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=153.60  Aligned_cols=179  Identities=25%  Similarity=0.331  Sum_probs=133.8

Q ss_pred             CCCCc-cccCCCCccEEEcCCCCccchhhHHH-----------hhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-c
Q psy10538         78 PRGPP-EINEDAAYSERVLHESRLQQYEEVVA-----------EWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-N  144 (288)
Q Consensus        78 ~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~-----------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~  144 (288)
                      +.+|+ .+..+++|+++++++|++..++....           ...+.+..+++..|.++++|++|++++|.+..++. .
T Consensus        45 ~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~  124 (284)
T d1ozna_          45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL  124 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccc
Confidence            34664 57889999999999999886543322           22345556666677777777777777777765543 4


Q ss_pred             cccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc
Q psy10538        145 FFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       145 ~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  223 (288)
                      +....+|+.+++++|.++.+|+ .+..+++|++|++++|              +++.+++..+..+++|+.+++++|+++
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N--------------~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--------------RISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cchhcccchhhhccccccccChhHhccccchhhcccccC--------------cccccchhhhccccccchhhhhhcccc
Confidence            4556677777777777776654 3555666666666666              888888888888999999999999999


Q ss_pred             ccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCC
Q psy10538        224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPS  272 (288)
Q Consensus       224 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~  272 (288)
                      .+++..  +..+++|++|++++|+++.++. .+..+++|+++++++|++.
T Consensus       191 ~i~~~~--f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHA--FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTT--TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhH--hhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            775432  8889999999999999997764 5888999999999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.80  E-value=1.4e-19  Score=155.32  Aligned_cols=191  Identities=17%  Similarity=0.163  Sum_probs=161.2

Q ss_pred             CCCccccCCCCccEEEcCC-CCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCccEEec
Q psy10538         79 RGPPEINEDAAYSERVLHE-SRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGL  156 (288)
Q Consensus        79 ~lp~~l~~l~~l~~l~l~~-n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l  156 (288)
                      .+|+.++.+++|++|++++ |++.              +..|..+.++++|++|++++|++..+ +..+..+..|+.+++
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~--------------g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l  132 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLV--------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEE--------------SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             CCChHHhcCccccccccccccccc--------------cccccccccccccchhhhccccccccccccccchhhhccccc
Confidence            4899999999999999986 5554              22345588999999999999999965 556888999999999


Q ss_pred             CCCCCc-ccCccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-
Q psy10538        157 SDNEIH-RLPPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-  223 (288)
Q Consensus       157 ~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-  223 (288)
                      ++|.+. .+|..+..++.++++++++|.+.           ..++.+++++|+++...+..+..+. ...++++.+... 
T Consensus       133 ~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~  211 (313)
T d1ogqa_         133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             ccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            999877 67888999999999999999765           2358999999999876666666544 457899888877 


Q ss_pred             ccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538        224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD  287 (288)
Q Consensus       224 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~  287 (288)
                      .+|..   ++.+++++.+++++|.+...++.+..+++|+.|++++|+++ .+|++++.++.++.+
T Consensus       212 ~~~~~---~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L  273 (313)
T d1ogqa_         212 DASVL---FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             CCGGG---CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ccccc---ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEE
Confidence            45555   78899999999999999866667889999999999999999 899999999988865

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=3.3e-18  Score=149.93  Aligned_cols=178  Identities=19%  Similarity=0.352  Sum_probs=147.5

Q ss_pred             ccccCCCCccEEEcCCCCccchhhHHH--------hhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccE
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVVA--------EWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRK  153 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~--------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~  153 (288)
                      .....++.+..+++++|.+..++....        ...+.+..+  ..+..+++++.+++++|.++.+++ +..+++|+.
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~  267 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE  267 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             cccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc-ccccccCCE
Confidence            445667778888888888877654311        223344443  347889999999999999998764 677899999


Q ss_pred             EecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc
Q psy10538        154 LGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL  225 (288)
Q Consensus       154 L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  225 (288)
                      ++++++.++.+++ +..+..++.+.++.|.+.        .+++.|++++|+++.+++  +..+++|+.|++++|+++.+
T Consensus       268 L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         268 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             eeccCcccCCCCc-cccccccccccccccccccccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC
Confidence            9999999987764 667888999999999876        489999999999998865  56689999999999999998


Q ss_pred             CCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCC
Q psy10538        226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA  270 (288)
Q Consensus       226 ~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~  270 (288)
                      +.    ++.+++|++|++++|+++.+++ +.++++|+.|++++|.
T Consensus       345 ~~----l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         345 SS----LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GG----GGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCEE
T ss_pred             hh----HcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCCc
Confidence            74    7889999999999999998875 8999999999999883

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=7.9e-19  Score=141.03  Aligned_cols=162  Identities=22%  Similarity=0.379  Sum_probs=131.4

Q ss_pred             CCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC
Q psy10538         86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP  165 (288)
Q Consensus        86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~  165 (288)
                      .+..+++|+++++.+++++                .+..+++|++|++++|+++.+++ +..+++|++|++++|.+..++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~----------------~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~  100 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID----------------GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT  100 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             HhcCCCEEECCCCCCCCcc----------------ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc
Confidence            4667888899888877431                24567899999999999988765 788899999999999888776


Q ss_pred             ccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccC
Q psy10538        166 PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD  245 (288)
Q Consensus       166 ~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~  245 (288)
                      . +..++.|+.++++++              ....+++  +..+++|+.+++++|.+..++.    +..+++++.|++.+
T Consensus       101 ~-l~~l~~L~~L~l~~~--------------~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----l~~~~~L~~L~l~~  159 (199)
T d2omxa2         101 P-LANLTNLTGLTLFNN--------------QITDIDP--LKNLTNLNRLELSSNTISDISA----LSGLTSLQQLNFSS  159 (199)
T ss_dssp             G-GTTCTTCSEEECCSS--------------CCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCS
T ss_pred             c-ccccccccccccccc--------------ccccccc--cchhhhhHHhhhhhhhhccccc----cccccccccccccc
Confidence            4 677888888888877              5555433  5568999999999999988774    78899999999999


Q ss_pred             CCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538        246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD  287 (288)
Q Consensus       246 n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~  287 (288)
                      |+++.++ .++++++|+.|++++|+++++| .+..++.++.|
T Consensus       160 n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         160 NQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             SCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccccCCc-cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            9999886 4889999999999999999986 47777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=3e-18  Score=140.31  Aligned_cols=166  Identities=20%  Similarity=0.336  Sum_probs=99.0

Q ss_pred             CCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCC
Q psy10538         80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN  159 (288)
Q Consensus        80 lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n  159 (288)
                      ++ .+..+++|+.+++++|++..+              .  .+..+++++++++++|.++.++ .+..+++|+.+.++++
T Consensus        56 l~-~l~~l~~L~~L~ls~n~i~~~--------------~--~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          56 IE-GVQYLNNLIGLELKDNQITDL--------------A--PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             CT-TGGGCTTCCEEECCSSCCCCC--------------G--GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             ch-hHhcCCCCcEeecCCceeecc--------------c--cccccccccccccccccccccc-cccccccccccccccc
Confidence            53 366666666666666655532              1  1455666666666666666554 3455666666666666


Q ss_pred             CCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCcc
Q psy10538        160 EIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR  239 (288)
Q Consensus       160 ~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~  239 (288)
                      ....++. +...+.++.+.++++              .+....+  +..+++|+.+++++|.++..+.    ++++++|+
T Consensus       118 ~~~~~~~-~~~~~~~~~l~~~~~--------------~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~----l~~l~~L~  176 (227)
T d1h6ua2         118 QITDVTP-LAGLSNLQVLYLDLN--------------QITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLT  176 (227)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSS--------------CCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred             cccccch-hccccchhhhhchhh--------------hhchhhh--hccccccccccccccccccchh----hcccccce
Confidence            5544322 334445555555555              5554432  3345667777777777665554    56677777


Q ss_pred             EEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccC
Q psy10538        240 KLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRK  286 (288)
Q Consensus       240 ~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~  286 (288)
                      .|++++|+++.++. +.++++|++|++++|+++++|+ +..++.++.
T Consensus       177 ~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~  221 (227)
T d1h6ua2         177 TLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFI  221 (227)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred             ecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCE
Confidence            77777777776653 6667777777777777777663 555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.9e-18  Score=138.86  Aligned_cols=140  Identities=27%  Similarity=0.470  Sum_probs=71.8

Q ss_pred             hhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV  201 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~  201 (288)
                      +..+++|++|++++|+|+.+++ +..+++|+.|++++|+++.+| .+..+++|+.+++++|              .+..+
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~--------------~~~~~  127 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN--------------GISDI  127 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS--------------CCCCC
T ss_pred             HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccccccccc--------------ccccc
Confidence            3445566666666666665542 445666666666666666554 2455555666666555              33333


Q ss_pred             ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccc
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYL  281 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l  281 (288)
                      +.  +..++.++.+++++|.++..+.    +..+++|+.+++++|+++.+++ ++++++|+.|++++|+++++| .+..+
T Consensus       128 ~~--l~~l~~l~~l~~~~n~l~~~~~----~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l  199 (210)
T d1h6ta2         128 NG--LVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGL  199 (210)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred             cc--cccccccccccccccccccccc----cccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-hhcCC
Confidence            21  2334455555555555544332    3444555555555555554432 445555555555555555554 24444


Q ss_pred             cccc
Q psy10538        282 KLGR  285 (288)
Q Consensus       282 ~~~~  285 (288)
                      +.++
T Consensus       200 ~~L~  203 (210)
T d1h6ta2         200 KNLD  203 (210)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            4443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=6.5e-18  Score=138.28  Aligned_cols=169  Identities=20%  Similarity=0.294  Sum_probs=132.8

Q ss_pred             cccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHh
Q psy10538         43 WSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVL  122 (288)
Q Consensus        43 ~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~  122 (288)
                      .+.++++|+.++++.+.+                 ..+++ +..++.++.+++++|.+++++                .+
T Consensus        58 ~l~~l~~L~~L~ls~n~i-----------------~~~~~-l~~l~~l~~l~~~~n~~~~i~----------------~l  103 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQI-----------------TDLAP-LKNLTKITELELSGNPLKNVS----------------AI  103 (227)
T ss_dssp             TGGGCTTCCEEECCSSCC-----------------CCCGG-GTTCCSCCEEECCSCCCSCCG----------------GG
T ss_pred             hHhcCCCCcEeecCCcee-----------------ecccc-ccccccccccccccccccccc----------------cc
Confidence            345555555555555555                 33544 788999999999998877432                26


Q ss_pred             hcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCC
Q psy10538        123 RYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP  202 (288)
Q Consensus       123 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~  202 (288)
                      .++++|+.++++++....++. +...+.++.+.++.+.+...+ .+..+++|+++++++|              .+...+
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n--------------~~~~~~  167 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA--------------QVSDLT  167 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS--------------CCCCCG
T ss_pred             cccccccccccccccccccch-hccccchhhhhchhhhhchhh-hhcccccccccccccc--------------ccccch
Confidence            678999999999998876643 556789999999999887553 3566778888888888              666554


Q ss_pred             hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcC
Q psy10538        203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR  268 (288)
Q Consensus       203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~  268 (288)
                      +  +..+++|+.|++++|++++++.    ++.+++|++|++++|+++.+++ ++++++|+.|++++
T Consensus       168 ~--l~~l~~L~~L~Ls~n~l~~l~~----l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 P--LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             h--hcccccceecccCCCccCCChh----hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            4  5668999999999999999875    7889999999999999999874 88999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-17  Score=138.07  Aligned_cols=193  Identities=20%  Similarity=0.272  Sum_probs=146.6

Q ss_pred             CCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-cCc-ccccCCCccE
Q psy10538         76 TKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-LPK-NFFRLNRLRK  153 (288)
Q Consensus        76 ~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~-~~~~l~~L~~  153 (288)
                      .++.+|+.+.  ++++++++++|+++              .+++.+|.++++|++|++++|.+.. ++. .|..++.++.
T Consensus        19 ~l~~iP~~l~--~~l~~L~Ls~n~i~--------------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1          19 KVTEIPSDLP--RNAIELRFVLTKLR--------------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             SCSSCCSCSC--SCCSEEEEESCCCC--------------EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred             CCCCcCCCCC--CCCCEEECcCCcCC--------------ccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence            3455777654  57899999998776              5666778899999999999998874 443 6777889999


Q ss_pred             EecCC-CCCcccC-ccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCC-Ccceeeccc
Q psy10538        154 LGLSD-NEIHRLP-PEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFR-SLEELLLDA  219 (288)
Q Consensus       154 L~l~~-n~l~~l~-~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~  219 (288)
                      +.+.. |.+..++ ..+..+++|+++++++|++.           ..+..+...++.+..++...+..++ .++.+++.+
T Consensus        83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            88764 5666554 45788899999999999765           2455566677788877776665554 788899999


Q ss_pred             CcccccCCccccccCCCCccEE-EccCCCCccCCcc-ccCCCCCcEEECcCCCCCCcCcc-ccccccccCC
Q psy10538        220 NHIRDLPKNYLDFFRLNRLRKL-GLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS-MVYLKLGRKD  287 (288)
Q Consensus       220 n~l~~l~~~~~~~~~l~~L~~L-~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~~  287 (288)
                      |+++.++..   .....++..+ .+++|+++++|.. |.++++|+.|++++|+++++|.. +..++.++.+
T Consensus       163 n~l~~i~~~---~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         163 NGIQEIHNC---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             SCCCEECTT---TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccccccc---cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            999988876   4555665555 5688889988864 78899999999999999988774 5566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.3e-17  Score=134.90  Aligned_cols=166  Identities=24%  Similarity=0.378  Sum_probs=137.0

Q ss_pred             CCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538         46 NASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF  125 (288)
Q Consensus        46 ~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l  125 (288)
                      .+..|+.++++.+.++.                 ++ .+..+++|++|++++|+++.+              +  .+..+
T Consensus        44 ~L~~L~~L~l~~~~i~~-----------------l~-~l~~l~~L~~L~L~~n~i~~l--------------~--~~~~l   89 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVTKLFLNGNKLTDI--------------K--PLANL   89 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCC--------------G--GGTTC
T ss_pred             HhcCccEEECcCCCCCC-----------------ch-hHhhCCCCCEEeCCCccccCc--------------c--ccccC
Confidence            45667777777777644                 43 377899999999999988743              2  25678


Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV  205 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~  205 (288)
                      ++|++|++++|+++.+| .+..+++|+.|++++|.+..++ .+..++.++++++++|              .++..+.  
T Consensus        90 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n--------------~l~~~~~--  151 (210)
T d1h6ta2          90 KNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--------------KITDITV--  151 (210)
T ss_dssp             TTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS--------------CCCCCGG--
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccc-cccccccccccccccc--------------ccccccc--
Confidence            99999999999999987 4788999999999999988765 4777888999999888              6665443  


Q ss_pred             HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcC
Q psy10538        206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR  268 (288)
Q Consensus       206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~  268 (288)
                      ...+++|+.+++++|.++.+++    ++.+++|+.|++++|+|+++| .+.++++|+.|++++
T Consensus       152 ~~~l~~L~~l~l~~n~l~~i~~----l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         152 LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccc----ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            4558899999999999998875    788999999999999999987 589999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.1e-17  Score=128.78  Aligned_cols=163  Identities=21%  Similarity=0.378  Sum_probs=133.9

Q ss_pred             cCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538         45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY  124 (288)
Q Consensus        45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~  124 (288)
                      ..+..++.++++.+.++.                 ++ .+..+++|++|++++|+++.+              ++  +.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~-----------------l~-~l~~l~nL~~L~Ls~N~l~~~--------------~~--l~~   82 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-----------------ID-GVEYLNNLTQINFSNNQLTDI--------------TP--LKN   82 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCC--------------GG--GTT
T ss_pred             HHhcCCCEEECCCCCCCC-----------------cc-ccccCCCcCcCccccccccCc--------------cc--ccC
Confidence            346677888888877755                 32 367789999999999988743              22  678


Q ss_pred             CcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538        125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED  204 (288)
Q Consensus       125 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~  204 (288)
                      +++|++|++++|.+..++. +..++.|+.+++++|....++ .+..+++|+.+++++|              ++..++. 
T Consensus        83 l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n--------------~l~~~~~-  145 (199)
T d2omxa2          83 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN--------------TISDISA-  145 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS--------------CCCCCGG-
T ss_pred             Ccccccccccccccccccc-ccccccccccccccccccccc-ccchhhhhHHhhhhhh--------------hhccccc-
Confidence            9999999999999998864 788999999999999887654 3667788888888888              7776653 


Q ss_pred             HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEE
Q psy10538        205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL  264 (288)
Q Consensus       205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L  264 (288)
                       +..+++++.+++.+|+++.+++    ++++++|+.|++++|++++++ .++.+++|+.|
T Consensus       146 -l~~~~~L~~L~l~~n~l~~l~~----l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         146 -LSGLTSLQQLNFSSNQVTDLKP----LANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             -ccccccccccccccccccCCcc----ccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence             5568999999999999999875    789999999999999999886 57888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=6e-18  Score=135.04  Aligned_cols=163  Identities=18%  Similarity=0.247  Sum_probs=122.5

Q ss_pred             CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEec
Q psy10538         78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGL  156 (288)
Q Consensus        78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l  156 (288)
                      +++|+.+.  +.+++|+|++|+|..             .+.+..|..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~i~~-------------~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNELGR-------------ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCS-------------BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CccCCCCC--CCCCEEEeCCCCCcc-------------cccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            45777663  678999999998863             244566888999999999999998664 57778999999999


Q ss_pred             CCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC
Q psy10538        157 SDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL  235 (288)
Q Consensus       157 ~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l  235 (288)
                      ++|+++.+|+. |..+++|++|++++|              +++.++++.|..+++|+++++++|.+...+..   ..-.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N--------------~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~---~~~~  148 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDN--------------QISCVMPGSFEHLNSLTSLNLASNPFNCNCHL---AWFA  148 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSS--------------CCCEECTTSSTTCTTCCEEECTTCCBCCSGGG---HHHH
T ss_pred             ccccccccCHHHHhCCCcccccccCCc--------------cccccCHHHhcCCcccccccccccccccccch---HHHh
Confidence            99999988654 778888888888888              88888888888889999999999988754432   1112


Q ss_pred             CCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCCCcC
Q psy10538        236 NRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       236 ~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                      ..++.+.+..+.++ ..|.   .+..++.++++.|.+..-+
T Consensus       149 ~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         149 EWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             HHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCC
T ss_pred             hhhhhhcccCCCeEeCCCh---hhcCCEeeecCHhhCcCCC
Confidence            33555566666666 5554   3455677788888887433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=1.2e-15  Score=131.48  Aligned_cols=261  Identities=19%  Similarity=0.210  Sum_probs=166.1

Q ss_pred             hhhhhccccccccccCcc---ccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCC
Q psy10538          7 FFNKELSSHLFRGKISED---TINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRG   80 (288)
Q Consensus         7 ~~~~~ls~~~~~g~~p~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~l   80 (288)
                      .-..||+.++++. +|+.   +..+.++...++.++     ....+|+.+++..+.++.++.   ..+.+++.++.+..+
T Consensus        40 l~~LdLs~~~L~~-lp~~~~~L~~L~Ls~N~l~~lp-----~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~l  113 (353)
T d1jl5a_          40 AHELELNNLGLSS-LPELPPHLESLVASCNSLTELP-----ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL  113 (353)
T ss_dssp             CSEEECTTSCCSC-CCSCCTTCSEEECCSSCCSSCC-----CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSC
T ss_pred             CCEEEeCCCCCCC-CCCCCCCCCEEECCCCCCcccc-----cchhhhhhhhhhhcccchhhhhccccccccccccccccc
Confidence            3456888888764 5644   444455555555444     234567777777777665443   346788899999999


Q ss_pred             CccccCCCCccEEEcCCCCccchhhHHHhh----cCCceecchHHhhcCcCCcEEEcccCCCcccCc-------------
Q psy10538         81 PPEINEDAAYSERVLHESRLQQYEEVVAEW----TSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-------------  143 (288)
Q Consensus        81 p~~l~~l~~l~~l~l~~n~l~~l~~~~~~~----~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-------------  143 (288)
                      |. ++.++.|+.++++++.+...+......    ...........+..++.++.+++++|.+..++.             
T Consensus       114 p~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~  192 (353)
T d1jl5a_         114 PE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN  192 (353)
T ss_dssp             CC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred             cc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccc
Confidence            86 678999999999999887654432111    111111222335667788888888877654332             


Q ss_pred             ------ccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCC---CCh-----
Q psy10538        144 ------NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPN---VPE-----  203 (288)
Q Consensus       144 ------~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~---~~~-----  203 (288)
                            .+..++.++.+++++|....++..   ..++..+.+..+.+.      ..+...++..+.+..   ++.     
T Consensus       193 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~  269 (353)
T d1jl5a_         193 ILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL  269 (353)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccchhccc
Confidence                  123355666777766665544432   223444444444332      133344443333221   111     


Q ss_pred             --------HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538        204 --------DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD  275 (288)
Q Consensus       204 --------~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip  275 (288)
                              .....+++|++|++++|+++.+|..      +++|+.|++++|+|+++|..   +++|++|++++|+++++|
T Consensus       270 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~------~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             ECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC
T ss_pred             ccccCccccccccCCCCCEEECCCCccCccccc------cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCC
Confidence                    1112357899999999999999864      57899999999999999853   568999999999999998


Q ss_pred             ccccccccccC
Q psy10538        276 SSMVYLKLGRK  286 (288)
Q Consensus       276 ~~~~~l~~~~~  286 (288)
                      .....+..+|-
T Consensus       341 ~~~~~L~~L~~  351 (353)
T d1jl5a_         341 DIPESVEDLRM  351 (353)
T ss_dssp             CCCTTCCEEEC
T ss_pred             ccccccCeeEC
Confidence            87767766654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.7e-17  Score=126.77  Aligned_cols=128  Identities=23%  Similarity=0.215  Sum_probs=104.4

Q ss_pred             hhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538        122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV  201 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~  201 (288)
                      |.+..++++|++++|+|+.++..+..+++|+.|++++|.++.++ .+..+++|++|++++|              +++.+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N--------------~i~~l   78 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN--------------RICRI   78 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS--------------CCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc--------------cccCC
Confidence            45667889999999999988876677889999999999998884 4677777888887777              78888


Q ss_pred             ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEE
Q psy10538        202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELD  265 (288)
Q Consensus       202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~  265 (288)
                      ++..+..+++|+.|++++|.+++++.- ..+..+++|+++++++|.++..|.    .+..+++|+.||
T Consensus        79 ~~~~~~~l~~L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          79 GEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCHHHHCTTCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             Cccccccccccccceeccccccccccc-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            877777789999999999999877641 127788999999999999987774    367889999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=129.03  Aligned_cols=189  Identities=17%  Similarity=0.254  Sum_probs=132.9

Q ss_pred             EEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEccc-CCCccc-Ccccc
Q psy10538         70 FHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDA-NHIRDL-PKNFF  146 (288)
Q Consensus        70 l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~-n~i~~l-p~~~~  146 (288)
                      +++.++.++.+|+ .+..+++|+++++++|.+..             .+++..|..++.++++.+.. |.+..+ +..+.
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~-------------~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~  100 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-------------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  100 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC-------------EECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhccccccc-------------eeecccccccccccccccccccccccccccccc
Confidence            3334444444665 46789999999999987653             34556677888888887764 556644 44677


Q ss_pred             cCCCccEEecCCCCCcccCc--cccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCcc
Q psy10538        147 RLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLE  213 (288)
Q Consensus       147 ~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~  213 (288)
                      .+++|+.+++++|.+...+.  .+..+..+..+...++.+.           ..++.+++++|+++.++...+. .+++.
T Consensus       101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~  179 (242)
T d1xwdc1         101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLD  179 (242)
T ss_dssp             CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEE
T ss_pred             ccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhh
Confidence            78888888888888775543  2333445555555544332           3678889999999998887776 45555


Q ss_pred             ee-ecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCcCc
Q psy10538        214 EL-LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       214 ~L-~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      ++ ++.+|.++.+|...  +.++++|++|++++|+|+.+|.. +.++++|+.+++  +.++.+|+
T Consensus       180 ~~~~l~~n~l~~l~~~~--f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~--~~l~~lp~  240 (242)
T d1xwdc1         180 ELNLSDNNNLEELPNDV--FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT  240 (242)
T ss_dssp             EEECTTCTTCCCCCTTT--TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE--ESSSCSCC
T ss_pred             ccccccccccccccHHH--hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC--CCCCcCCC
Confidence            55 56888999998763  78899999999999999999864 566666666554  34566664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=5.4e-16  Score=123.47  Aligned_cols=140  Identities=23%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             cCCcEEEcccCCCcc-cC-cccccCCCccEEecCCCCCcccC-ccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCC
Q psy10538        126 RSLEELLLDANHIRD-LP-KNFFRLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP  202 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~-lp-~~~~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~  202 (288)
                      +++++|++++|+|+. ++ ..|..+++|+.|++++|.+..++ ..+..++.|++|++++|              +++.++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N--------------~l~~l~   94 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN--------------KIKEIS   94 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC--------------CCCEEC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc--------------cccccC
Confidence            466777777777763 32 35566777777777777777553 34556666666666666              677777


Q ss_pred             hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccc
Q psy10538        203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYL  281 (288)
Q Consensus       203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l  281 (288)
                      ++.|..+++|++|++++|+|+.+|+..  +..+++|+++++++|.+...+....-...++.+.+..+.+. ..|..+..+
T Consensus        95 ~~~F~~l~~L~~L~L~~N~l~~i~~~~--f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~  172 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDV  172 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSCCCEECTTS--STTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTS
T ss_pred             HHHHhCCCcccccccCCccccccCHHH--hcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCC
Confidence            777777777778888777777776653  66777777777777777633321111112444455555555 455544433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.9e-16  Score=114.03  Aligned_cols=118  Identities=25%  Similarity=0.308  Sum_probs=77.0

Q ss_pred             cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhc
Q psy10538        129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY  208 (288)
Q Consensus       129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~  208 (288)
                      |+|++++|+|+.++. +..+++|++|++++|.++.+|+.++.+++|++|++++|              .++.++.  +..
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N--------------~i~~l~~--~~~   63 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN--------------ALENVDG--VAN   63 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS--------------CCCCCGG--GTT
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc--------------cccccCc--ccc
Confidence            467777777777653 66777777777777777777776777777777777777              5555543  445


Q ss_pred             CCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc---c-ccCCCCCcEE
Q psy10538        209 FRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP---E-IQNFENLVEL  264 (288)
Q Consensus       209 ~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~---~-l~~~~~L~~L  264 (288)
                      +++|+++++++|++++++.. ..++.+++|+.+++++|+++..+.   . ...+|+|+.+
T Consensus        64 l~~L~~L~l~~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          64 LPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccCeEECCCCccCCCCCc-hhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            67777777777777766531 115666777777777777664332   1 2345555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=118.35  Aligned_cols=126  Identities=21%  Similarity=0.248  Sum_probs=105.1

Q ss_pred             ccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc
Q psy10538        144 NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       144 ~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  223 (288)
                      .+....+++.|++++|.++.++..+..+++|+.|++++|              .++.++.  +..+++|++|++++|.++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N--------------~i~~l~~--~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN--------------EIRKLDG--FPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS--------------CCCEECC--CCCCSSCCEEECCSSCCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC--------------CCCccCC--cccCcchhhhhccccccc
Confidence            356677899999999999999876677888999999988              6665532  556899999999999999


Q ss_pred             ccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCcCc----cccccccccCC
Q psy10538        224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNVDS----SMVYLKLGRKD  287 (288)
Q Consensus       224 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~ip~----~~~~l~~~~~~  287 (288)
                      .+++..  +..+++|+.|++++|+|+.++.  .+..+++|+.+++++|++++.|.    .+..++.++.+
T Consensus        77 ~l~~~~--~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          77 RIGEGL--DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             EECSCH--HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             CCCccc--cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence            998763  4679999999999999998764  57899999999999999998875    46677777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.6e-15  Score=109.51  Aligned_cols=105  Identities=25%  Similarity=0.363  Sum_probs=91.7

Q ss_pred             cEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcccc
Q psy10538        152 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD  231 (288)
Q Consensus       152 ~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~  231 (288)
                      +.|++++|.++.++. +..++.|++|++++|              +++.+|+. +..+++|+.|++++|.++++|.    
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N--------------~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~----   60 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN--------------RLRALPPA-LAALRCLEVLQASDNALENVDG----   60 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSS--------------CCCCCCGG-GGGCTTCCEEECCSSCCCCCGG----
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCC--------------ccCcchhh-hhhhhcccccccccccccccCc----
Confidence            578999999998874 788888999988888              88888876 4569999999999999999985    


Q ss_pred             ccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCcCc
Q psy10538        232 FFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNVDS  276 (288)
Q Consensus       232 ~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~ip~  276 (288)
                      ++.+++|+.+++++|+|+.+|.  .++.+++|+.+++++|+++.++.
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            8899999999999999997764  58899999999999999975543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.57  E-value=2.2e-13  Score=117.01  Aligned_cols=211  Identities=20%  Similarity=0.177  Sum_probs=117.9

Q ss_pred             cccEEeeCCCccccccCc---cceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538         49 SIREYLCHKTYLAAEEAF---NEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF  125 (288)
Q Consensus        49 ~L~~l~~~~~~l~~l~~~---~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l  125 (288)
                      .++.++++.+.++.++..   ...++..++.++++|..   ..+|+.|++++|+++.+++.                  .
T Consensus        39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l------------------p   97 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL------------------P   97 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC------------------C
T ss_pred             CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh------------------c
Confidence            344555555555443211   12344444444556643   23566667777666543211                  1


Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCc-------------------cccCCCCCcEEEccCCCCC-
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-------------------EIQNFENLVELDVSRNGCN-  185 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~-------------------~l~~~~~L~~L~l~~n~~~-  185 (288)
                      +.|++|++++|.++.+|. ++.+++|+.|+++++.+...+.                   .+..++.++.+.+++|.+. 
T Consensus        98 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccc
Confidence            357777777777777764 4567777777777765542221                   1333455666666666432 


Q ss_pred             ---------------------------CCccEEEccCCCCCCCChHHH----------------hcCCCcceeecccCcc
Q psy10538        186 ---------------------------RQVEYVDKRHCSLPNVPEDVL----------------RYFRSLEELLLDANHI  222 (288)
Q Consensus       186 ---------------------------~~L~~L~l~~n~l~~~~~~~~----------------~~~~~L~~L~l~~n~l  222 (288)
                                                 ..++.+++++|....++....                .....+...++..+.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                       256777777776554432110                0011222233322222


Q ss_pred             cc---cCCccc-----------cccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccc
Q psy10538        223 RD---LPKNYL-----------DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG  284 (288)
Q Consensus       223 ~~---l~~~~~-----------~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~  284 (288)
                      ..   ++....           ....+++|++|++++|+++++|.   .+++|+.|++++|+|+++|..+.+|+.+
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l~~~~~~L~~L  329 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPELPQNLKQL  329 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCCccccccCCCCEE
Confidence            21   111000           01235789999999999999985   3678999999999999999876655543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=4.6e-16  Score=124.51  Aligned_cols=133  Identities=23%  Similarity=0.293  Sum_probs=95.1

Q ss_pred             HHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCC
Q psy10538        120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP  199 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~  199 (288)
                      ..+..+++|++|++++|+|+.++ .+..+++|+.|++++|.++.+|.....++.|++|++++|              .++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N--------------~i~  106 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN--------------QIA  106 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE--------------ECC
T ss_pred             hHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc--------------ccc
Confidence            45677788888888888888775 467788888888888888777654444456677777766              677


Q ss_pred             CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-----------ccCCCCCcEEECcC
Q psy10538        200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-----------IQNFENLVELDVSR  268 (288)
Q Consensus       200 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-----------l~~~~~L~~L~L~~  268 (288)
                      .+++  +..+++|+.|++++|+++.++.. ..+..+++|+.|++++|+++..+..           +..+|+|+.||  +
T Consensus       107 ~l~~--~~~l~~L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~  181 (198)
T d1m9la_         107 SLSG--IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             CHHH--HHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--S
T ss_pred             cccc--ccccccccccccccchhcccccc-ccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--C
Confidence            6643  44578899999999998877531 0177889999999999987632221           46688898887  4


Q ss_pred             CCCC
Q psy10538        269 NAPS  272 (288)
Q Consensus       269 N~l~  272 (288)
                      ..++
T Consensus       182 ~~I~  185 (198)
T d1m9la_         182 MPVD  185 (198)
T ss_dssp             GGGT
T ss_pred             ccCC
Confidence            4444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=1.3e-15  Score=121.76  Aligned_cols=59  Identities=29%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             hcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCC
Q psy10538        123 RYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN  182 (288)
Q Consensus       123 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n  182 (288)
                      ..+++|++|++++|.|+.+|.....++.|+.|++++|.++.++ .+..+++|++|++++|
T Consensus        67 ~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          67 SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred             cCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            3444555555555555544433333344555555555544442 2333444444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.6e-13  Score=110.71  Aligned_cols=170  Identities=20%  Similarity=0.215  Sum_probs=113.6

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEecCCC-CC
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDN-EI  161 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n-~l  161 (288)
                      ......+++++++++.+..             ......+..+++|++|+++++.++ ..+..+..+++|++|++++| .+
T Consensus        42 ~~~~~~L~~LdLs~~~i~~-------------~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~i  108 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEV-------------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  108 (284)
T ss_dssp             CCCCBCCCEEECTTCEECH-------------HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             hccCCCCCEEECCCCccCH-------------HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccc
Confidence            3345578888998876552             111234667788888888888877 44556677888888888886 35


Q ss_pred             cc--cCccccCCCCCcEEEccCC-CCC------------CCccEEEccCCC--CCCC-ChHHHhcCCCcceeecccCc-c
Q psy10538        162 HR--LPPEIQNFENLVELDVSRN-GCN------------RQVEYVDKRHCS--LPNV-PEDVLRYFRSLEELLLDANH-I  222 (288)
Q Consensus       162 ~~--l~~~l~~~~~L~~L~l~~n-~~~------------~~L~~L~l~~n~--l~~~-~~~~~~~~~~L~~L~l~~n~-l  222 (288)
                      +.  +..-...+++|++|+++++ .++            ..|+.|+++++.  ++.. .......+++|++|++++|. +
T Consensus       109 td~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         109 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             cccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC
Confidence            42  2222345678888888875 332            478888888763  3321 12234557888999998764 5


Q ss_pred             c-ccCCccccccCCCCccEEEccCC-CCc-cCCccccCCCCCcEEECcCC
Q psy10538        223 R-DLPKNYLDFFRLNRLRKLGLSDN-EIH-RLPPEIQNFENLVELDVSRN  269 (288)
Q Consensus       223 ~-~l~~~~~~~~~l~~L~~L~l~~n-~l~-~~p~~l~~~~~L~~L~L~~N  269 (288)
                      + .....   +..+++|++|++++| .++ .-...++.+++|+.|+++++
T Consensus       189 td~~~~~---l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         189 KNDCFQE---FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGG---GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             Cchhhhh---hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5 23333   677888999999885 466 33445777888999988877

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.5e-12  Score=97.57  Aligned_cols=107  Identities=20%  Similarity=0.254  Sum_probs=84.7

Q ss_pred             cCCcEEEcccCCCcccCcccccCCCccEEecCCC-CCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538        126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN-EIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE  203 (288)
Q Consensus       126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n-~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~  203 (288)
                      ...+.++.+++.+.++|..+..+++++.|++.+| .++.++. +|..+++|+.|++++|              +++.+++
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N--------------~l~~i~~   73 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--------------GLRFVAP   73 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS--------------CCCEECT
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc--------------ccCCccc
Confidence            3456678888888888888888888888888766 4887764 4777888888888877              7888888


Q ss_pred             HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538        204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH  249 (288)
Q Consensus       204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~  249 (288)
                      ..|..+++|+.|++++|+++.+|..   .....+|+.|++++|.+.
T Consensus        74 ~~f~~l~~L~~L~Ls~N~l~~l~~~---~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          74 DAFHFTPRLSRLNLSFNALESLSWK---TVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCST---TTCSCCCCEEECCSSCCC
T ss_pred             ccccccccccceeccCCCCcccChh---hhccccccccccCCCccc
Confidence            8888888899999999998888887   444557888888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.8e-12  Score=95.25  Aligned_cols=87  Identities=24%  Similarity=0.343  Sum_probs=55.8

Q ss_pred             hhcCcCCcEEEcccC-CCcccCc-ccccCCCccEEecCCCCCcccC-ccccCCCCCcEEEccCCCCCCCccEEEccCCCC
Q psy10538        122 LRYFRSLEELLLDAN-HIRDLPK-NFFRLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSL  198 (288)
Q Consensus       122 ~~~l~~L~~L~l~~n-~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l  198 (288)
                      +..++++++|++++| .|+.++. +|..+++|+.|++++|+++.++ ..|..+++|++|++++|              ++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N--------------~l   92 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN--------------AL   92 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS--------------CC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC--------------CC
Confidence            445566777777655 3666643 5666777777777777777664 33666666666666666              66


Q ss_pred             CCCChHHHhcCCCcceeecccCccc
Q psy10538        199 PNVPEDVLRYFRSLEELLLDANHIR  223 (288)
Q Consensus       199 ~~~~~~~~~~~~~L~~L~l~~n~l~  223 (288)
                      +.++.+.+.. .+|+.|++++|.+.
T Consensus        93 ~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          93 ESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             cccChhhhcc-ccccccccCCCccc
Confidence            6666666653 35777777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.2e-12  Score=108.52  Aligned_cols=200  Identities=14%  Similarity=0.075  Sum_probs=133.0

Q ss_pred             cCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538         45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY  124 (288)
Q Consensus        45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~  124 (288)
                      .....|+.++++.+.++.               ..++..+..+++|+++++.++.+..              .....+..
T Consensus        43 ~~~~~L~~LdLs~~~i~~---------------~~l~~l~~~c~~L~~L~L~~~~l~~--------------~~~~~l~~   93 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEV---------------STLHGILSQCSKLQNLSLEGLRLSD--------------PIVNTLAK   93 (284)
T ss_dssp             CCCBCCCEEECTTCEECH---------------HHHHHHHTTBCCCSEEECTTCBCCH--------------HHHHHHTT
T ss_pred             ccCCCCCEEECCCCccCH---------------HHHHHHHHhCCCcccccccccCCCc--------------HHHHHHhc
Confidence            345678888888777654               1123346678899999999987652              22344667


Q ss_pred             CcCCcEEEcccC-CCcc--cCcccccCCCccEEecCCCC-Cc--ccCccccC-CCCCcEEEccCC--CCC----------
Q psy10538        125 FRSLEELLLDAN-HIRD--LPKNFFRLNRLRKLGLSDNE-IH--RLPPEIQN-FENLVELDVSRN--GCN----------  185 (288)
Q Consensus       125 l~~L~~L~l~~n-~i~~--lp~~~~~l~~L~~L~l~~n~-l~--~l~~~l~~-~~~L~~L~l~~n--~~~----------  185 (288)
                      +++|++|+++++ .++.  +..-...+++|+.|++++|. ++  .+...+.. .+.|+.|+++++  .++          
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            889999999995 5762  33334568899999999874 44  23333333 468999999875  233          


Q ss_pred             -CCccEEEccCCC-CCCCChHHHhcCCCcceeecccC-ccccc-CCccccccCCCCccEEEccCCCCc--cCCccccCCC
Q psy10538        186 -RQVEYVDKRHCS-LPNVPEDVLRYFRSLEELLLDAN-HIRDL-PKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNFE  259 (288)
Q Consensus       186 -~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n-~l~~l-~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~~  259 (288)
                       ++|++|++++|. ++......+..+++|++|++++| .+++- ...   ++.+++|+.|+++++ ++  .++.....++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~---L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp  249 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGI-VPDGTLQLLKEALP  249 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTS-SCTTCHHHHHHHST
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH---HhcCCCCCEEeeeCC-CCHHHHHHHHHhCc
Confidence             589999999875 66433344556899999999985 56632 222   778899999999988 44  2222234566


Q ss_pred             CCcEEECcCCCCCCc-Cccccc
Q psy10538        260 NLVELDVSRNAPSNV-DSSMVY  280 (288)
Q Consensus       260 ~L~~L~L~~N~l~~i-p~~~~~  280 (288)
                      +|+   +..++++.+ ++.++.
T Consensus       250 ~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         250 HLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             TSE---ESCCCSCCTTCSSCSS
T ss_pred             ccc---ccCccCCCCCCCccCc
Confidence            655   466777643 444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=114.60  Aligned_cols=70  Identities=21%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHh-hcCcCCcEEEcccCCCcc-----cCcccccCCCccEEe
Q psy10538         82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVL-RYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLG  155 (288)
Q Consensus        82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~  155 (288)
                      ..+..+++|++|++++|.++......         + .+.+ ...++|++|++++|.++.     ++..+...++|+.|+
T Consensus        49 ~~L~~~~~L~~LdLs~N~i~~~~~~~---------l-~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~  118 (460)
T d1z7xw1          49 SALRVNPALAELNLRSNELGDVGVHC---------V-LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH  118 (460)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHHH---------H-HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCChHHHHH---------H-HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccc
Confidence            34667888999999998876321110         0 0111 123579999999999873     345667788999999


Q ss_pred             cCCCCC
Q psy10538        156 LSDNEI  161 (288)
Q Consensus       156 l~~n~l  161 (288)
                      +++|.+
T Consensus       119 L~~N~i  124 (460)
T d1z7xw1         119 LSDNLL  124 (460)
T ss_dssp             CCSSBC
T ss_pred             cccccc
Confidence            998876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=4.1e-12  Score=109.51  Aligned_cols=184  Identities=19%  Similarity=0.216  Sum_probs=121.6

Q ss_pred             ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcc---------cccCC
Q psy10538         84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKN---------FFRLN  149 (288)
Q Consensus        84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~---------~~~l~  149 (288)
                      +..++.|+++++++|.++.-         .+..+ ...+...++|++|++++|.++.     +...         ....+
T Consensus        89 l~~~~~L~~L~L~~n~i~~~---------~~~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~  158 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPT---------AQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP  158 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTT---------THHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhhCCCcccccccccccccc---------cccch-hhhhcccccchheecccccccccccccccccccccccccccccCc
Confidence            45567788888888877631         11111 2335567788888888887752     1111         12356


Q ss_pred             CccEEecCCCCCc-----ccCccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCC----hHH
Q psy10538        150 RLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVP----EDV  205 (288)
Q Consensus       150 ~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~----~~~  205 (288)
                      .++.+.+++|.++     .+...+...+.++++++++|++.               ++|++|++++|.++...    ...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            7888888888776     23334556778888888888765               37888888888876321    123


Q ss_pred             HhcCCCcceeecccCcccc-----cCCcccccc--CCCCccEEEccCCCCcc-----CCcccc-CCCCCcEEECcCCCCC
Q psy10538        206 LRYFRSLEELLLDANHIRD-----LPKNYLDFF--RLNRLRKLGLSDNEIHR-----LPPEIQ-NFENLVELDVSRNAPS  272 (288)
Q Consensus       206 ~~~~~~L~~L~l~~n~l~~-----l~~~~~~~~--~l~~L~~L~l~~n~l~~-----~p~~l~-~~~~L~~L~L~~N~l~  272 (288)
                      +..+++|++|++++|.++.     +-..   +.  ....|+.|++++|+|+.     +...+. +.++|++|++++|+++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~---l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDA---FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHH---HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHH---hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4567889999999998873     2221   22  23578999999999872     344443 5788999999999987


Q ss_pred             CcCccccc
Q psy10538        273 NVDSSMVY  280 (288)
Q Consensus       273 ~ip~~~~~  280 (288)
                      .-...+..
T Consensus       316 ~~~~~~~~  323 (344)
T d2ca6a1         316 EEDDVVDE  323 (344)
T ss_dssp             TTSHHHHH
T ss_pred             CcchHHHH
Confidence            65554443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=1.7e-11  Score=105.58  Aligned_cols=150  Identities=21%  Similarity=0.193  Sum_probs=111.7

Q ss_pred             HHhhcCcCCcEEEcccCCCcc-----cCcccccCCCccEEecCCCCCcc-----cCcc---------ccCCCCCcEEEcc
Q psy10538        120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLSDNEIHR-----LPPE---------IQNFENLVELDVS  180 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~---------l~~~~~L~~L~l~  180 (288)
                      +.+...++|++|++++|.++.     +...+...++|+.|++++|.+..     +...         ....+.++.+.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            345667899999999999873     34455567899999999998751     1111         1346789999999


Q ss_pred             CCCCC--------------CCccEEEccCCCCCCC-----ChHHHhcCCCcceeecccCcccc-----cCCccccccCCC
Q psy10538        181 RNGCN--------------RQVEYVDKRHCSLPNV-----PEDVLRYFRSLEELLLDANHIRD-----LPKNYLDFFRLN  236 (288)
Q Consensus       181 ~n~~~--------------~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~-----l~~~~~~~~~l~  236 (288)
                      +|.++              +.+++|++++|.++.-     ....+..+++|+.|++++|.++.     +...   +..++
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~---l~~~~  243 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA---LKSWP  243 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH---GGGCT
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc---ccccc
Confidence            99876              4899999999998732     12234557889999999999873     3333   67789


Q ss_pred             CccEEEccCCCCcc-----CCccccC--CCCCcEEECcCCCCC
Q psy10538        237 RLRKLGLSDNEIHR-----LPPEIQN--FENLVELDVSRNAPS  272 (288)
Q Consensus       237 ~L~~L~l~~n~l~~-----~p~~l~~--~~~L~~L~L~~N~l~  272 (288)
                      +|+.|++++|.|+.     +...+..  .+.|+.|++++|.|+
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            99999999999983     3333443  467999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.4e-09  Score=93.25  Aligned_cols=147  Identities=20%  Similarity=0.109  Sum_probs=76.4

Q ss_pred             hcCcCCcEEEcccCCCccc-----CcccccCCCccEEecCCCCCcc-----cCccc-cCCCCCcEEEccCCCCC------
Q psy10538        123 RYFRSLEELLLDANHIRDL-----PKNFFRLNRLRKLGLSDNEIHR-----LPPEI-QNFENLVELDVSRNGCN------  185 (288)
Q Consensus       123 ~~l~~L~~L~l~~n~i~~l-----p~~~~~l~~L~~L~l~~n~l~~-----l~~~l-~~~~~L~~L~l~~n~~~------  185 (288)
                      .....++.+++++|.+...     ...+...+.++.+++++|.+..     +...+ .....|+.++++++.++      
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            3455666677776666521     2233445666667777666641     11111 12345666666666554      


Q ss_pred             --------CCccEEEccCCCCCC-----CChHHHhcCCCcceeecccCcccc-----cCCccccccCCCCccEEEccCCC
Q psy10538        186 --------RQVEYVDKRHCSLPN-----VPEDVLRYFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNE  247 (288)
Q Consensus       186 --------~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~  247 (288)
                              .+|++|+|++|.++.     +........+.|++|++++|.++.     +...   +..+++|++|++++|+
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT---LLANHSLRELDLSNNC  408 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH---HHHCCCCCEEECCSSS
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH---HhcCCCCCEEECCCCc
Confidence                    256666666666542     111111233456666666666652     2222   4445666666666666


Q ss_pred             Ccc-----CCcccc-CCCCCcEEECcCCCCC
Q psy10538        248 IHR-----LPPEIQ-NFENLVELDVSRNAPS  272 (288)
Q Consensus       248 l~~-----~p~~l~-~~~~L~~L~L~~N~l~  272 (288)
                      |+.     +...+. ....|+.+++.+|.+.
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            652     112222 2225666666666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.3e-08  Score=77.60  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh--HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccC
Q psy10538        168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE--DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD  245 (288)
Q Consensus       168 l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~  245 (288)
                      ...++.|++|++++|              +++.+++  ..+..+++|+.|++++|.+++++...  ......|+.+++++
T Consensus        61 ~~~~~~L~~L~Ls~N--------------~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~--~l~~~~L~~L~L~~  124 (162)
T d1koha1          61 EENIPELLSLNLSNN--------------RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD--KIKGLKLEELWLDG  124 (162)
T ss_dssp             HHHCTTCCCCCCCSS--------------CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH--HHTTCCCSSCCCTT
T ss_pred             HHhCCCCCEeeCCCc--------------cccCCchhHHHHhhCCcccccccccCccccchhhh--hhhccccceeecCC
Confidence            344666777777776              6766543  44566888999999999988877621  33445688889999


Q ss_pred             CCCccCCc--------cccCCCCCcEEE
Q psy10538        246 NEIHRLPP--------EIQNFENLVELD  265 (288)
Q Consensus       246 n~l~~~p~--------~l~~~~~L~~L~  265 (288)
                      |+++....        .+..+|+|+.||
T Consensus       125 Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         125 NSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             STTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            98874322        256788899887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.9e-07  Score=70.97  Aligned_cols=63  Identities=24%  Similarity=0.132  Sum_probs=39.1

Q ss_pred             HHhhcCcCCcEEEcccCCCcccC---cccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCC
Q psy10538        120 DVLRYFRSLEELLLDANHIRDLP---KNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN  182 (288)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n  182 (288)
                      ..+..++.|++|++++|+|+.++   ..+..+++|+.|++++|.++.+++. ......|+.+++++|
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            34456777888888888777553   3345567777777777777766442 223334556666666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=1.1e-05  Score=61.11  Aligned_cols=16  Identities=19%  Similarity=0.418  Sum_probs=8.2

Q ss_pred             cCCCccEEecCCCCCc
Q psy10538        147 RLNRLRKLGLSDNEIH  162 (288)
Q Consensus       147 ~l~~L~~L~l~~n~l~  162 (288)
                      ..+.|+.|++++|.+.
T Consensus        42 ~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          42 NSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TCSCCCEEECTTSCCB
T ss_pred             hCCccceeeccccccc
Confidence            3445555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=1.4e-05  Score=60.55  Aligned_cols=106  Identities=11%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CCccEEecCCC-CCc-----ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC----CChHHHhcCCCcceeecc
Q psy10538        149 NRLRKLGLSDN-EIH-----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN----VPEDVLRYFRSLEELLLD  218 (288)
Q Consensus       149 ~~L~~L~l~~n-~l~-----~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~  218 (288)
                      +.|+.|+++++ .++     .+...+...+.|++|++++|              .++.    .-...+...+.|++|+++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n--------------~l~~~~~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--------------AISDSEARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--------------CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc--------------ccchhHHHHHhhhhhhcccccceeee
Confidence            45555555542 233     12234555566777777777              5541    112344456889999999


Q ss_pred             cCcccc-----cCCccccccCCCCccEEEccCCCCcc--------CCccccCCCCCcEEECcCCCC
Q psy10538        219 ANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIHR--------LPPEIQNFENLVELDVSRNAP  271 (288)
Q Consensus       219 ~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~~--------~p~~l~~~~~L~~L~L~~N~l  271 (288)
                      +|.++.     +...   +...++|+.|++++|++..        +...+...+.|+.|+++.+..
T Consensus        81 ~n~i~~~g~~~l~~a---L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          81 SNFLTPELLARLLRS---TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SSBCCHHHHHHHHHH---TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hhhcchHHHHHHHHH---HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            998873     3333   6677889999999887553        333456688999999977643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.36  E-value=4.3e-05  Score=57.53  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=23.4

Q ss_pred             hHHhhcCcCCcEEEccc-CCCcc-----cCcccccCCCccEEecCCCCCc
Q psy10538        119 KDVLRYFRSLEELLLDA-NHIRD-----LPKNFFRLNRLRKLGLSDNEIH  162 (288)
Q Consensus       119 ~~~~~~l~~L~~L~l~~-n~i~~-----lp~~~~~l~~L~~L~l~~n~l~  162 (288)
                      .....+.++|++|++++ +.++.     +...+...++|+.|++++|.++
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            33445556777777766 34541     2223334555666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=7e-05  Score=56.30  Aligned_cols=108  Identities=11%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             cCCCccEEecCC-CCCc-----ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCC----hHHHhcCCCcceee
Q psy10538        147 RLNRLRKLGLSD-NEIH-----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP----EDVLRYFRSLEELL  216 (288)
Q Consensus       147 ~l~~L~~L~l~~-n~l~-----~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~  216 (288)
                      ..+.|+.|++++ +.++     .+...+...+.|++|++++|              .++...    ...+...++++.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n--------------~l~~~~~~~L~~~l~~~~~l~~l~   80 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--------------RSNDPVAFALAEMLKVNNTLKSLN   80 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--------------CCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC--------------cccHHHHHHHHHHHhhcccchhhh
Confidence            457888888887 4565     23344556677777777777              555211    12344568899999


Q ss_pred             cccCccc-----ccCCccccccCCCCccEEEc--cCCCCc-----cCCccccCCCCCcEEECcCCCC
Q psy10538        217 LDANHIR-----DLPKNYLDFFRLNRLRKLGL--SDNEIH-----RLPPEIQNFENLVELDVSRNAP  271 (288)
Q Consensus       217 l~~n~l~-----~l~~~~~~~~~l~~L~~L~l--~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l  271 (288)
                      +++|.++     .+...   +...++|+.+++  ++|.++     .+...+...+.|+.|++..+..
T Consensus        81 l~~~~~~~~g~~~l~~~---l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          81 VESNFISGSGILALVEA---LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CCSSCCCHHHHHHHHHG---GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hccccccchhHHHHHHH---HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            9988876     23333   667788887655  466776     3555567888999999987754