Psyllid ID: psy10562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccEEEEcccccEEEEEEEccccEEEEccEEEEEEEccccEEEEEEccEEEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEHHccEEEEEccEEEcccccHHEEEEEEEcccEEEEEcccccccEccEEcEccccHHHHHHHHHHHHHcccEEEEEccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
gqspaaadLNLLETARRCelygvklhpakdhdnILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKlhpegygyYKDIVEFLFDNRNDCKNFWKKCVEnhgffrcsavkntprqrtrvlsrgssfr
Flexible Loop (DISEMBL)
gqspaaadLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNqtkintfswakirkisfKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGffrcsavkntprqrtrvlsrgssfr
Low Complexity Region (SEG)
GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAkirkisfkrkrflikLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR
Disordered region (IsUnstruct)
********LNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAV******************
Disordered Region (DISOPRED)
**SPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGF*****************SRGSSFR
Disordered Region (DISEMBL)
GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT***************
Disordered Region (DISPRO)
***PAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQ******R*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q91VS8	1065	FERM, RhoGEF and pleckstr	yes	N/A	0.992	0.125	0.577	2e-43
O94887	1054	FERM, RhoGEF and pleckstr	yes	N/A	0.992	0.127	0.562	3e-42
Q9Y4F1	1045	FERM, RhoGEF and pleckstr	no	N/A	0.992	0.128	0.577	2e-41
Q5RAB8	1045	FERM, RhoGEF and pleckstr	yes	N/A	0.992	0.128	0.577	3e-41
Q6ZUT3	714	FERM domain-containing pr	no	N/A	0.992	0.187	0.525	3e-36
A2AD83	703	FERM domain-containing pr	no	N/A	0.992	0.190	0.518	1e-35
Q9V8R9	1698	Protein 4.1 homolog OS=Dr	no	N/A	0.985	0.078	0.411	2e-26
P11434	801	Cytoskeletal protein 4.1	N/A	N/A	0.970	0.163	0.406	3e-26
O70318	988	Band 4.1-like protein 2 O	no	N/A	0.985	0.134	0.407	4e-26
P48193	858	Protein 4.1 OS=Mus muscul	no	N/A	0.970	0.152	0.398	1e-25

>sp|Q91VS8|FARP2_MOUSE FERM, RhoGEF and pleckstrin domain-containing protein 2 OS=Mus musculus GN=Farp2 PE=1 SV=2

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQ+PA +D  +LE AR+ E+YG++ H A D +   +NL+V+HMG+LVFQ  TKINTF+W+
Sbjct: 209 GQTPAESDFQVLEIARKLEMYGIRFHMASDREGTKINLAVSHMGVLVFQGTTKINTFNWS 268

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           K+RK+SFKRKRFLIKLHPE +G Y+D +EFL  +R++CKNFWK CVE H FFR S  +  
Sbjct: 269 KVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRLSD-QPK 327

Query: 121 PRQRTRVLSRGSSFR 135
           P+ +    SRGSSFR
Sbjct: 328 PKAKAVFFSRGSSFR 342

Rho-guanine nucleotide exchange factor that activates RAC1. Plays a role in the response to class 3 semaphorins and remodeling of the actin cytoskeleton.
Mus musculus (taxid: 10090)

>sp|O94887|FARP2_HUMAN FERM, RhoGEF and pleckstrin domain-containing protein 2 OS=Homo sapiens GN=FARP2 PE=1 SV=3

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 101/135 (74%), Gaps = 1/135 (0%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQ+PA +D  +LE AR+ E+YG++ H A D +   + L+V+HMG+LVFQ  TKINTF+W+
Sbjct: 209 GQTPAESDFQVLEIARKLEMYGIRFHMASDREGTKIQLAVSHMGVLVFQGTTKINTFNWS 268

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           K+RK+SFKRKRFLIKLHPE +G Y+D +EFL  +R++CKNFWK CVE H FFR    +  
Sbjct: 269 KVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRL-LDQPK 327

Query: 121 PRQRTRVLSRGSSFR 135
           P+ +    SRGSSFR
Sbjct: 328 PKAKAVFFSRGSSFR 342

Rho-guanine nucleotide exchange factor that activates RAC1. Plays a role in the response to class 3 semaphorins and remodeling of the actin cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q9Y4F1|FARP1_HUMAN FERM, RhoGEF and pleckstrin domain-containing protein 1 OS=Homo sapiens GN=FARP1 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 101/135 (74%), Gaps = 1/135 (0%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQ+PA +D  LLE ARR E+YG++LHPAKD +   +NL+VA+ GILVFQ  TKIN F+WA
Sbjct: 205 GQTPAESDFQLLEIARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWA 264

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           K+RK+SFKRKRFLIKL P+    Y+D +EFL  +R+ CK+FWK CVE+H FFR    +  
Sbjct: 265 KVRKLSFKRKRFLIKLRPDANSAYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFE-EPK 323

Query: 121 PRQRTRVLSRGSSFR 135
           P+ +  + SRGSSFR
Sbjct: 324 PKPKPVLFSRGSSFR 338

May function as Rho-guanine nucleotide exchange factor.

Homo sapiens (taxid: 9606)

>sp|Q5RAB8|FARP1_PONAB FERM, RhoGEF and pleckstrin domain-containing protein 1 OS=Pongo abelii GN=FARP1 PE=2 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 101/135 (74%), Gaps = 1/135 (0%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQ+PA +D  LLE ARR E+YG++LHPAKD +   +NL+VA+ GILVFQ  TKIN F+WA
Sbjct: 205 GQTPAESDFQLLEIARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWA 264

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           K+RK+SFKRKRFLIKL P+    Y+D +EFL  +R+ CK+FWK CVE+H FFR    +  
Sbjct: 265 KVRKLSFKRKRFLIKLRPDANSAYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFE-EPK 323

Query: 121 PRQRTRVLSRGSSFR 135
           P+ +  + SRGSSFR
Sbjct: 324 PKPKPVLFSRGSSFR 338

May function as Rho-guanine nucleotide exchange factor.

Pongo abelii (taxid: 9601)

>sp|Q6ZUT3|FRMD7_HUMAN FERM domain-containing protein 7 OS=Homo sapiens GN=FRMD7 PE=1 SV=1

 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 97/135 (71%), Gaps = 1/135 (0%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           G+SPA +D+ LL+ AR+ ++YG++ HPA D + + ++L+VAHMG+LV +  TKINTF+WA
Sbjct: 167 GRSPAESDILLLDIARKLDMYGIRPHPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWA 226

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRK+SFKRK FLIKLH       KD +EF   +R+ CK FWK CVE H FFR S    +
Sbjct: 227 KIRKLSFKRKHFLIKLHANILVLCKDTLEFTMASRDACKAFWKTCVEYHAFFRLSEEPKS 286

Query: 121 PRQRTRVLSRGSSFR 135
            + +T + S+GSSFR
Sbjct: 287 -KPKTLLCSKGSSFR 300

Plays a role in neurite development (By similarity). May play a specific role in the control of eye movement and gaze stability.

Homo sapiens (taxid: 9606)

>sp|A2AD83|FRMD7_MOUSE FERM domain-containing protein 7 OS=Mus musculus GN=Frmd7 PE=1 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 96/135 (71%), Gaps = 1/135 (0%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           G+SPA +D+ LL+ AR+ ++YG++  PA D + + ++L+VAHMG+LV +  TKINTF+WA
Sbjct: 167 GRSPAESDILLLDIARKLDMYGIRPQPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWA 226

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRK+SFKRK FLIKLH       KD +EF   +R+ CK FWK CVE H FFR S    +
Sbjct: 227 KIRKLSFKRKHFLIKLHANILVLCKDTLEFTMASRDACKAFWKTCVEYHAFFRLSEEPKS 286

Query: 121 PRQRTRVLSRGSSFR 135
            + +T + S+GSSFR
Sbjct: 287 -KPKTLLCSKGSSFR 300

Plays a role in neurite development.

Mus musculus (taxid: 10090)

>sp|Q9V8R9|41_DROME Protein 4.1 homolog OS=Drosophila melanogaster GN=cora PE=1 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 3/136 (2%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA A+L+ LE A++  +YGV LHPAKD + + + L V   G+LV++++ +IN F+W 
Sbjct: 199 GQSPAEAELHYLENAKKLAMYGVDLHPAKDSEGVDIMLGVCASGLLVYRDKLRINRFAWP 258

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KI KIS+KR  F IK+ P  +  Y+  + F   N    K  WK CVE+H FFR   +   
Sbjct: 259 KILKISYKRHHFYIKIRPGEFEQYESTIGFKLANHRAAKKLWKSCVEHHTFFRL--MTPE 316

Query: 121 PRQRTRVLSR-GSSFR 135
           P  ++++    GS++R
Sbjct: 317 PVSKSKMFPVFGSTYR 332

An integral component of the septate junction. May play a role in cell-cell interactions that are necessary for proper development. Vital for embryonic development.

Drosophila melanogaster (taxid: 7227)

>sp|P11434|41_XENLA Cytoskeletal protein 4.1 OS=Xenopus laevis GN=epb41 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 2/133 (1%)

Query: 3   SPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKI 62
           +PA ADL  LE A++  +YGV +H AKD + + + L V   G++VF++  +IN F W K+
Sbjct: 361 TPAQADLEFLENAKKLTMYGVDIHQAKDLEGVDIKLGVCSGGLMVFKDNLRINRFPWPKV 420

Query: 63  RKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPR 122
            KIS+KR  F IK+ P     Y+  + F   +    K  WK CVE+H FFR ++ ++ P+
Sbjct: 421 LKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYKAAKKLWKVCVEHHTFFRLTSTESIPK 480

Query: 123 QRTRVLSRGSSFR 135
              R LS GS+FR
Sbjct: 481 H--RFLSLGSTFR 491

Protein 4.1 is a major structural element of the erythrocyte membrane skeleton. It plays a key role in regulating membrane physical properties of mechanical stability and deformability by stabilizing spectrin-actin interaction.

Xenopus laevis (taxid: 8355)

>sp|O70318|E41L2_MOUSE Band 4.1-like protein 2 OS=Mus musculus GN=Epb41l2 PE=1 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           G SPA AD   LE A+R  +YGV LH AKD + + + L V   G+L+++++ +IN F+W 
Sbjct: 377 GLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANGLLIYKDRLRINRFAWP 436

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KI KIS+KR  F IK+ P     ++  + F   N    K  WK CVE+H F+R  + +  
Sbjct: 437 KILKISYKRSNFYIKVRPAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRLVSPEQP 496

Query: 121 PRQRTRVLSRGSSFR 135
           P  +T+ L+ GS FR
Sbjct: 497 P--KTKFLTLGSKFR 509

Mus musculus (taxid: 10090)

>sp|P48193|41_MOUSE Protein 4.1 OS=Mus musculus GN=Epb41 PE=1 SV=2

 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 2/133 (1%)

Query: 3   SPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKI 62
           +PA ADL  LE A++  +YGV LH AKD + + + L V   G+LV++++ +IN F W K+
Sbjct: 379 TPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKV 438

Query: 63  RKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPR 122
            KIS+KR  F IK+ P    +Y+  + F   +    K  WK CVE+H FFR ++    P 
Sbjct: 439 LKISYKRSSFFIKIRPGEQEHYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIP- 497

Query: 123 QRTRVLSRGSSFR 135
            +++ L+ GS FR
Sbjct: 498 -KSKFLALGSKFR 509

Protein 4.1 is a major structural element of the erythrocyte membrane skeleton. It plays a key role in regulating membrane physical properties of mechanical stability and deformability by stabilizing spectrin-actin interaction. Recruits DLG1 to membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
189237184	3113	PREDICTED: similar to Cdep CG31536-PE [T	1.0	0.043	0.859	8e-69
383847386	3219	PREDICTED: uncharacterized protein LOC10	1.0	0.041	0.859	7e-68
307182693	3311	FERM, RhoGEF and pleckstrin domain-conta	1.0	0.040	0.859	7e-68
332023216	3267	FERM, RhoGEF and pleckstrin domain-conta	1.0	0.041	0.859	1e-67
307198853	3358	FERM, RhoGEF and pleckstrin domain-conta	1.0	0.040	0.851	3e-67
350407968	3363	PREDICTED: hypothetical protein LOC10074	1.0	0.040	0.851	6e-67
340722043	3394	PREDICTED: hypothetical protein LOC10064	1.0	0.039	0.851	6e-67
345490744	3196	PREDICTED: hypothetical protein LOC10067	1.0	0.042	0.844	8e-67
194746574	4295	GF18918 [Drosophila ananassae] gi|190628	1.0	0.031	0.837	2e-66
442617466	4273	cdep, isoform G [Drosophila melanogaster	1.0	0.031	0.837	2e-66

>gi|189237184|ref|XP_966992.2| PREDICTED: similar to Cdep CG31536-PE [Tribolium castaneum]

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 116/135 (85%), Positives = 126/135 (93%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+N+ LNL+VAHMGI+VFQN TKINTFSWA
Sbjct: 220 GQSPAEADLNLLETARRCELYGIKMHPAKDHENVPLNLAVAHMGIIVFQNYTKINTFSWA 279

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS+VKN 
Sbjct: 280 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSSVKNV 339

Query: 121 PRQRTRVLSRGSSFR 135
            R +TRVLSRGSSFR
Sbjct: 340 SRHKTRVLSRGSSFR 354

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847386|ref|XP_003699335.1| PREDICTED: uncharacterized protein LOC100883306 [Megachile rotundata]

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 116/135 (85%), Positives = 125/135 (92%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+N+ LNL+VAHMGI+VFQN TKINTFSWA
Sbjct: 214 GQSPAEADLNLLETARRCELYGMKMHPAKDHENVPLNLAVAHMGIVVFQNYTKINTFSWA 273

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 274 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 333

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 334 VRQKTRVLSRGSSFR 348

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182693|gb|EFN69817.1| FERM, RhoGEF and pleckstrin domain-containing protein 2 [Camponotus floridanus]

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 116/135 (85%), Positives = 125/135 (92%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+N+ LNL+VAHMGI+VFQN TKINTFSWA
Sbjct: 212 GQSPAEADLNLLETARRCELYGMKMHPAKDHENVPLNLAVAHMGIVVFQNYTKINTFSWA 271

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 272 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 331

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 332 VRQKTRVLSRGSSFR 346

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023216|gb|EGI63472.1| FERM, RhoGEF and pleckstrin domain-containing protein 2 [Acromyrmex echinatior]

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 116/135 (85%), Positives = 125/135 (92%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+N+ LNL+VAHMGI+VFQN TKINTFSWA
Sbjct: 198 GQSPAEADLNLLETARRCELYGMKMHPAKDHENVPLNLAVAHMGIVVFQNYTKINTFSWA 257

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 258 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 317

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 318 VRQKTRVLSRGSSFR 332

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198853|gb|EFN79629.1| FERM, RhoGEF and pleckstrin domain-containing protein 2 [Harpegnathos saltator]

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 115/135 (85%), Positives = 124/135 (91%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+N+ LNL+VAHMGI+VFQN  KINTFSWA
Sbjct: 211 GQSPAEADLNLLETARRCELYGMKMHPAKDHENVPLNLAVAHMGIVVFQNYNKINTFSWA 270

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 271 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 330

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 331 VRQKTRVLSRGSSFR 345

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407968|ref|XP_003488256.1| PREDICTED: hypothetical protein LOC100741855 [Bombus impatiens]

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 115/135 (85%), Positives = 124/135 (91%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+ + LNL+VAHMGI+VFQN TKINTFSWA
Sbjct: 214 GQSPAEADLNLLETARRCELYGMKMHPAKDHEGVPLNLAVAHMGIVVFQNFTKINTFSWA 273

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 274 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 333

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 334 VRQKTRVLSRGSSFR 348

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722043|ref|XP_003399420.1| PREDICTED: hypothetical protein LOC100648719 [Bombus terrestris]

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 115/135 (85%), Positives = 124/135 (91%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+ + LNL+VAHMGI+VFQN TKINTFSWA
Sbjct: 214 GQSPAEADLNLLETARRCELYGMKMHPAKDHEGVPLNLAVAHMGIVVFQNFTKINTFSWA 273

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 274 KIRKISFKRKRFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 333

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 334 VRQKTRVLSRGSSFR 348

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490744|ref|XP_003426445.1| PREDICTED: hypothetical protein LOC100678050 [Nasonia vitripennis]

 Score =  258 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 114/135 (84%), Positives = 125/135 (92%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKDH+N+ LNL+VAHMGI+VFQ+ TKINTFSWA
Sbjct: 217 GQSPAEADLNLLETARRCELYGMKMHPAKDHENVPLNLAVAHMGIIVFQHYTKINTFSWA 276

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRK+FLIKLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRCS VK  
Sbjct: 277 KIRKISFKRKKFLIKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCSVVKRV 336

Query: 121 PRQRTRVLSRGSSFR 135
            RQ+TRVLSRGSSFR
Sbjct: 337 TRQKTRVLSRGSSFR 351

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746574|ref|XP_001955755.1| GF18918 [Drosophila ananassae] gi|190628792|gb|EDV44316.1| GF18918 [Drosophila ananassae]

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/135 (83%), Positives = 126/135 (93%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKD + + LNL+VAHMGI VFQN T+INTFSWA
Sbjct: 237 GQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWA 296

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFL+KLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRC+AV+NT
Sbjct: 297 KIRKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNT 356

Query: 121 PRQRTRVLSRGSSFR 135
           PR++TRVLSRGSSFR
Sbjct: 357 PRRKTRVLSRGSSFR 371

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442617466|ref|NP_001097685.2| cdep, isoform G [Drosophila melanogaster] gi|440217075|gb|ABW08601.2| cdep, isoform G [Drosophila melanogaster]

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/135 (83%), Positives = 126/135 (93%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA ADLNLLETARRCELYG+K+HPAKD + + LNL+VAHMGI VFQN T+INTFSWA
Sbjct: 239 GQSPAEADLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWA 298

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
           KIRKISFKRKRFL+KLHPEGYGYYKD VEF F+ RN+CKNFWKKCVENHGFFRC+AV+NT
Sbjct: 299 KIRKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNT 358

Query: 121 PRQRTRVLSRGSSFR 135
           PR++TRVLSRGSSFR
Sbjct: 359 PRRKTRVLSRGSSFR 373

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
RGD|1308003	1060	Farp2 "FERM, RhoGEF and plecks	0.992	0.126	0.481	1.3e-30
UNIPROTKB|J9NXA4	612	FARP2 "Uncharacterized protein	0.977	0.215	0.474	1.5e-30
MGI|MGI:2385126	1065	Farp2 "FERM, RhoGEF and plecks	0.992	0.125	0.481	2.2e-30
WB|WBGene00001490	1091	frm-3 [Caenorhabditis elegans	0.992	0.122	0.5	3e-30
UNIPROTKB|E2R9U9	1038	FARP2 "Uncharacterized protein	0.977	0.127	0.474	5.7e-30
UNIPROTKB|F5GZ84	638	FARP2 "FERM, RhoGEF and plecks	0.992	0.210	0.466	1.3e-29
UNIPROTKB|I3LPW8	506	I3LPW8 "Uncharacterized protei	0.992	0.264	0.481	2.4e-29
UNIPROTKB|E1C5B7	1053	E1C5B7 "Uncharacterized protei	0.992	0.127	0.474	2.6e-29
ZFIN|ZDB-GENE-030131-2993	1044	farp2 "FERM, RhoGEF and plecks	0.992	0.128	0.466	3.2e-29
UNIPROTKB|O94887	1054	FARP2 "FERM, RhoGEF and plecks	0.992	0.127	0.466	4.2e-29

RGD|1308003 Farp2 "FERM, RhoGEF and pleckstrin domain protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 349 (127.9 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 65/135 (48%), Positives = 89/135 (65%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ H A D +   +NL+V+HMG+LVFQ  TKINTF+W+
Sbjct:   209 GQTPADSDFQVLEIARKLEMYGIRFHMASDREGTKINLAVSHMGVLVFQGTTKINTFNWS 268

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE +G Y+D +EFL  +R++CKNFWK CVE+H FFR S  +  
Sbjct:   269 KVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEHHTFFRLSD-QPK 327

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +    SRGSSFR
Sbjct:   328 PKAKAVFFSRGSSFR 342

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISO

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA;ISO

GO:0016601 "Rac protein signal transduction" evidence=IEA;ISO

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

UNIPROTKB|J9NXA4 FARP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 343 (125.8 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 65/137 (47%), Positives = 90/137 (65%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ HPA D +   +NL+V+HMG+LVFQ  TKINTF+W+
Sbjct:   216 GQTPAESDFQVLEIARKLEMYGIRFHPASDREGARINLAVSHMGVLVFQGTTKINTFNWS 275

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE  G Y+D +EFL  +R++CKNFWK CVE H FFR   + + 
Sbjct:   276 RVRKLSFKRKRFLIKLHPEVRGPYQDTLEFLLGSRDECKNFWKICVEYHTFFR---LFDQ 332

Query:   121 PRQRTRVL--SRGSSFR 135
             P+ + + +  SRGSSFR
Sbjct:   333 PKAKAKAVFFSRGSSFR 349

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

MGI|MGI:2385126 Farp2 "FERM, RhoGEF and pleckstrin domain protein 2" [Mus musculus (taxid:10090)]

 Score = 347 (127.2 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 65/135 (48%), Positives = 88/135 (65%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ H A D +   +NL+V+HMG+LVFQ  TKINTF+W+
Sbjct:   209 GQTPAESDFQVLEIARKLEMYGIRFHMASDREGTKINLAVSHMGVLVFQGTTKINTFNWS 268

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE +G Y+D +EFL  +R++CKNFWK CVE H FFR S  +  
Sbjct:   269 KVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRLSD-QPK 327

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +    SRGSSFR
Sbjct:   328 PKAKAVFFSRGSSFR 342

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016322 "neuron remodeling" evidence=ISO

GO:0016601 "Rac protein signal transduction" evidence=ISO

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=ISO

WB|WBGene00001490 frm-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 346 (126.9 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/136 (50%), Positives = 85/136 (62%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             G +P  +DL +LE ARRC+ YGVKLH AKD D     LSV H+GI VF+      TFSWA
Sbjct:   194 GMTPGESDLAMLEVARRCDFYGVKLHAAKDIDGNDAALSVMHLGIKVFRQLQLDTTFSWA 253

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHP+ Y Y K+ VEF F+ R++CKNFWKKCVE+H FFRC   +  
Sbjct:   254 RIRKLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWKKCVEHHAFFRCVQAEE- 312

Query:   121 PRQRTRV-LSRGSSFR 135
             P++ TR  +S+GSSFR
Sbjct:   313 PKKETRFFISKGSSFR 328

GO:0005737 "cytoplasm" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

UNIPROTKB|E2R9U9 FARP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 343 (125.8 bits), Expect = 5.7e-30, P = 5.7e-30
 Identities = 65/137 (47%), Positives = 90/137 (65%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ HPA D +   +NL+V+HMG+LVFQ  TKINTF+W+
Sbjct:   216 GQTPAESDFQVLEIARKLEMYGIRFHPASDREGARINLAVSHMGVLVFQGTTKINTFNWS 275

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE  G Y+D +EFL  +R++CKNFWK CVE H FFR   + + 
Sbjct:   276 RVRKLSFKRKRFLIKLHPEVRGPYQDTLEFLLGSRDECKNFWKICVEYHTFFR---LFDQ 332

Query:   121 PRQRTRVL--SRGSSFR 135
             P+ + + +  SRGSSFR
Sbjct:   333 PKAKAKAVFFSRGSSFR 349

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F5GZ84 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 63/135 (46%), Positives = 86/135 (63%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ H A D +   + L+V+HMG+LVFQ  TKINTF+W+
Sbjct:   209 GQTPAESDFQVLEIARKLEMYGIRFHMASDREGTKIQLAVSHMGVLVFQGTTKINTFNWS 268

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE +G Y+D +EFL  +R++CKNFWK CVE H FFR    +  
Sbjct:   269 KVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRLLD-QPK 327

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +    SRGSSFR
Sbjct:   328 PKAKAVFFSRGSSFR 342

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

UNIPROTKB|I3LPW8 I3LPW8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 328 (120.5 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 65/135 (48%), Positives = 86/135 (63%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  LLE ARR E+YG++LHPAKD +   +NL+VA+ GILVFQ  TKIN F+WA
Sbjct:   113 GQTPAESDFQLLEIARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWA 172

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            L P+    Y+D +EFL  +R+ CK+FWK CVE+H FFR    +  
Sbjct:   173 KVRKLSFKRKRFLIKLRPDVNSSYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFE-EPK 231

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +  + SRGSSFR
Sbjct:   232 PKPKPVLFSRGSSFR 246

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|E1C5B7 E1C5B7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 337 (123.7 bits), Expect = 2.6e-29, P = 2.6e-29
 Identities = 64/135 (47%), Positives = 86/135 (63%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ H A D +   +NL+V+HMG+LVFQ  TKINTF+W+
Sbjct:   218 GQTPAESDFQVLEIARKLEMYGIRFHLASDREGTKINLAVSHMGVLVFQGNTKINTFNWS 277

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE  G Y+D +EFL  +R++CKNFWK CVE H FFR    +  
Sbjct:   278 KVRKLSFKRKRFLIKLHPEVCGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRLFD-QPK 336

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +    SRGSSFR
Sbjct:   337 PKAKAVFFSRGSSFR 351

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030131-2993 farp2 "FERM, RhoGEF and pleckstrin domain protein 2" [Danio rerio (taxid:7955)]

 Score = 336 (123.3 bits), Expect = 3.2e-29, P = 3.2e-29
 Identities = 63/135 (46%), Positives = 86/135 (63%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E++GV+ HPA D +   +NL+VAHMG+ VFQ  TKINTF+W+
Sbjct:   216 GQTPAESDFQVLEIARKLEMFGVRFHPAADREGTKINLAVAHMGLQVFQGHTKINTFNWS 275

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE +G ++D +EFL  +R+ CK FWK CVE+H FFR    +  
Sbjct:   276 KIRKLSFKRKRFLIKLHPEVHGPHQDTLEFLMGSRDQCKIFWKNCVEHHSFFRLLD-QPQ 334

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +    SRGSSFR
Sbjct:   335 PKSKAIFFSRGSSFR 349

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

UNIPROTKB|O94887 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 63/135 (46%), Positives = 86/135 (63%)

Query:     1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             GQ+PA +D  +LE AR+ E+YG++ H A D +   + L+V+HMG+LVFQ  TKINTF+W+
Sbjct:   209 GQTPAESDFQVLEIARKLEMYGIRFHMASDREGTKIQLAVSHMGVLVFQGTTKINTFNWS 268

Query:    61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNT 120
                            LHPE +G Y+D +EFL  +R++CKNFWK CVE H FFR    +  
Sbjct:   269 KVRKLSFKRKRFLIKLHPEVHGPYQDTLEFLLGSRDECKNFWKICVEYHTFFRLLD-QPK 327

Query:   121 PRQRTRVLSRGSSFR 135
             P+ +    SRGSSFR
Sbjct:   328 PKAKAVFFSRGSSFR 342

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016322 "neuron remodeling" evidence=IDA

GO:0016601 "Rac protein signal transduction" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94887	FARP2_HUMAN	No assigned EC number	0.5629	0.9925	0.1271	yes	N/A
Q91VS8	FARP2_MOUSE	No assigned EC number	0.5777	0.9925	0.1258	yes	N/A
Q5RAB8	FARP1_PONAB	No assigned EC number	0.5777	0.9925	0.1282	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
cd13193	122	cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleck	3e-80
cd13189	123	cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine	1e-46
cd13184	113	cd13184, FERM_C_4_1_family, Protein 4	3e-39
pfam09380	90	pfam09380, FERM_C, FERM C-terminal PH-like domain	2e-33
cd13186	111	cd13186, FERM_C_NBL4_NBL5, Novel band 4	7e-31
cd13192	105	cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containin	2e-21
cd00836	91	cd00836, FERM_C-lobe, FERM domain C-lobe	2e-17
cd13195	131	cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligas	1e-11
cd13188	111	cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine ph	2e-10
cd13185	109	cd13185, FERM_C_FRMD1_FRMD6, FERM domain containin	2e-06
cd13187	124	cd13187, FERM_C_PTPH13, Protein tyrosine phosphata	6e-06
cd13194	97	cd13194, FERM_C_ERM, ERM family FERM domain C-lobe	1e-05

>gnl|CDD|241347 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins FERM domain

 Score =  231 bits (592), Expect = 3e-80
 Identities = 88/122 (72%), Positives = 103/122 (84%)

Query: 13  ETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRF 72
           + ARRCELYG++LHPAKD + + LNL+VAHMGILVFQ  TKINTFSWAKIRK+SFKRKRF
Sbjct: 1   DIARRCELYGIRLHPAKDREGVDLNLAVAHMGILVFQGFTKINTFSWAKIRKLSFKRKRF 60

Query: 73  LIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGS 132
           LIKLHPE YGYYKD VEF F++RN+CK+FWKKC+E+H FFR S V   P  + R+ SRGS
Sbjct: 61  LIKLHPEAYGYYKDTVEFSFESRNECKSFWKKCIEHHAFFRLSEVPKPPSPKPRLFSRGS 120

Query: 133 SF 134
           SF
Sbjct: 121 SF 122

Members here include FARP1 (also called Chondrocyte-derived ezrin-like protein; PH domain-containing family C member 2), FARP2 (also called FIR/FERM domain including RhoGEF; FGD1-related Cdc42-GEF/FRG), and FRMD7(FERM domain containing 7). FARP1 and FARP2 are members of the Dbl family guanine nucleotide exchange factors (GEFs) which are upstream positive regulators of Rho GTPases. FARP1 has increased expression in differentiated chondrocytes. FARP2 is thought to regulate neurite remodeling by mediating the signaling pathways from membrane proteins to Rac. It is found in brain, lung, and testis, as well as embryonic hippocampal and cortical neurons. These members are composed of a N-terminal FERM domain, a proline-rich (PR) domain, Dbl-homology (DH), and two C-terminal PH domains. Other members in this family do not contain the DH domains such as the Human FERM domain containing protein 7 and Caenorhabditis elegans CFRM3, both of which have unknown functions. They contain an N-terminal FERM domain, a PH domain, followed by a FA (FERM adjacent) domain. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 122

>gnl|CDD|241343 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine phosphatase non-receptor proteins 3 and 4 (PTPN4 and PTPN3) FERM domain C-lobe

 Score =  146 bits (370), Expect = 1e-46
 Identities = 62/113 (54%), Positives = 74/113 (65%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQSPA A+ N L TAR  ELYGV+LH A+D  N+ L + V   GILVFQN  +INTF W+
Sbjct: 1   GQSPAEAEFNFLNTARTLELYGVELHSARDASNLELQVGVTSGGILVFQNGIRINTFPWS 60

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
           KI KISFKRK+F I+L  E       I+ F   +   CKN WK CVE+H FFR
Sbjct: 61  KIVKISFKRKQFFIQLRREPSESRDTILGFNMLSYRACKNLWKSCVEHHTFFR 113

PTPN4 (also called PTPMEG, protein tyrosine phosphatase, megakaryocyte) is a cytoplasmic protein-tyrosine phosphatase (PTP) thought to play a role in cerebellar function. PTPMEG-knockout mice have impaired memory formation and cerebellar long-term depression. PTPN3/PTPH1 is a membrane-associated PTP that is implicated in regulating tyrosine phosphorylation of growth factor receptors, p97 VCP (valosin-containing protein, or Cdc48 in Saccharomyces cerevisiae), and HBV (Hepatitis B Virus) gene expression; it is mutated in a subset of colon cancers. PTPMEG and PTPN3/PTPH1 contains a N-terminal FERM domain, a middle PDZ domain, and a C-terminal phosphatase domain. PTP1/Tyrosine-protein phosphatase 1 from nematodes and a FERM_C repeat 1 from Tetraodon nigroviridis also included in this cd. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 123

>gnl|CDD|241338 cd13184, FERM_C_4_1_family, Protein 4

 Score =  127 bits (321), Expect = 3e-39
 Identities = 53/113 (46%), Positives = 72/113 (63%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           GQ+PA A+L+ LE A++  LYGV LHPAKD + + + L V   GILV++++ +IN F+W 
Sbjct: 1   GQTPAEAELHFLENAKKLALYGVDLHPAKDSEGVDIMLGVCAGGILVYRDRLRINRFAWP 60

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
           KI KIS+KR  F IKL P  +   +  + F   N    K  WK CVE+H FFR
Sbjct: 61  KILKISYKRNNFYIKLRPGEFEQSETTIGFKLPNHRAAKRLWKVCVEHHTFFR 113

1 family FERM domain C-lobe. The protein 4.1 family includes four well-defined members: erythroid protein 4.1 (4.1R), the bestknown and characterized member, 4.1G (general), 4.1N (neuronal), and 4.1 B (brain). The less well understood 4.1O/FRMD3 is not a true member of this family and is not included in this hierarchy. Besides three highly conserved domains, FERM, SAB (spectrin and actin binding domain) and CTD (C-terminal domain), the proteins from this family contain several unique domains: U1, U2 and U3. FERM domains like other members of the FERM domain superfamily have a cloverleaf architecture with three distinct lobes (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The brain is a particularly rich source of protein 4.1 isoforms. The various 4.1R, 4.1G, 4.1N, and 4.1B mRNAs are all expressed in distinct patterns within the brain. It is likely that 4.1 proteins play important functional roles in the brain including motor coordination and spatial learning, postmitotic differentiation, and synaptic architecture and function. In addition they are found in nonerythroid, nonneuronal cells where they may play a general structural role in nuclear architecture and/or may interact with splicing factors. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 113

>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain

 Score =  112 bits (282), Expect = 2e-33
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 30  DHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVE 89
           D     L L V+  GILV+++  KINTF W++IRKISFKRK+FLIKL  E     +  + 
Sbjct: 1   DKKGTDLWLGVSAKGILVYEDNNKINTFPWSEIRKISFKRKKFLIKLRDE-DESKETTLT 59

Query: 90  FLFDNRNDCKNFWKKCVENHGFFRC 114
           F   +   CK  WK CVE H FFR 
Sbjct: 60  FYTPSPRACKYLWKLCVEQHAFFRL 84

Length = 90

>gnl|CDD|241340 cd13186, FERM_C_NBL4_NBL5, Novel band 4

 Score =  106 bits (266), Expect = 7e-31
 Identities = 45/111 (40%), Positives = 62/111 (55%)

Query: 3   SPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKI 62
           +PA A+LN L  A+  E+YGV LHP K  D     L +   GILV++N+TKI  F W KI
Sbjct: 1   TPAEAELNYLNKAKWLEMYGVDLHPVKGEDGNEYFLGLTPTGILVYENKTKIGLFFWPKI 60

Query: 63  RKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
            K+ FK K+  + +  +     +    F   N+  CK+ WK  VE+H FFR
Sbjct: 61  TKLDFKGKKLKLVVVEKDEQEQEHTFVFRLPNKKACKHLWKCAVEHHAFFR 111

1-like protein 4 and 5 FERM (NBL4 and 5) domain C-lobe. NBL4 (also called Erythrocyte protein band 4.1-like 4; Epb4 1l4) plays a role the beta-catenin/Tcf signaling pathway and is thought to be involved in establishing the cell polarity or proliferation. NBL4 may be also involved in adhesion, in cell motility and/or in cell-to-cell communication. No role for NBL5 has been proposed to date. Both NBL4 and NBL5 contain a N-terminal FERM domain which has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). A single FERM_C repeat 2 from Tetraodon nigroviridis also included in this cdThe C-lobe is a member of the PH superfamily. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 111

>gnl|CDD|241346 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containing protein 3 and 5 FERM (FRMD3 and 5) domain C-lobe

 Score = 81.7 bits (202), Expect = 2e-21
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 7   ADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKIS 66
           A+LN L  A   E YGV  HP KDH    L L   H G++VFQ   +++ F W  I K +
Sbjct: 1   AELNFLRKAHTLETYGVDPHPVKDHYGTQLYLGFTHTGVVVFQGGKRVHHFKWDDISKFN 60

Query: 67  FKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
           ++ K F++ +        K  + F       CK+ WK  VEN  F++
Sbjct: 61  YEGKTFILHVMQNEEK--KHTLGFKCPTPAACKHLWKCAVENQAFYK 105

FRMD3 (also called Band 4.1-like protein 4O/4.1O though it is not a true member of that family) is a novel putative tumor suppressor gene that is implicated in the origin and progression of lung cancer. In humans there are 5 isoforms that are produced by alternative splicing. Less is known about FRMD5, though there are 2 isoforms of the human protein are produced by alternative splicing. Both FRMD3 and FRMD5 contain a N-terminal FERM domain, followed by a FERM adjacent (FA) domain, and 4.1 protein C-terminal domain (CTD). The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 105

>gnl|CDD|241233 cd00836, FERM_C-lobe, FERM domain C-lobe

 Score = 71.3 bits (175), Expect = 2e-17
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 22  GVKLHPAKDHD-NILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFKRKRFLIKLHP 78
           GV+    KD      L L V+  GI V  + T   +  F W +IRKISF +K F I++  
Sbjct: 1   GVEFFDVKDKSGGSELILGVSLEGISVLDDNTGNPLTLFRWPEIRKISFSKKTFTIEIRG 60

Query: 79  EGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
           +     ++ + F   +  + K  WK CV  H F+R
Sbjct: 61  DK----EEKLAFQTSSPREAKYIWKLCVGYHRFYR 91

The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 91

>gnl|CDD|241349 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligase myosin regulatory light chain-interacting protein (MYLIP; also called inducible degrader of the LDL receptor, IDOL) FERM domain C-lobe

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 13/138 (9%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVF-QNQTKINTFSW 59
           G SP+ A+   L+     E YGV+    +  +   L + V   GI +   +   I    +
Sbjct: 1   GMSPSTAEYLFLKEVSELENYGVETFHVRTIEGQKLVIGVGPDGIRICNDDGELIQRIPY 60

Query: 60  AKIRKISFKRKRFLIKLHPEGYGYYKD-----IVEFLFDNRNDCKNFWKKCVENHGFFRC 114
             I+  +   K F +        Y  D      +EF   +       ++   E H F+RC
Sbjct: 61  TAIQMATSSGKVFTLT-------YLSDDGDVTKLEFKLPSTRAASALYRAITEKHAFYRC 113

Query: 115 SAVKNTPRQRTRVLSRGS 132
             V++    +     +G+
Sbjct: 114 ETVRSAVTDQFSRDLKGT 131

MYLIP/IDOL is a regulator of the LDL receptor (LDLR) pathway via the nuclear receptor liver X receptor (LXR). In response to cellular cholesterol loading, the activation of LXR leads to the induction of MYLIP expression. MYLIP stimulates ubiquitination of the LDLR on its cytoplasmic tail, directing its degradation. The LXR-MYLIP-LDLR pathway provides a complementary pathway to sterol regulatory element-binding proteins for the feedback inhibition of cholesterol uptake. MYLIP has an N-terminal FERM domain and in some cases a C-terminal RING domain. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 131

>gnl|CDD|241342 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine phosphatase non-receptor proteins 14 and 21 (PTPN14 and 21) FERM domain

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILV-FQNQTKINTFSW 59
           G SPA A+L  ++   + + YG + +PAKD+    + +  +  GI V  +N      F W
Sbjct: 1   GLSPAEAELLYIQEVEQLDGYGEESYPAKDNQGNDIFIGASFEGIFVKHKNGRPPVVFKW 60

Query: 60  AKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
             I  IS  +  F ++L  +      + ++F  ++    K  W+ CV  H F+R
Sbjct: 61  NDIGNISHNKSFFSVELINKE-----ETIQFQMEDAETAKYVWRMCVARHKFYR 109

This CD contains PTP members: pez/PTPN14 and PTPN21. A number of mutations in Pez have been shown to be associated with breast and colorectal cancer. The PTPN protein family belong to larger family of PTPs. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. The members are composed of a N-terminal FERM domain and a C-terminal PTP catalytic domain. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. Like most other ERM members they have a phosphoinositide-binding site in their FERM domain. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 111

>gnl|CDD|241339 cd13185, FERM_C_FRMD1_FRMD6, FERM domain containing 1 and 6 proteins FERM domain C-lobe

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 18 CELYGVKLHPAKDHDNILLNLSVAHMGILVFQN----QTKINTFSWAKIRKISFKRKRFL 73
            LY ++    +   ++LL   +   GI ++Q     +  + TF W+ I K+SF RK+F 
Sbjct: 5  AHLYRLRKSKKETTGSVLL--GITAKGIQIYQESDGEKQLLRTFPWSNIGKLSFDRKKFE 62

Query: 74 I 74
          I
Sbjct: 63 I 63

FRMD6 (also called willin and hEx/human expanded) is localized throughout the cytoplasm or along the plasma membrane The Drosophilla protein Ex is a regulator of the Hippo/SWH (Sav/Wts/Hpo) signaling pathway, a signaling pathway that plays a pivotal role in organ size control and is tumor suppression by restricting proliferation and promoting apoptosis. Surprisingly, hEx is thought to function independently of the Hippo pathway. Instead it is hypothesized that hEx inhibits progression through the S phase of the cell cycle by upregulating p21(Cip1) and downregulating Cyclin A. It is also implicated in the progression of Alzheimer disease. Not much is known about FRMD1 to date. Both FRMD1 and FRMD6 contains a single FERM domain which has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe is a member of the PH superfamily. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 109

>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 1  GQSPAAADLNLLETARRCELYGVKLH---PAKDHDNILLNLSVAHMGILVF--QNQTKIN 55
          G S   A+L  L+  ++   YGV  H     K      + L +   GI+++   N  +  
Sbjct: 1  GLSEEEAELEFLKVCQKLPEYGVHFHRVYREKKSSTGGIWLGICSRGIIIYEVHNGARTP 60

Query: 56 T--FSWAKIRKISFKRKRFLIKLHPEGY 81
             F W + +KISF RK+F+I+      
Sbjct: 61 VLRFPWRETKKISFDRKKFIIENRGGSG 88

There are many functions of PTPN13 (also called PTPL1, PTP-BAS, hPTP1E, FAP1, or PTPL1). Mice lacking PTPN13 activity have abnormal regulation of signal transducer and activator of transcription signaling in their T cells, mild impairment of motor nerve repair, and a significant reduction in the growth of retinal glia cultures. It also plays a role in adipocyte differentiation. PTPN13 contains a kinase non-catalytic C-lobe domain (KIND), a FERM domain with two potential phosphatidylinositol 4,5-biphosphate [PtdIns(4,5)P2]-binding motifs, 5 PDZ domains, and a carboxy-terminal catalytic domain. There is an nteraction between the FERM domain of PTPL1 and PtdIns(4,5)P2 which is thought to regulate the membrane localization of PTPN13. PDZ are protein/protein interaction domains so there is the potential for numerous partners that can actively participate in the regulation of its phosphatase activity or can permit direct or indirect recruitment of tyrosine phosphorylated PTPL1 substrates. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 124

>gnl|CDD|241348 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe/F3

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 21  YGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TFSWAKIRKISFKRKRFLIKLH 77
           YGV     K+     L L V  +G+ +++ + K+     F W++IR ISF  K+F+IK  
Sbjct: 2   YGVNYFEIKNKKGTDLWLGVDALGLNIYELENKLTPKIGFPWSEIRNISFNDKKFVIKPI 61

Query: 78  PEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
            +      D V F        K     C+ NH  +
Sbjct: 62  DKK---APDFV-FYSPRLRINKRILDLCMGNHELY 92

The ERM family includes ezrin, radixin, moesin and merlin. They are composed of a N-terminal FERM (ERM) domain (also called N-ERMAD (N-terminal ERM association domain)), a coiled coil region (CRR), and a C-terminal domain CERMAD (C-terminal ERM association domain) which has an F-actin-binding site (ABD). Two actin-binding sites have been identified in the middle and N-terminal domains. Merlin is structurally similar to the ERM proteins, but instead of an actin-binding domain (ABD), it contains a C-terminal domain (CTD), just like the proteins from the 4.1 family. Activated ezrin, radixin and moesin are thought to be involved in the linking of actin filaments to CD43, CD44, ICAM1-3 cell adhesion molecules, various membrane channels and receptors, such as the Na+/H+ exchanger-3 (NHE3), cystic fibrosis transmembrane conductance regulator (CFTR), and the beta2-adrenergic receptor. The ERM proteins exist in two states, a dormant state in which the FERM domain binds to its own C-terminal tail and thereby precludes binding of some partner proteins, and an activated state, in which the FERM domain binds to one of many membrane binding proteins and the C-terminal tail binds to F-actin. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain of ERM is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG3530|consensus	616		100.0
KOG3527|consensus	975		100.0
cd00836	92	FERM_C FERM_C domain. The FERM_C domain is the thi	100.0
PF09380	90	FERM_C: FERM C-terminal PH-like domain; InterPro:	99.96
KOG0792|consensus	1144		99.96
KOG3531|consensus	1036		99.87
KOG3529|consensus	596		99.74
KOG4371|consensus	1332		99.02
KOG0248|consensus	936		97.05
KOG3727|consensus	664		96.21
PF10480	200	ICAP-1_inte_bdg: Beta-1 integrin binding protein;	94.23
KOG3527|consensus	975		91.6
KOG4261|consensus	1003		89.42
KOG3531|consensus	1036		88.06
PF14317	62	YcxB: YcxB-like protein	87.01
KOG3784|consensus	407		85.92
PF14470	96	bPH_3: Bacterial PH domain	84.89
cd00934	123	PTB Phosphotyrosine-binding (PTB) domain. Phosphot	81.8

>KOG3530|consensus

Probab=100.00  E-value=1.2e-41  Score=283.98  Aligned_cols=135  Identities=39%  Similarity=0.682  Sum_probs=125.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG   80 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~   80 (135)
                      |++|++||++||++|++|||||||+|+|++++|++.+||++|.||.||.+..++..|.|++|.||.|++|+|.+++..++
T Consensus       178 GqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~kig~f~WpkI~KvdFk~kk~~L~v~edd  257 (616)
T KOG3530|consen  178 GQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKIGLFFWPKITKVDFKGKKFTLVVSEDD  257 (616)
T ss_pred             CCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCceeeEEecchheEeeccCcEEEEEEeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             CC--cceeeEEEEecChHHHHHHHHHHhhccccccccccccCCcccceeeecCccCC
Q psy10562         81 YG--YYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR  135 (135)
Q Consensus        81 ~~--~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~~~~~~~~~g~~~r  135 (135)
                      .+  .++++++|.++++.+||+|||||||||+|||+..+...+..+..+|+.||+||
T Consensus       258 ~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~~~~s~~~~ffrlGSrfR  314 (616)
T KOG3530|consen  258 DQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPVSSQSARSDFFRLGSRFR  314 (616)
T ss_pred             ccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCccccccccchhhhcceee
Confidence            43  35689999999999999999999999999999888655556778999999998

>KOG3527|consensus

Probab=100.00  E-value=1.1e-35  Score=255.91  Aligned_cols=133  Identities=39%  Similarity=0.802  Sum_probs=127.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG   80 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~   80 (135)
                      ||+|++||+.||..|.+|.||||++|++||++|++|.||||++|+.||.+..+++.|.|+.|.|++|++..|.|.+++..
T Consensus       198 g~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~lrinrfawPKilKisykR~~FyiKirPge  277 (975)
T KOG3527|consen  198 GMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGE  277 (975)
T ss_pred             CCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechhhhccccCchhhhhccceeeeEEEecCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCcceeeEEEEecChHHHHHHHHHHhhccccccccccccCCcccceeeecCccCC
Q psy10562         81 YGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR  135 (135)
Q Consensus        81 ~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~~~~~~~~~g~~~r  135 (135)
                      .+..+.++.|++++.++||+||+.|+|||+|||+..|.++|+.  .+.-.||+||
T Consensus       278 ~eq~EstigFklpnhraakrlwk~cvEHhtffrl~~Pe~~pk~--~f~~~gs~~r  330 (975)
T KOG3527|consen  278 FEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRLVSPEPPPKS--KFLVLGSKFR  330 (975)
T ss_pred             cccccccccccccchhhHHhhhHhhhhccceeeeccCCCCccc--ccccccccee
Confidence            8878899999999999999999999999999999999998885  3446888887

>cd00836 FERM_C FERM_C domain

Probab=100.00  E-value=6.4e-34  Score=190.60  Aligned_cols=92  Identities=47%  Similarity=0.851  Sum_probs=87.1

Q ss_pred             CccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecChHHHH
Q psy10562         20 LYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCK   99 (135)
Q Consensus        20 ~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak   99 (135)
                      +||||+|+|||++|++++|||++.||.||+++.++..|+|++|.+|+|++|+|.|++.+.+.  .+.++.|+++++++||
T Consensus         1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~~~~f~W~~I~~isf~~k~F~i~~~~~~~--~~~~~~f~~~s~~~~k   78 (92)
T cd00836           1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTPINEFPWPEIRKISFKRKKFTLKVRDKDG--QEITLSFQTPSHRACK   78 (92)
T ss_pred             CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCEEEEEEcccceEEEEcCCEEEEEEecCcC--ceeeEEEECCCHHHHH
Confidence            79999999999999999999999999999998899999999999999999999999998752  3578999999999999


Q ss_pred             HHHHHHhhcccccc
Q psy10562        100 NFWKKCVENHGFFR  113 (135)
Q Consensus       100 ~lw~~~ve~H~Ff~  113 (135)
                      +||++|+|||+|||
T Consensus        79 ~lwk~~ve~H~Ffr   92 (92)
T cd00836          79 YLWKLCVEQHAFFR   92 (92)
T ss_pred             HHHHHHHhhhhhcC
Confidence            99999999999997

The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.

>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4

Probab=99.96  E-value=5.1e-29  Score=165.93  Aligned_cols=87  Identities=33%  Similarity=0.643  Sum_probs=78.5

Q ss_pred             cCCCCeEEEEEeCCeeEEeeCCcee--eeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhh
Q psy10562         30 DHDNILLNLSVAHMGILVFQNQTKI--NTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVE  107 (135)
Q Consensus        30 d~~~~~~~lGvs~~GI~iy~~~~~~--~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve  107 (135)
                      |++|.+++|||+++||.||+++.++  ..|+|++|.+|+|++|+|.|++.+..   ...++.|+++++++||+||++|++
T Consensus         1 D~~~~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~k~F~I~~~~~~---~~~~~~f~~~~~~~aK~lw~~cv~   77 (90)
T PF09380_consen    1 DKNGSPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKKKKFTIEVRDES---KEIKLKFYTPSPKAAKYLWKLCVE   77 (90)
T ss_dssp             ETTSBEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEETTEEEEEESSTS---SSEEEEEE-SSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecccEEEEEEeecc---cceEEEEEECCHHHHHHHHHHHHH
Confidence            7899999999999999999999988  99999999999999999999998722   247899999999999999999999


Q ss_pred             cccccccccccc
Q psy10562        108 NHGFFRCSAVKN  119 (135)
Q Consensus       108 ~H~Ff~~~~~~~  119 (135)
                      ||+||++.++++
T Consensus        78 ~H~Ff~~~~~~~   89 (90)
T PF09380_consen   78 QHTFFRLRRPPK   89 (90)
T ss_dssp             HHHHHHHHTS-E
T ss_pred             HHHHhcccCCCC
Confidence            999999977653

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....

>KOG0792|consensus

Probab=99.96  E-value=1.2e-29  Score=222.21  Aligned_cols=135  Identities=35%  Similarity=0.502  Sum_probs=119.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEee-CCceeeeeecccccceeeeccEEEEEEecC
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQ-NQTKINTFSWAKIRKISFKRKRFLIKLHPE   79 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~-~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~   79 (135)
                      |++|+|||++||++|++||+||+|+|++||..|++|.|||+..||.|+. ++.+...|+|.+|.+++|+++.|.|++++.
T Consensus       198 G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~di~~is~~ks~~~le~~~~  277 (1144)
T KOG0792|consen  198 GLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGDIIKISFKKSTFGLEQRNK  277 (1144)
T ss_pred             ccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccccceechhhhhhhhcchhhhhhhhhhc
Confidence            7899999999999999999999999999999999999999999999996 677789999999999999999999999988


Q ss_pred             CCCcceeeEEEEecChHHHHHHHHHHhhccccccccccccCCc-----ccceeeecCccCC
Q psy10562         80 GYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPR-----QRTRVLSRGSSFR  135 (135)
Q Consensus        80 ~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~-----~~~~~~~~g~~~r  135 (135)
                      +++..+..+.|.+.+.+.||+||++|++||.||++..+...|.     .+...++++|.+|
T Consensus       278 ~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~Ffr~~~~~~lp~~~~~~~~~~~~~~ss~~~  338 (1144)
T KOG0792|consen  278 DSESRETLLGFNMLDARTAKYLWKLCVEHHKFFRLKKPCVLPSSSKSPIRRVQSSRSSLPE  338 (1144)
T ss_pred             cccchhhhheeeecccchhHHHHHHHHHHhhHhhccccccCCcccCCCccccccccccccc
Confidence            8766667789999999999999999999999999987743332     1112566666654

>KOG3531|consensus

Probab=99.87  E-value=2.3e-24  Score=185.72  Aligned_cols=134  Identities=63%  Similarity=1.151  Sum_probs=127.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG   80 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~   80 (135)
                      |++|+|+.++-|..|.++++||+++|+++|-+|..+-+.+...||.|+++-.++..|.|.+|.+++|++|.|.|.+++..
T Consensus       205 g~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~  284 (1036)
T KOG3531|consen  205 GQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDS  284 (1036)
T ss_pred             ccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhheecccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCcceeeEEEEecChHHHHHHHHHHhhccccccccccccCCcccceeeecCccCC
Q psy10562         81 YGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR  135 (135)
Q Consensus        81 ~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~~~~~~~~~g~~~r  135 (135)
                      .++.+.++.|.+.+...||..|+-|+|+|.|||+...+.+ +.+..+|++||+||
T Consensus       285 ~g~~qdt~ef~~~~rd~ck~fwk~cve~h~ffr~~~~~~~-k~k~~~~S~gssfr  338 (1036)
T KOG3531|consen  285 YGYYKDTLEFLMASRDECKNFWKICVEHHAFFRLVEEPKP-KPKTVFFSKGSSFR  338 (1036)
T ss_pred             ccchhhhHHHHHHhHHHHHHHHhccccccchhhhhcccCC-CCCceeecccchhh
Confidence            7777789999999999999999999999999999887776 76778999999998

>KOG3529|consensus

Probab=99.74  E-value=6.1e-19  Score=150.65  Aligned_cols=114  Identities=27%  Similarity=0.431  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCcee---eeeecccccceeeeccEEEEEEe
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI---NTFSWAKIRKISFKRKRFLIKLH   77 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~---~~f~W~~I~~l~f~~k~F~I~~~   77 (135)
                      ||+.++|+++||++|+.||+|||++|+++++.|+++||||+..|+.+|...+++   -.|+|++|.+|+|.+|+|.|.+.
T Consensus       190 ~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf~~k~i  269 (596)
T KOG3529|consen  190 GMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKFHIKPI  269 (596)
T ss_pred             hhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCCCCCCCCCccccCCCCCCcccccCCCC
Confidence            789999999999999999999999999999999999999999999999776653   58999999999999999999998


Q ss_pred             cCCCCcceeeEEEEecChHHHHHHHHHHhhccccccccccc
Q psy10562         78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVK  118 (135)
Q Consensus        78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~  118 (135)
                      +...    ..+.|+-+.....+.+.+.|.+.|..|+.+..+
T Consensus       270 d~~~----~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr~~~  306 (596)
T KOG3529|consen  270 DKKA----SDFSFYAPRLRINKRILDLCMGNHELYMRRRKP  306 (596)
T ss_pred             Cccc----Ccccccccccccchhhhhhhhccchhhhhcccc
Confidence            7642    467777788889999999999999999876554

>KOG4371|consensus

Probab=99.02  E-value=1.3e-10  Score=103.40  Aligned_cols=112  Identities=18%  Similarity=0.321  Sum_probs=98.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEee-ec----------CCCCeEEEEEeCCeeEEeeCCc----eeeeeecccccce
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPA-KD----------HDNILLNLSVAHMGILVFQNQT----KINTFSWAKIRKI   65 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~v-kd----------~~~~~~~lGvs~~GI~iy~~~~----~~~~f~W~~I~~l   65 (135)
                      |.+..||...|+++++.+++|+++++++ ++          ..+.+.++|++++||.||.+..    ++..|||..|..+
T Consensus       693 ~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~~l  772 (1332)
T KOG4371|consen  693 GTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQTL  772 (1332)
T ss_pred             hcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCCCCCCce
Confidence            3567899999999999999999999987 33          3577899999999999996643    4679999999999


Q ss_pred             eeeccEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhcccccccc
Q psy10562         66 SFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCS  115 (135)
Q Consensus        66 ~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~  115 (135)
                      .|.+++|.|...+.++   ...+.|+++.+..+.++++++..+|.||+..
T Consensus       773 qFd~k~f~Is~~g~p~---~~i~~~yt~hh~~S~~~L~~~~~thR~ym~~  819 (1332)
T KOG4371|consen  773 QFDKKRFVISAVGAPD---EQIETFYTDHHSKSSYFLRFAASTHRWYMKM  819 (1332)
T ss_pred             eecCCCceeecCCCCC---cceEEeeccCCcchhHHHHHHHHhhHHHhhc
Confidence            9999999999887765   3567899999999999999999999999876

>KOG0248|consensus

Probab=97.05  E-value=0.00064  Score=59.58  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=86.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeec-----CCCCeEEEEEeCCeeEEeeCC-c-eeeeeecccccceeeeccEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQ-T-KINTFSWAKIRKISFKRKRFL   73 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd-----~~~~~~~lGvs~~GI~iy~~~-~-~~~~f~W~~I~~l~f~~k~F~   73 (135)
                      |||+.|...-||..|++-|.+|..+|.|+-     +.+.=+||+|.-.|+.+...+ . -+..|+++.+...-=-...|-
T Consensus       777 G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~M~vi~tYpYsSl~TFGG~qDDFM  856 (936)
T KOG0248|consen  777 GMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNHMDVIRTYPYSSLSTFGGFQDDFM  856 (936)
T ss_pred             CCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccceeEEEEeeccccccccCcccceE
Confidence            899999999999999999999999998863     467889999999999997433 3 467899999998877777898


Q ss_pred             EEEecCCCC----cceeeEEEEecChHHHHHHHHHHh
Q psy10562         74 IKLHPEGYG----YYKDIVEFLFDNRNDCKNFWKKCV  106 (135)
Q Consensus        74 I~~~~~~~~----~~~~~~~f~~~s~~~ak~lw~~~v  106 (135)
                      ++++..++.    ...+++.|.|.-++.+...+-++.
T Consensus       857 lVI~~tp~K~~~~~~~EKL~F~MAkPKI~E~Tl~~AS  893 (936)
T KOG0248|consen  857 LVIIRTPGKHPDEAPKEKLTFSMAKPKIEELTLHLAS  893 (936)
T ss_pred             EEEecCCCCCCCccchhhhhhhhccchHHHHHHHHHH
Confidence            888765442    235678899999888777666653

>KOG3727|consensus

Probab=96.21  E-value=0.011  Score=50.99  Aligned_cols=97  Identities=15%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHhhccCCccceeEeee-cCCCCeEEEEEeCCeeEEe--eCCceeeeeeccccc--ceeeeccEEEEEE
Q psy10562          2 QSPAAADLNLLETARRCELYGVKLHPAK-DHDNILLNLSVAHMGILVF--QNQTKINTFSWAKIR--KISFKRKRFLIKL   76 (135)
Q Consensus         2 ~s~~eAe~~fL~~a~~L~~YGv~~~~vk-d~~~~~~~lGvs~~GI~iy--~~~~~~~~f~W~~I~--~l~f~~k~F~I~~   76 (135)
                      |+-.||.+.||+.=|.||.+|+.+|=|+ +..-.+=.|||..+-+.=.  ..+..+..++++++.  |+...=|...|+.
T Consensus       533 lsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNWeir~v~IeF  612 (664)
T KOG3727|consen  533 LSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNWEIRQVMIEF  612 (664)
T ss_pred             hhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheeeeecccCCceeeeeecchhhhcccceeeEEEEEe
Confidence            6889999999999999999999999885 2233344588887655543  334456666666666  4566666777777


Q ss_pred             ecCCCCcceeeEEEEecChHHHHHHHHHH
Q psy10562         77 HPEGYGYYKDIVEFLFDNRNDCKNFWKKC  105 (135)
Q Consensus        77 ~~~~~~~~~~~~~f~~~s~~~ak~lw~~~  105 (135)
                      .+.      ..+.|.|-|. .||-+-..+
T Consensus       613 ~de------v~iaFsc~SA-DCKVVHEfI  634 (664)
T KOG3727|consen  613 EDE------VNIAFSCLSA-DCKVVHEFI  634 (664)
T ss_pred             ccc------ceEEEEeecc-cchhhhhhc
Confidence            653      4578988887 576664433

>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin

Probab=94.23  E-value=0.92  Score=34.27  Aligned_cols=93  Identities=15%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCce--eeeeecccccc-eeeeccE------EEEEEe
Q psy10562          7 ADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTK--INTFSWAKIRK-ISFKRKR------FLIKLH   77 (135)
Q Consensus         7 Ae~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~-l~f~~k~------F~I~~~   77 (135)
                      -.+++|+.||+.   |--++-   ....++.++|+-.||-|-..+++  ..++|--.|.. ++|.+--      |.+++.
T Consensus        87 ~lI~~ID~aQq~---GkLP~v---~~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~~  160 (200)
T PF10480_consen   87 ELINYIDSAQQD---GKLPFV---PSDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAGKNLLALKVG  160 (200)
T ss_pred             HHHHHHHHHhhc---CcCCCC---CCCCeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCcceEEEEEcc
Confidence            346788888864   555553   23358889999999999866554  47889889984 5565442      233433


Q ss_pred             cCCCCcceeeEEEEecChHHHHHHHHHHh
Q psy10562         78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCV  106 (135)
Q Consensus        78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~v  106 (135)
                      +...+ .-..+.|.|.+...|.-|.++..
T Consensus       161 ~~~~e-~y~l~v~Qcss~~qA~~ICk~l~  188 (200)
T PF10480_consen  161 DERQE-EYQLWVYQCSSDEQAQEICKVLG  188 (200)
T ss_pred             CCCcc-eEEEEEEEcCCHHHHHHHHHHHH
Confidence            33221 12567899999999999888754

The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].

>KOG3527|consensus

Probab=91.60  E-value=0.079  Score=47.85  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEee-ec--CCCCeEEEEE-eCCeeEEeeCCceeeeeecccccceeeeccEEEEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPA-KD--HDNILLNLSV-AHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKL   76 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~v-kd--~~~~~~~lGv-s~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~   76 (135)
                      |.+.+++|-.+..-+....+||.+.+.. .|  ..+.++..+- ...+|-+|+.......+.|..|.+.++..-.|.+.+
T Consensus       554 s~s~setee~~~~r~~~k~~~Gi~~~~~e~~~~k~~~~~d~~~~~ee~ipeaEpv~~t~s~v~~ni~~ksy~~~~l~~dv  633 (975)
T KOG3527|consen  554 SQSESETEEQFRDRCKHKALYGIHLFEAESDKDKEPEPVDRAEVGEEDIPEAEPVQKTHSFVWQNIITKSYREGYLSIDV  633 (975)
T ss_pred             cccccchhhhhhcccccccccccchhhhhcccccCcccccchhcccccccccceeccccccccccccccccccccceecc
Confidence            4577899999999999999999999865 22  3333333111 188999999888889999999999999999999998


Q ss_pred             ecCCCCcceeeEEEEecChHHHHHHHHHHhhcccccccccc
Q psy10562         77 HPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAV  117 (135)
Q Consensus        77 ~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~  117 (135)
                      .....+..+..+.+.-+-.-..+.-|++...+|+|+...++
T Consensus       634 ~~~AvEk~e~p~v~te~v~v~~e~~~k~~~~~~t~~pi~qt  674 (975)
T KOG3527|consen  634 KAGAVEKNEKPLVKTEPVTVLDERNAKSAEIHTTFVPIVQT  674 (975)
T ss_pred             Ccchhhcccccceeccceehhhhcccccccccccccccccc
Confidence            74333222234555566677888899999999999987554

>KOG4261|consensus

Probab=89.42  E-value=0.13  Score=46.14  Aligned_cols=43  Identities=26%  Similarity=0.334  Sum_probs=37.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecC-----CCCeEEEEEeCC
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDH-----DNILLNLSVAHM   43 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~-----~~~~~~lGvs~~   43 (135)
                      ||+.-+|...|.+.|..|++|||.+|-||.+     .+.+-+|||+-.
T Consensus       286 ~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~  333 (1003)
T KOG4261|consen  286 GMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKE  333 (1003)
T ss_pred             chhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHH
Confidence            5788899999999999999999999999864     467888888764

>KOG3531|consensus

Probab=88.06  E-value=0.19  Score=45.52  Aligned_cols=73  Identities=3%  Similarity=-0.271  Sum_probs=66.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLI   74 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I   74 (135)
                      |+.+.+||.+-++++.+-+.||.++|+.++-++....+..-+.|+.. .+-.+++-+.|.++.++.++++-+..
T Consensus       346 q~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~~~~~-~sl~~~n~~~~~~~~~~~~ss~P~l~  418 (1036)
T KOG3531|consen  346 QLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPEQHRN-GSLYEANGTDSYNKHQNVHSSEPHIA  418 (1036)
T ss_pred             ccchhhhhcccccchhhcccccccccchhhccCCchhhhhccccccc-cceeecccccCcccccccccCCceec
Confidence            57899999999999999999999999999999998889999999998 44456789999999999999998776

>PF14317 YcxB: YcxB-like protein

Probab=87.01  E-value=1.8  Score=25.25  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             eCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecC
Q psy10562         41 AHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPE   79 (135)
Q Consensus        41 s~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~   79 (135)
                      ...||.+..+. ....++|++|.++.-.+..|.|.+.+.
T Consensus         2 ~~~gi~~~~~~-~~~~~~w~~i~~v~e~~~~~~l~~~~~   39 (62)
T PF14317_consen    2 DEDGIIIESGN-GSSRIPWSDIKKVVETKDYFYLYLGKN   39 (62)
T ss_pred             CCCEEEEEECC-eEEEEEchheEEEEEeCCEEEEEECCC
Confidence            46788886533 446899999999999999999987543

>KOG3784|consensus

Probab=85.92  E-value=1.6  Score=36.47  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhccCCccceeEee--ec--CCCCeEEEEEeCCeeEEe--eCCc--eeeeeecccccc
Q psy10562          7 ADLNLLETARRCELYGVKLHPA--KD--HDNILLNLSVAHMGILVF--QNQT--KINTFSWAKIRK   64 (135)
Q Consensus         7 Ae~~fL~~a~~L~~YGv~~~~v--kd--~~~~~~~lGvs~~GI~iy--~~~~--~~~~f~W~~I~~   64 (135)
                      -...||+.|++|++||...|+-  =|  +.|.++.+-++.+=+..-  .++.  ....|.|++|..
T Consensus       246 ~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i~F~~trmr~  311 (407)
T KOG3784|consen  246 SMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEIAFRWTRMRC  311 (407)
T ss_pred             hHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCccceeEEEeeeeEe
Confidence            3468999999999999999974  34  578899888888888774  3332  456899999874

>PF14470 bPH_3: Bacterial PH domain

Probab=84.89  E-value=7.9  Score=24.71  Aligned_cols=67  Identities=15%  Similarity=0.313  Sum_probs=47.8

Q ss_pred             CCCeEEEEEeCCeeEEeeCC----ceeeeeecccccceeeec----cEEEEEEecCCCCcceeeEEEEecChHHHHHHHH
Q psy10562         32 DNILLNLSVAHMGILVFQNQ----TKINTFSWAKIRKISFKR----KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWK  103 (135)
Q Consensus        32 ~~~~~~lGvs~~GI~iy~~~----~~~~~f~W~~I~~l~f~~----k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~  103 (135)
                      ......+.++.+=|.++...    .....++|.+|..+++++    .++.|.. +.      ..+.+..-+...++.+.+
T Consensus        20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~-~~------~~~~i~~i~k~~~~~~~~   92 (96)
T PF14470_consen   20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET-NG------EKIKIDNIQKGDVKEFYE   92 (96)
T ss_pred             cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE-CC------EEEEEEEcCHHHHHHHHH
Confidence            46677788999988888554    235899999999999997    5556665 21      466666556667777665


Q ss_pred             HH
Q psy10562        104 KC  105 (135)
Q Consensus       104 ~~  105 (135)
                      ..
T Consensus        93 ~i   94 (96)
T PF14470_consen   93 YI   94 (96)
T ss_pred             HH
Confidence            54

>cd00934 PTB Phosphotyrosine-binding (PTB) domain

Probab=81.80  E-value=13  Score=24.76  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             CCCCeEEEEEeCCeeEEeeCCc--eeeeeecccccceeee---ccEEEEEEecCCCCcceeeEEEEecChHHHHHHHH
Q psy10562         31 HDNILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFK---RKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWK  103 (135)
Q Consensus        31 ~~~~~~~lGvs~~GI~iy~~~~--~~~~f~W~~I~~l~f~---~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~  103 (135)
                      ..+.++.|-|++.||.+.....  .+..|+..+|.-..-.   .+-|.+.++..... .-.-..|.|.+.  |+.|-.
T Consensus        39 ~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~-~~~CHvF~c~~~--a~~i~~  113 (123)
T cd00934          39 EKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSS-RFECHVFKCEKV--AEPIAL  113 (123)
T ss_pred             cCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCC-cEEEEEEEeCch--HHHHHH
Confidence            5678999999999999986554  3566776666655554   56788777765431 123556888776  554433

Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
3bin_A	283	Structure Of The Dal-1 And Tslc1 (372-383) Complex		2e-16
2he7_A	283	Ferm Domain Of Epb41l3 (Dal-1) Length = 283		2e-16
3qij_A	296	Primitive-Monoclinic Crystal Structure Of The Ferm		7e-16
1gg3_A	279	Crystal Structure Of The Protein 4.1r Membrane Bind		8e-16

>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex Length = 283

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           G +PA A+++ LE A++  +YGV LH AKD + + + L V   G+L+++++ +IN F+W 
Sbjct: 169 GMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWP 228
Query: 61  XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
                          + P  +  ++  + F   N    K  WK CVE+H FFR
Sbjct: 229 KVLKISYKRNNFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFR 281

>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1) Length = 283

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
           G +PA A+++ LE A++  +YGV LH AKD + + + L V   G+L+++++ +IN F+W 
Sbjct: 169 GMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWP 228
Query: 61  XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
                          + P  +  ++  + F   N    K  WK CVE+H FFR
Sbjct: 229 KVLKISYKRNNFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFR 281

>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain Of Protein 4.1r Length = 296

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%)
Query: 3   SPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAXX 62
           +PA ADL  LE A++  +YGV LH AKD + + + L V   G+LV++++ +IN F W   
Sbjct: 186 TPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKV 245
Query: 63  XXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
                        + P     Y+  + F   +    K  WK CVE+H FFR
Sbjct: 246 LKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296

>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding Domain Length = 279

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%)
Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             +PA ADL  LE A++  +YGV LH AKD + + + L V   G+LV++++ +IN F W 
Sbjct: 167 SMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWP 226
Query: 61  XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
                          + P     Y+  + F   +    K  WK CVE+H FFR
Sbjct: 227 KVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 279

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	1e-41
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	1e-34
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	4e-33
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	1e-30
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	9e-26
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	3e-25
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	4e-24
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	1e-06

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296

 Score =  138 bits (350), Expect = 1e-41
 Identities = 47/113 (41%), Positives = 67/113 (59%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
             +PA ADL  LE A++  +YGV LH AKD + + + L V   G+LV++++ +IN F W 
Sbjct: 184 SMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWP 243

Query: 61  KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
           K+ KIS+KR  F IK+ P     Y+  + F   +    K  WK CVE+H FFR
Sbjct: 244 KVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314

 Score =  120 bits (303), Expect = 1e-34
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TF 57
           G++   A++  L+ A+  E+YGV     ++     L L V  +G+ ++  + ++    +F
Sbjct: 198 GRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISF 257

Query: 58  SWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
            W +IR IS+  K F IK          D+ +F        K   + C+ NH  F 
Sbjct: 258 PWNEIRNISYSDKEFTIKPLD----KKIDVFKFNSSKLRVNKLILQLCIGNHDLFM 309

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294

 Score =  116 bits (292), Expect = 4e-33
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TF 57
           G     A L  L+ A+  E+YGV     K+     L L V  +G+ +++   ++     F
Sbjct: 178 GMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGF 237

Query: 58  SWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
            W++IR ISF  K+F+IK              F        K     C+ NH  + 
Sbjct: 238 PWSEIRNISFNDKKFVIKPI----DKKAPDFVFYAPRLRINKRILALCMGNHELYM 289

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score =  113 bits (284), Expect = 1e-30
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINT---F 57
           G     A +  L+ A+  E+YGV     ++  N  L L V  +G+ +++   K+     F
Sbjct: 181 GMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGF 240

Query: 58  SWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAV 117
            W++IR ISF  ++F+IK   +          F        K     C+ NH  +     
Sbjct: 241 PWSEIRNISFNDRKFIIKPIDK----KAPDFVFFAPRVRVNKRILALCMGNHELYMRRR- 295

Query: 118 KNTPRQRTRVLSRGSSFR 135
           K       ++ ++    +
Sbjct: 296 KPDTIDVQQMKAQAREEK 313

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222

 Score = 96.1 bits (239), Expect = 9e-26
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQTK-- 53
             S   A +  ++ AR  + YGV     K+     +  +   L +    ++    +TK  
Sbjct: 105 QMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEV 164

Query: 54  INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
           I  +S   I++ +   K F +       GY      +      + +   +         
Sbjct: 165 IQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQTT-EGEQIAQLIAGYIDII 216

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371

 Score = 97.3 bits (242), Expect = 3e-25
 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKDHD-----NILLNLSVAHMGILVFQNQTK-- 53
             S   A +  ++ AR  + YGV     K+        +   L +    ++    +TK  
Sbjct: 259 QMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEV 318

Query: 54  INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
           I  +S   I++ +   K F +       GY      +      + +   +         
Sbjct: 319 IQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQTT-EGEQIAQLIAGYIDII 370

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206

 Score = 91.5 bits (227), Expect = 4e-24
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQTK-- 53
             S   A +  ++ AR  + YGV     K+     +  +   L +    ++    +TK  
Sbjct: 94  NMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEV 153

Query: 54  INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
           I  +S   I++ +   K F +       GY      +      + +   +         
Sbjct: 154 IQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQTT-EGEQIAQLIAGYIDII 205

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 19/98 (19%)

Query: 1   GQSPAAADLNLLETARRCELYGVKLHPA--------KDHDNILLNLSVAHMGILVFQNQT 52
            +         L+       YG               +H  I + + V   G+ +   +T
Sbjct: 201 SKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMET 260

Query: 53  K-------INTFSWAKIRKISFKRKRFLIKLHPEGYGY 83
           K          F W    ++      F I        +
Sbjct: 261 KALLISLKYGCFMW----QLGDTDTCFQIHSMENKMSF 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	100.0
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	99.97
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	99.96
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	99.95
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	99.85
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	99.77
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	99.71
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	99.67
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	99.61
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	99.6
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	99.6
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	99.35
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.79
4dx8_A	154	Integrin beta-1-binding protein 1; protein-protien	93.53

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=100.00  E-value=4.1e-35  Score=230.95  Aligned_cols=113  Identities=42%  Similarity=0.811  Sum_probs=103.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG   80 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~   80 (135)
                      |||++||+++||+.|++||+||+++|+|||..|.+++|||++.||.||++..++..|+|++|.+++|++|+|.|++.+.+
T Consensus       184 g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi~v~~~~~kl~~f~w~~I~~~s~~~k~F~i~~~~~~  263 (296)
T 3qij_A          184 SMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGE  263 (296)
T ss_dssp             SCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEEEEEETTEEEEEEEGGGEEEEEEETTEEEEEEC---
T ss_pred             CCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeEEEEeCCCeEEEEEhhhcCEEEecCCEEEEEEecCc
Confidence            89999999999999999999999999999999999999999999999999989999999999999999999999998765


Q ss_pred             CCcceeeEEEEecChHHHHHHHHHHhhcccccc
Q psy10562         81 YGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR  113 (135)
Q Consensus        81 ~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~  113 (135)
                      .+..+.++.|+++++++||+||++|+|||+|||
T Consensus       264 ~~~~~~~~~f~~~~~~~~k~l~~~c~~~h~ffr  296 (296)
T 3qij_A          264 QEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR  296 (296)
T ss_dssp             ----CEEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCccceEEEECCCHHHHHHHHHHHHHhccccC
Confidence            444467999999999999999999999999997

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=99.97  E-value=3.2e-30  Score=201.59  Aligned_cols=112  Identities=27%  Similarity=0.443  Sum_probs=103.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCcee---eeeecccccceeeeccEEEEEEe
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI---NTFSWAKIRKISFKRKRFLIKLH   77 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~---~~f~W~~I~~l~f~~k~F~I~~~   77 (135)
                      |||+++|+.+||+.|++||+||+++|+|+|++|.+++|||++.||.||+++.++   ..|+|++|.+++|++++|.|++.
T Consensus       178 g~s~~~A~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~Lgv~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~~~~~f~i~~~  257 (294)
T 1ef1_A          178 GMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPI  257 (294)
T ss_dssp             TCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEEETTEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEES
T ss_pred             CCCHHHHHHHHHHHHcccCccCceEEeeecCCCCEEEEEEecCcEEEEeCCCccccceEEEcccceEeeecCCEEEEEEc
Confidence            899999999999999999999999999999999999999999999999877653   69999999999999999999997


Q ss_pred             cCCCCcceeeEEEEecChHHHHHHHHHHhhccccccccc
Q psy10562         78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSA  116 (135)
Q Consensus        78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~  116 (135)
                      +..    +..+.|++++.+.||+||++|+++|+||+..+
T Consensus       258 ~~~----~~~~~f~~~~~~~~k~l~~l~~~~h~f~~~~r  292 (294)
T 1ef1_A          258 DKK----APDFVFYAPRLRINKRILALCMGNHELYMRRR  292 (294)
T ss_dssp             SSS----SCCEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCc----cceEEEEeCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            542    35789999999999999999999999999754

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=99.96  E-value=1.7e-29  Score=199.38  Aligned_cols=112  Identities=26%  Similarity=0.494  Sum_probs=103.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCce---eeeeecccccceeeeccEEEEEEe
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTK---INTFSWAKIRKISFKRKRFLIKLH   77 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~---~~~f~W~~I~~l~f~~k~F~I~~~   77 (135)
                      |||+++|+++||+.|++||+||+++|+|+|++|.+++|||++.||.||++..+   ...|+|++|.+++|++++|.|++.
T Consensus       198 g~s~~eA~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~LgI~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~~~~~f~i~~~  277 (314)
T 1h4r_A          198 GRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPL  277 (314)
T ss_dssp             TCCHHHHHHHHHHHHTTSTTTTCEEEEEEETTCCEEEEEECSSEEEEECTTCSSSCSEEEEGGGEEEEEEETTEEEEEES
T ss_pred             CCCHHHHHHHHHHHHhccCccCceEEEeecCCCCEEEEEEeCCceEEEeCCCCcccceEEecccceEEEeeCCEEEEEEc
Confidence            89999999999999999999999999999999999999999999999987654   379999999999999999999998


Q ss_pred             cCCCCcceeeEEEEecChHHHHHHHHHHhhccccccccc
Q psy10562         78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSA  116 (135)
Q Consensus        78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~  116 (135)
                      +...    ..+.|++++.+.||+||++|+++|+||+..+
T Consensus       278 ~~~~----~~~~f~~~~~~~~k~i~~l~~~~h~f~~~~r  312 (314)
T 1h4r_A          278 DKKI----DVFKFNSSKLRVNKLILQLCIGNHDLFMRRR  312 (314)
T ss_dssp             STTS----CCEEEECCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCC----ceEEEEcCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            6542    4789999999999999999999999998753

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=99.95  E-value=5.7e-28  Score=205.03  Aligned_cols=115  Identities=25%  Similarity=0.435  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCce---eeeeecccccceeeeccEEEEEEe
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTK---INTFSWAKIRKISFKRKRFLIKLH   77 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~---~~~f~W~~I~~l~f~~k~F~I~~~   77 (135)
                      ||||++|+++||+.|++||+||+++|+|+|+.|++++|||++.||.||.++.+   ...|+|++|.+++|++++|.|.+.
T Consensus       181 G~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~GI~v~~~~~k~~~l~~f~w~~I~~isf~~k~F~I~~~  260 (575)
T 2i1j_A          181 GMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPI  260 (575)
T ss_dssp             TCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSSEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEES
T ss_pred             CCCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCCeeEEEeCCCCcccceEecHHHhhcccCCCCeEEEEEc
Confidence            89999999999999999999999999999999999999999999999987664   368999999999999999999997


Q ss_pred             cCCCCcceeeEEEEecChHHHHHHHHHHhhcccccccccccc
Q psy10562         78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKN  119 (135)
Q Consensus        78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~  119 (135)
                      +..    ...+.|++++.+.||+||++|+++|.||+....++
T Consensus       261 ~~~----~~~l~F~t~~~~~ak~i~~lc~~~H~ff~~~r~~d  298 (575)
T 2i1j_A          261 DKK----APDFVFFAPRVRVNKRILALCMGNHELYMRRRKPD  298 (575)
T ss_dssp             CTT----SCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cCC----cceeEEEeCCchhHHHHHHHHHHHHHHHHHccCCC
Confidence            642    35789999999999999999999999998765543

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=99.85  E-value=1.2e-20  Score=140.17  Aligned_cols=105  Identities=15%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCC-C----CeEEEEEeCCeeEEeeCCce--eeeeecccccceeeeccEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHD-N----ILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISFKRKRFL   73 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~-~----~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f~~k~F~   73 (135)
                      |||+++|+++||+.|++||+||+++|+|++.. |    .+++|||++.||.++.+..+  +..|+|++|.++++.+++|.
T Consensus        94 g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~~~I~~~~~~~~~f~  173 (206)
T 1mix_A           94 NMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFT  173 (206)
T ss_dssp             TCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEECSSEEE
T ss_pred             CCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeehhHeeecccCCCEEE
Confidence            89999999999999999999999999999875 5    79999999999999987665  46999999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEecChHHHHHHHHHHhhccccc
Q psy10562         74 IKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF  112 (135)
Q Consensus        74 I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff  112 (135)
                      |++.+...    ..  |.+.+. .|+.++.+|.+.|..+
T Consensus       174 i~~~~~~~----~~--~~~~t~-~~~~i~~Li~~Yi~~~  205 (206)
T 1mix_A          174 LDFGDYQD----GY--YSVQTT-EGEQIAQLIAGYIDII  205 (206)
T ss_dssp             EECGGGSS----SC--EEEECS-CHHHHHHHHHTTSCCC
T ss_pred             EEeCcccc----eE--EEEECC-cHHHHHHHHHHHHHHh
Confidence            99886532    23  444443 4899999999998764

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=99.77  E-value=2.8e-18  Score=129.47  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCC-C----CeEEEEEeCCeeEEeeCCce--eeeeecccccceeeeccEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHD-N----ILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISFKRKRFL   73 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~-~----~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f~~k~F~   73 (135)
                      |||++||+++||+.|++||+||+++|+|++.. |    .+++|||++.||.||.+..+  +..|+|++|.++++.+++|.
T Consensus       105 g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~~~I~~~~~~~~~f~  184 (222)
T 4f7g_A          105 QMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFT  184 (222)
T ss_dssp             TCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEGGGCCEEEECSSEEE
T ss_pred             CCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccHHHeeeeccCCCEEE
Confidence            89999999999999999999999999998764 3    58999999999999987654  57899999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEecChHHHHHHHHHHhhccccccc
Q psy10562         74 IKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRC  114 (135)
Q Consensus        74 I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~  114 (135)
                      |++.+...    ..+.|.++   .|+.+-.++..++..+..
T Consensus       185 I~~~~~~~----~~~~~~T~---q~~~I~~Li~~Yi~~~~~  218 (222)
T 4f7g_A          185 LDFGDYQD----GYYSVQTT---EGEQIAQLIAGYIDIILK  218 (222)
T ss_dssp             EECCTTSS----SCEEEECS---CHHHHHHHHHHHHHHTC-
T ss_pred             EEECCccc----eEEEEECC---cHHHHHHHHHHHHHHHHH
Confidence            99865422    23444443   467788888877765543

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=99.71  E-value=8.2e-17  Score=138.36  Aligned_cols=102  Identities=16%  Similarity=0.190  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHh-hccCCccceeEeeecCCC-----CeEEEEEeCCeeEEeeCCce-eeeeecccccceeeec----
Q psy10562          1 GQSPAAADLNLLETA-RRCELYGVKLHPAKDHDN-----ILLNLSVAHMGILVFQNQTK-INTFSWAKIRKISFKR----   69 (135)
Q Consensus         1 G~s~~eAe~~fL~~a-~~L~~YGv~~~~vkd~~~-----~~~~lGvs~~GI~iy~~~~~-~~~f~W~~I~~l~f~~----   69 (135)
                      |||+++|+++||+.| ++||+||+++|+|++..|     ++++|||+..||.||+...+ +..|+|++|.++++++    
T Consensus       454 g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV~v~d~~~k~ll~f~~~eI~~is~~~~~~~  533 (655)
T 3pvl_A          454 RTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELSFPEIMAVSSSRGTKM  533 (655)
T ss_dssp             SSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEEEEECTTCCEEEEEEGGGEEEEEEECCCSS
T ss_pred             CCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCceEEEcCCCceEEEechhHceEEeccCcccc
Confidence            799999999999999 899999999999998777     68999999999999988766 3589999999999998    


Q ss_pred             --cEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhc
Q psy10562         70 --KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVEN  108 (135)
Q Consensus        70 --k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~  108 (135)
                        ++|+|...+.      ..+.|.+++.+.++.|++.+++-
T Consensus       534 ~~~~ftl~~~~~------~~~~F~T~~a~~I~~LI~~yi~~  568 (655)
T 3pvl_A          534 MAPSFTLATIKG------DEYTFTSSNAEDIRDLVVTFLEG  568 (655)
T ss_dssp             SCCEEEEEETTS------CEEEEECTTHHHHHHHHHHHHHH
T ss_pred             cccEEEEEeccC------ceEEEEcCCHHHHHHHHHHHHHH
Confidence              7999986432      46889999999999999998875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=99.67  E-value=6.4e-16  Score=124.30  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCC-C----CeEEEEEeCCeeEEeeCCce--eeeeecccccceeeeccEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHD-N----ILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISFKRKRFL   73 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~-~----~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f~~k~F~   73 (135)
                      |||+++|+.+||+.|++||+||+++|+|++.. |    .+++|||++.||.||.+..+  +..|+|++|.++++.++.|.
T Consensus       259 g~s~~eA~~~yL~~~~~l~~yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~f~  338 (371)
T 3ivf_A          259 QMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFT  338 (371)
T ss_dssp             TCCHHHHHHHHHHHHHHSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHhcccccCcEEEEEEEeccCCCCCccEEEEEcCCcEEEEcCCCCceEEeeehhheeeeecCCCEEE
Confidence            89999999999999999999999999998653 3    37999999999999987654  47899999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEecChHHHHHHHHHHhhccc
Q psy10562         74 IKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHG  110 (135)
Q Consensus        74 I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~  110 (135)
                      |.+.+..    ...+.|.++.   |..+-+++.+++.
T Consensus       339 I~~~~~~----~~~~~~~T~~---~~~I~~Li~~Yi~  368 (371)
T 3ivf_A          339 LDFGDYQ----DGYYSVQTTE---GEQIAQLIAGYID  368 (371)
T ss_dssp             EECGGGS----SSCEEEECSC---HHHHHHHHHHHHH
T ss_pred             EEECCcc----CcEEEEECCh---HHHHHHHHHHHHH
Confidence            9997543    1355555544   4556666655543

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=99.61  E-value=5.6e-15  Score=124.34  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCC---CeEEEEEeCCeeEEeeCCce--eeeeeccccccee-eeccEEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDN---ILLNLSVAHMGILVFQNQTK--INTFSWAKIRKIS-FKRKRFLI   74 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~---~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~-f~~k~F~I   74 (135)
                      |||++||+.+||+.|++||+||+++|+|++++|   .+++|||+..||.||.+..+  +..|+|++|.+++ +.++.|.|
T Consensus       430 g~s~~eA~~~yL~~~~~lp~yG~~~F~v~~~~~~~~~~l~LgV~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~~f~i  509 (555)
T 3au4_A          430 GMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKI  509 (555)
T ss_dssp             TCCHHHHHHHHHHHHTTSTTTTCEEEEEEEEESSSCSEEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEEETTEEEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCceEEEEEecCCCCCceEEEEEcccceEEECCCCCeeEEEEEhhheeeecCCCCCEEEE
Confidence            799999999999999999999999999998766   69999999999999987664  4689999999998 57889999


Q ss_pred             EEecCCCCcceeeEEEEecChHHHHHHHHHHhh
Q psy10562         75 KLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVE  107 (135)
Q Consensus        75 ~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve  107 (135)
                      .+.+       ..+.|.++.......|+...++
T Consensus       510 ~~~~-------~~l~f~T~qa~~i~~LI~~Yi~  535 (555)
T 3au4_A          510 VVDE-------RELLFETSEVVDVAKLMKAYIS  535 (555)
T ss_dssp             EETT-------EEEEEECTTHHHHHHHHHHHHH
T ss_pred             EECC-------cEEEEECCCHHHHHHHHHHHHH
Confidence            8762       2477777666655555555544

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=99.60  E-value=5.3e-15  Score=117.08  Aligned_cols=102  Identities=15%  Similarity=0.120  Sum_probs=79.2

Q ss_pred             CCCHH--HHHHHHHHHhhccCCccceeEeeec--------CCCCeEEEEEeCCeeEEeeCCce--eeeeeccccc-ceee
Q psy10562          1 GQSPA--AADLNLLETARRCELYGVKLHPAKD--------HDNILLNLSVAHMGILVFQNQTK--INTFSWAKIR-KISF   67 (135)
Q Consensus         1 G~s~~--eAe~~fL~~a~~L~~YGv~~~~vkd--------~~~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~-~l~f   67 (135)
                      |||++  +|+++||+.|++||+||+++|.|+.        ..+.+++|||+..||.||....+  +..++|.+|. .+++
T Consensus       199 g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~~~~tk~~l~~~~~~~isw~~s~  278 (322)
T 4dxa_B          199 GVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFMWQLGD  278 (322)
T ss_dssp             CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC-------EEEEEEEECSSEEEEEETTTCCEEEEEETTSEEEEECS
T ss_pred             CCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCCCccCCCeEEEEEccCceEEEcCCCceeeeccccceeEEeecC
Confidence            78764  5799999999999999999999983        23469999999999999987654  4667877776 3447


Q ss_pred             eccEEEEEEecCCCCcceeeEEEEecCh-HHHHHHHHHHhh
Q psy10562         68 KRKRFLIKLHPEGYGYYKDIVEFLFDNR-NDCKNFWKKCVE  107 (135)
Q Consensus        68 ~~k~F~I~~~~~~~~~~~~~~~f~~~s~-~~ak~lw~~~ve  107 (135)
                      .++.|.|.+.+..     ..+.|.++.. +.|+.|-.+|-.
T Consensus       279 ~~~~f~i~~~~~~-----~~~~~~t~q~~~i~~li~~~~~~  314 (322)
T 4dxa_B          279 TDTCFQIHSMENK-----MSFIVHTKQAGLVVKLLMKLNGQ  314 (322)
T ss_dssp             STTEEEEEESSSC-----CEEEEECTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCC-----ccEEEEeCcHHHHHHHHHHHHHH
Confidence            8899999986542     3566777765 678777776643

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=99.60  E-value=7e-15  Score=118.76  Aligned_cols=108  Identities=7%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCC----CeEEEEEeCCeeEEeeCCc--eeeeeecccccceeee-----c
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDN----ILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFK-----R   69 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~----~~~~lGvs~~GI~iy~~~~--~~~~f~W~~I~~l~f~-----~   69 (135)
                      ||++.||+++||+.|++|++||+++|.|++..|    ..++||+. .||.++.+..  ....++|++|.++++.     .
T Consensus       203 g~s~~eAk~~yL~~~~~l~~yG~~~F~v~~~~~~~~~~~l~lg~~-~GI~~~~~~~~~~~~~~~f~~I~~i~~~~~~~~~  281 (375)
T 2al6_A          203 NLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPE-EGISYLTDKGANPTHLADFNQVQTIQYSNSEDKD  281 (375)
T ss_dssp             TCCHHHHHHHHHHHHTTTCCCSCEEEEEEECSSSCEEEEEEEETT-TEEEEESSTTSCEEEEECGGGEEEEEEECCSSSC
T ss_pred             CCCHHHHHHHHHHHHhhcccCCcEEEEEeecCCCCcceEEEEecC-CCEEEEeCCCCceEEEechhHccEEEEEeccccC
Confidence            799999999999999999999999999998765    56777775 4999996533  4578999999999763     2


Q ss_pred             --cEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhccccccc
Q psy10562         70 --KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRC  114 (135)
Q Consensus        70 --k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~  114 (135)
                        ..|.|.+.+.     ...+.|.|++.+.|+.+..++..++..+..
T Consensus       282 ~~~~~~I~v~~~-----~~~~~f~~~t~~~a~~i~~Li~gY~rl~~~  323 (375)
T 2al6_A          282 RKGMLQLKIAGA-----PEPLTVTAPSLTIAENMADLIDGYCRLVNG  323 (375)
T ss_dssp             CCEEEEEEETTC-----SSCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEECCC-----CCcEEEEeCCHHHHHHHHHHHhhheEEecC
Confidence              3566665543     257889999999999999999888777653

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=99.35  E-value=1.1e-11  Score=100.94  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCC--CeEEEEEeCCeeEEeeCCc--eeeeeecccccceeeec---cEEE
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDN--ILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFKR---KRFL   73 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~--~~~~lGvs~~GI~iy~~~~--~~~~f~W~~I~~l~f~~---k~F~   73 (135)
                      |+++.+|++.||+.+++|++||+++|+|++..|  .+..|.|++.||.+..+..  ....++|++|.+++...   ++..
T Consensus       223 ~ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~s~~~~~~~L~Vg~~GIs~~~~k~~~~~~~~~f~~I~~Is~~~~s~~~~~  302 (392)
T 4eku_A          223 SLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIRSIRCLPLEEGQAV  302 (392)
T ss_dssp             TCCHHHHHHHHHHHHTTSSCCSCEEEEEEEESSSCCCEEEEEETTEEEEECSSCSCCEEEECGGGBCCCCEEEETTTEEE
T ss_pred             CCCHHHHHHHHHHHHHhhhccCcEEEEEEeccCCcceeEEEEcCCcEEEECCCCCceeEEechHHceEEEEEeccCCceE
Confidence            789999999999999999999999999986433  5667777778999864433  45799999999998754   4556


Q ss_pred             EEEecCCCCcceeeEEEEecChHHHHHHHHHHhhcccccc
Q psy10562         74 IKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR  113 (135)
Q Consensus        74 I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~  113 (135)
                      +++.-.+.   ...+.|.|++.+.|+.++.++..+...+.
T Consensus       303 v~I~~~~~---~~~l~~~~~s~~~A~~~~~LidGY~RL~~  339 (392)
T 4eku_A          303 LQLGIEGA---PQALSIKTSSLAEAENMADLIDGYCRLQG  339 (392)
T ss_dssp             EEECBTTC---SSCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEECCC---CcceEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence            66554432   24788999999999999999877655443

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.79  E-value=7.9e-08  Score=82.09  Aligned_cols=102  Identities=8%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCe--EEEEEeCC-eeEEeeCCc--eeeeeecccccceeee----c--
Q psy10562          1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNIL--LNLSVAHM-GILVFQNQT--KINTFSWAKIRKISFK----R--   69 (135)
Q Consensus         1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~--~~lGvs~~-GI~iy~~~~--~~~~f~W~~I~~l~f~----~--   69 (135)
                      |+++.+|+++||+.++.|++||+|.|+|++..|..  +.|.|++. ||....+..  ......|++|..|.+.    +  
T Consensus       203 ~~~~~~~~lk~l~~l~~~~~yg~e~f~~~~~~g~~~~~~l~vg~~~GI~~~~~~~~~~~~~~~f~~I~~I~~~~~~~~~~  282 (656)
T 2j0j_A          203 NLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDR  282 (656)
T ss_dssp             TCCHHHHHHHHHHHHGGGCCTTSEEEEEEEESSSEEEEEEEEETTTEEEECCSSSSCCEEEECGGGEEEBCEEECSSSSC
T ss_pred             cCCHHHHHHHHHHHhccccccCceEEeeccCCCCcccEEEEECCCCCeEEECCCCCCceecccccceeEEEEeeccccCC
Confidence            58999999999999999999999999999988855  77788886 999874432  3468899999999776    2  


Q ss_pred             -cEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhh
Q psy10562         70 -KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVE  107 (135)
Q Consensus        70 -k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve  107 (135)
                       +.+.+.+...     ...+.+.+++...|..+-.+|-.
T Consensus       283 k~~~~~~~~~~-----~~~l~i~~~s~~~ae~~a~LidG  316 (656)
T 2j0j_A          283 KGMLQLKIAGA-----PEPLTVTAPSLTIAENMADLIDG  316 (656)
T ss_dssp             CEEEEEEESSC-----SSCEEEEESSHHHHHHHHHHHHH
T ss_pred             cceEEEEeccC-----CcceEEECCCchhhHHHHHhhcc
Confidence             3444444433     24678899999999998888754

>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A

Probab=93.53  E-value=1.4  Score=31.18  Aligned_cols=93  Identities=10%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCce--eeeeeccccc-ceeeeccE------EEEEE
Q psy10562          6 AADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTK--INTFSWAKIR-KISFKRKR------FLIKL   76 (135)
Q Consensus         6 eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~-~l~f~~k~------F~I~~   76 (135)
                      .-.++||+.||++..--   +...++   ++.++|+..||.|-..+.+  +.+.|=..|. -++|.+.-      |.++.
T Consensus        40 ~ell~~ID~aQq~gkLP---~~~~~E---dvi~svSkyGvkl~~~d~~dvl~RipL~~I~~~v~YdDg~g~g~~vla~KT  113 (154)
T 4dx8_A           40 LDLINYIDVAQQDGKLP---FVPPEE---EFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKT  113 (154)
T ss_dssp             HHHHHHHHHHHHTTSSC---SSCCSC---CEEEEEETTEEEEEETTSCCEEEEEEGGGEEEEEEEECCSSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHhCcCC---CCCCcC---eEEEEEeccCcEEEeccCcccccchhHHHhhhheeeccccccccEEEEEEe
Confidence            34678999999865432   223333   6999999999999854333  4789999999 78886554      34444


Q ss_pred             ecCCCCcceeeEEEEecChHHHHHHHHHH
Q psy10562         77 HPEGYGYYKDIVEFLFDNRNDCKNFWKKC  105 (135)
Q Consensus        77 ~~~~~~~~~~~~~f~~~s~~~ak~lw~~~  105 (135)
                      .+.... .-....|.|.+...|+.+.+..
T Consensus       114 ~~~~~~-~~~~hv~Qc~s~~~A~~iC~~l  141 (154)
T 4dx8_A          114 TDASNE-EYSLWVYQCNSLEQAQAICKVL  141 (154)
T ss_dssp             ECTTSC-CEEEEEEEESSHHHHHHHHHHH
T ss_pred             cCCCCc-eEEEEEEEcCCHHHHHHHHHHH
Confidence            433221 1245679999999888887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1gg3a2	92	b.55.1.5 (A:188-279) Erythroid membrane protein 4.	1e-34
d1ef1a2	99	b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens)	6e-32
d1h4ra2	99	b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens)	4e-31

>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 1e-34
 Identities = 38/92 (41%), Positives = 54/92 (58%)

Query: 22  GVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGY 81
           GV LH AKD + + + L V   G+LV++++ +IN F W K+ KIS+KR  F IK+ P   
Sbjct: 1   GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQ 60

Query: 82  GYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
             Y+  + F   +    K  WK CVE+H FFR
Sbjct: 61  EQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 92

>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (267), Expect = 6e-32
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 19  ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TFSWAKIRKISFKRKRFLIK 75
           E+YGV     K+     L L V  +G+ +++   ++     F W++IR ISF  K+F+IK
Sbjct: 1   EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIK 60

Query: 76  LHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
              +          F        K     C+ NH  + 
Sbjct: 61  PIDK----KAPDFVFYAPRLRINKRILALCMGNHELYM 94

>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (262), Expect = 4e-31
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 19  ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TFSWAKIRKISFKRKRFLIK 75
           E+YGV     ++     L L V  +G+ ++  + ++    +F W +IR IS+  K F IK
Sbjct: 1   EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIK 60

Query: 76  LHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
              +      D+ +F        K   + C+ NH  F 
Sbjct: 61  PLDK----KIDVFKFNSSKLRVNKLILQLCIGNHDLFM 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1ef1a2	99	Moesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1h4ra2	99	Merlin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gg3a2	92	Erythroid membrane protein 4.1R {Human (Homo sapie	100.0
d1mixa2	92	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	97.29

>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=201.26  Aligned_cols=93  Identities=27%  Similarity=0.487  Sum_probs=85.3

Q ss_pred             CCccceeEeeecCCCCeEEEEEeCCeeEEeeCCcee---eeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecCh
Q psy10562         19 ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI---NTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNR   95 (135)
Q Consensus        19 ~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~---~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~   95 (135)
                      |+||||+|+|+|++|++++||||++||.||+++.++   ..|+|++|.+|+|++|+|.|++.+..    +.+++|+++|+
T Consensus         1 e~YGv~~~~vkd~~~~~~~LGi~~~GI~iy~~~~~~~~~~~f~W~~I~klsf~~k~f~I~~~~~~----~~~~~f~~~s~   76 (99)
T d1ef1a2           1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKK----APDFVFYAPRL   76 (99)
T ss_dssp             TTTTCEEEEEECTTCCEEEEEEETTEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEESSSS----SCCEEEECSSH
T ss_pred             CCCCcEeEEEeCCCCCcEEEEEecCCeEEEeCCCeeccceEEechhEEEEEecCcEEEEEEeccC----CCeEEEEcCCh
Confidence            799999999999999999999999999999887654   58999999999999999999988653    35889999999


Q ss_pred             HHHHHHHHHHhhcccccccc
Q psy10562         96 NDCKNFWKKCVENHGFFRCS  115 (135)
Q Consensus        96 ~~ak~lw~~~ve~H~Ff~~~  115 (135)
                      ++||+||++|+|||+||+..
T Consensus        77 ~~~k~lw~~c~e~H~Ff~~~   96 (99)
T d1ef1a2          77 RINKRILALCMGNHELYMRR   96 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999653

>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=201.06  Aligned_cols=95  Identities=26%  Similarity=0.506  Sum_probs=87.1

Q ss_pred             CCccceeEeeecCCCCeEEEEEeCCeeEEeeCCcee---eeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecCh
Q psy10562         19 ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI---NTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNR   95 (135)
Q Consensus        19 ~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~---~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~   95 (135)
                      |+||||+|+|||++|++++||||++||.||+++.++   ..|+|++|.+|+|++|+|.|++.+..    ..+++|+++++
T Consensus         1 e~YGv~~~~vkd~~~~~~~LGi~~~GI~iy~~~~~~~~~~~f~W~~I~~lsf~~kkf~I~~~~~~----~~~~~F~~~~~   76 (99)
T d1h4ra2           1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKK----IDVFKFNSSKL   76 (99)
T ss_dssp             TTTTCEEEEEEETTCCEEEEEECSSEEEEECTTCSSSCSEEEEGGGEEEEEEETTEEEEEESSTT----SCCEEEECCCH
T ss_pred             CCCCcEeEEEcCCCCCcEEEEEecCCeEEEeCCCeecCceEEecccEEEEEecceEEEEEEcCCC----CceEEEEcCCH
Confidence            799999999999999999999999999999887765   48999999999999999999987653    35789999999


Q ss_pred             HHHHHHHHHHhhcccccccccc
Q psy10562         96 NDCKNFWKKCVENHGFFRCSAV  117 (135)
Q Consensus        96 ~~ak~lw~~~ve~H~Ff~~~~~  117 (135)
                      ++||+||++|+|||+|||..+.
T Consensus        77 ~~aK~lw~~c~e~H~Fy~~~r~   98 (99)
T d1h4ra2          77 RVNKLILQLCIGNHDLFMRRRK   98 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999997643

>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-36  Score=198.11  Aligned_cols=92  Identities=41%  Similarity=0.815  Sum_probs=87.7

Q ss_pred             cceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecChHHHHHH
Q psy10562         22 GVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNF  101 (135)
Q Consensus        22 Gv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~l  101 (135)
                      |||+|+|||++|++++|||++.||.||+++.+++.|+|++|.+|+|++|+|.|++.+.+.+..+.++.|+++++++||+|
T Consensus         1 Gv~~h~vkd~~g~~~~lGv~~~GI~vy~~~~~i~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~~~F~~~~~~~aK~l   80 (92)
T d1gg3a2           1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKL   80 (92)
T ss_dssp             TCEEEECCBTTTBCCEEEESSSEEEEESSSCCCEEEEGGGCCEEEEETTEEEEECCCSSSSSCCCEEEEECSSHHHHHHH
T ss_pred             CcccEEEECCCCCEEEEEEccCEEEEEECCCEEEEEehHHeEEEeecCCEEEEEEecCCCCccceEEEEEcCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999998876655667899999999999999


Q ss_pred             HHHHhhcccccc
Q psy10562        102 WKKCVENHGFFR  113 (135)
Q Consensus       102 w~~~ve~H~Ff~  113 (135)
                      |++|+|||+|||
T Consensus        81 wk~cve~H~FfR   92 (92)
T d1gg3a2          81 WKVCVEHHTFFR   92 (92)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHhhhhcC
Confidence            999999999997

>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.29  E-value=0.0015  Score=40.94  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             cceeEeeecC-----CCCeEEEEEeCCeeEEeeCCce--eeeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecC
Q psy10562         22 GVKLHPAKDH-----DNILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDN   94 (135)
Q Consensus        22 Gv~~~~vkd~-----~~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s   94 (135)
                      |..+|.||-.     ...+++|||+..||.++....+  +..+|...|.+-...+..|.+++-+...    ..+.|.++-
T Consensus         1 G~~fF~vk~~~~~~~~~~~~lLav~~~gv~lld~~t~~~l~~~py~~Ir~~g~~~~~F~~~~G~~~~----g~~~f~T~q   76 (92)
T d1mixa2           1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQD----GYYSVQTTE   76 (92)
T ss_dssp             TCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEECSSEEEEECGGGSS----SCEEEECSC
T ss_pred             CCceEEEEEEecCCCCCCCEEEEECcceEEEEcCCCCceEEEcchhheeeccCCCCEEEEEECCCcc----eEEEEEeCC
Confidence            6778988532     2467899999999999976553  6889999999999999999999854321    245566655


Q ss_pred             hHH
Q psy10562         95 RND   97 (135)
Q Consensus        95 ~~~   97 (135)
                      ...
T Consensus        77 ~~e   79 (92)
T d1mixa2          77 GEQ   79 (92)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443