Psyllid ID: psy10593

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----

MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWPFTEDSAEDKAKSNCEDSDDEMLNGNLNRRNNVMTEFSNRTKSGQFSTVIWYWYLRYIKHRCNKKFLELEIFYGHPKCEVEVITKSHQFITDDRTASTRVHGLFSLIRAEN

cccccccHHHHHHHHcccccccccccEEEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEcccEEEEEEccccccEEEEEEEEEcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccccccccccHHHccccccccccHHHHcccccccccccEEccccccccccEEEHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEcccEEEEccccccEEEEcEEEEEEccc

ccHHHHHHHHHHHHHcccccccccccEEEEEEEcccccEEEEEcccccEEEEEccHHHccEEEEEcccEEEEEcccccccEEEEEEEEEcHHHHHHHHHcccccHHHcccccccccccccccccccccccHHHHHHHcccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHccccccccccEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEccccEEEcccccccHHHHHHHHHHccc

MSKATKRKHVQKELLSqeyrvpedlNNIVKITQnsgnnlhqienhsgekyfvsmpgkfrnniwikpgdfvivkpieegnkVKAEIEQILDKKYISFLKQqlklppiengdiVHHFQEigeqqakpyrDLTLHLLNKEEGNKVKAEIEQILDKKYISFLkqqnswpftedsaedkaksncedsddemlngnlnrrnnvmtefsnrtksgqfsTVIWYWYLRYIKHRCNKKFLELEIfyghpkcevEVITKSHqfitddrtastrVHGLFSLIRAEN

mskatkrkhvqkellsqeyrvpedlNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWPFTEDSAEDKAKSNCEDSDDEMLNGNLNRRNNVMtefsnrtksgqfsTVIWYWYLRYIKHRCNKKFLELEIFYGHPKCEVEVITKSHqfitddrtastrVHGLFSLIRAEN

************************LNNIVKITQ****NLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQN*********************************************GQFSTVIWYWYLRYIKHRCNKKFLELEIFYGHPKCEVEVITKSHQFITDDRTASTRVHGLFSLI****

*******************RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIE***********************************************ISFLKQQ***************************GNLNRRNNVMTEFSNRTKSGQFSTVIWYWYLRYIKHRCNKKFLELEIFYGHPKCEVEVITKSHQFITDDRTASTRVHGLFSLIRA**

***********KELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSW******************DDEMLNGNLNRRNNVMTEFSNRTKSGQFSTVIWYWYLRYIKHRCNKKFLELEIFYGHPKCEVEVITKSHQFITDDRTASTRVHGLFSLIRAEN

*********VQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENG***************PYRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWPFTED*A*****SNCEDSDDEMLNGNLNRRNNVMTEFSNRTKSGQFSTVIWYWYLRYIKHRCNKKFLELEIFYGHPKCEVEVITKSHQFITDDRTASTRVHGLFSLIRA**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		275	2.2.26 [Sep-21-2011]
Q58CY2		166	Probable RNA-binding prot	yes	N/A	0.374	0.620	0.538	6e-25
Q3THJ3		170	Probable RNA-binding prot	yes	N/A	0.410	0.664	0.483	7e-25
Q5RKI6		167	Probable RNA-binding prot	yes	N/A	0.410	0.676	0.483	7e-25
Q4R354		165	Probable RNA-binding prot	N/A	N/A	0.36	0.6	0.55	1e-24
Q8N9N8		165	Probable RNA-binding prot	yes	N/A	0.36	0.6	0.55	1e-24
Q5RD29		166	Probable RNA-binding prot	yes	N/A	0.36	0.596	0.55	1e-24
Q6K1L7		188	Probable RNA-binding prot	yes	N/A	0.36	0.526	0.49	3e-24
Q0V9J5		179	Probable RNA-binding prot	yes	N/A	0.374	0.575	0.548	2e-23
Q5HZM1		169	Probable RNA-binding prot	N/A	N/A	0.374	0.609	0.548	3e-23
Q7SY07		172	Probable RNA-binding prot	yes	N/A	0.356	0.569	0.545	4e-23

>sp\|Q58CY2\|EIF1A_BOVIN Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1	Back alignment and function desciption

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 1   MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
           MS+ATKRKHV KE+L  E+ VP D   IV++ +  GNNLH++E   G+++ VSMP K+R 
Sbjct: 1   MSQATKRKHVVKEVLG-EHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59

Query: 61  NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
           NIWIK GDF+IV PIEEG KVKAEI  +L K ++  L++    P
Sbjct: 60  NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.
Bos taurus (taxid: 9913)

>sp\|Q3THJ3\|EIF1A_MOUSE Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2 SV=2	Back alignment and function description

>sp\|Q5RKI6\|EIF1A_RAT Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad PE=2 SV=1	Back alignment and function description

>sp\|Q4R354\|EIF1A_MACFA Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1	Back alignment and function description

>sp\|Q8N9N8\|EIF1A_HUMAN Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1	Back alignment and function description

>sp\|Q5RD29\|EIF1A_PONAB Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2 SV=1	Back alignment and function description

>sp\|Q6K1L7\|EIF1A_CHICK Probable RNA-binding protein EIF1AD OS=Gallus gallus GN=eif1ad PE=2 SV=1	Back alignment and function description

>sp\|Q0V9J5\|EIF1A_XENTR Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis GN=eif1ad PE=2 SV=1	Back alignment and function description

>sp\|Q5HZM1\|EIF1A_XENLA Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad PE=2 SV=1	Back alignment and function description

>sp\|Q7SY07\|EIF1A_DANRE Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		275
321458064		163	hypothetical protein DAPPUDRAFT_329420 [	0.374	0.631	0.615	2e-26
291230514		205	PREDICTED: hypothetical protein [Saccogl	0.534	0.717	0.458	2e-26
156381946		115	predicted protein [Nematostella vectensi	0.36	0.860	0.63	4e-25
357605860		153	translation initiation factor 1a [Danaus	0.363	0.653	0.538	6e-25
442751331		158	Hypothetical protein [Ixodes ricinus]	0.374	0.651	0.567	8e-25
114050725		150	translation initiation factor 1a [Bombyx	0.338	0.62	0.555	1e-24
67083851		156	unknown [Ixodes scapularis]	0.421	0.743	0.516	2e-24
405958347		161	Putative RNA-binding protein EIF1AD [Cra	0.378	0.645	0.542	3e-24
444724535		167	putative RNA-binding protein EIF1AD [Tup	0.410	0.676	0.491	9e-24
354494728		171	PREDICTED: probable RNA-binding protein	0.410	0.660	0.491	1e-23

>gi\|321458064\|gb\|EFX69139.1\| hypothetical protein DAPPUDRAFT_329420 [Daphnia pulex]	Back alignment and taxonomy information

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 1   MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
           MSKATKRKHV KE+L  +Y +PED   IVKI    GNNLH+IE   GEKY VSMP KFR 
Sbjct: 1   MSKATKRKHVTKEVLD-DYVLPEDNQKIVKILGGKGNNLHEIETSEGEKYLVSMPTKFRK 59

Query: 61  NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
           N+WIK GDFV+++PIEEG KVKAEI  IL  + I +++ Q K P
Sbjct: 60  NVWIKRGDFVLIQPIEEGEKVKAEIVAILYAEQIKYIQSQGKWP 103

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|291230514\|ref\|XP_002735202.1\| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|156381946\|ref\|XP_001632316.1\| predicted protein [Nematostella vectensis] gi\|156219370\|gb\|EDO40253.1\| predicted protein [Nematostella vectensis]	Back alignment and taxonomy information

>gi\|357605860\|gb\|EHJ64807.1\| translation initiation factor 1a [Danaus plexippus]	Back alignment and taxonomy information

>gi\|442751331\|gb\|JAA67825.1\| Hypothetical protein [Ixodes ricinus]	Back alignment and taxonomy information

>gi\|114050725\|ref\|NP_001040352.1\| translation initiation factor 1a [Bombyx mori] gi\|95102600\|gb\|ABF51238.1\| translation initiation factor 1a [Bombyx mori]	Back alignment and taxonomy information

>gi\|67083851\|gb\|AAY66860.1\| unknown [Ixodes scapularis]	Back alignment and taxonomy information

>gi\|405958347\|gb\|EKC24483.1\| Putative RNA-binding protein EIF1AD [Crassostrea gigas]	Back alignment and taxonomy information

>gi\|444724535\|gb\|ELW65138.1\| putative RNA-binding protein EIF1AD [Tupaia chinensis]	Back alignment and taxonomy information

>gi\|354494728\|ref\|XP_003509487.1\| PREDICTED: probable RNA-binding protein EIF1AD-like [Cricetulus griseus] gi\|344243252\|gb\|EGV99355.1\| putative RNA-binding protein EIF1AD [Cricetulus griseus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		275
UNIPROTKB\|J9NXA5		166	EIF1AD "Uncharacterized protei	0.447	0.740	0.472	1.1e-25
UNIPROTKB\|F1RU32		166	LOC100623051 "Uncharacterized	0.447	0.740	0.464	1.4e-25
UNIPROTKB\|Q58CY2		166	EIF1AD "Probable RNA-binding p	0.356	0.590	0.555	2.2e-25
UNIPROTKB\|E9PLI6		113	EIF1AD "Probable RNA-binding p	0.36	0.876	0.55	2.2e-25
UNIPROTKB\|E9PRR8		146	EIF1AD "Probable RNA-binding p	0.36	0.678	0.55	2.2e-25
UNIPROTKB\|E9PS76		114	EIF1AD "Probable RNA-binding p	0.36	0.868	0.55	2.2e-25
UNIPROTKB\|Q8N9N8		165	EIF1AD "Probable RNA-binding p	0.36	0.6	0.55	2.2e-25
RGD\|1304686		167	Eif1ad "eukaryotic translation	0.432	0.712	0.468	2.9e-25
MGI\|MGI:1917110		170	Eif1ad "eukaryotic translation	0.432	0.7	0.468	3.6e-25
ZFIN\|ZDB-GENE-040426-1199		172	eif1ad "eukaryotic translation	0.607	0.970	0.395	6.8e-24

UNIPROTKB\|J9NXA5 EIF1AD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/125 (47%), Positives = 82/125 (65%)

Query:     1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
             MS+ATKRKHV KE+L  E+ VP D   IV++ +  GNNLH++E   G+++ VSMP K+R 
Sbjct:     1 MSQATKRKHVVKEVLG-EHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59

Query:    61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGE 120
             NIWIK GDF+IV PIEEG KVKAEI  +L K ++  L+++  L P    ++         
Sbjct:    60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKE-GLWPEAFSEVAEKHNNNRN 118

Query:   121 QQAKP 125
             +Q +P
Sbjct:   119 RQTQP 123

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB\|F1RU32 LOC100623051 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58CY2 EIF1AD "Probable RNA-binding protein EIF1AD" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PLI6 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PRR8 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PS76 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8N9N8 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1304686 Eif1ad "eukaryotic translation initiation factor 1A domain containing" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1917110 Eif1ad "eukaryotic translation initiation factor 1A domain containing" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1199 eif1ad "eukaryotic translation initiation factor 1A domain containing" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0V9J5	EIF1A_XENTR	No assigned EC number	0.5480	0.3745	0.5754	yes	N/A
Q5RD29	EIF1A_PONAB	No assigned EC number	0.55	0.36	0.5963	yes	N/A
Q8N9N8	EIF1A_HUMAN	No assigned EC number	0.55	0.36	0.6	yes	N/A
Q58CY2	EIF1A_BOVIN	No assigned EC number	0.5384	0.3745	0.6204	yes	N/A
Q7SY07	EIF1A_DANRE	No assigned EC number	0.5454	0.3563	0.5697	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		275
cd05792		78	cd05792, S1_eIF1AD_like, S1_eIF1AD_like: eukaryoti	8e-31
smart00652		83	smart00652, eIF1a, eukaryotic translation initiati	3e-19
cd04456		78	cd04456, S1_IF1A_like, S1_IF1A_like: Translation i	8e-18
pfam01176		65	pfam01176, eIF-1a, Translation initiation factor 1	1e-15
cd05792		78	cd05792, S1_eIF1AD_like, S1_eIF1AD_like: eukaryoti	1e-05
TIGR00523		99	TIGR00523, eIF-1A, eukaryotic/archaeal initiation	2e-05
cd05793		77	cd05793, S1_IF1A, S1_IF1A: Translation initiation	1e-04
PRK04012		100	PRK04012, PRK04012, translation initiation factor	0.001
COG0361		75	COG0361, InfA, Translation initiation factor 1 (IF	0.004

>gnl\|CDD\|240218 cd05792, S1_eIF1AD_like, S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain	Back alignment and domain information

 Score =  109 bits (275), Expect = 8e-31
 Identities = 41/74 (55%), Positives = 59/74 (79%)

Query: 27  NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIE 86
            IV++  + GNNLH++E  +G +Y VSMP KFR NIWIK GDFV+V+PIEEG+KVKAEI 
Sbjct: 2   QIVRVLGSKGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLVEPIEEGDKVKAEIV 61

Query: 87  QILDKKYISFLKQQ 100
           +IL + ++ ++K++
Sbjct: 62  KILTRDHVKYIKEE 75

eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. Length = 78

>gnl\|CDD\|128900 smart00652, eIF1a, eukaryotic translation initiation factor 1A	Back alignment and domain information

>gnl\|CDD\|239903 cd04456, S1_IF1A_like, S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|216345 pfam01176, eIF-1a, Translation initiation factor 1A / IF-1	Back alignment and domain information

>gnl\|CDD\|240218 cd05792, S1_eIF1AD_like, S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|129614 TIGR00523, eIF-1A, eukaryotic/archaeal initiation factor 1A	Back alignment and domain information

>gnl\|CDD\|240219 cd05793, S1_IF1A, S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|179708 PRK04012, PRK04012, translation initiation factor IF-1A; Provisional	Back alignment and domain information

>gnl\|CDD\|223438 COG0361, InfA, Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		275
KOG2925\|consensus		167		100.0
cd05792		78	S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat	100.0
smart00652		83	eIF1a eukaryotic translation initiation factor 1A.	99.98
TIGR00523		99	eIF-1A eukaryotic/archaeal initiation factor 1A. R	99.98
PLN00208		145	translation initiation factor (eIF); Provisional	99.97
PRK04012		100	translation initiation factor IF-1A; Provisional	99.97
PTZ00329		155	eukaryotic translation initiation factor 1A; Provi	99.97
cd04456		78	S1_IF1A_like S1_IF1A_like: Translation initiation	99.97
cd05793		77	S1_IF1A S1_IF1A: Translation initiation factor IF1	99.95
PF01176		65	eIF-1a: Translation initiation factor 1A / IF-1; I	99.9
COG0361		75	InfA Translation initiation factor 1 (IF-1) [Trans	99.88
KOG3403\|consensus		145		99.85
TIGR00008		68	infA translation initiation factor IF-1. This fami	99.77
PRK12442		87	translation initiation factor IF-1; Reviewed	99.71
CHL00010		78	infA translation initiation factor 1	99.53
PRK00276		72	infA translation initiation factor IF-1; Validated	99.49
KOG2925\|consensus		167		99.46
cd05792		78	S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat	99.18
cd04451		64	S1_IF1 S1_IF1: Translation Initiation Factor IF1,	99.15
PLN00208		145	translation initiation factor (eIF); Provisional	98.65
cd04456		78	S1_IF1A_like S1_IF1A_like: Translation initiation	98.65
smart00652		83	eIF1a eukaryotic translation initiation factor 1A.	98.64
TIGR00523		99	eIF-1A eukaryotic/archaeal initiation factor 1A. R	98.5
PTZ00329		155	eukaryotic translation initiation factor 1A; Provi	98.33
cd05793		77	S1_IF1A S1_IF1A: Translation initiation factor IF1	97.84
cd04466		68	S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (	97.77
PRK04012		100	translation initiation factor IF-1A; Provisional	97.57
PRK00098		298	GTPase RsgA; Reviewed	95.56
PRK12289		352	GTPase RsgA; Reviewed	94.78
PRK12288		347	GTPase RsgA; Reviewed	94.57
cd01854		287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	93.88
PRK01889		356	GTPase RsgA; Reviewed	89.31
PF01176		65	eIF-1a: Translation initiation factor 1A / IF-1; I	83.2
cd00164		65	S1_like S1_like: Ribosomal protein S1-like RNA-bin	80.55

>KOG2925\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.1e-34  Score=247.35  Aligned_cols=162  Identities=33%  Similarity=0.479  Sum_probs=136.6

Q ss_pred             ccccchhhhhhhhhccCCCCCCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecC---CC
Q psy10593          3 KATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEE---GN   79 (275)
Q Consensus         3 ~~tKRKhv~~E~l~~e~~lP~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~---~~   79 (275)
                      .+|||||+.+.++ .+...|.+.|+||+|++.+|||+|+|+.++|...|++||.|||+.|||+||+||+|+|.++   ++
T Consensus         1 ~atkkry~~q~v~-de~~~le~~q~IaqVvqlrGsnlheV~danGq~~lvsmP~KfRksiWiRRg~FvvVdpiee~~~g~   79 (167)
T KOG2925|consen    1 MATKKRYLKQAVS-DEDFTLEECQSIAQVVQLRGSNLHEVMDANGQNSLVSMPAKFRKSIWIRRGSFVVVDPIEEEKSGS   79 (167)
T ss_pred             Cccchhhhccccc-CCCcchhhhhhHHHHHhcCCcchhhhhhcCCceeeeeCCHhhhhceEEeeCCEEEEccccccccCC
Confidence            3689999999998 8888999999999999999999999999999999999999999999999999999999998   88


Q ss_pred             CeEEEEEEEeChhhHHHHHHCCCCCcccccCcccccccccccccCCCCCceEEEeecCCCCeeeEEEEEecChhhHHHHH
Q psy10593         80 KVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLK  159 (275)
Q Consensus        80 kvKGeIV~ry~kdqVK~Lrk~G~WPkeF~~~~~~~~~e~~~~~~~~~r~~~~~v~pi~Eg~KVkaEI~~IL~kd~IK~lk  159 (275)
                      ||+|+|.|+|..+||+.|+|.|+||+.|.+.++++.....     |      +=.|.+                      
T Consensus        80 KVkgeI~yVl~~d~vr~lqk~g~WPe~F~d~alk~n~~~~-----t------~e~~~d----------------------  126 (167)
T KOG2925|consen   80 KVKGEICYVLFFDQVRLLQKSGEWPEIFKDTALKPNEKSS-----T------IEQHED----------------------  126 (167)
T ss_pred             ccceEEEEEEccHHHHHHHHcCCcchhhhhcccccccccC-----C------cccccc----------------------
Confidence            9999999999999999999999999999999888733221     0      000000                      


Q ss_pred             HhCCCCcccccchhccccCCCCCCCCcccCCCCCCceeeceeccccccccc
Q psy10593        160 QQNSWPFTEDSAEDKAKSNCEDSDDEMLNGNLNRRNNVMTEFSNRTKSGQF  210 (275)
Q Consensus       160 k~~~WP~~F~~~~~~~~~~~~~~dDdDLfvNtNR~~~~~~~~~~~~~~~~~  210 (275)
                       .++           ..++++++||++||+||||.+++=.|--+-|.+|.=
T Consensus       127 -d~l-----------s~sese~ddds~l~~ntnr~~~~~~eee~e~~~~a~  165 (167)
T KOG2925|consen  127 -DGL-----------SDSESEDDDDSPLQANTNRLRPFGVEEEAETDSGAD  165 (167)
T ss_pred             -cCC-----------CCcccccccCCchhccccccCcccccccCcccccCC
Confidence             011           122355568899999999999998887777777643

>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain	Back alignment and domain information

>smart00652 eIF1a eukaryotic translation initiation factor 1A	Back alignment and domain information

>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A	Back alignment and domain information

>PLN00208 translation initiation factor (eIF); Provisional	Back alignment and domain information

>PRK04012 translation initiation factor IF-1A; Provisional	Back alignment and domain information

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional	Back alignment and domain information

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain	Back alignment and domain information

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain	Back alignment and domain information

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins	Back alignment and domain information

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG3403\|consensus	Back alignment and domain information

>TIGR00008 infA translation initiation factor IF-1	Back alignment and domain information

>PRK12442 translation initiation factor IF-1; Reviewed	Back alignment and domain information

>CHL00010 infA translation initiation factor 1	Back alignment and domain information

>PRK00276 infA translation initiation factor IF-1; Validated	Back alignment and domain information

>KOG2925\|consensus	Back alignment and domain information

>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain	Back alignment and domain information

>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain	Back alignment and domain information

>PLN00208 translation initiation factor (eIF); Provisional	Back alignment and domain information

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain	Back alignment and domain information

>smart00652 eIF1a eukaryotic translation initiation factor 1A	Back alignment and domain information

>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A	Back alignment and domain information

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional	Back alignment and domain information

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain	Back alignment and domain information

>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain	Back alignment and domain information

>PRK04012 translation initiation factor IF-1A; Provisional	Back alignment and domain information

>PRK00098 GTPase RsgA; Reviewed	Back alignment and domain information

>PRK12289 GTPase RsgA; Reviewed	Back alignment and domain information

>PRK12288 GTPase RsgA; Reviewed	Back alignment and domain information

>cd01854 YjeQ_engC YjeQ/EngC	Back alignment and domain information

>PRK01889 GTPase RsgA; Reviewed	Back alignment and domain information

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins	Back alignment and domain information

>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		275
2dgy_A		111	Solution Structure Of The Eukaryotic Initiation Fac		7e-20
1jt8_A		102	Archaeal Initiation Factor-1a, Aif-1a Length = 102		2e-04

>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a In Mgc11102 Protein Length = 111

Back alignment and structure

Iteration: 1

Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 44/89 (49%), Positives = 62/89 (69%) Query: 16 SQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPI 75 S E+ VP + IV++ + GNNLH++E G+++ VSMP K+R NIWIK GDF+IV PI Sbjct: 6 SGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 Query: 76 EEGNKVKAEIEQILDKKYISFLKQQLKLP 104 EEG KVKAEI +L K ++ L+++ P Sbjct: 66 EEGEKVKAEISFVLCKDHVRSLQKEGFWP 94

PyMOL of 2dgy

>pdb|1JT8|A Chain A, Archaeal Initiation Factor-1a, Aif-1a Length = 102

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		275
2dgy_A		111	MGC11102 protein; EIF-1A, structural genomics, NPP	6e-23
1jt8_A		102	EIF-1A, probable translation initiation factor 1A;	5e-13
1d7q_A		143	Translation initiation factor 1A; OB-fold, beta-ba	6e-12
2oqk_A		117	Putative translation initiation factor EIF-1A; mal	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3ikm_A		1172	DNA polymerase subunit gamma-1; human mitochondria	9e-05

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111	Back alignment and structure

 Score = 89.6 bits (222), Expect = 6e-23
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 8/116 (6%)

Query: 13  ELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIV 72
              S E+ VP +   IV++ +  GNNLH++E   G+++ VSMP K+R NIWIK GDF+IV
Sbjct: 3   SGSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIV 62

Query: 73  KPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRD 128
            PIEEG KVKAEI  +L K ++  L+++   P          F E+ E+       
Sbjct: 63  DPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPE--------AFSEVAEKHNSGPSS 110

PyMOL of 2dgy

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Length = 102	Back alignment and structure

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 143	Back alignment and structure

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Length = 117	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Length = 1172	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		275
2dgy_A		111	MGC11102 protein; EIF-1A, structural genomics, NPP	100.0
1d7q_A		143	Translation initiation factor 1A; OB-fold, beta-ba	99.98
1jt8_A		102	EIF-1A, probable translation initiation factor 1A;	99.97
2oqk_A		117	Putative translation initiation factor EIF-1A; mal	99.96
3i4o_A		79	Translation initiation factor IF-1; cytoplasm, pro	99.72
1ah9_A		71	IF1, initiation factor 1; ribosome binding, protei	99.69
1hr0_W		71	Translation initiation factor; ribosomal subunit,	99.64
2dgy_A		111	MGC11102 protein; EIF-1A, structural genomics, NPP	98.88
1d7q_A		143	Translation initiation factor 1A; OB-fold, beta-ba	98.45
2oqk_A		117	Putative translation initiation factor EIF-1A; mal	98.34
1jt8_A		102	EIF-1A, probable translation initiation factor 1A;	98.1
1t9h_A		307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.35
2rcn_A		358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.21
2yv5_A		302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.58
2wfw_A		153	ARC; ATP-binding protein, proteasomal atpases, PAN	89.79
2wg5_A		109	General control protein GCN4, proteasome-activatin	83.6
2k52_A		80	Uncharacterized protein MJ1198; metal-binding, zin	83.52

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=6.6e-35  Score=237.37  Aligned_cols=101  Identities=44%  Similarity=0.700  Sum_probs=95.8

Q ss_pred             hhhhccCCCCCCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593         13 ELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK   92 (275)
Q Consensus        13 E~l~~e~~lP~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd   92 (275)
                      +++ .++++|++||++|+|++++|||+|+|+|+||+++||+|||||||+|||++||+|+|+|+++++++||+|+|||+++
T Consensus         4 ~~l-~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~   82 (111)
T 2dgy_A            4 GSS-GEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD   82 (111)
T ss_dssp             CCC-CSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred             hhh-ccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence            456 8899999999999999999999999999999999999999999999999999999999998779999999999999


Q ss_pred             hHHHHHHCCCCCcccccCcccc
Q psy10593         93 YISFLKQQLKLPPIENGDIVHH  114 (275)
Q Consensus        93 qVK~Lrk~G~WPkeF~~~~~~~  114 (275)
                      ||++|+++|+||++|.+..+..
T Consensus        83 qvk~L~k~g~wP~~F~~~~~~~  104 (111)
T 2dgy_A           83 HVRSLQKEGFWPEAFSEVAEKH  104 (111)
T ss_dssp             HHHHHHHHTCSCHHHHHHHTTC
T ss_pred             HHHHHHHcCCCChHHhhccccc
Confidence            9999999999999998766554

PyMOL of 2dgy

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5	Back alignment and structure

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5	Back alignment and structure

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}	Back alignment and structure

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5	Back alignment and structure

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5	Back alignment and structure

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W	Back alignment and structure

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5	Back alignment and structure

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}	Back alignment and structure

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5	Back alignment and structure

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8	Back alignment and structure

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V	Back alignment and structure

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}	Back alignment and structure

>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A	Back alignment and structure

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A	Back alignment and structure

>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		275
d1jt8a_		102	b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a	4e-15
d1d7qa_		143	b.40.4.5 (A:) Translation initiation factor-1a, eI	1e-13
d1ah9a_		71	b.40.4.5 (A:) Translational initiation factor 1, I	0.003

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102	Back information, alignment and structure


class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 1   MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
           M++  + + ++  +        E+   +  I Q  G +  ++    G+     +PG+ +N
Sbjct: 1   MAEQQQEQQIRVRIPR-----KEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKN 55

Query: 61  NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPI 106
            IW++ GD VIVKP E     K +I     K  + +LK++  L  +
Sbjct: 56  RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLDEL 101

PyMOL of d1jt8a_

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143	Back information, alignment and structure

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		275
d1jt8a_		102	Archaeal initiation factor-1a, aIF1a {Archaeon Met	99.95
d1d7qa_		143	Translation initiation factor-1a, eIF1a {Human (Ho	99.94
d1ah9a_		71	Translational initiation factor 1, IF1 {Escherichi	99.76
d1hr0w_		71	Translational initiation factor 1, IF1 {Escherichi	99.67
d1u0la1		66	Probable GTPase EngC (YjeQ), N-terminal domain {Th	98.02
d1t9ha1		67	Probable GTPase EngC (YjeQ), N-terminal domain {Ba	97.98
d1d7qa_		143	Translation initiation factor-1a, eIF1a {Human (Ho	97.9
d1jt8a_		102	Archaeal initiation factor-1a, aIF1a {Archaeon Met	97.02
d3d3ra1		76	Hydrogenase expression/formation protein HypC {She	85.28

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=6.6e-30  Score=202.59  Aligned_cols=89  Identities=27%  Similarity=0.414  Sum_probs=84.4

Q ss_pred             cCCCCCCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChhhHHHH
Q psy10593         18 EYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFL   97 (275)
Q Consensus        18 e~~lP~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kdqVK~L   97 (275)
                      ++|.|+++|++|+|++++||++|+|.|+||.+++|+||||||+++||++||+|||++|+++.+.||||+|+|+++|+++|
T Consensus        13 ~lp~~ee~e~y~~V~k~lG~~~~~V~c~dg~~rl~~irGK~Rk~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~~~ev~~L   92 (102)
T d1jt8a_          13 RIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWL   92 (102)
T ss_dssp             CCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCSHHHHH
T ss_pred             ECCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcCCcceeeEecCCCEEEEEeeecCCCcEEEEEEECCHHHHHHH
Confidence            45555789999999999999999999999999999999999999999999999999999987899999999999999999


Q ss_pred             HHCCCCCcc
Q psy10593         98 KQQLKLPPI  106 (275)
Q Consensus        98 rk~G~WPke  106 (275)
                      +++|+||+.
T Consensus        93 ~~~~~ipe~  101 (102)
T d1jt8a_          93 KRKGYLDEL  101 (102)
T ss_dssp             HHHHHHHHC
T ss_pred             HHcCCCCCc
Confidence            999999964

PyMOL of d1jt8a_

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure