Psyllid ID: psy10609
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | 2.2.26 [Sep-21-2011] | |||||||
| Q9D0R2 | 722 | Threonine--tRNA ligase, c | yes | N/A | 0.636 | 0.630 | 0.6 | 0.0 | |
| Q3ZBV8 | 723 | Threonine--tRNA ligase, c | yes | N/A | 0.636 | 0.629 | 0.6 | 0.0 | |
| Q5XHY5 | 695 | Threonine--tRNA ligase, c | yes | N/A | 0.636 | 0.654 | 0.6 | 0.0 | |
| P26639 | 723 | Threonine--tRNA ligase, c | yes | N/A | 0.636 | 0.629 | 0.591 | 0.0 | |
| Q0V9S0 | 814 | Probable threonine--tRNA | no | N/A | 0.634 | 0.557 | 0.565 | 1e-180 | |
| A2RTX5 | 802 | Probable threonine--tRNA | no | N/A | 0.634 | 0.566 | 0.546 | 1e-172 | |
| Q8BLY2 | 790 | Probable threonine--tRNA | no | N/A | 0.632 | 0.572 | 0.541 | 1e-170 | |
| P52709 | 725 | Threonine--tRNA ligase, c | yes | N/A | 0.633 | 0.624 | 0.545 | 1e-170 | |
| A6QNM8 | 724 | Probable threonine--tRNA | no | N/A | 0.632 | 0.624 | 0.495 | 1e-154 | |
| P04801 | 734 | Threonine--tRNA ligase, c | yes | N/A | 0.682 | 0.664 | 0.484 | 1e-151 |
| >sp|Q9D0R2|SYTC_MOUSE Threonine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Tars PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/570 (60%), Positives = 390/570 (68%), Gaps = 115/570 (20%)
Query: 190 RITLWDKLKKQYDE---EIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADS 246
R+ +++KLK ++D E AAK + I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+
Sbjct: 56 RLDMYNKLKAEHDSILAEKAAKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADN 115
Query: 247 TIIAK------DWTR---------------------------------ANKSRGNELC-- 265
T++AK D R + G LC
Sbjct: 116 TVVAKVNKVVWDLDRPLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYG 175
Query: 266 ---ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFK 316
E+ Y+ + VS+ DF +E L K I+KEKQ FERLE+KKE L+EMFK
Sbjct: 176 PPIENGFYYDMYLEEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFK----- 230
Query: 317 LRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPT 376
YN FK RIL EKVNTPT
Sbjct: 231 -------------------------------------------YNKFKCRILNEKVNTPT 247
Query: 377 TTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQL 422
TT YRCGPLIDLCRGPH NSSTYWEGKAD E+LQR+YGISFPD K L
Sbjct: 248 TTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMETLQRIYGISFPDPKLL 307
Query: 423 KEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRG 482
KEWEK QEEA RDHRKIGR+QEL+FFHELSPGSCFF PKGA+IYNTL+EFIRSEYRKRG
Sbjct: 308 KEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRG 367
Query: 483 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542
FQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKPMNCPGHCL+FDHR RSWR
Sbjct: 368 FQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFALKPMNCPGHCLMFDHRPRSWR 427
Query: 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS 602
ELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +EQI DEI G LDFLR VYS
Sbjct: 428 ELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYS 487
Query: 603 IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITI 662
+FGF+F L LSTRPEK+LG++E+WN+AEKQLE SLN FGE W NPGDGAFYGPKIDI I
Sbjct: 488 VFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQI 547
Query: 663 TDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 548 KDAIGRYHQCATIQLDFQLPIRFNLTYVSH 577
|
Mus musculus (taxid: 10090) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 3 |
| >sp|Q3ZBV8|SYTC_BOVIN Threonine--tRNA ligase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/570 (60%), Positives = 390/570 (68%), Gaps = 115/570 (20%)
Query: 190 RITLWDKLKKQYDEEIAAKVPEE---IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADS 246
R+ +++KLK ++D +A K ++ I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+
Sbjct: 57 RLEMYNKLKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADN 116
Query: 247 TIIAK------DWTR---------------------------------ANKSRGNELC-- 265
T+IAK D R + G LC
Sbjct: 117 TVIAKVNKAVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYG 176
Query: 266 ---ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFK 316
E+ Y+ + VS+ DF +E L K I+KEKQ FERLE+KKE L+EMFK
Sbjct: 177 PPIENGFYYDMYLEEGGVSSNDFSSLETLCKKIIKEKQAFERLEVKKETLLEMFK----- 231
Query: 317 LRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPT 376
YN FK RIL EKVNTPT
Sbjct: 232 -------------------------------------------YNKFKCRILNEKVNTPT 248
Query: 377 TTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQL 422
TT YRCGPLIDLCRGPH NSSTYWEGK+D E+LQR+YGISFPD K L
Sbjct: 249 TTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKSDMETLQRIYGISFPDPKML 308
Query: 423 KEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRG 482
KEWEK QEEA RDHRKIGR+QEL+FFHELSPGSCFF PKGA+IYNTL+EFIRSEYRKRG
Sbjct: 309 KEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIEFIRSEYRKRG 368
Query: 483 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542
FQEVV+PN+YN +LW TSGHW HYSENMFSF+VE E +ALKPMNCPGHCL+FDHR RSWR
Sbjct: 369 FQEVVTPNIYNSRLWVTSGHWEHYSENMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWR 428
Query: 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS 602
ELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +EQI DEI G LDFLR VYS
Sbjct: 429 ELPLRVADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYS 488
Query: 603 IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITI 662
IFGF+F L LSTRPEK+LG++EVWN+AEKQLE SLN FGE W NPGDGAFYGPKIDI I
Sbjct: 489 IFGFSFKLNLSTRPEKFLGDIEVWNQAEKQLENSLNDFGEKWELNPGDGAFYGPKIDIQI 548
Query: 663 TDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
DA+ R HQCATIQLDFQLPIRFNL +V +
Sbjct: 549 KDAIGRYHQCATIQLDFQLPIRFNLTFVSH 578
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Bos taurus (taxid: 9913) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5XHY5|SYTC_RAT Threonine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Tars PE=2 SV=1 | Back alignment and function description |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/570 (60%), Positives = 389/570 (68%), Gaps = 115/570 (20%)
Query: 190 RITLWDKLKKQYDE---EIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADS 246
R+ ++ KLK ++D E AAK + I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+
Sbjct: 29 RLDMYHKLKAEHDSILAEKAAKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADN 88
Query: 247 TIIAK------DWTR---------------------------------ANKSRGNELC-- 265
T++AK D R + G LC
Sbjct: 89 TVVAKVNKVVWDLDRPLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYG 148
Query: 266 ---ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFK 316
E+ Y+ + VS+ DF +E L K I+KEKQ FERLE+KKE L+EMFK
Sbjct: 149 PPIENGFYYDMYLEEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFK----- 203
Query: 317 LRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPT 376
YN FK RIL EKVNTPT
Sbjct: 204 -------------------------------------------YNKFKCRILNEKVNTPT 220
Query: 377 TTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQL 422
TT YRCGPLIDLCRGPH NSSTYWEGKAD E+LQR+YGISFPD K L
Sbjct: 221 TTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMETLQRIYGISFPDPKLL 280
Query: 423 KEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRG 482
KEWEK QEEA RDHRKIGR+QEL+FFHELSPGSCFF PKGA+IYNTL+EFIRSEYRKRG
Sbjct: 281 KEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLMEFIRSEYRKRG 340
Query: 483 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542
FQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKPMNCPGHCL+FDHR RSWR
Sbjct: 341 FQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFALKPMNCPGHCLMFDHRPRSWR 400
Query: 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS 602
ELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +EQI DEI G LDFLR VYS
Sbjct: 401 ELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYS 460
Query: 603 IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITI 662
+FGF+F L LSTRPEK+LG++E+WN+AEKQLE SLN FGE W NPGDGAFYGPKIDI I
Sbjct: 461 VFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQI 520
Query: 663 TDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 521 KDAIGRYHQCATIQLDFQLPIRFNLTYVSH 550
|
Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3 | Back alignment and function description |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/570 (59%), Positives = 386/570 (67%), Gaps = 115/570 (20%)
Query: 190 RITLWDKLKKQYDEEIAAKVPEE---IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADS 246
R+ +++ LK ++D +A K ++ I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+
Sbjct: 57 RLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADN 116
Query: 247 TIIAK------DWTR---------------------------------ANKSRGNELC-- 265
T+IAK D R + G LC
Sbjct: 117 TVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYG 176
Query: 266 ---ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFK 316
E+ Y+ + VS+ DF +E L K I+KEKQ FERLE+KKE L+ MFK
Sbjct: 177 PPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFK----- 231
Query: 317 LRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPT 376
YN FK RIL EKVNTPT
Sbjct: 232 -------------------------------------------YNKFKCRILNEKVNTPT 248
Query: 377 TTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQL 422
TT YRCGPLIDLCRGPH NSSTYWEGKAD E+LQR+YGISFPD K L
Sbjct: 249 TTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGISFPDPKML 308
Query: 423 KEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRG 482
KEWEK QEEA RDHRKIGR+QEL+FFHELSPGSCFF PKGA+IYN L+EFIRSEYRKRG
Sbjct: 309 KEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRG 368
Query: 483 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542
FQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKPMNCPGHCL+FDHR RSWR
Sbjct: 369 FQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWR 428
Query: 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS 602
ELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +EQI DEI G LDFLR VYS
Sbjct: 429 ELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYS 488
Query: 603 IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITI 662
+FGF+F L LSTRPEK+LG++EVW++AEKQLE SLN FGE W N GDGAFYGPKIDI I
Sbjct: 489 VFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQI 548
Query: 663 TDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 549 KDAIGRYHQCATIQLDFQLPIRFNLTYVSH 578
|
Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q0V9S0|SYTC2_XENTR Probable threonine--tRNA ligase 2, cytoplasmic OS=Xenopus tropicalis GN=tarsl2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust.
Identities = 322/569 (56%), Positives = 380/569 (66%), Gaps = 115/569 (20%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEE---IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLAD 245
+R+ L++ LK ++D +AA+ + I++TL DGK V +SW+TTPY VA GISKGLAD
Sbjct: 147 DRLALYETLKNEHDALLAARAAHQSKPIKITLADGKQVDGESWKTTPYQVAIGISKGLAD 206
Query: 246 STIIAK------DWTRANKSRGNE---------------------------------LC- 265
+ +IAK D R + N LC
Sbjct: 207 NVVIAKVNNELWDLDRPLEQDSNVELLKFDSEEAQAVYWHSSAHILGETMENFYGGCLCY 266
Query: 266 ----ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPF 315
E+ Y+ + VS+ +FP +E + K I+KEKQPFERLE+ K+ L+EMFK
Sbjct: 267 GPPIENGFYYDMYLDGRGVSSNEFPSLENMCKAIIKEKQPFERLEVSKDLLLEMFK---- 322
Query: 316 KLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTP 375
YN FK RIL EKV+TP
Sbjct: 323 --------------------------------------------YNKFKCRILNEKVDTP 338
Query: 376 TTTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQ 421
TTT YRCGPLIDLCRGPH NSSTYWEG+AD E+LQR+YGISFPD+K
Sbjct: 339 TTTVYRCGPLIDLCRGPHVRHTGKIKTLKIYKNSSTYWEGRADMETLQRIYGISFPDSKL 398
Query: 422 LKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKR 481
+KEWE+ QEEA RDHRKIGR+QELFFFH+LSPGSCFF P+GA IYNTL +FI+ EY+ R
Sbjct: 399 MKEWEQFQEEAKNRDHRKIGRDQELFFFHDLSPGSCFFLPRGAHIYNTLTDFIKGEYQIR 458
Query: 482 GFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 541
F EV SPN+YN KLW+ SGHW HYSENMFSF+VE ET+ALKPMNCPGHCL+F HR RSW
Sbjct: 459 NFTEVASPNIYNSKLWEMSGHWQHYSENMFSFEVEKETFALKPMNCPGHCLMFGHRPRSW 518
Query: 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVY 601
RELPLR ADFGVLHRNELSG L+GLTRVRRFQQDDAHIFCT++QI +E+ G L FL++VY
Sbjct: 519 RELPLRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTMDQIQEEMNGCLQFLQSVY 578
Query: 602 SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDIT 661
+FGFTF L LSTRPE YLGE+E+WN+AEKQLE+SLN FGEPW NPGDGAFYGPKIDI
Sbjct: 579 KVFGFTFQLHLSTRPENYLGEIEIWNEAEKQLESSLNQFGEPWKLNPGDGAFYGPKIDIK 638
Query: 662 ITDALKRPHQCATIQLDFQLPIRFNLAYV 690
I DA+ R HQCATIQLDFQLPIRFNL YV
Sbjct: 639 IKDAIGRYHQCATIQLDFQLPIRFNLTYV 667
|
Xenopus tropicalis (taxid: 8364) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|A2RTX5|SYTC2_HUMAN Probable threonine--tRNA ligase 2, cytoplasmic OS=Homo sapiens GN=TARSL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 312/571 (54%), Positives = 368/571 (64%), Gaps = 117/571 (20%)
Query: 189 ERITLWDKLKKQYDEEIA-----AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGL 243
ER+ L++ LKK + +A I V + DG+ V + W+TTPY VAA IS+ L
Sbjct: 133 ERLKLFEILKKDHQLLLAIYGKKGDTSNIITVRVADGQTVQGEVWKTTPYQVAAEISQEL 192
Query: 244 ADSTIIAK------DWTRANKSR---------------------------------GNEL 264
A+ST+IAK D R + G L
Sbjct: 193 AESTVIAKVNGELWDLDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHL 252
Query: 265 C-----ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYN 313
C E+ Y+ + VS+ + +E + K I+KEKQPFERLE+ KE L+EMFK
Sbjct: 253 CYGPPIENGFYYDMFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFK-- 310
Query: 314 PFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVN 373
YN FK RIL EKVN
Sbjct: 311 ----------------------------------------------YNKFKCRILNEKVN 324
Query: 374 TPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDN 419
T TTT YRCGPLIDLC+GPH NSSTYWEG + E+LQR+YGISFPDN
Sbjct: 325 TATTTVYRCGPLIDLCKGPHVRHTGKIKTIKIFKNSSTYWEGNPEMETLQRIYGISFPDN 384
Query: 420 KQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYR 479
K +++WEK QEEA RDHRKIG+EQELFFFH+LSPGSCFF P+GAFIYNTL +FIR EY
Sbjct: 385 KMMRDWEKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIREEYH 444
Query: 480 KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539
KR F EV+SPN+YN KLW+ SGHW HYSENMF+F++E +T+ALKPMNCPGHCL+F HR R
Sbjct: 445 KRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDTFALKPMNCPGHCLMFAHRPR 504
Query: 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRN 599
SWRE+P+R ADFGVLHRNELSG L+GLTRVRRFQQDDAHIFCTVEQI +EI G L FL++
Sbjct: 505 SWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQIEEEIKGCLQFLQS 564
Query: 600 VYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKID 659
VYS FGF+F L LSTRPE +LGE+E+WN+AEKQL+ SL FGEPW NPGDGAFYGPKID
Sbjct: 565 VYSTFGFSFQLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDGAFYGPKID 624
Query: 660 ITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
I I DA+ R HQCATIQLDFQLPIRFNL YV
Sbjct: 625 IKIKDAIGRYHQCATIQLDFQLPIRFNLTYV 655
|
Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8BLY2|SYTC2_MOUSE Probable threonine--tRNA ligase 2, cytoplasmic OS=Mus musculus GN=Tarsl2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 600 bits (1547), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/572 (54%), Positives = 369/572 (64%), Gaps = 120/572 (20%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEE------IQVTLPDGKIVPAKSWRTTPYDVAAGISKG 242
ER+ L++ LK D ++ E+ I V + GK V + W+TTPY VAAGISK
Sbjct: 122 ERLQLFETLKT--DHQLLPATQEKKNTNNVISVRVAGGKTVQGERWKTTPYQVAAGISKE 179
Query: 243 LADSTIIAK------DWTRANKSR---------------------------------GNE 263
LA+ T+IAK D R + G
Sbjct: 180 LAEHTVIAKVNGVLWDLDRPLEGDSTVELLMFDNEEAQAVYWHSSAHILGEAMELYYGGH 239
Query: 264 LC-----ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY 312
LC E+ Y+ + VS+ + +E + K I+KEKQPFERLE+ K+ L+EMFK
Sbjct: 240 LCYGPPIENGFYYDMFIEDRVVSSTELSALENICKTIIKEKQPFERLEVSKDTLLEMFK- 298
Query: 313 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKV 372
YN FK RILKEKV
Sbjct: 299 -----------------------------------------------YNKFKCRILKEKV 311
Query: 373 NTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPD 418
+TPTTT YRCGPLIDLC+GPH NSSTYWEG + E+LQR+YGISFPD
Sbjct: 312 DTPTTTVYRCGPLIDLCKGPHVRHTGKIKAIKIFKNSSTYWEGNPEMETLQRIYGISFPD 371
Query: 419 NKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEY 478
+K +K+WEK QEEA RDHRKIG+EQELFFFH+LSPGSCFF P+GAFIYN L++FIR EY
Sbjct: 372 SKMMKDWEKFQEEAKSRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNALMDFIREEY 431
Query: 479 RKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRV 538
KR F EV+SPN+YN KLW+TSGHW HYS NMF+FDVE +T+ALKPMNCPGHCL+F HR
Sbjct: 432 HKRNFTEVLSPNMYNSKLWETSGHWQHYSNNMFTFDVEKDTFALKPMNCPGHCLMFAHRP 491
Query: 539 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLR 598
RSWRE+P+R ADFGVLHRNELSG L+GLTRVRRFQQDDAHIFC VEQI +EI G L FL+
Sbjct: 492 RSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMVEQIEEEIKGCLHFLQ 551
Query: 599 NVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKI 658
+VYS FGF+F L LSTRPE +LGE+E+W++AE+QL+ SL FG+PW NPGDGAFYGPKI
Sbjct: 552 SVYSTFGFSFQLNLSTRPEHFLGEIEIWDEAERQLQNSLVEFGKPWKINPGDGAFYGPKI 611
Query: 659 DITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
DI I DA+ R HQCATIQLDFQLPIRFNL YV
Sbjct: 612 DIKIKDAIGRYHQCATIQLDFQLPIRFNLTYV 643
|
Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|P52709|SYTC_CAEEL Threonine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=trs-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 309/566 (54%), Positives = 367/566 (64%), Gaps = 113/566 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
ERI LWDKLK +YD EIAAK E IQ+TLPDGKI K+WRTTP+++A ISKGLA++ +
Sbjct: 58 ERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPFEIAERISKGLAEAAV 117
Query: 249 IAK------DWTRANKSR---------------------------------GNELC---- 265
IAK D R + G LC
Sbjct: 118 IAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGEAMERYCGGHLCYGPP 177
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
+ Y+ + + DFP ++ ++K VK+KQ FERLEM KEDL+EMFK
Sbjct: 178 IQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTKEDLLEMFK------- 230
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RI+ EK++TP TT
Sbjct: 231 -----------------------------------------YNEFKVRIITEKIHTPKTT 249
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
YRCGPLIDLCRGPH NSS+YWEGKADAESLQR+YGISFPD+KQLKE
Sbjct: 250 VYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSSYWEGKADAESLQRLYGISFPDSKQLKE 309
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
W+KLQEEAAKRDHRK+G+E +LFFFH+LSPGS F+ PKGA IYN LV+FIR +YR+RGF
Sbjct: 310 WQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFT 369
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EV++PN+YN KLW+TSGHW HYSE+MF +VE E + LKPMNCPGHCL+F H ++ EL
Sbjct: 370 EVITPNMYNKKLWETSGHWQHYSEDMFKIEVEKEEFGLKPMNCPGHCLMFGHMPHTYNEL 429
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVY-SI 603
P R ADFGVLHRNE+SGALTGLTRVRRFQQDDAHIFC +QI +EI LDFL Y +
Sbjct: 430 PFRFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQISEEIKQCLDFLEYAYEKV 489
Query: 604 FGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT 663
FGFTF L LSTRPE +LG +E W+KAE L +LN+ G W NPGDGAFYGPKIDITI
Sbjct: 490 FGFTFKLNLSTRPEGFLGNIETWDKAEADLTNALNASGRKWVLNPGDGAFYGPKIDITIQ 549
Query: 664 DALKRPHQCATIQLDFQLPIRFNLAY 689
DALKR QCATIQLDFQLP +F+L+Y
Sbjct: 550 DALKRNFQCATIQLDFQLPNQFDLSY 575
|
Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|A6QNM8|SYTC2_BOVIN Probable threonine--tRNA ligase 2, cytoplasmic OS=Bos taurus GN=TARSL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 284/573 (49%), Positives = 362/573 (63%), Gaps = 121/573 (21%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEE-------IQVTLPDGKIVPAKSWRTTPYDVAAGISK 241
ER+ ++ LKK D ++ + E+ I V + DG+ V ++W+TTPY VAA IS+
Sbjct: 131 ERLKFFEILKK--DHQLLLAIYEKKGDSSNVITVRVADGRTVKGEAWKTTPYQVAAEISQ 188
Query: 242 GLA---------------------DSTI----------IAKDWTRANKSRGNEL------ 264
LA D+T+ A W + G L
Sbjct: 189 ELAETTVVAKVNGELWDLDRPLEGDATVELLTFEDEEARAVYWHSSAHVLGEALELHYGG 248
Query: 265 ---C----ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFK 311
C + S ++ + VS+ + PV+E + + I+KE+QPFERLE+ + L+++FK
Sbjct: 249 LLCCSPPGDGSFHYDVYLEDRAVSSAELPVLESMCQAIIKEQQPFERLEVSTKVLLDLFK 308
Query: 312 YNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEK 371
YN FK RILKEK
Sbjct: 309 ------------------------------------------------YNKFKCRILKEK 320
Query: 372 VNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFP 417
V TPTTT YRCGPL++LC+GPH NS YW + E LQRVYG+SFP
Sbjct: 321 VATPTTTVYRCGPLVELCKGPHVRHTGTIKVIKIFKNSLAYWADNPEMEMLQRVYGVSFP 380
Query: 418 DNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSE 477
D +++ WE+LQEEA RDHR IG+EQELFFFH+LSPGSCFF P+GA IYNTL++FIR +
Sbjct: 381 DEQRMAAWEELQEEARARDHRTIGKEQELFFFHDLSPGSCFFLPRGACIYNTLIDFIREQ 440
Query: 478 YRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHR 537
+ +R F EV+SPN+Y+ KLW+ SGHW HYSENMF+FD++ +T+ALKPMNCPGHCL+F HR
Sbjct: 441 HHQRNFTEVLSPNMYSCKLWEASGHWQHYSENMFTFDIDKDTFALKPMNCPGHCLMFAHR 500
Query: 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597
RSWRE+P+R+ADFGVLHRNE SGAL+GLT VRRFQQDDAHIFCTV Q+ +EI G L FL
Sbjct: 501 PRSWREMPIRLADFGVLHRNEPSGALSGLTCVRRFQQDDAHIFCTVGQLEEEIKGCLQFL 560
Query: 598 RNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPK 657
++VYS FGF+F L LSTRPE +LG++E+W++AEKQL+ SL FG+PW NPG+GAFYGPK
Sbjct: 561 QSVYSTFGFSFQLNLSTRPENFLGKIELWDEAEKQLQNSLMEFGKPWKINPGEGAFYGPK 620
Query: 658 IDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
ID+ I DAL R HQCATIQLDFQLPIRFNL YV
Sbjct: 621 IDLEIKDALGRYHQCATIQLDFQLPIRFNLTYV 653
|
Bos taurus (taxid: 9913) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|P04801|SYTC_YEAST Threonine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust.
Identities = 286/590 (48%), Positives = 368/590 (62%), Gaps = 102/590 (17%)
Query: 180 MYLDGEAQM--ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAA 237
+YLD E ERI ++D+L+K+Y++++A+ +++ L DG + A SW TTP D+A
Sbjct: 40 LYLDPEPTFIEERIEMFDRLQKEYNDKVASMPRVPLKIVLKDGAVKEATSWETTPMDIAK 99
Query: 238 GISKGLADSTIIAK------DWTRANKSRGNE-------------------------LCE 266
GISK LAD I+K D R + NE L E
Sbjct: 100 GISKSLADRLCISKVNGQLWDLDRPFEGEANEEIKLELLDFESDEGKKVFWHSSAHVLGE 159
Query: 267 SSQ-YFSLVSTLDFPVMEGL---------MKDI-----------------------VKEK 293
S + + L P +G MKDI +K+K
Sbjct: 160 SCECHLGAHICLGPPTDDGFFYEMAVRDSMKDISESPERTVSQADFPGLEGVAKNVIKQK 219
Query: 294 QPFERLEMKKEDLIEMFKYNPFKLRILKEKV-NTPTTTAYRCGPLIDLCRGPHVRHTGKI 352
Q FERL M KEDL++MF Y+ +K +++ KV + TT YRCG LIDLC GPH+ HTG+I
Sbjct: 220 QKFERLVMSKEDLLKMFHYSKYKTYLVQTKVPDGGATTVYRCGKLIDLCVGPHIPHTGRI 279
Query: 353 KAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVY 412
KAFK+ K NSS Y+ G A +SLQRVY
Sbjct: 280 KAFKLLK----------------------------------NSSCYFLGDATNDSLQRVY 305
Query: 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVE 472
GISFPD K + K EA+ RDHRKIG+EQELF F+E+SPGSCF+ P G IYNTLV+
Sbjct: 306 GISFPDKKLMDAHLKFLAEASMRDHRKIGKEQELFLFNEMSPGSCFWLPHGTRIYNTLVD 365
Query: 473 FIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCL 532
+R+EYRKRG++EV++PN+YN KLW+TSGHWA+Y ENMF+F+VE ET+ LKPMNCPGHCL
Sbjct: 366 LLRTEYRKRGYEEVITPNMYNSKLWETSGHWANYKENMFTFEVEKETFGLKPMNCPGHCL 425
Query: 533 IFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 592
+F R RS+RELP R+ADFGV+HRNE SGAL+GLTRVRRFQQDDAHIFCT +QI EI
Sbjct: 426 MFKSRERSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTHDQIESEIEN 485
Query: 593 ALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGA 652
+FL+ +Y +FGF F + LSTRPEKY+G++E W+ AE +LE++L +G W N GDGA
Sbjct: 486 IFNFLQYIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINAGDGA 545
Query: 653 FYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAY-VKNVRAQTHELP 701
FYGPKIDI I+DAL+R HQCATIQLDFQLP RF L + K+ ++++E P
Sbjct: 546 FYGPKIDIMISDALRRWHQCATIQLDFQLPNRFELEFKSKDQDSESYERP 595
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| 328710126 | 714 | PREDICTED: threonyl-tRNA synthetase, cyt | 0.634 | 0.635 | 0.644 | 0.0 | |
| 307200699 | 691 | Threonyl-tRNA synthetase, cytoplasmic [H | 0.634 | 0.657 | 0.625 | 0.0 | |
| 340717366 | 725 | PREDICTED: threonyl-tRNA synthetase, cyt | 0.634 | 0.626 | 0.625 | 0.0 | |
| 383856199 | 712 | PREDICTED: threonine--tRNA ligase, cytop | 0.644 | 0.647 | 0.619 | 0.0 | |
| 345484325 | 705 | PREDICTED: threonyl-tRNA synthetase, cyt | 0.644 | 0.653 | 0.628 | 0.0 | |
| 307169877 | 689 | Threonyl-tRNA synthetase, cytoplasmic [C | 0.634 | 0.658 | 0.621 | 0.0 | |
| 328778641 | 718 | PREDICTED: threonyl-tRNA synthetase, cyt | 0.644 | 0.642 | 0.619 | 0.0 | |
| 242024338 | 717 | Threonyl-tRNA synthetase, cytoplasmic, p | 0.634 | 0.633 | 0.627 | 0.0 | |
| 350413351 | 690 | PREDICTED: threonyl-tRNA synthetase, cyt | 0.644 | 0.668 | 0.616 | 0.0 | |
| 332030887 | 714 | Threonyl-tRNA synthetase, cytoplasmic [A | 0.644 | 0.645 | 0.617 | 0.0 |
| >gi|328710126|ref|XP_001950747.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/566 (64%), Positives = 405/566 (71%), Gaps = 112/566 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+R+ LWDKLK+QY+ E+A K+ E I VT PDGK AK+W++TPYDVA GIS+GLAD+T+
Sbjct: 51 DRLKLWDKLKEQYNNELANKILEPITVTFPDGKTTNAKAWQSTPYDVAKGISQGLADNTV 110
Query: 249 IAK-----------------------DWTRANKS----------------RGNELC---- 265
IAK D A K G LC
Sbjct: 111 IAKVNGELWDLDRPLEKDSTLQLLKIDNEEAQKVFWHSSAHMLGEAMERIYGGCLCYGPP 170
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E Y+ + VS DFPVME L+K IVKEKQPFERLE+ KEDL+EMFK
Sbjct: 171 IEGGFYYDMFIENKGVSNFDFPVMENLVKQIVKEKQPFERLEVSKEDLLEMFK------- 223
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RIL EKV TPTTT
Sbjct: 224 -----------------------------------------YNEFKVRILNEKVTTPTTT 242
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
YRCGPLIDLCRGPH NS+TYWEG + AE+LQRVYGISF DNKQ+KE
Sbjct: 243 IYRCGPLIDLCRGPHIRHTGKVKAFKVIKNSATYWEGNSTAETLQRVYGISFSDNKQMKE 302
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAA+RDHRKIGREQELFFFHELSPGSCFFQPKGA IYNTL+EFI+SEYRKRGFQ
Sbjct: 303 WEKFQEEAARRDHRKIGREQELFFFHELSPGSCFFQPKGAHIYNTLIEFIKSEYRKRGFQ 362
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EVVSPN+YNVKLWQTSGHWAHY+ENMFSFDVE ETYALKPMNCPGHCL+FDHR RSWREL
Sbjct: 363 EVVSPNIYNVKLWQTSGHWAHYAENMFSFDVEKETYALKPMNCPGHCLMFDHRNRSWREL 422
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT +QIG E++ +LDFLR+VY++F
Sbjct: 423 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTTDQIGQEMMSSLDFLRHVYTVF 482
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTF+LRLSTRPEKYLGELE+W AEKQL SLNSFGEPWT NPGDGAFYGPKIDITI+D
Sbjct: 483 GFTFHLRLSTRPEKYLGELEMWENAEKQLADSLNSFGEPWTLNPGDGAFYGPKIDITISD 542
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYV 690
ALKR HQCATIQLDFQLPIRFNL ++
Sbjct: 543 ALKRQHQCATIQLDFQLPIRFNLNFI 568
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307200699|gb|EFN80796.1| Threonyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/566 (62%), Positives = 404/566 (71%), Gaps = 112/566 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+R+ LWDKLKK+Y+ E+ A+ P +I V LPDGK V A+SWR+TPYDVA IS+GLAD+T+
Sbjct: 28 DRLMLWDKLKKEYENELIARTPADITVMLPDGKEVSAQSWRSTPYDVAKSISQGLADNTV 87
Query: 249 IAK------DWTR---------------------------------ANKSRGNELC---- 265
IAK D R + G LC
Sbjct: 88 IAKVNNELWDLDRPLEGDCKLQLLKFDDPEGQQVFWHSSAHILGEAMERVYGGCLCYGPP 147
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S DFP +E L K+IVKEKQPFERLEM KE+L+EMFK
Sbjct: 148 IENGFYYDMHLDDKGISYTDFPYLESLYKNIVKEKQPFERLEMTKENLLEMFK------- 200
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FKLRI+ EK++TPTTT
Sbjct: 201 -----------------------------------------YNEFKLRIINEKIHTPTTT 219
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
AYRCGPLIDLCRGPH NSS YWEG A+AESLQR+YGISFPDNKQLKE
Sbjct: 220 AYRCGPLIDLCRGPHVRHTGKIRAVKITKNSSAYWEGNANAESLQRLYGISFPDNKQLKE 279
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEKLQEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA+IYNTL++FIRSEYRKRGFQ
Sbjct: 280 WEKLQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLIDFIRSEYRKRGFQ 339
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EV+SPN+YN KLWQ SGHW HY+ENMFSFDVE ETYALKPMNCPGHC+IFD R RSWREL
Sbjct: 340 EVISPNIYNSKLWQVSGHWQHYAENMFSFDVEKETYALKPMNCPGHCMIFDVRSRSWREL 399
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLR+ADFGVLHRNE+SGALTGLTRVRRFQQDDAHIFC+V+QI EI+ ALDFLR+VYS+F
Sbjct: 400 PLRLADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCSVDQINKEILSALDFLRHVYSVF 459
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTF+L LSTRPEK+LG++ +WN+AEK LE SLN+F EPWT NP DGAFYGPKIDITI D
Sbjct: 460 GFTFDLCLSTRPEKFLGDIAIWNQAEKALEDSLNTFDEPWTLNPQDGAFYGPKIDITIRD 519
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYV 690
ALKR HQCATIQLDFQLPIRFNL+YV
Sbjct: 520 ALKRAHQCATIQLDFQLPIRFNLSYV 545
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340717366|ref|XP_003397155.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/566 (62%), Positives = 404/566 (71%), Gaps = 112/566 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+RI LWDKLK +Y+ +A K +I+VTLPDGK V A+SWRTTPY++A IS+GLADST+
Sbjct: 62 DRIALWDKLKAEYETSLALKTVTDIKVTLPDGKDVIAQSWRTTPYEIAKNISQGLADSTV 121
Query: 249 IAK------DWTRANKS---------------------------------RGNELC---- 265
IAK D R +S G LC
Sbjct: 122 IAKVNNELWDLDRPLESDCKLELLKFDHPDGQQVFWHSSAHILGEAMERVYGGCLCYGPP 181
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S LDFP +E L K I K+KQPFERLEM KEDL+EMFK
Sbjct: 182 IENGFYYDMYVGETGISNLDFPFLETLYKKIAKDKQPFERLEMTKEDLLEMFK------- 234
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RI+ EK++TPTTT
Sbjct: 235 -----------------------------------------YNEFKVRIINEKIHTPTTT 253
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
YRCGPLIDLCRGPH SSTYWEG A+AESLQR+YGISFPD KQLKE
Sbjct: 254 VYRCGPLIDLCRGPHVRHTGKVKAIKITKGSSTYWEGNANAESLQRIYGISFPDTKQLKE 313
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA+IYNTLVEFIRSEYRKRGFQ
Sbjct: 314 WEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQ 373
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EVV+PN+YN KLWQTSGHW HY+ENMFSFDVE ET+ALKPMNCPGHC+IFD R+RSWREL
Sbjct: 374 EVVTPNIYNSKLWQTSGHWLHYAENMFSFDVEKETFALKPMNCPGHCMIFDVRIRSWREL 433
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC+V+QI DE++GALDFLR+VYS+F
Sbjct: 434 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSVDQIKDEMIGALDFLRHVYSVF 493
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTFNL LSTRPEKY+G++E+W++AEK L SL++FGEPW NP DGAFYGPKIDITI D
Sbjct: 494 GFTFNLCLSTRPEKYMGDIEMWDQAEKALAESLDAFGEPWKINPEDGAFYGPKIDITIMD 553
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYV 690
ALKR HQCATIQLDFQLPIRFNL+Y+
Sbjct: 554 ALKRHHQCATIQLDFQLPIRFNLSYI 579
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383856199|ref|XP_003703597.1| PREDICTED: threonine--tRNA ligase, cytoplasmic-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/573 (61%), Positives = 403/573 (70%), Gaps = 112/573 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+RI LW+KLK +Y+E +A K +I +TLPDGK V +SWRTTPY++A IS+GLAD+T+
Sbjct: 53 DRIELWNKLKAEYEESLATKSVNDITITLPDGKEVIGQSWRTTPYEIAKNISQGLADNTV 112
Query: 249 IAK------DWTR---------------------------------ANKSRGNELC---- 265
IAK D R + G LC
Sbjct: 113 IAKVNNELWDLDRPLEYDCKLELLKFDDPDAQQVFWHSSAHVLGEAMERIYGGCLCYGPP 172
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S LDFP +E L K+IVKEKQPFERLEM KEDL++MFK
Sbjct: 173 IENGFYYDMYLGDKGISNLDFPFLESLYKNIVKEKQPFERLEMTKEDLLDMFK------- 225
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FKLRI+ EK++TPTTT
Sbjct: 226 -----------------------------------------YNEFKLRIINEKIHTPTTT 244
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
YRCGPLIDLCRGPH NSSTYWEG A+AESLQRVYGISFPD KQLKE
Sbjct: 245 VYRCGPLIDLCRGPHIRHTGKVKAIKITKNSSTYWEGNANAESLQRVYGISFPDTKQLKE 304
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA+IYNTLVEFIRSEYRKRGFQ
Sbjct: 305 WEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQ 364
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EVV+PN+YN KLWQTSGHW HY+ENMFSFDVE ET+ALKPMNCPGHC+IFD R RSWREL
Sbjct: 365 EVVTPNIYNSKLWQTSGHWMHYAENMFSFDVEKETFALKPMNCPGHCMIFDVRNRSWREL 424
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +QI DE+ GAL+FLR+VYS+F
Sbjct: 425 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAADQIKDEVTGALEFLRHVYSVF 484
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTFNL LSTRPEKYLG+L +W++AEK L+ SL+ FG+PW NPGDGAFYGPKIDITI D
Sbjct: 485 GFTFNLCLSTRPEKYLGDLAMWDQAEKALQESLDVFGDPWKFNPGDGAFYGPKIDITIMD 544
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697
ALKR HQCATIQLDFQLPIRFNL+YV +T
Sbjct: 545 ALKRSHQCATIQLDFQLPIRFNLSYVNEAGEKT 577
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345484325|ref|XP_001603180.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/574 (62%), Positives = 403/574 (70%), Gaps = 113/574 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
ERI L+DKLK +Y+ ++ AK EI VTLPDGK VPA+SWRTTPY+VA GIS+GLAD+T+
Sbjct: 41 ERIALFDKLKAEYEADLQAKPSTEITVTLPDGKEVPAQSWRTTPYEVAKGISQGLADNTV 100
Query: 249 IAK------DWTRA---------------------------------NKSRGNELC---- 265
IAK D R + G LC
Sbjct: 101 IAKVNNELWDLDRPLEKDCKLQLLKFDDPEAQAVFWHSSAHILGEALERVYGGCLCYGPP 160
Query: 266 -ESSQYFSL-------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKL 317
E+ Y+ + +S DFP +E L K+IVK+KQ FERLEMKKEDL+EMFK
Sbjct: 161 IENGFYYDMFMGQDKGISQEDFPYLESLFKNIVKDKQSFERLEMKKEDLLEMFK------ 214
Query: 318 RILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTT 377
YN FK+RILKEKV TPTT
Sbjct: 215 ------------------------------------------YNEFKVRILKEKVQTPTT 232
Query: 378 TAYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLK 423
T YRCGPLIDLCRGPH +SS YWEG A+AE+LQRVYGISFPD+KQLK
Sbjct: 233 TVYRCGPLIDLCRGPHVRNTGKIKAAKITKSSSAYWEGNANAETLQRVYGISFPDSKQLK 292
Query: 424 EWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGF 483
EWEK QEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA IYNTLVEFIR EY+KRGF
Sbjct: 293 EWEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAHIYNTLVEFIRGEYKKRGF 352
Query: 484 QEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543
QEVV+PN+YN KLWQTSGHW HYSENMFSFDVE ET+ALKPMNCPGHC+IFD R RSWRE
Sbjct: 353 QEVVTPNIYNSKLWQTSGHWQHYSENMFSFDVEKETFALKPMNCPGHCMIFDVRNRSWRE 412
Query: 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSI 603
LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT EQI DE++GALDFL +VYS+
Sbjct: 413 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTSEQIKDEMLGALDFLDHVYSV 472
Query: 604 FGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT 663
FGFTFNL LSTRPEK+LGE+ VW+ AEK L SL++FG+PWT NPGDGAFYGPKIDITI
Sbjct: 473 FGFTFNLCLSTRPEKFLGEVAVWDAAEKALSESLDAFGKPWTLNPGDGAFYGPKIDITIM 532
Query: 664 DALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697
DALKR HQCATIQLDFQLPIRFNL YV +T
Sbjct: 533 DALKRAHQCATIQLDFQLPIRFNLNYVNETGEKT 566
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169877|gb|EFN62386.1| Threonyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/566 (62%), Positives = 402/566 (71%), Gaps = 112/566 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+R+ LWDKLKK+Y+ ++A K P +I VTLPDGK V A+SWRTTPY+VA IS+GLAD+T+
Sbjct: 26 DRLVLWDKLKKKYEADLARKTPVDITVTLPDGKEVSAQSWRTTPYEVAKNISQGLADNTV 85
Query: 249 IAK------DWTR---------------------------------ANKSRGNELC---- 265
IAK D R + G LC
Sbjct: 86 IAKVNNELWDLDRPLEYDCKLQLLKFDDAEGRQVFWHSSAHILGEAMERIYGGCLCYGPP 145
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S DFP +E + K+I KEKQPFERL M K+DL+EMFK
Sbjct: 146 IENGFYYDMYIGDKGISNTDFPYLENMYKNIAKEKQPFERLVMTKKDLMEMFK------- 198
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RI+ EK++TPTTT
Sbjct: 199 -----------------------------------------YNEFKIRIIAEKIHTPTTT 217
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
Y+CGPLIDLCRGPH NSSTYWEG A+AESLQR+YGISFPD KQLKE
Sbjct: 218 VYKCGPLIDLCRGPHVRHTGKIKALKITKNSSTYWEGNANAESLQRIYGISFPDTKQLKE 277
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA+IYNTLVEFIRSEYRKRGFQ
Sbjct: 278 WEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQ 337
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EV+SPN+YN KLWQTSGHW HY+ENMFSFDVE ET+ALKPMNCPGHC+IFD R RSWREL
Sbjct: 338 EVISPNIYNSKLWQTSGHWQHYAENMFSFDVEKETFALKPMNCPGHCMIFDVRCRSWREL 397
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC+VEQI DE++ AL+FLR+VY IF
Sbjct: 398 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSVEQIKDEMIAALEFLRHVYGIF 457
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTFNL LSTRPEKYLG L+VW++AEK LE SLN+FG+PWT NP DGAFYGPKIDIT+ D
Sbjct: 458 GFTFNLCLSTRPEKYLGSLKVWDRAEKALEESLNAFGQPWTLNPQDGAFYGPKIDITLMD 517
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYV 690
ALKR HQ ATIQLDFQLP+RFNL+YV
Sbjct: 518 ALKRAHQTATIQLDFQLPMRFNLSYV 543
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328778641|ref|XP_395662.3| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/573 (61%), Positives = 405/573 (70%), Gaps = 112/573 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+RI LWDKLK +Y+E +A+K +I+V LPDGK + A+SW TTPY++A IS+GLAD+TI
Sbjct: 55 DRIILWDKLKAEYEESLASKSMTDIKVILPDGKEIIAQSWHTTPYEIAKNISQGLADNTI 114
Query: 249 IAK------DWTR---------------------------------ANKSRGNELC---- 265
IAK D R + G LC
Sbjct: 115 IAKVNNELWDLDRPLEFNCKLELLKFDHPDAQQVFWHSSAHILGETMERVYGGCLCYGPP 174
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S LDFP +E L K IVK+KQPFERLEM KEDL+EMFK
Sbjct: 175 IENGFYYDMYLDDKGISNLDFPFLESLYKSIVKDKQPFERLEMTKEDLLEMFK------- 227
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RI+ EK++TPTTT
Sbjct: 228 -----------------------------------------YNEFKIRIINEKIHTPTTT 246
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
YRCGPLIDLCRGPH NSSTYWEG A+AESLQRVYGISFPD KQLKE
Sbjct: 247 VYRCGPLIDLCRGPHIRHTGKVKAIKITKNSSTYWEGNANAESLQRVYGISFPDTKQLKE 306
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA+IYNTLVEFIRSEYRKRGFQ
Sbjct: 307 WEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQ 366
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EVV+PN+YN KLWQTSGHW HY+ENMFSFDVE ET+ALKPMNCPGHC+IFD R RSWREL
Sbjct: 367 EVVTPNIYNNKLWQTSGHWLHYAENMFSFDVEKETFALKPMNCPGHCMIFDVRNRSWREL 426
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNE+SGALTGLTRVRRFQQDDAHIFC+V+QI DE++GAL+FL++VYS+F
Sbjct: 427 PLRMADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCSVDQIKDEMIGALEFLKHVYSVF 486
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTFNL LSTRPEKYLG+LE+WN+AEK L SL++FGE W NP DGAFYGPKIDITI D
Sbjct: 487 GFTFNLCLSTRPEKYLGDLEMWNQAEKALAESLDAFGEQWKINPEDGAFYGPKIDITIMD 546
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697
ALKR HQCATIQLDFQLPIRFNL+YV +T
Sbjct: 547 ALKRAHQCATIQLDFQLPIRFNLSYVNEAGEKT 579
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242024338|ref|XP_002432585.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus corporis] gi|212518045|gb|EEB19847.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/566 (62%), Positives = 399/566 (70%), Gaps = 112/566 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
ER LW+KLK Y+ EIA+K I++TLPDGKIV +SW+T+PYD+A GIS+GLAD+T+
Sbjct: 54 ERNVLWNKLKTAYEAEIASKTSNPIKITLPDGKIVEGESWKTSPYDIAKGISQGLADNTV 113
Query: 249 IAK------DWTRANKS---------------------------------RGNELC---- 265
IAK D R +S G LC
Sbjct: 114 IAKVNGVLWDLERPLESDCKLQLLKFDDEEAQQVFWHSTAHILGEALERLYGGHLCYGPP 173
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + VS DFP +E LMK IVKEKQPFERLEMKKEDL+EMFK
Sbjct: 174 IENGFYYDMFTPDSQVSNTDFPSIESLMKKIVKEKQPFERLEMKKEDLLEMFK------- 226
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RIL EK+NTPTTT
Sbjct: 227 -----------------------------------------YNHFKVRILNEKINTPTTT 245
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
Y+CG LIDLCRGPH NSS YWEG ++AESLQRVYGISFPD KQLKE
Sbjct: 246 VYKCGSLIDLCRGPHVRNTGKIKAFKITKNSSAYWEGNSEAESLQRVYGISFPDPKQLKE 305
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WE++QEEAAKRDHRK+GREQEL+FFHELSPGSCFF PKGAFIYNTLVEFIRSEYRKRGFQ
Sbjct: 306 WERIQEEAAKRDHRKLGREQELYFFHELSPGSCFFYPKGAFIYNTLVEFIRSEYRKRGFQ 365
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EV++PN+YNVKLW+TSGHW HY+ENMFSF++E ETYALKPMNCPGHCLIFD+R RSWREL
Sbjct: 366 EVITPNIYNVKLWETSGHWQHYAENMFSFELEKETYALKPMNCPGHCLIFDNRNRSWREL 425
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNE SGAL+GLTRVRRFQQDDAHIFCTV QI EI GAL+FL+NVY +F
Sbjct: 426 PLRMADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTVNQIKSEISGALEFLKNVYGVF 485
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTF LRLSTRPEKYLGE+ VW++AEKQL SL+ FG PW NPGDGAFYGPKIDITI D
Sbjct: 486 GFTFQLRLSTRPEKYLGEINVWDQAEKQLTESLDEFGFPWKLNPGDGAFYGPKIDITILD 545
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYV 690
ALKR HQCATIQLDFQLPIRFNL Y+
Sbjct: 546 ALKRAHQCATIQLDFQLPIRFNLNYI 571
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350413351|ref|XP_003489967.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/573 (61%), Positives = 404/573 (70%), Gaps = 112/573 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+RI LWDKLK +Y+ +A K +I+VTLPDGK V A+SWRTTPY++A IS+GLADST+
Sbjct: 27 DRIALWDKLKAEYETSLALKTVTDIKVTLPDGKEVIAQSWRTTPYEIAKNISQGLADSTV 86
Query: 249 IAK------DWTRANKSR---------------------------------GNELC---- 265
IAK D R +S G LC
Sbjct: 87 IAKVNNELWDLDRPLESDCKLELLKFDHPDGQQVFWHSSAHILGEAMERVYGGCLCYGPP 146
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S LDFP +E L K I K+KQPFERLEM KEDL+EMFK
Sbjct: 147 IENGFYYDMYVGETGISNLDFPFLETLYKKIAKDKQPFERLEMTKEDLLEMFK------- 199
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RI+ EK++TPTTT
Sbjct: 200 -----------------------------------------YNEFKVRIINEKIHTPTTT 218
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
YRCGPLIDLCRGPH SSTYWEG +AESLQR+YGISFPD KQLKE
Sbjct: 219 VYRCGPLIDLCRGPHVRHTGKVKAIKITKGSSTYWEGNVNAESLQRIYGISFPDTKQLKE 278
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAAKRDHRKIG+EQELFFFHELSPGSCFFQP+GA IYNTLVEFIRSEYRKRGFQ
Sbjct: 279 WEKFQEEAAKRDHRKIGKEQELFFFHELSPGSCFFQPRGAHIYNTLVEFIRSEYRKRGFQ 338
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EVV+PN+YN KLWQTSGHW HY+ENMFSFDVE ET+ALKPMNCPGHC+IFD R+RSWREL
Sbjct: 339 EVVTPNIYNSKLWQTSGHWQHYAENMFSFDVEKETFALKPMNCPGHCMIFDVRIRSWREL 398
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
PLRMADFGVLHRNE+SGALTGLTRVRRFQQDDAHIFC+V+QI DE++GALDFLR+VYS+F
Sbjct: 399 PLRMADFGVLHRNEISGALTGLTRVRRFQQDDAHIFCSVDQIKDEMIGALDFLRHVYSVF 458
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTFNL LSTRPEKY+G++E+W++AEK L SL++FGEPW NP DGAFYGPKIDITI D
Sbjct: 459 GFTFNLCLSTRPEKYMGDIEMWDQAEKALAESLDAFGEPWKLNPEDGAFYGPKIDITIMD 518
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697
ALKR HQCATIQLDFQLPIRFNL+Y+ +T
Sbjct: 519 ALKRHHQCATIQLDFQLPIRFNLSYINESGERT 551
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332030887|gb|EGI70523.1| Threonyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/573 (61%), Positives = 403/573 (70%), Gaps = 112/573 (19%)
Query: 189 ERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTI 248
+RI LWDKLKKQY+E IAAK I VTLPD K + A+SWRTTPYDVA IS+GLAD+T+
Sbjct: 52 DRIVLWDKLKKQYEETIAAKTSMNITVTLPDEKNISAQSWRTTPYDVAKSISQGLADNTV 111
Query: 249 IAK------DWTR---------------------------------ANKSRGNELC---- 265
IAK D R + G LC
Sbjct: 112 IAKVNNELWDLDRPLEFDCKLQLLKFDDVEGQQVFWHSSAHVLGEAMERVYGGCLCYGPP 171
Query: 266 -ESSQYFSL------VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLR 318
E+ Y+ + +S DFP +EGL K+IVKEKQPFERLEM KEDL+EMFK
Sbjct: 172 IENGFYYDMYLGDKGISNTDFPYLEGLYKNIVKEKQPFERLEMTKEDLLEMFK------- 224
Query: 319 ILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTT 378
YN FK+RI+ E++ TPTTT
Sbjct: 225 -----------------------------------------YNEFKVRIINERIQTPTTT 243
Query: 379 AYRCGPLIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNKQLKE 424
AYRCGPLIDLCRGPH NSSTYWEG +AESLQR+YGISFPD KQLKE
Sbjct: 244 AYRCGPLIDLCRGPHVRHTGKIKAMKITKNSSTYWEGNVNAESLQRLYGISFPDTKQLKE 303
Query: 425 WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQ 484
WEK QEEAAKRDHRKIG+EQEL+FFHELSPGSCFFQP+GA+IYNTLV+FIRSEYRKRGFQ
Sbjct: 304 WEKFQEEAAKRDHRKIGKEQELYFFHELSPGSCFFQPRGAYIYNTLVDFIRSEYRKRGFQ 363
Query: 485 EVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544
EVV+PN++N KLWQTSGHW HY+ENMFSFDVE ET+ALKPMNCPGHC+IFD R RSWREL
Sbjct: 364 EVVTPNIFNSKLWQTSGHWQHYAENMFSFDVEKETFALKPMNCPGHCMIFDVRCRSWREL 423
Query: 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
P+R ADFGVLHRNELSGALTGL RVRRFQQDDAHIFC+++QI DEI GALDFL +VYSI
Sbjct: 424 PIRFADFGVLHRNELSGALTGLIRVRRFQQDDAHIFCSIDQIKDEINGALDFLWHVYSIL 483
Query: 605 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 664
GFTF+L LSTRPEK+LG+++VWN+AEK LE SLN+FG+PW+ NP DGAFYGPKID+TI D
Sbjct: 484 GFTFSLCLSTRPEKFLGDIKVWNEAEKALEESLNAFGQPWSLNPEDGAFYGPKIDVTILD 543
Query: 665 ALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697
ALKRPHQ ATIQLDFQLPIRFNL+YV +T
Sbjct: 544 ALKRPHQTATIQLDFQLPIRFNLSYVNEAGEKT 576
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| UNIPROTKB|E2RHW7 | 723 | TARS "Uncharacterized protein" | 0.467 | 0.461 | 0.767 | 6.3e-179 | |
| MGI|MGI:106314 | 722 | Tars "threonyl-tRNA synthetase | 0.467 | 0.462 | 0.758 | 1.3e-178 | |
| RGD|1359527 | 695 | Tars "threonyl-tRNA synthetase | 0.467 | 0.480 | 0.758 | 1.3e-178 | |
| UNIPROTKB|Q5XHY5 | 695 | Tars "Threonine--tRNA ligase, | 0.467 | 0.480 | 0.758 | 1.3e-178 | |
| UNIPROTKB|Q3ZBV8 | 723 | TARS "Threonine--tRNA ligase, | 0.467 | 0.461 | 0.761 | 1.9e-177 | |
| ZFIN|ZDB-GENE-041010-218 | 718 | tars "threonyl-tRNA synthetase | 0.467 | 0.465 | 0.758 | 8.3e-177 | |
| UNIPROTKB|P26639 | 723 | TARS "Threonine--tRNA ligase, | 0.467 | 0.461 | 0.752 | 1.1e-176 | |
| UNIPROTKB|G3XAN9 | 619 | TARS "Threonyl-tRNA synthetase | 0.467 | 0.539 | 0.752 | 1.1e-176 | |
| UNIPROTKB|F1SP18 | 620 | TARS "Uncharacterized protein" | 0.464 | 0.535 | 0.760 | 1.3e-176 | |
| UNIPROTKB|F1P372 | 673 | TARSL2 "Uncharacterized protei | 0.464 | 0.493 | 0.739 | 2e-173 |
| UNIPROTKB|E2RHW7 TARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1435 (510.2 bits), Expect = 6.3e-179, Sum P(2) = 6.3e-179
Identities = 267/348 (76%), Positives = 288/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 231 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKAD 290
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 291 METLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 350
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL+EFIRSEYRKRGFQEVV+PN+YN +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 351 YIYNTLIEFIRSEYRKRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEKELFALKP 410
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 411 MNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAIE 470
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYSIFGF+F L LSTRPEKYLG++EVWN+AEKQLE SLN FGE W
Sbjct: 471 QIEDEIKGCLDFLRTVYSIFGFSFKLNLSTRPEKYLGDIEVWNQAEKQLENSLNEFGEKW 530
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
NPGDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL +V +
Sbjct: 531 ELNPGDGAFYGPKIDIQIKDAIGRFHQCATIQLDFQLPIRFNLTFVSH 578
|
|
| MGI|MGI:106314 Tars "threonyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1427 (507.4 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 264/348 (75%), Positives = 288/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 230 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKAD 289
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 290 METLQRIYGISFPDPKLLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 349
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL+EFIRSEYRKRGFQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 350 YIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFALKP 409
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 410 MNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 469
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYS+FGF+F L LSTRPEK+LG++E+WN+AEKQLE SLN FGE W
Sbjct: 470 QIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKW 529
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
NPGDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 530 ELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSH 577
|
|
| RGD|1359527 Tars "threonyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1427 (507.4 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 264/348 (75%), Positives = 288/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 203 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKAD 262
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 263 METLQRIYGISFPDPKLLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 322
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL+EFIRSEYRKRGFQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 323 YIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFALKP 382
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 383 MNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 442
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYS+FGF+F L LSTRPEK+LG++E+WN+AEKQLE SLN FGE W
Sbjct: 443 QIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKW 502
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
NPGDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 503 ELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSH 550
|
|
| UNIPROTKB|Q5XHY5 Tars "Threonine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1427 (507.4 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 264/348 (75%), Positives = 288/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 203 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKAD 262
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 263 METLQRIYGISFPDPKLLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 322
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL+EFIRSEYRKRGFQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 323 YIYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFALKP 382
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 383 MNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 442
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYS+FGF+F L LSTRPEK+LG++E+WN+AEKQLE SLN FGE W
Sbjct: 443 QIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKW 502
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
NPGDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 503 ELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSH 550
|
|
| UNIPROTKB|Q3ZBV8 TARS "Threonine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1425 (506.7 bits), Expect = 1.9e-177, Sum P(2) = 1.9e-177
Identities = 265/348 (76%), Positives = 288/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGK+D
Sbjct: 231 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKSD 290
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 291 METLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 350
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL+EFIRSEYRKRGFQEVV+PN+YN +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 351 YIYNTLIEFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWEHYSENMFSFEVEKELFALKP 410
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 411 MNCPGHCLMFDHRPRSWRELPLRVADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 470
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYSIFGF+F L LSTRPEK+LG++EVWN+AEKQLE SLN FGE W
Sbjct: 471 QIEDEIKGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGDIEVWNQAEKQLENSLNDFGEKW 530
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
NPGDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL +V +
Sbjct: 531 ELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSH 578
|
|
| ZFIN|ZDB-GENE-041010-218 tars "threonyl-tRNA synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 8.3e-177, Sum P(2) = 8.3e-177
Identities = 264/348 (75%), Positives = 286/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKV TPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 226 KYNKFKCRILNEKVTTPTTTVYRCGPLIDLCRGPHVRHTGKIKAMKIHKNSSTYWEGKAD 285
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
ESLQR+YGISFPD RDHRK+GREQ+LFFFH+LSPGSCFF PKGA
Sbjct: 286 MESLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKLGREQDLFFFHDLSPGSCFFLPKGA 345
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL+EFIRSEYRKRGFQEVV+PN+YN KLWQTSGHW HYSENMFSF+VE E +ALKP
Sbjct: 346 YIYNTLIEFIRSEYRKRGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEKEIFALKP 405
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC+++
Sbjct: 406 MNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSMD 465
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI EI G LDFLR VY +FGFTF L LSTRPEK+LGE EVW++AEKQLE SLN FGE W
Sbjct: 466 QIESEIKGCLDFLRTVYDVFGFTFKLNLSTRPEKFLGEPEVWDQAEKQLENSLNDFGEKW 525
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
NPGDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL +V +
Sbjct: 526 VLNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSH 573
|
|
| UNIPROTKB|P26639 TARS "Threonine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1412 (502.1 bits), Expect = 1.1e-176, Sum P(2) = 1.1e-176
Identities = 262/348 (75%), Positives = 286/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 231 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKAD 290
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 291 METLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 350
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYN L+EFIRSEYRKRGFQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 351 YIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKP 410
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 411 MNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 470
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYS+FGF+F L LSTRPEK+LG++EVW++AEKQLE SLN FGE W
Sbjct: 471 QIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKW 530
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
N GDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 531 ELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSH 578
|
|
| UNIPROTKB|G3XAN9 TARS "Threonyl-tRNA synthetase, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1412 (502.1 bits), Expect = 1.1e-176, Sum P(2) = 1.1e-176
Identities = 262/348 (75%), Positives = 286/348 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 127 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKAD 186
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 187 METLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 246
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYN L+EFIRSEYRKRGFQEVV+PN++N +LW TSGHW HYSENMFSF+VE E +ALKP
Sbjct: 247 YIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKP 306
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 307 MNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 366
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYS+FGF+F L LSTRPEK+LG++EVW++AEKQLE SLN FGE W
Sbjct: 367 QIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKW 426
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692
N GDGAFYGPKIDI I DA+ R HQCATIQLDFQLPIRFNL YV +
Sbjct: 427 ELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSH 474
|
|
| UNIPROTKB|F1SP18 TARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1414 (502.8 bits), Expect = 1.3e-176, Sum P(2) = 1.3e-176
Identities = 263/346 (76%), Positives = 286/346 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 128 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKAD 187
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPD RDHRKIGR+QEL+FFHELSPGSCFF PKGA
Sbjct: 188 METLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA 247
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
+IYNTL++FIRSEYRKRGFQEVV+PN+YN +LW TSGHW HYS+NMFSF+VE E +ALKP
Sbjct: 248 YIYNTLIDFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWQHYSDNMFSFEVEKELFALKP 307
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+FDHR RSWRELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC +E
Sbjct: 308 MNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAME 367
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI DEI G LDFLR VYSIFGF+F L LSTRPEK+LG++EVWN+AEKQLE SLN FGE W
Sbjct: 368 QIEDEIKGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKW 427
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
NPGDGAFYGPKIDI I DA+ R HQCATIQLD QLPIRFNL +V
Sbjct: 428 ELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDXQLPIRFNLTFV 473
|
|
| UNIPROTKB|F1P372 TARSL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1393 (495.4 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
Identities = 256/346 (73%), Positives = 284/346 (82%)
Query: 359 KYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH--------------NSSTYWEGKAD 404
KYN FK RIL EKVNTPTTT YRCGPLIDLCRGPH NSSTYWEGKAD
Sbjct: 181 KYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIFKNSSTYWEGKAD 240
Query: 405 AESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHELSPGSCFFQPKGA 464
E+LQR+YGISFPDN RDHRKIG+EQELFFFH+LSPGSCFF P+GA
Sbjct: 241 METLQRIYGISFPDNKMMKEWEKFQEEARNRDHRKIGKEQELFFFHDLSPGSCFFLPRGA 300
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
F+YNTL +FIR EY +R F EVVSPN++N KLW+TSGHW HYSENMFSF++E ET+ALKP
Sbjct: 301 FLYNTLTDFIREEYHRRNFTEVVSPNIFNSKLWETSGHWQHYSENMFSFEIEKETFALKP 360
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
MNCPGHCL+F HR RSWRE+PLR+ADFGVLHRNELSG L+GLTRVRRFQQDDAHI+CT+E
Sbjct: 361 MNCPGHCLMFAHRPRSWREMPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIYCTIE 420
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644
QI +EI G LDFL++VYSIFGFTF L LSTRPE YLGELE+W+ AEKQL+ SL++FG W
Sbjct: 421 QIEEEIKGCLDFLKSVYSIFGFTFQLHLSTRPENYLGELEIWDHAEKQLQNSLDNFGVQW 480
Query: 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
T NPGDGAFYGPKIDI I DAL R HQCATIQLDFQLPIRFNL YV
Sbjct: 481 TLNPGDGAFYGPKIDIKIKDALGRYHQCATIQLDFQLPIRFNLTYV 526
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0BA34 | SYT_CHLTB | 6, ., 1, ., 1, ., 3 | 0.3869 | 0.6153 | 0.6929 | yes | N/A |
| Q9D0R2 | SYTC_MOUSE | 6, ., 1, ., 1, ., 3 | 0.6 | 0.6363 | 0.6301 | yes | N/A |
| B0B8F5 | SYT_CHLT2 | 6, ., 1, ., 1, ., 3 | 0.3869 | 0.6153 | 0.6929 | yes | N/A |
| Q5XHY5 | SYTC_RAT | 6, ., 1, ., 1, ., 3 | 0.6 | 0.6363 | 0.6546 | yes | N/A |
| Q3ZBV8 | SYTC_BOVIN | 6, ., 1, ., 1, ., 3 | 0.6 | 0.6363 | 0.6293 | yes | N/A |
| B8FN26 | SYT_DESAA | 6, ., 1, ., 1, ., 3 | 0.4023 | 0.6531 | 0.7342 | yes | N/A |
| P87144 | SYTC_SCHPO | 6, ., 1, ., 1, ., 3 | 0.4947 | 0.6335 | 0.6443 | yes | N/A |
| Q8SRH2 | SYTC_ENCCU | 6, ., 1, ., 1, ., 3 | 0.5240 | 0.5300 | 0.5921 | yes | N/A |
| O04630 | SYTM_ARATH | 6, ., 1, ., 1, ., 3 | 0.4821 | 0.6629 | 0.6685 | yes | N/A |
| O84585 | SYT_CHLTR | 6, ., 1, ., 1, ., 3 | 0.3890 | 0.6153 | 0.6929 | yes | N/A |
| Q9PJF9 | SYT_CHLMU | 6, ., 1, ., 1, ., 3 | 0.3828 | 0.6153 | 0.6929 | yes | N/A |
| P04801 | SYTC_YEAST | 6, ., 1, ., 1, ., 3 | 0.4847 | 0.6825 | 0.6648 | yes | N/A |
| Q54J66 | SYTC1_DICDI | 6, ., 1, ., 1, ., 3 | 0.4757 | 0.6503 | 0.6549 | yes | N/A |
| Q3KLB6 | SYT_CHLTA | 6, ., 1, ., 1, ., 3 | 0.3890 | 0.6153 | 0.6929 | yes | N/A |
| P52709 | SYTC_CAEEL | 6, ., 1, ., 1, ., 3 | 0.5459 | 0.6335 | 0.6248 | yes | N/A |
| P26639 | SYTC_HUMAN | 6, ., 1, ., 1, ., 3 | 0.5912 | 0.6363 | 0.6293 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.1.1.3 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 715 | |||
| PLN02908 | 686 | PLN02908, PLN02908, threonyl-tRNA synthetase | 0.0 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 0.0 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 1e-178 | |
| COG0441 | 589 | COG0441, ThrS, Threonyl-tRNA synthetase [Translati | 1e-163 | |
| TIGR00418 | 563 | TIGR00418, thrS, threonyl-tRNA synthetase | 1e-158 | |
| cd00771 | 298 | cd00771, ThrRS_core, Threonyl-tRNA synthetase (Thr | 1e-157 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 1e-149 | |
| PLN02837 | 614 | PLN02837, PLN02837, threonine-tRNA ligase | 1e-98 | |
| PRK14799 | 545 | PRK14799, thrS, threonyl-tRNA synthetase; Provisio | 6e-80 | |
| pfam00587 | 171 | pfam00587, tRNA-synt_2b, tRNA synthetase class II | 2e-48 | |
| PLN02908 | 686 | PLN02908, PLN02908, threonyl-tRNA synthetase | 2e-38 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 8e-28 | |
| cd01667 | 61 | cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threony | 2e-22 | |
| cd00670 | 235 | cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro | 3e-20 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 1e-17 | |
| PLN02908 | 686 | PLN02908, PLN02908, threonyl-tRNA synthetase | 5e-15 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 5e-15 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 9e-15 | |
| COG0441 | 589 | COG0441, ThrS, Threonyl-tRNA synthetase [Translati | 5e-10 | |
| PRK03991 | 613 | PRK03991, PRK03991, threonyl-tRNA synthetase; Vali | 7e-10 | |
| cd01667 | 61 | cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threony | 4e-09 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 1e-08 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 2e-08 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 3e-08 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 2e-07 | |
| TIGR00418 | 563 | TIGR00418, thrS, threonyl-tRNA synthetase | 5e-07 | |
| TIGR00409 | 568 | TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa | 7e-07 | |
| COG0172 | 429 | COG0172, SerS, Seryl-tRNA synthetase [Translation, | 4e-06 | |
| cd00779 | 255 | cd00779, ProRS_core_prok, Prolyl-tRNA synthetase ( | 1e-05 | |
| TIGR00414 | 418 | TIGR00414, serS, seryl-tRNA synthetase | 2e-05 | |
| COG0442 | 500 | COG0442, ProS, Prolyl-tRNA synthetase [Translation | 3e-05 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 5e-04 | |
| cd00772 | 264 | cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS | 5e-04 | |
| PLN02837 | 614 | PLN02837, PLN02837, threonine-tRNA ligase | 0.001 | |
| cd00770 | 297 | cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) | 0.002 |
| >gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 667 bits (1723), Expect = 0.0
Identities = 253/413 (61%), Positives = 303/413 (73%), Gaps = 34/413 (8%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL 337
DF +E + VKEKQPFER+E+ +E+ +EMF N FK+ I+ + T T YRCGPL
Sbjct: 169 DFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPL 228
Query: 338 IDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSST 397
+DLCRGPH+ +T +KAF K SS
Sbjct: 229 VDLCRGPHIPNTSFVKAFACLKA----------------------------------SSA 254
Query: 398 YWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSC 457
YW G D ESLQRVYGISFPD K LKE++ EEA KRDHR +G++QELFFFHELSPGSC
Sbjct: 255 YWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSC 314
Query: 458 FFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVEN 517
FF P GA IYN L++FIR +Y +RG+ EV++PN+YN+ LW+TSGH AHY ENMF F++E
Sbjct: 315 FFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEK 374
Query: 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDA 577
+ + LKPMNCPGHCL+F HRVRS+RELPLR+ADFGVLHRNELSGALTGLTRVRRFQQDDA
Sbjct: 375 QEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 434
Query: 578 HIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL 637
HIFC +QI DE+ G LDFL VY +FGFT+ L+LSTRPEKYLG+LE W+KAE L +L
Sbjct: 435 HIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEAL 494
Query: 638 NSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
N+FG+PW N GDGAFYGPKIDIT++DALKR QCAT+QLDFQLPIRF L+Y
Sbjct: 495 NAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYS 547
|
Length = 686 |
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 567 bits (1465), Expect = 0.0
Identities = 196/417 (47%), Positives = 259/417 (62%), Gaps = 38/417 (9%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCG 335
D +E MK+I+KE P ER + +E+ IE+FK P+K+ +++E + YR G
Sbjct: 116 DLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQG 175
Query: 336 PLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNS 395
+DLCRGPHV TGKIKAFK+ K +
Sbjct: 176 EFVDLCRGPHVPSTGKIKAFKLLKV----------------------------------A 201
Query: 396 STYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPG 455
YW G + + LQR+YG +F D K+L + EEA KRDHRK+G+E +LF F E +PG
Sbjct: 202 GAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPG 261
Query: 456 SCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF-SFD 514
F+ PKG I L +IR + RK G+QEV +P + + +LW+TSGHW HY ENMF + +
Sbjct: 262 LPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTE 321
Query: 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ 574
+ E YALKPMNCPGH I+ +RS+R+LPLR+A+FG +HR E SGAL GL RVR F Q
Sbjct: 322 SDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQ 381
Query: 575 DDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQL 633
DDAHIFCT EQI +E+ +D + +VY FGF + ++LSTRPEK +G E+W+KAE L
Sbjct: 382 DDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAAL 441
Query: 634 EASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
+ +L+ G + PG+GAFYGPKID + DAL R QC TIQLDF LP RF+L YV
Sbjct: 442 KEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLPERFDLTYV 498
|
Length = 638 |
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 520 bits (1342), Expect = e-178
Identities = 190/421 (45%), Positives = 251/421 (59%), Gaps = 39/421 (9%)
Query: 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYR 333
+ D +E MK I+K PFER E+ +E+ E F P+KL ++ + T Y
Sbjct: 50 FTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEFANEPYKLELIDDIPE-EGITIYD 108
Query: 334 CGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH 393
G DLCRGPHV +T IKAFK+T
Sbjct: 109 NGDFEDLCRGPHVPNTKFIKAFKLTS---------------------------------- 134
Query: 394 NSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFH-EL 452
+ YW G LQR+YG ++ ++LKE+ K EEA KRDHRK+G+E +LF F E+
Sbjct: 135 VAGAYWRGDEKNPQLQRIYGTAWETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEI 194
Query: 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512
PG + PKGA I + +++R E+ KRG++ V +P++ LW+TSGH +Y ENMF
Sbjct: 195 GPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFP 254
Query: 513 F-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571
+++ E Y LKPMNCPGH LI+ R+RS+R+LPLR+A+FG ++R E SG L GLTRVR
Sbjct: 255 PMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRG 314
Query: 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTR-PEKYLGELEVWNKA 629
F QDDAHIFCT +QI DEI+ LDF+ + FGF + L LSTR PEKY+G+ EVW KA
Sbjct: 315 FTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKA 374
Query: 630 EKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAY 689
+ L +L G + E+PG AFYGPKID+ I DAL R Q +TIQLDF LP RF+L Y
Sbjct: 375 TEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEY 434
Query: 690 V 690
Sbjct: 435 T 435
|
Length = 575 |
| >gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 483 bits (1246), Expect = e-163
Identities = 192/420 (45%), Positives = 255/420 (60%), Gaps = 42/420 (10%)
Query: 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYR 333
++ D +E MK+I KE P ER + +E+ F P+K ++ K + + Y
Sbjct: 68 ITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCKGHPLS--EYS 123
Query: 334 CGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH 393
G +DLCRGPHV TGKI AFK+ K
Sbjct: 124 QGEFVDLCRGPHVPSTGKI-AFKLLK---------------------------------- 148
Query: 394 NSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFH-EL 452
+ YW G + E LQR+YG +F D K+L+ + K EEA KRDHRK+G+E +LF F E
Sbjct: 149 LAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEE 208
Query: 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512
PG F+ PKGA I N L +++R++ R G+QEV +P + +++LW+ SGHW +Y E+MF
Sbjct: 209 GPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFL 268
Query: 513 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRF 572
+ ++ YALKPMNCPGH LIF +RS+RELPLR+A+FG ++R E SGAL GL RVR F
Sbjct: 269 TESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGF 328
Query: 573 QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEK 631
QDDAHIFCT +QI DE G L+ + VY FGFT + ++LSTRP K++G E+W+KAE
Sbjct: 329 TQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMWDKAEA 387
Query: 632 QLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVK 691
L +L G + E PG+GAFYGPKID + DAL R Q TIQLDF LP RF+L YV
Sbjct: 388 ALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVD 447
|
Length = 589 |
| >gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 468 bits (1206), Expect = e-158
Identities = 191/423 (45%), Positives = 251/423 (59%), Gaps = 40/423 (9%)
Query: 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFK-YNPFKLRILKEKVNTPTTTAY 332
+ D +E MK+I K+ P +L + E+ +E FK P+KL +L E N T Y
Sbjct: 41 FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKVLEPYKLELLDEIPNGVKRTPY 100
Query: 333 RCG-PLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 391
G +DLC+GPH+ +T IKAFK+ K
Sbjct: 101 GWGKAFVDLCKGPHLPNTSFIKAFKLEK-------------------------------- 128
Query: 392 PHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE 451
+ YW G + + LQR+YG ++ D KQL + EEA KRDHRK+G+E ELF F
Sbjct: 129 --VAGAYWRGDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEP 186
Query: 452 LS-PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENM 510
PG F+ PKGA I N L +F+R + K G+ EV +P +Y+++LW+ SGHW +Y E M
Sbjct: 187 EIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERM 246
Query: 511 FSF-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRV 569
F F +++N + LKPMNCPGH LIF +RS+R+LPLR+A+ G HR E SG L GL RV
Sbjct: 247 FPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRV 306
Query: 570 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN-LRLSTR-PEKYLGELEVWN 627
R F QDDAHIFCT +QI +E ++ VYS FGF+F+ LSTR PE ++GE E+W
Sbjct: 307 RGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWE 366
Query: 628 KAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNL 687
KAE LE +L G P+ +PG GAFYGPKID DAL R QCAT+QLDF+LP RF+L
Sbjct: 367 KAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCATVQLDFELPERFDL 426
Query: 688 AYV 690
YV
Sbjct: 427 TYV 429
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether. [Protein synthesis, tRNA aminoacylation]. Length = 563 |
| >gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 456 bits (1176), Expect = e-157
Identities = 151/257 (58%), Positives = 183/257 (71%), Gaps = 1/257 (0%)
Query: 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
R G + FFF E PG F+ PKGA I N L +F+R RKRG+QEV +P +YN
Sbjct: 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNK 60
Query: 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 554
+LW+TSGHW HY ENMF F+ E+E Y LKPMNCPGHCLIF + RS+R+LPLR+A+FG +
Sbjct: 61 ELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTV 120
Query: 555 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613
HR E SGAL GLTRVR F QDDAHIFCT +QI +EI G LD ++ VYS FGF + + LS
Sbjct: 121 HRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELS 180
Query: 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
TRPEK++G EVW KAE L +L G P+ N G+GAFYGPKID + DAL R QC+
Sbjct: 181 TRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCS 240
Query: 674 TIQLDFQLPIRFNLAYV 690
TIQLDF LP RF+L Y+
Sbjct: 241 TIQLDFNLPERFDLTYI 257
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. Length = 298 |
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 448 bits (1154), Expect = e-149
Identities = 186/419 (44%), Positives = 259/419 (61%), Gaps = 36/419 (8%)
Query: 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYN--PFKLRILKEKVNTPTTTA 331
V+ D +E MK I+ E ER+E+ +E+ ++F+ KL +L+ + + T
Sbjct: 116 VNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITL 175
Query: 332 YRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 391
Y+ G +DLCRGPH+ TG +KAF++T
Sbjct: 176 YKQGEFVDLCRGPHLPSTGYLKAFQLT--------------------------------- 202
Query: 392 PHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE 451
H S YW G ++ + LQR+YG++F K+L+E+ EEAAKR+HRK+G+E ELF F E
Sbjct: 203 -HVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAKRNHRKLGKELELFMFSE 261
Query: 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 511
+PG F+ PKG I N L F+R ++ +QEV +P + N +LW+ SGHW HY +NM+
Sbjct: 262 EAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMY 321
Query: 512 SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571
+V+N+++ALKPMNCPGH L+F +++ S+RELP+RM +FG +HR+E SGAL GL RVR
Sbjct: 322 FSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRT 381
Query: 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEK 631
F QDDAH+F T +QI DEI + + VY FGF + + LSTRPE +G+ E+W +AE
Sbjct: 382 FCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEA 441
Query: 632 QLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
LE L S + N GDGAFYGPKID I DAL R HQC TIQLDFQ+P +F+L Y+
Sbjct: 442 SLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYI 500
|
Length = 639 |
| >gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = 1e-98
Identities = 161/411 (39%), Positives = 231/411 (56%), Gaps = 39/411 (9%)
Query: 286 MKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCG-PLIDLCR 342
M I+ P R E+ +E+ + P+KL IL E + T Y G DLC
Sbjct: 98 MDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEIL-EGIKEEPITIYHIGEEWWDLCA 156
Query: 343 GPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGK 402
GPHV TGKI K + E V + YW G
Sbjct: 157 GPHVERTGKIN----------KKAVELESV----------------------AGAYWRGD 184
Query: 403 ADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGS-CFFQP 461
+ LQR+YG ++ +QLK + +EEA +RDHR++G++ +LF + + G F+ P
Sbjct: 185 EKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHP 244
Query: 462 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-FDVENETY 520
KGA + + + + + + + G+ + +P+V LW+TSGH Y ENM+ D+E+E Y
Sbjct: 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELY 304
Query: 521 ALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 580
L+PMNCP H L++ ++ S+R+LP+R+A+ G ++R ELSG+L GL RVR F QDDAHIF
Sbjct: 305 QLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF 364
Query: 581 CTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNS 639
C +QI DEI G LD + FGF+ + + LSTRPEK +G ++W KA L +L+
Sbjct: 365 CLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDD 424
Query: 640 FGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
G + + G GAFYGPKID+ I DAL R QC+TIQ+DF LP RF++ YV
Sbjct: 425 KGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYV 475
|
Length = 614 |
| >gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 6e-80
Identities = 127/347 (36%), Positives = 195/347 (56%), Gaps = 14/347 (4%)
Query: 348 HTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAES 407
I+ ++ Y K+ I+++KV+ T + ++++ H+ + E
Sbjct: 61 ANVSIENNQIV-YKGNKVSIIEDKVSISTNLNPKYFEILNI--STHHPNP-------NEQ 110
Query: 408 LQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELS-PGSCFFQPKGAFI 466
R+ G++F +QLK++ E+A + DHR IG + +LF FHE + G F PKG I
Sbjct: 111 YVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTI 170
Query: 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMN 526
N L+ F+R G+QEV + +V+ +W+ SGH+ Y + + F++E + Y +KPMN
Sbjct: 171 RNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMN 230
Query: 527 CPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI 586
CP H LI+ + R++R+LP+R ++FG ++R E G L GL RVR F QDD HIF +Q+
Sbjct: 231 CPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQL 290
Query: 587 GDEIVGALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEP 643
+EI + V+ FGF LSTRP++ +G E+W KA L ++L G
Sbjct: 291 REEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLK 350
Query: 644 WTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
+ +GAFYGPKID I D+L R Q +TIQ+DF LP RF L Y+
Sbjct: 351 FGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYI 397
|
Length = 545 |
| >gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-48
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
Query: 466 IYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSF-DVENETYALK 523
+ N L FIR ++ G+QEV +P + +LW+ SGHW Y E M+ F D E L+
Sbjct: 1 LRNALENFIRELLKRYGYQEVDTPILEPKELWEGSGHWDDYFEEEMYKFKDRGGEELYLR 60
Query: 524 PMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 583
P G +F + + S+RELPL++ G R E GL RVR F Q DA IF T
Sbjct: 61 PTAEVGITRLFKNEILSYRELPLKLYQIGPCFRYEA-RPRRGLGRVREFTQVDAEIFGTP 119
Query: 584 EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTR-----PEKYLGELEVWNKAE 630
EQ +E+ L + G + + L+T G+LE W AE
Sbjct: 120 EQSEEELEELLKLAEEILQDLGLPYRVVLATTGDLGGSASKEGDLEAWLPAE 171
|
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171 |
| >gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-38
Identities = 69/181 (38%), Positives = 93/181 (51%), Gaps = 43/181 (23%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98
+VTLPDG + K W TTP D+A ISKGLA+S +IA+V+GVLWD+ RPLE +CKL+L
Sbjct: 53 KVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLF- 111
Query: 99 KFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAM 158
KFD++E FWHS+AH+LGEA+
Sbjct: 112 -------------------------------------KFDDDEGRDTFWHSSAHILGEAL 134
Query: 159 ERVYGGCLCYGPPIEN--GFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVP-EEIQV 215
E YG LC GP GFYYD + E + ++ + ++ + K P E I+V
Sbjct: 135 ELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNE--EDFKPIEARAEKAVKEKQPFERIEV 192
Query: 216 T 216
T
Sbjct: 193 T 193
|
Length = 686 |
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-28
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 72/210 (34%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
++TLPDG + A T DVAA IS GLA + + KVNG L DL P+E + LE+
Sbjct: 3 KITLPDGSVREFEAG---VTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEI 59
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EE + HS AH+L +
Sbjct: 60 I--------------------------------------TAKDEEGLEIIRHSAAHLLAQ 81
Query: 157 AMERVYGG-CLCYGPPIENGFYYDMYLDG----------EAQMERI-----------TLW 194
A++R+Y L GP IENGFYYD + E +M+ I
Sbjct: 82 AVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSR 141
Query: 195 DKLKKQYDE-------EIAAKVPEEIQVTL 217
++ + + + E+ ++PE+ +++L
Sbjct: 142 EEAIELFKDRGEPYKVELIEEIPEDEEISL 171
|
Length = 638 |
| >gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-22
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97
++TLPDG + TTP D+A IS GLA + AKVNG L DL RPLE +C+LE++
Sbjct: 2 KITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEII 59
|
In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. Length = 61 |
| >gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 3e-20
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-----DVEN 517
G ++ L F+ + G+QE++ P + L+ GH Y + M++F ++ +
Sbjct: 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRD 60
Query: 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDA 577
L+P C IF + S+R LPLR+ G R+E SG GL RVR F+Q +
Sbjct: 61 TDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEY 119
Query: 578 HIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLG 621
+F E+ +E L+ + G + ++ P G
Sbjct: 120 VVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFGRG 163
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 235 |
| >gnl|CDD|217243 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-17
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97
V PDGK+ T P D A I L I AKVNG LD LE +E++
Sbjct: 3 VYTPDGKVPELPRGST-PEDFAYAIHTDLGKKFIGAKVNGQRVGLDHVLEDGDVVEIV 59
|
The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60 |
| >gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-15
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 190 RITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTII 249
RI L++K++ + + + + I+VTLPDG + K W TTP D+A ISKGLA+S +I
Sbjct: 29 RIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALI 88
Query: 250 AK 251
A+
Sbjct: 89 AQ 90
|
Length = 686 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 5e-15
Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 19/200 (9%)
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
I L F+ GFQEV +P V L + +GH + + E L+P
Sbjct: 4 KIEQKLRRFMAE----LGFQEVETPIVEREPLLEKAGHE--PKDLLPVGAENEEDLYLRP 57
Query: 525 MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 584
PG +F V R+LPLR+A+ G RNE GL RVR F Q + +F
Sbjct: 58 TLEPGLVRLF---VSHIRKLPLRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDG 112
Query: 585 QIGDEIVGALDFLRNVYSIFGFTFNLR--LSTRPEKYLG------ELEVWNKAEKQLEAS 636
+ E ++ + G ++ T E G E+EV + + LE
Sbjct: 113 EEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPEGRGLEIG 172
Query: 637 LNSFGEPWTENPGDGAFYGP 656
+ + D F
Sbjct: 173 SGGYRQDEQARAADLYFLDE 192
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 9e-15
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKIVPAKSWR--TTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
++ PDG + K + T ++A IS L + KVN L+DL R LE + ++E+
Sbjct: 7 EIKFPDGSV---KEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEI 63
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ D+ E + HS AH+L +
Sbjct: 64 IT--------------------------------------IDSNEGVEIARHSAAHILAQ 85
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A++R+YG L GP IENGFYYDM L E +M++I
Sbjct: 86 AVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKI 131
|
Length = 639 |
| >gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-10
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 121 LDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGFYYDM 180
+D L+ ++ ++EE + HS AHVL +A++R+Y + GP IE GFYYD
Sbjct: 7 VDGELDLKDEIIT---AEDEEGLEIIRHSCAHVLAQAVKRLYPD-VTIGPVIEEGFYYDF 62
Query: 181 YLD 183
+
Sbjct: 63 DVK 65
|
Length = 589 |
| >gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-10
Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 42/297 (14%)
Query: 415 SFPDNKQLKEWEKLQEEAAKRD--HRKIGREQELFFFHELS-PGSCFFQPKGAFIYNTLV 471
+ D K L ++E ++E + H K+ RE+EL + S G + PKG I + L
Sbjct: 175 GYEDLKALVDYEVGKKELVGGEPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLE 234
Query: 472 EFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHC 531
+++ + + G V +P +Y++ H + E + + + L+ C G
Sbjct: 235 DYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQF 294
Query: 532 LIFDHRVRSWRELPLRM---ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC-----TV 583
L+ S++ LPL+M + + R E G L GL R+R F D H C +
Sbjct: 295 LMLKDMTISYKNLPLKMYELSTYS--FRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAM 352
Query: 584 EQIG---DEIVGAL-DFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNS 639
E+ + I+ D R+ FT E + E + W + +
Sbjct: 353 EEFEKQYEMILETGEDLGRDYEVAIRFT---------EDFYEENKDW------IVELVKR 397
Query: 640 FGEP-----WTENPGDGAFYGP-KIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
G+P E Y K++ D+L RP + T+Q+D + RF + YV
Sbjct: 398 EGKPVLLEILPE----RKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYV 450
|
Length = 613 |
| >gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 4e-09
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
I++TLPDG + TTP D+A IS GLA + AK
Sbjct: 1 IKITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAK 38
|
In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. Length = 61 |
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 1e-08
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 332 YRCGPL-IDLCRGPHVRHTGKIKAFKVTK 359
G ++LC G HV +TG+I AFK+
Sbjct: 4 VSIGDFSVELCGGTHVPNTGEIGAFKILS 32
|
The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 43 |
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 332 YRCGPL-IDLCRGPHVRHTGKIKAFKVTKYN 361
R G +DLC G HV +TG+I AFK+ K +
Sbjct: 4 VRIGDFDVDLCGGTHVPNTGEIGAFKILKGD 34
|
The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 44 |
| >gnl|CDD|217243 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 3e-08
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDW 253
I+V PDGK+ T P D A I L I AK
Sbjct: 1 IRVYTPDGKVPELPRGST-PEDFAYAIHTDLGKKFIGAKVN 40
|
The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60 |
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 2e-07
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 138 DNEEASSVFWHSTAHVLGEAMERVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWD- 195
D+ + V HS AHVL +A++ ++ L GPPIE+GFYYD + E T D
Sbjct: 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVP-----EPFTPEDL 55
Query: 196 -KLKKQYDEEIAAKVP 210
K++K+ + I +P
Sbjct: 56 KKIEKKMKKIIKRGLP 71
|
Length = 575 |
| >gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 147 WHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEI 205
HS AH+L EA++++Y L GP +E+GFYYD LD E + +K++K E
Sbjct: 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDL---EKIEKDMKEIA 57
Query: 206 AAKVP 210
P
Sbjct: 58 KKNYP 62
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether. [Protein synthesis, tRNA aminoacylation]. Length = 563 |
| >gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-07
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Query: 450 HELSPGSCFFQPKGAFIYNTL---------VE-FIRSEYRKRGFQEVVSPNVYNVKLWQT 499
H+L + F + G+ +YN L VE +R E K G EV+ P + +LWQ
Sbjct: 23 HQLLLRAGFIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE 82
Query: 500 SGHWAHYSENMFSF-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
SG W Y + D + + L P + + + ++S+++LPL + R+E
Sbjct: 83 SGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDE 142
Query: 559 LSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALD-FLRNVYSIFGFTF 608
+ GL R R F DA+ F + E+ D + N++S G F
Sbjct: 143 IRPRF-GLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDF 192
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi [Protein synthesis, tRNA aminoacylation]. Length = 568 |
| >gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 418 DNKQLKEWEKLQEEAAK---RDHRKIGREQELFFFHELS--PGS--CFFQPKGAFIYNTL 470
DN +++ W + +DH ++G + L F + GS F++ KGA + L
Sbjct: 121 DNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERAL 180
Query: 471 VEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNC-PG 529
++F+ + K GF EV+ P + N++ +G + E++ + VE+ L P P
Sbjct: 181 IQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDL--YKVEDPDLYLIPTAEVPL 238
Query: 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELS--GALT-GLTRVRRFQQDDAHIFCTVEQ 585
L D + +LP++ + R+E G T GL RV H F VE
Sbjct: 239 TNLHRD-EILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRV--------HQFDKVEL 288
|
Length = 429 |
| >gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 511
S G + P G + + IR E K G QE++ P + +LW+ SG W Y +
Sbjct: 19 TSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELL 78
Query: 512 SF-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVR 570
D + + L P + + + ++S+++LPL + R+E+ GL R R
Sbjct: 79 RLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRF-GLMRGR 137
Query: 571 RFQQDDAHIF 580
F DA+ F
Sbjct: 138 EFLMKDAYSF 147
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. Length = 255 |
| >gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 16/183 (8%)
Query: 418 DNK-QLKEWEKLQEEAAKRDHRKIGREQELFFFH---ELSPGSCF--FQPKGAFIYNTLV 471
DN + + + H ++G + F +++ GS F + GA + L+
Sbjct: 122 DNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVT-GSRFYYLKNDGAKLERALI 180
Query: 472 EFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHC 531
F+ K G+QE+ P + N + +G + E++F +E+ L P
Sbjct: 181 NFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFK--LEDTDLYLIPTA--EVP 236
Query: 532 LIFDHR--VRSWRELPLRMADFGVLHRNEL--SGALT-GLTRVRRFQQDDAHIFCTVEQI 586
L HR + ELP++ R+E G T GL RV +F + + FC E+
Sbjct: 237 LTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEES 296
Query: 587 GDE 589
+E
Sbjct: 297 AEE 299
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418 |
| >gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-DVEN 517
+ P G + + IR E K G QEV+ P + +LW+ SG W + +F D +
Sbjct: 42 WLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGD 101
Query: 518 ETYALKPMN----CPGHCLIFDHRVRSWRELPLR 547
AL+P + +F +RS+++LPL+
Sbjct: 102 RPLALRPTSEEVITD----MFRKWIRSYKDLPLK 131
|
Length = 500 |
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 213 IQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
I++TLPDG + A T DVAA IS GLA + + K
Sbjct: 2 IKITLPDGSVREFEAG---VTVADVAASISPGLAKAAVAGK 39
|
Length = 638 |
| >gnl|CDD|238395 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 14/194 (7%)
Query: 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG-HWAHYSENMFSF 513
G F P I + + + +++ G Q + P + H +S+ + F
Sbjct: 23 GIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVF 82
Query: 514 -----DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTR 568
+ E +AL+P I ++SW++LP + G R+E+ G R
Sbjct: 83 KDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLR 141
Query: 569 VRRFQQDDAHIF-CTVEQIGDEIVGALDFLRNVYSIFG-FTFNLRLSTRPEKYLG----- 621
R F D H E+ +E + L + F + K+ G
Sbjct: 142 AREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSR 201
Query: 622 ELEVWNKAEKQLEA 635
E E + K +A
Sbjct: 202 EFEALMEDGKAKQA 215
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. Length = 264 |
| >gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 148 HSTAHVLGEAMERVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWD--KLKKQYDEE 204
H+ AHV+ A+++++ + GP IENGFYYD ME +T D ++KK+ D
Sbjct: 48 HTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDF------DMEPLTDKDLKRIKKEMDRI 101
Query: 205 IAAKVP 210
I+ +P
Sbjct: 102 ISRNLP 107
|
Length = 614 |
| >gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 418 DNKQLKEW-EKLQEEAAKRDHRKIGREQELFFFHELS----PGSCFFQPKGAFIYNTLVE 472
DN +++ W E + +DH ++G + ++ F + + + GA + L+
Sbjct: 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALIN 60
Query: 473 FIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPM-NCPGHC 531
F KRGF V+ P + ++ + +G + E ++ VE E L P
Sbjct: 61 FALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYK--VEGEDLYLIATAEVPLAA 118
Query: 532 LIFDHRVRSWRELPLRMADFGVLHRNELS--GALT-GLTRVRRFQQDDAHIFCTVEQ 585
L D + ELPL+ A + R E G T GL RV +F++ + +F E+
Sbjct: 119 LHRDEIL-EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEE 174
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. Length = 297 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| PLN02908 | 686 | threonyl-tRNA synthetase | 100.0 | |
| KOG1637|consensus | 560 | 100.0 | ||
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PLN02837 | 614 | threonine-tRNA ligase | 100.0 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 100.0 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 100.0 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 100.0 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 100.0 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 100.0 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 100.0 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 100.0 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 100.0 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 100.0 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 100.0 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 100.0 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 100.0 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 100.0 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 100.0 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 100.0 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| KOG2509|consensus | 455 | 99.98 | ||
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 99.97 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 99.96 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 99.96 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.96 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 99.95 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 99.93 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 99.91 | |
| KOG2324|consensus | 457 | 99.91 | ||
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.88 | |
| PLN02530 | 487 | histidine-tRNA ligase | 99.87 | |
| KOG4163|consensus | 551 | 99.87 | ||
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 99.86 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.84 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 99.84 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 99.84 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 99.84 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.82 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 99.82 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 99.81 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 99.8 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 99.79 | |
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 99.78 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 99.78 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.77 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.75 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 99.74 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 99.73 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.65 | |
| KOG1936|consensus | 518 | 99.61 | ||
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 99.57 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.46 | |
| KOG2298|consensus | 599 | 99.45 | ||
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.41 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.24 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.21 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.19 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.16 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.13 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 99.1 | |
| PRK07080 | 317 | hypothetical protein; Validated | 99.05 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.97 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 98.69 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 98.54 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.53 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 98.29 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 98.28 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn | 98.26 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 98.02 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 97.89 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 97.87 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, | 97.86 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 97.84 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 97.8 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 97.71 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 97.69 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote | 97.67 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 97.65 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 97.65 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 97.64 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 97.64 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 97.63 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 97.6 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 97.56 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 97.54 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn | 97.53 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 97.52 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 97.49 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 97.46 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 97.44 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 97.44 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 97.42 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 97.4 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 97.39 | |
| KOG1637|consensus | 560 | 97.38 | ||
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 97.38 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 97.38 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 97.37 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 97.28 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 97.24 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, | 97.17 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 97.15 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 97.14 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 97.11 | |
| KOG2411|consensus | 628 | 97.1 | ||
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 97.07 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 97.07 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 97.0 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 96.96 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 96.89 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 96.88 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 96.82 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 96.79 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 96.74 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 96.68 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 96.5 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote | 96.46 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 96.39 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 96.31 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 95.59 | |
| KOG1885|consensus | 560 | 95.42 | ||
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 95.26 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 95.11 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 94.66 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 94.44 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 94.09 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 93.98 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 93.96 | |
| KOG1035|consensus | 1351 | 93.63 | ||
| PRK08364 | 70 | sulfur carrier protein ThiS; Provisional | 93.6 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 93.56 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 93.54 | |
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases | 93.51 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 93.48 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 93.44 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 93.44 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 93.22 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 92.71 | |
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases | 92.66 | |
| KOG0554|consensus | 446 | 92.51 | ||
| PRK05659 | 66 | sulfur carrier protein ThiS; Validated | 92.38 | |
| PLN02961 | 223 | alanine-tRNA ligase | 92.11 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 91.91 | |
| KOG2784|consensus | 483 | 91.47 | ||
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 90.85 | |
| cd00565 | 65 | ThiS ThiaminS ubiquitin-like sulfur carrier protei | 90.84 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 90.84 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine | 90.59 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 90.59 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 89.29 | |
| PRK06437 | 67 | hypothetical protein; Provisional | 89.22 | |
| PRK06944 | 65 | sulfur carrier protein ThiS; Provisional | 88.48 | |
| PRK06488 | 65 | sulfur carrier protein ThiS; Validated | 88.09 | |
| KOG0556|consensus | 533 | 88.0 | ||
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 86.44 | |
| KOG0555|consensus | 545 | 86.35 | ||
| PRK07696 | 67 | sulfur carrier protein ThiS; Provisional | 86.18 | |
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 85.25 | |
| PRK06083 | 84 | sulfur carrier protein ThiS; Provisional | 84.63 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 84.53 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 83.3 | |
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 82.76 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine | 81.68 | |
| PRK08364 | 70 | sulfur carrier protein ThiS; Provisional | 80.61 | |
| TIGR01683 | 64 | thiS thiamine biosynthesis protein ThiS. This mode | 80.1 |
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-101 Score=898.51 Aligned_cols=517 Identities=61% Similarity=1.104 Sum_probs=485.4
Q ss_pred hhhhhhccCccccccccCcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 18 EKQIESYSDVKVPKKCIGALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|.+.+..... .+++|++|||++..+++|+|||+|||+.+++++++.+++|+|||++|||++||+.||+|+|+
T Consensus 38 ~~~~~~~~~~~~------~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l 111 (686)
T PLN02908 38 ARQLARLESAGG------DPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLF 111 (686)
T ss_pred HHHHHHhhhccC------CceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEe
Confidence 455555443222 34999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhcCccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceeecCCcC--Cc
Q psy10609 98 NKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIE--NG 175 (715)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 175 (715)
+|++++|.++||||++||||+|++++|+..+++||+++ +|
T Consensus 112 --------------------------------------~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~G 153 (686)
T PLN02908 112 --------------------------------------KFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEG 153 (686)
T ss_pred --------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCc
Confidence 99999999999999999999999999977899999999 99
Q ss_pred eEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCc
Q psy10609 176 FYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTR 255 (715)
Q Consensus 176 ~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~ 255 (715)
||||+++++..
T Consensus 154 fy~d~~~~~~~--------------------------------------------------------------------- 164 (686)
T PLN02908 154 FYYDAFYGDRT--------------------------------------------------------------------- 164 (686)
T ss_pred EEEEeecCCCC---------------------------------------------------------------------
Confidence 99999864320
Q ss_pred ccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeC
Q psy10609 256 ANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCG 335 (715)
Q Consensus 256 ~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~ 335 (715)
+|.+++..|+..|.++|+++.|+.+..++.++|.++|+.++++.++++...+...+++|+||
T Consensus 165 ------------------~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g 226 (686)
T PLN02908 165 ------------------LNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCG 226 (686)
T ss_pred ------------------CCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEEC
Confidence 56678889999999999999999999999999999999888899999854225578999999
Q ss_pred CcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhccc
Q psy10609 336 PLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGIS 415 (715)
Q Consensus 336 ~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~ 415 (715)
+++|+|+|||+++|+..++|++.+ +.+.+|.|+.++-.|||+||.+
T Consensus 227 ~~~D~c~Gphv~sTg~ik~f~l~~----------------------------------~~~~~~lg~~~~~~lqRi~G~s 272 (686)
T PLN02908 227 PLVDLCRGPHIPNTSFVKAFACLK----------------------------------ASSAYWRGDVDRESLQRVYGIS 272 (686)
T ss_pred CEEEecCCCCCCCCCccceeEEEE----------------------------------ecceEEcCCCcchhhEEEeeec
Confidence 999999999999999999998888 4455888999999999999999
Q ss_pred CCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 416 FPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 416 ~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
||++++|++|++..+|+++|||++||++++||+|++.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.+
T Consensus 273 fp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 352 (686)
T PLN02908 273 FPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMD 352 (686)
T ss_pred cCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEe
Q psy10609 496 LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQD 575 (715)
Q Consensus 496 l~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~ 575 (715)
+|+.||||++|.++||.++.++++++||||+||+|+.+|+++.+||++||+|++++|+|||+|++|.++||+|+|||+|+
T Consensus 353 l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~ 432 (686)
T PLN02908 353 LWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQD 432 (686)
T ss_pred HHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEe
Confidence 99999999999999999977789999999999999999999999999999999999999999999988999999999999
Q ss_pred eEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCcccc
Q psy10609 576 DAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYG 655 (715)
Q Consensus 576 d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYg 655 (715)
|+|+||+++|+.+|+.++++++.++|+.||++|++.+++|+++++|+.+.|+.++..|.++|++.|.+|.+.+|++||||
T Consensus 433 d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afyg 512 (686)
T PLN02908 433 DAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYG 512 (686)
T ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCc-eecc
Q psy10609 656 PKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRA-QTHE 699 (715)
Q Consensus 656 pkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~-~~~~ 699 (715)
||||+++.|+++|.|||+|+|+||++|.||||+|.+++|. ..+|
T Consensus 513 pkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~p 557 (686)
T PLN02908 513 PKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERP 557 (686)
T ss_pred cceEEEEEeccCCEeeccceeecccCHhhcCCEEECCCCCcCCCC
Confidence 9999999999999999999999999999999999999987 3454
|
|
| >KOG1637|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-97 Score=786.98 Aligned_cols=424 Identities=74% Similarity=1.299 Sum_probs=402.9
Q ss_pred EecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcCcccc
Q psy10609 41 TLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGVLWD 120 (715)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (715)
+||||+.+...+|.|||||||.+ |+++++++++|+|||++|||+||+++|| ++++
T Consensus 4 ~Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell----------------------- 58 (560)
T KOG1637|consen 4 VLPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELL----------------------- 58 (560)
T ss_pred ecCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHc-----------------------
Confidence 39999999999999999999999 9999999999999999999999999999 8888
Q ss_pred CCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHH
Q psy10609 121 LDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQ 200 (715)
Q Consensus 121 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~ 200 (715)
+|++.+|..|||||.|||||+|+++.||++||+||++++|||||+ + ++
T Consensus 59 ---------------~f~~~~~k~vfwhssahvlg~a~e~~~g~~lc~Gpp~~~gf~yd~-~-~~--------------- 106 (560)
T KOG1637|consen 59 ---------------KFDDDEGKDVFWHSSAHVLGEALEQEYGAHLCIGPPIEEGFYYDM-L-DE--------------- 106 (560)
T ss_pred ---------------cCCCcccceeeeehhhhHhhHHHHHhcCeeEeeCCCCcCceehhh-h-cc---------------
Confidence 999999999999999999999999999999999999999999999 4 32
Q ss_pred HHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChH
Q psy10609 201 YDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFP 280 (715)
Q Consensus 201 ~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~ 280 (715)
|+.++..
T Consensus 107 -------------------------------------------------------------------------i~~~d~~ 113 (560)
T KOG1637|consen 107 -------------------------------------------------------------------------ISSNDFP 113 (560)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 1222211
Q ss_pred HHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhccc
Q psy10609 281 VMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKY 360 (715)
Q Consensus 281 gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~ 360 (715)
.++ +|++++|++.+|+++++
T Consensus 114 ~~e-----------------------------------------------------------~phi~~tg~ika~k~~~- 133 (560)
T KOG1637|consen 114 SIE-----------------------------------------------------------APHIRHTGKIKAFKILK- 133 (560)
T ss_pred ccc-----------------------------------------------------------cccccccceeeeeeeec-
Confidence 111 15667899999999998
Q ss_pred CcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHH
Q psy10609 361 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKI 440 (715)
Q Consensus 361 ~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~L 440 (715)
-+|+||.|+ ++|+.+.|++|.+..+||+.||||+|
T Consensus 134 ---------------------------------nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~rdHRki 168 (560)
T KOG1637|consen 134 ---------------------------------NSSAYWEGD------------SFPDPKQLKEWEKFQEEAKKRDHRKI 168 (560)
T ss_pred ---------------------------------cchhhhccc------------cCCCHHHHHHHHhhchhhhhhhhhhh
Confidence 567899766 88999999999999999999999999
Q ss_pred hhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceE
Q psy10609 441 GREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETY 520 (715)
Q Consensus 441 g~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l 520 (715)
|++++||+|++.+||..+|+|.|+++++.|.++++...+++||+||.||.+.+..||++||||++|.++||+|....+++
T Consensus 169 g~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~ 248 (560)
T KOG1637|consen 169 GKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEF 248 (560)
T ss_pred hhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHH
Q psy10609 521 ALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNV 600 (715)
Q Consensus 521 ~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~i 600 (715)
+|+||+||+|+.+|+++.+||++||+|++.+|..+|+|.||++.||.|+|.|.|+|+||||+++|..+|+..++++...+
T Consensus 249 ~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~v 328 (560)
T KOG1637|consen 249 ALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYV 328 (560)
T ss_pred ccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccC
Q psy10609 601 YSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQ 680 (715)
Q Consensus 601 l~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~ 680 (715)
|.-+|+.|.+.+|+||++++|+.++|++|+..|+++|+..|.+|.+++|+|||||||||+++.|++||.+||+|||||||
T Consensus 329 Y~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFq 408 (560)
T KOG1637|consen 329 YGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQ 408 (560)
T ss_pred HHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcEEEcCCCceecc
Q psy10609 681 LPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 681 ~~~rf~l~Y~~~dg~~~~~ 699 (715)
+|.||+|.|.++||+.++|
T Consensus 409 LP~rFdL~y~~~~g~~erP 427 (560)
T KOG1637|consen 409 LPIRFDLEYETEDGDLERP 427 (560)
T ss_pred ChhhcCceeecccccccch
Confidence 9999999999999998888
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-93 Score=827.16 Aligned_cols=502 Identities=45% Similarity=0.834 Sum_probs=470.3
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcC
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNG 116 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (715)
+++|+++||++..++. +||++|||+.+++.+...+++|+|||+++||++|++.||+|+|+
T Consensus 5 mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv------------------- 64 (639)
T PRK12444 5 MIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEII------------------- 64 (639)
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEe-------------------
Confidence 4899999999988887 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHH
Q psy10609 117 VLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWD 195 (715)
Q Consensus 117 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (715)
++++++|.++||||++|||+.|++++||. .+.+||++++|||||+..+.+
T Consensus 65 -------------------~~~~~~g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~---------- 115 (639)
T PRK12444 65 -------------------TIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSS---------- 115 (639)
T ss_pred -------------------cCCChHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCC----------
Confidence 99999999999999999999999999987 699999999999999975432
Q ss_pred HHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 196 KLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 196 ~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
+|
T Consensus 116 ------------------------------------------------------------------------------it 117 (639)
T PRK12444 116 ------------------------------------------------------------------------------VN 117 (639)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 56
Q ss_pred CCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 276 TLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 276 ~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
.+++..|+..|.++|+++.|+.+..++.++|.++|++ +.++.++++...+...+++|+||+++|+|+|||+++|+..+
T Consensus 118 ~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sTg~ik 197 (639)
T PRK12444 118 VEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDLCRGPHLPSTGYLK 197 (639)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCCCCCc
Confidence 6778889999999999999999999999999999985 34677888754223568889999999999999999999888
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
+|++..+ .+.+|+|+.++..|+|++|.+||++++|++|++..++++
T Consensus 198 ~f~l~~~----------------------------------~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~~~~~~ 243 (639)
T PRK12444 198 AFQLTHV----------------------------------SGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAA 243 (639)
T ss_pred eeEEEEE----------------------------------cceEEcCCCCCcceEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 8888773 334788999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
+|||++||++++||++++.++|+++|+|.|+.+++.|++++++.+.++||++|.||+|++.++|++|||++++.++||.+
T Consensus 244 ~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~ 323 (639)
T PRK12444 244 KRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS 323 (639)
T ss_pred cCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999944
Q ss_pred eecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHH
Q psy10609 514 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 593 (715)
Q Consensus 514 ~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~ 593 (715)
+.+++.++||||+|++++++|++++.||++||+|++++|+|||+|++|.++||+|+|||+|+|+|+||+++++++|+.++
T Consensus 324 d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~ 403 (639)
T PRK12444 324 EVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSV 403 (639)
T ss_pred cCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999977999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 594 LDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 594 l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
++++.++|+.||++|++.+++++++++|+.+.|+.+++.|+++|++.|++|.+++|+|+|||||+|+.+.|..||.||||
T Consensus 404 ~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~ 483 (639)
T PRK12444 404 MAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCG 483 (639)
T ss_pred HHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceecc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+|+||++|+||+++|++++|++.+|
T Consensus 484 t~~~d~~~~~~f~l~~~~~~g~~~~P 509 (639)
T PRK12444 484 TIQLDFQMPEKFDLNYIDEKNEKRRP 509 (639)
T ss_pred ceeeecccccccceEEECCCCCcccc
Confidence 99999999999999999999998877
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-87 Score=753.23 Aligned_cols=434 Identities=49% Similarity=0.875 Sum_probs=417.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcCCceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeE
Q psy10609 136 KFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQV 215 (715)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I 215 (715)
..+. ++..++|||+||||+.|++++|++ +++||++++|||||++.+.+
T Consensus 20 ~~~~-~~~~~~rhs~ah~l~~av~~l~p~-~~~gp~ie~gfyyd~~~~~~------------------------------ 67 (589)
T COG0441 20 AEDE-EGLEIIRHSCAHVLAQAVKRLYPD-VTIGPVIEEGFYYDFDVKEP------------------------------ 67 (589)
T ss_pred ccCc-cchhhhhhHHHHHHHHHHHHhCCC-ccccCcccceeEEeeccCCC------------------------------
Confidence 4455 999999999999999999999999 99999999999999976543
Q ss_pred EcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCC
Q psy10609 216 TLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQP 295 (715)
Q Consensus 216 ~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P 295 (715)
++.+++..++..|.+++++++|
T Consensus 68 ----------------------------------------------------------~~~~dl~~ie~~m~~i~~~~~~ 89 (589)
T COG0441 68 ----------------------------------------------------------ITPEDLLKIEKEMKEIAKENLP 89 (589)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHHHHhcCc
Confidence 6778888999999999999999
Q ss_pred CceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCC
Q psy10609 296 FERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTP 375 (715)
Q Consensus 296 ~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~ 375 (715)
+.+..++.+++.+.|. +++.++|+.. + ..+++|..|.|+|+|.||++++|+.+ ||+++.
T Consensus 90 ~~~~~~~~e~a~~~f~--~yK~~~i~~~-~-~~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~---------------- 148 (589)
T COG0441 90 IEREVVSREEARAPFG--PYKAELIDCK-G-HPLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLK---------------- 148 (589)
T ss_pred eEEEEecHHHHHHHhh--hhHHHHHhcC-C-CCceeEecCccccccCCCCCCccceE-EEEEEE----------------
Confidence 9999999999999998 5899999866 4 78899999999999999999999999 888887
Q ss_pred ceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceecc-CCC
Q psy10609 376 TTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE-LSP 454 (715)
Q Consensus 376 ~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~-~~~ 454 (715)
++++||+|+.++.+|+|++|.+|++..+|+.++...+++++||||+||++++||++++ .++
T Consensus 149 ------------------~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~ 210 (589)
T COG0441 149 ------------------LAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGP 210 (589)
T ss_pred ------------------ecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCC
Confidence 7888999999999999999999999999999999999999999999999999999995 689
Q ss_pred eeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHH
Q psy10609 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 455 G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~ 534 (715)
|++.|+|+|+.+++.|+++++.....+||++|.||.+.+.++|+.||||++|.++||.+...+++|+|||||||+|+.+|
T Consensus 211 G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~if 290 (589)
T COG0441 211 GLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIF 290 (589)
T ss_pred cceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEc
Q psy10609 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 535 ~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~ 613 (715)
++..+|||+||+|++++|.|||+|.+|.++||.|+|.|||.|+|+||+++|+.+|+..++++...+++.||++ |++.++
T Consensus 291 k~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls 370 (589)
T COG0441 291 KSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLS 370 (589)
T ss_pred hcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCC
Q psy10609 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNV 693 (715)
Q Consensus 614 ~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~d 693 (715)
+++ +++|+++.|+.+++.|+++|+..|++|.+.+|+|||||||+||+++|++||.|||||||+||++|+||+++|+++|
T Consensus 371 ~r~-k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d 449 (589)
T COG0441 371 TRP-KFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED 449 (589)
T ss_pred cCC-cccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCC
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceecc
Q psy10609 694 RAQTHE 699 (715)
Q Consensus 694 g~~~~~ 699 (715)
|++++|
T Consensus 450 ~~~~~P 455 (589)
T COG0441 450 GEKKRP 455 (589)
T ss_pred CCccCC
Confidence 999999
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-84 Score=748.43 Aligned_cols=442 Identities=40% Similarity=0.743 Sum_probs=415.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCcee
Q psy10609 136 KFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQ 214 (715)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~ 214 (715)
++++.++..++|||++|||+.|++++||. .+.+||++++|||||+.. .+
T Consensus 36 ~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~-~~----------------------------- 85 (614)
T PLN02837 36 TNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDM-EP----------------------------- 85 (614)
T ss_pred eccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecC-CC-----------------------------
Confidence 89999999999999999999999999975 799999999999999974 22
Q ss_pred EEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcC
Q psy10609 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQ 294 (715)
Q Consensus 215 I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~ 294 (715)
+|.+++..|+..|.++|+++.
T Consensus 86 -----------------------------------------------------------lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 86 -----------------------------------------------------------LTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHHHHcCC
Confidence 566788899999999999999
Q ss_pred CCceeecCHHHHHHHHhc--ChhHHHHHhhccCCCcEEEEeeCC-cccccCCccccCcChh--hHHhhcccCcchhhccc
Q psy10609 295 PFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHVRHTGKI--KAFKVTKYNPFKLRILK 369 (715)
Q Consensus 295 P~~r~~vs~eda~~If~~--~~~m~eLI~e~~pi~~v~~y~~~~-~~d~~~~p~~~~t~~~--eA~eLf~~~~~Kl~Ll~ 369 (715)
|+.+..++.++|.++|.+ ++++.++++.. +...+.+|+||+ |+|+|.|||+++|+.. ++++|..
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~-~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~---------- 175 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELES---------- 175 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccC-CCCeEEEEEECCeEEEecCCCCcccccccccceEEEEE----------
Confidence 999999999999999874 34667787643 456788999997 8999999999999987 6666665
Q ss_pred cccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCccee
Q psy10609 370 EKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFF 449 (715)
Q Consensus 370 ~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~ 449 (715)
++++||+|+.++.+|+|++|++||++++|++|++..+|+++|||++||++++||+|
T Consensus 176 ------------------------~~g~ywrg~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~ 231 (614)
T PLN02837 176 ------------------------VAGAYWRGDEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSI 231 (614)
T ss_pred ------------------------eehhhhcccccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCccc
Confidence 77889999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCCh
Q psy10609 450 HEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNC 527 (715)
Q Consensus 450 ~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e 527 (715)
++. |+|+++|+|+|++++++|++++++.+.+.||++|.||+|.+.++|+.||||+.|.++||.+.+ +++.|+||||+|
T Consensus 232 ~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~ 311 (614)
T PLN02837 232 QDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNC 311 (614)
T ss_pred CcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCc
Confidence 985 899999999999999999999999999999999999999999999999999999999999865 477899999999
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 528 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 528 ~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
|.|+.+|+++++||++||+|++++|+|||+|.+|.++||+|+|||+|+|+|+||+++|+.+|+..+++++.++++.||++
T Consensus 312 p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~ 391 (614)
T PLN02837 312 PYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFS 391 (614)
T ss_pred HHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987799999999999999999999999999999999999999999999
Q ss_pred -EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccC
Q psy10609 608 -FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFN 686 (715)
Q Consensus 608 -~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~ 686 (715)
+.+.+++++++++|+++.|++++..|+++|+..|++|.+.+|+|||||||+|+++.|++||.|||||+|+||++|+||+
T Consensus 392 ~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~ 471 (614)
T PLN02837 392 KYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFD 471 (614)
T ss_pred eEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcC
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCceecccc
Q psy10609 687 LAYVKNVRAQTHELP 701 (715)
Q Consensus 687 l~Y~~~dg~~~~~~~ 701 (715)
++|+|+||++++|..
T Consensus 472 l~y~~~d~~~~~pv~ 486 (614)
T PLN02837 472 ITYVDSNSEKKRPIM 486 (614)
T ss_pred cEEECCCCCccCCEE
Confidence 999999999888743
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-82 Score=738.45 Aligned_cols=504 Identities=48% Similarity=0.860 Sum_probs=460.4
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcC
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNG 116 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (715)
+++|+++||++..++. +||+.|+|+.+++.....+++|+|||+++||++++..||+|+|+
T Consensus 1 ~~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi------------------- 60 (638)
T PRK00413 1 MIKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEII------------------- 60 (638)
T ss_pred CcEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeee-------------------
Confidence 4789999999888887 89999999999999899999999999999999999999999999
Q ss_pred ccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHH
Q psy10609 117 VLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWD 195 (715)
Q Consensus 117 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (715)
++++++|.++||||++|||+.|++++||+ .+.+||++++|||||+..+.+
T Consensus 61 -------------------~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~---------- 111 (638)
T PRK00413 61 -------------------TAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERP---------- 111 (638)
T ss_pred -------------------eccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCC----------
Confidence 89999999999999999999999999975 799999999999999975432
Q ss_pred HHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 196 KLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 196 ~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
++
T Consensus 112 ------------------------------------------------------------------------------lt 113 (638)
T PRK00413 112 ------------------------------------------------------------------------------FT 113 (638)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 56
Q ss_pred CCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 276 TLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 276 ~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
.+++..++..|.++|.++.|+.+..++.++|.++|++ ++.+.++++.......+++|+||+|+|+|+|||+++|+..+
T Consensus 114 ~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~ 193 (638)
T PRK00413 114 PEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIK 193 (638)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCEEEECCCCCCCcccCCc
Confidence 6778889999999999999999999999999999975 34567777653222367777777777777777777777777
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
.|++..+. +.+|.|+.++..|+|++|.+|+++.+|.+|.+..++++
T Consensus 194 ~f~i~~~~----------------------------------~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e~~ 239 (638)
T PRK00413 194 AFKLLKVA----------------------------------GAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAK 239 (638)
T ss_pred eeEEEEEc----------------------------------ceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHHHhc
Confidence 77666632 22566777778899999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
.+||++||+++++|+|++.++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.++|||+.+.++||.+
T Consensus 240 ~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~ 319 (638)
T PRK00413 240 KRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT 319 (638)
T ss_pred cccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHH
Q psy10609 514 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 592 (715)
Q Consensus 514 ~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~ 592 (715)
.+. ++.++||||+||+++++++++.+++++||+|++++|+|||+|+++.++||.|+|||+|+|+|+||.++++.+++.+
T Consensus 320 ~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~e 399 (638)
T PRK00413 320 TESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKK 399 (638)
T ss_pred ecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHH
Confidence 765 7899999999999999999999999999999999999999999987789999999999999999999988888888
Q ss_pred HHHHHHHHHHHcCcE-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccc
Q psy10609 593 ALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQ 671 (715)
Q Consensus 593 ~l~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q 671 (715)
++.++.++|+.||++ |++.+++++++++|+.+.|+++++.|++.|+..|+++...++.++||||++|+.+.|++|+.++
T Consensus 400 ii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (638)
T PRK00413 400 VIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQ 479 (638)
T ss_pred HHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEE
Confidence 999999999999995 9999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCcccccCcEEEcCCCceecccc
Q psy10609 672 CATIQLDFQLPIRFNLAYVKNVRAQTHELP 701 (715)
Q Consensus 672 ~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~ 701 (715)
|+|+|+||++|+|||++|++.+|+...|..
T Consensus 480 l~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~ 509 (638)
T PRK00413 480 CGTIQLDFNLPERFDLTYVGEDGEKHRPVM 509 (638)
T ss_pred eccEeecccChhhcCCEEECCCCCccCcEE
Confidence 999999999999999999999998766633
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-77 Score=687.86 Aligned_cols=441 Identities=47% Similarity=0.825 Sum_probs=411.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEE
Q psy10609 138 DNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVT 216 (715)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~ 216 (715)
++.+|.++||||++|||+.|++++||+ .+.+||++++|||||+..+.+
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~------------------------------- 49 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEP------------------------------- 49 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCC-------------------------------
Confidence 478999999999999999999999985 789999999999999976432
Q ss_pred cCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCC
Q psy10609 217 LPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPF 296 (715)
Q Consensus 217 lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~ 296 (715)
+|.+++..|+..|.++|+++.|+
T Consensus 50 ---------------------------------------------------------it~e~l~~Ie~~m~~lI~~~~pi 72 (575)
T PRK12305 50 ---------------------------------------------------------FTPEDLKKIEKKMKKIIKRGLPF 72 (575)
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHhcCCCE
Confidence 56677888999999999999999
Q ss_pred ceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCc
Q psy10609 297 ERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPT 376 (715)
Q Consensus 297 ~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~ 376 (715)
.+..++.++|.++|.++.++.++++.. +...+.+|+||+|+|+|.|||+++|+...+|+|..
T Consensus 73 ~~~~v~~eeA~~~f~~~~~k~~l~~~~-~~~~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~----------------- 134 (575)
T PRK12305 73 EREEVSREEAREEFANEPYKLELIDDI-PEEGITIYDNGDFEDLCRGPHVPNTKFIKAFKLTS----------------- 134 (575)
T ss_pred EEEEecHHHHHHhCCcChhHHHhhhhc-CCCeEEEEEECCEEEECCCCCCCCccCCceeEEEE-----------------
Confidence 999999999999998766778888754 44578899999999999999999999988888877
Q ss_pred eEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccC-CCe
Q psy10609 377 TTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL-SPG 455 (715)
Q Consensus 377 vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~-~~G 455 (715)
+.+.+|+|+.++..|+|++|.+||++..|++|++..++++.+||++||++++||++++. ++|
T Consensus 135 -----------------~~~~~~~~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G 197 (575)
T PRK12305 135 -----------------VAGAYWRGDEKNPQLQRIYGTAWETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPG 197 (575)
T ss_pred -----------------EcceEECCCCCCcceEEEEEEecCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCc
Confidence 34447889999999999999999999999999999999999999999999999999975 899
Q ss_pred eEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHH
Q psy10609 456 SCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 456 ~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~ 534 (715)
+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.+.++||.+.+ +++.++||||+||++++++
T Consensus 198 ~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~ 277 (575)
T PRK12305 198 LPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIY 277 (575)
T ss_pred ceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999965 4789999999999999999
Q ss_pred HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEc
Q psy10609 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 535 ~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~ 613 (715)
+++..++++||+|++|+|+|||+|+++.++||.|+|||+|+|+|+||.++++.+++.++++++.++|+.||++ +++.++
T Consensus 278 ~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~ 357 (575)
T PRK12305 278 KSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELS 357 (575)
T ss_pred hcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999999999999999999999987789999999999999999999999999899999999999999998 999999
Q ss_pred cCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcC
Q psy10609 614 TRP-EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692 (715)
Q Consensus 614 ~~~-ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~ 692 (715)
+++ ++++|+.+.|+++++.++++|+..|++|.+++++++|||||+|+++.|++||.|||+|+|+||++|.|||++|++.
T Consensus 358 ~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~ 437 (575)
T PRK12305 358 TREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAE 437 (575)
T ss_pred CCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECC
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccc
Q psy10609 693 VRAQTHELP 701 (715)
Q Consensus 693 dg~~~~~~~ 701 (715)
||...+|..
T Consensus 438 ~~~~~~p~~ 446 (575)
T PRK12305 438 DGKRQRPVM 446 (575)
T ss_pred CCCccCceE
Confidence 999888744
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=650.20 Aligned_cols=432 Identities=48% Similarity=0.872 Sum_probs=394.1
Q ss_pred HHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCCcEEec
Q psy10609 147 WHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPA 225 (715)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~ 225 (715)
|||++|||+.|++++|++ .+.+|+++++|||||+..+.+
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~---------------------------------------- 40 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRS---------------------------------------- 40 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCC----------------------------------------
Confidence 899999999999999986 699999999999999864322
Q ss_pred ccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceeecCHHH
Q psy10609 226 KSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKED 305 (715)
Q Consensus 226 ~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~vs~ed 305 (715)
+|.+++..++..|.++|.+++|+.+..++.++
T Consensus 41 ------------------------------------------------~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~ee 72 (563)
T TIGR00418 41 ------------------------------------------------FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEE 72 (563)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHHHhcCCCEEEEEECHHH
Confidence 56677888999999999999999999999999
Q ss_pred HHHHHh-cChhHHHHHhhccCCCcEEEEeeCC-cccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeC
Q psy10609 306 LIEMFK-YNPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCG 383 (715)
Q Consensus 306 a~~If~-~~~~m~eLI~e~~pi~~v~~y~~~~-~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g 383 (715)
|.++|+ .++++.+++++..+...+++|+||+ |+|+|+|||+++|+..+.|++..+.
T Consensus 73 A~~~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~---------------------- 130 (563)
T TIGR00418 73 ALEAFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVA---------------------- 130 (563)
T ss_pred HHHHHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEec----------------------
Confidence 999997 3446677877532456677888888 8888888888888887777766632
Q ss_pred CeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccC-CCeeEEeCcc
Q psy10609 384 PLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL-SPGSCFFQPK 462 (715)
Q Consensus 384 ~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~ 462 (715)
+.+|.++.++-+|+|++|.+||+.+.|++|++..++++.+||++||++++||++++. ++|+++|+|.
T Consensus 131 ------------~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~ 198 (563)
T TIGR00418 131 ------------GAYWRGDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPK 198 (563)
T ss_pred ------------cceEeEcCCCCceEeeeeccCCCHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEecc
Confidence 225556667778999999999999999999999999999999999999999999875 8999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhccc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
|+.++++|++++++.+.++||++|.||+|++.++|.+|||++.+.++||++.+. ++.++||||+|++++++++++.+++
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~ 278 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSY 278 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCCh
Confidence 999999999999999999999999999999999999999999999999999885 6899999999999999999999999
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccC-CCCC
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTR-PEKY 619 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~-~ek~ 619 (715)
++||+|++|+|+|||+|++|+++||+|+|||+|.|+|+||.++++++|+.+++.++.++|+.||++ +++.++++ ++++
T Consensus 279 ~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~ 358 (563)
T TIGR00418 279 RDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDF 358 (563)
T ss_pred HHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhh
Confidence 999999999999999999987799999999999999999998899999999999999999999998 67888887 4578
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 620 LGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 620 ~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+|+++.|..+.+.++++|+.+|++|+++++.|++|||++||.+.|++|+.|||||+|+||+++.|||+.|++++|...+|
T Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p 438 (563)
T TIGR00418 359 IGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCATVQLDFELPERFDLTYVDEDNEEKRP 438 (563)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCceeeceeeeccCCHhhcCCEEECCCCCEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred c
Q psy10609 700 L 700 (715)
Q Consensus 700 ~ 700 (715)
.
T Consensus 439 ~ 439 (563)
T TIGR00418 439 V 439 (563)
T ss_pred E
Confidence 4
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=646.94 Aligned_cols=343 Identities=36% Similarity=0.636 Sum_probs=327.1
Q ss_pred CcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccC-cCCCCCccCCCcch--------------hhhhhhh
Q psy10609 348 HTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG-PHNSSTYWEGKADA--------------ESLQRVY 412 (715)
Q Consensus 348 ~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~G-P~vpsT~~~G~lk~--------------f~L~r~~ 412 (715)
.+++++|.++|+++++|.++++. +.++ | ||.++|+|+| |||||| |.++. .+|||+|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~~~ph~~~t---~~~~~fkl~~~~~~g~~~~~~l~Riy 115 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIEN----NQIV-Y-KGNKVSIIEDKVSISTN---LNPKYFEILNISTHHPNPNEQYVRIR 115 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeec----CcEE-E-ccCceeecCCCCCCCCC---CCcceEEEEEeccCCCccCceeEEEE
Confidence 36899999999999999999973 4444 5 9999999999 999999 44554 4788999
Q ss_pred cccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcc
Q psy10609 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNV 491 (715)
Q Consensus 413 G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L 491 (715)
|++||++++|++|++..||+++||||+||++++||+|++. ++|+++|+|.|+.++++|++++++.+.++||++|.||+|
T Consensus 116 g~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i 195 (545)
T PRK14799 116 GVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHV 195 (545)
T ss_pred EeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCcc
Confidence 9999999999999999999999999999999999999864 899999999999999999999999999999999999999
Q ss_pred cchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeee
Q psy10609 492 YNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571 (715)
Q Consensus 492 ~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~RE 571 (715)
.+.++|+.||||++|.++||.++.++++++||||+||+|+.+|+++.+||++||+|++++|+|||+|++|+++||+|+||
T Consensus 196 ~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvRe 275 (545)
T PRK14799 196 FKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRG 275 (545)
T ss_pred chHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCcccccccee
Confidence 99999999999999999999997778999999999999999999999999999999999999999999999999999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE---EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~---~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
|+|+|+|+||+++|+.+|+.++++++.++|+.||++ |.+.+++||++++|+.+.|+++++.++++|++.|++|.+.+
T Consensus 276 F~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~ 355 (545)
T PRK14799 276 FVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKE 355 (545)
T ss_pred EEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEec
Confidence 999999999999999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred CCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 649 GDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 649 g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
++|+|||||+|+.+.|++||.|||+|+|+||++|+||+++|+++||++++|
T Consensus 356 g~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~~~~~~p 406 (545)
T PRK14799 356 KEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIKKRP 406 (545)
T ss_pred ceeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCCCCCccc
Confidence 999999999999999999999999999999999999999999999988776
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=513.74 Aligned_cols=264 Identities=59% Similarity=1.074 Sum_probs=256.8
Q ss_pred hHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe
Q psy10609 436 DHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~ 514 (715)
||++||++++||++++. ++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++||++.+.++||.+.
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 80 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE 80 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec
Confidence 79999999999999875 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHH
Q psy10609 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594 (715)
Q Consensus 515 d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l 594 (715)
++++.++||||+|++++.+++++++|+++||+|++++|+|||+|+++.++||+|+|||+|+|+|+||+++++++|+.+++
T Consensus 81 ~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l 160 (298)
T cd00771 81 EEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVL 160 (298)
T ss_pred cCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHH
Confidence 77789999999999999999999999999999999999999999998779999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcE-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 595 DFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 595 ~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
+++.++++.||++ +.+.++++++++.|+.+.|.++++.|+++++..|++|++.+|+|||||||||+++.|++||+||||
T Consensus 161 ~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~ 240 (298)
T cd00771 161 DLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCS 240 (298)
T ss_pred HHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecc
Confidence 9999999999998 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceecc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+|+||++|+||||+|+|+||++++|
T Consensus 241 t~qld~~~~~~f~l~y~~~~~~~~~p 266 (298)
T cd00771 241 TIQLDFNLPERFDLTYIGEDGEKKRP 266 (298)
T ss_pred eeEeeccChhhcCCEEEccCCCccCC
Confidence 99999999999999999999999887
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=471.06 Aligned_cols=286 Identities=22% Similarity=0.368 Sum_probs=263.2
Q ss_pred hhhhhhcccCCChhhhHHHHHHHH-----HHhhhhHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHH
Q psy10609 407 SLQRVYGISFPDNKQLKEWEKLQE-----EAAKRDHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRK 480 (715)
Q Consensus 407 ~L~r~~G~~~~~~~~L~~~~~~~e-----e~~~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~ 480 (715)
.|+.+....+.+..+|+.+.+.-. .-..+||++||+++|||++++. ++|++.|+|.|++++++|++++++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~ 243 (613)
T PRK03991 164 ELHDPEEFDFSGYEDLKALVDYEVGKKELVGGEPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVE 243 (613)
T ss_pred CeecccccccCCcHHHHHHHHHHhhccccCCCCCCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 477777778887777776665211 1136799999999999999885 6999999999999999999999999999
Q ss_pred cCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEecc-CcccCC
Q psy10609 481 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGV-LHRNEL 559 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~-~FR~E~ 559 (715)
.||++|.||.+.+.++|+.+||+++|.++||.+.+++++++||||+|++++.+|+++++||++||+|++++|+ |||+|+
T Consensus 244 ~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~ 323 (613)
T PRK03991 244 LGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQ 323 (613)
T ss_pred CCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCC
Confidence 9999999999999999999999999999999998878899999999999999999999999999999999999 999999
Q ss_pred CCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10609 560 SGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLN 638 (715)
Q Consensus 560 ~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~ 638 (715)
+|+++||+|+|||+|+|+|+||.+ +||.+|+..+++++.++++.||++|++.++.. .+.|+.+++.|+++++
T Consensus 324 ~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t-------~df~~~~~~~l~~~l~ 396 (613)
T PRK03991 324 RGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFT-------EDFYEENKDWIVELVK 396 (613)
T ss_pred CCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCH-------HHHhhhHHHHHHHHHH
Confidence 998899999999999999999996 89999999999999999999999999987652 3458888888999999
Q ss_pred hcCCCccc--cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 639 SFGEPWTE--NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 639 ~~g~~~~~--~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
..|++|.+ .+|+++|||||+|+++.|++||.|||||+|+|+++|+|||++|+|+||+.++|
T Consensus 397 ~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~g~~~~P 459 (613)
T PRK03991 397 REGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYP 459 (613)
T ss_pred HcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCCCCEeeC
Confidence 99999876 68999999999999999999999999999999999999999999999999876
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=363.11 Aligned_cols=234 Identities=21% Similarity=0.317 Sum_probs=209.2
Q ss_pred HHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhh-hhhCcccccCCCceEEeec
Q psy10609 438 RKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVE 516 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~-~~sG~~~~~~~emy~~~d~ 516 (715)
.+|++++|++|+.+ ++|+++|+|.|++++++|++++++.+.+.||++|.||.|++.++| ..+||+++|.++||++.+.
T Consensus 7 ~~l~~~~~~~d~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~ 85 (261)
T cd00778 7 TEVITKAELIDYGP-VKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHG 85 (261)
T ss_pred HHHHHHhCCcccCC-CCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEec
Confidence 46789999998864 579999999999999999999999999999999999999999998 5699999999999999874
Q ss_pred C-----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHH
Q psy10609 517 N-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEI 590 (715)
Q Consensus 517 ~-----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~ 590 (715)
+ ++++||||+|++++.++++++.||++||+|++++++|||+|.+++ +||+|+|||+|+|+|+ ||+++|+.+++
T Consensus 86 ~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~-~Gl~R~reF~~~d~h~~~~~~e~~~~~~ 164 (261)
T cd00778 86 GLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTT-RPFLRTREFLWQEGHTAHATEEEAEEEV 164 (261)
T ss_pred CCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCC-CceeEeeeeeeeceeeccCCHHHHHHHH
Confidence 2 579999999999999999999999999999999999999999997 8999999999999996 78889999999
Q ss_pred HHHHHHHHHHHHHc-CcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCc
Q psy10609 591 VGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 669 (715)
Q Consensus 591 ~~~l~~~~~il~~L-Gl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~ 669 (715)
.++++++.++|+.| ||+|++.....++++. |+.+.+++|+.+. .||.
T Consensus 165 ~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~------------------------------~a~~~~~ie~~~p--~~~~ 212 (261)
T cd00778 165 LQILDLYKEFYEDLLAIPVVKGRKTEWEKFA------------------------------GADYTYTIEAMMP--DGRA 212 (261)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCccccCC------------------------------CCccceEEEEEee--CCCE
Confidence 99999999999999 9998887554334443 3444557888887 6999
Q ss_pred cccccc-eeccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 670 HQCATI-QLDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 670 ~q~~Ti-QlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
|++||+ |+|+++|+||+|+|+|+||+.++| ++ +.++
T Consensus 213 ~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~--h~-~~~g 249 (261)
T cd00778 213 LQSGTSHNLGQNFSKAFDIKYQDKDGQKEYV--HQ-TSWG 249 (261)
T ss_pred EEEEeccccccccchhcCCEEECCCCCCcCc--EE-eccc
Confidence 999999 799999999999999999998776 55 6655
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=369.17 Aligned_cols=248 Identities=20% Similarity=0.408 Sum_probs=208.9
Q ss_pred hHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh
Q psy10609 422 LKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 496 (715)
Q Consensus 422 L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el 496 (715)
++.|+..+. .+++|||++||++++||++++ .|+|+++|+|.|++++++|++++++.+.+.||++|.||.|.+.++
T Consensus 5 ~~~~g~~~~~~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l 84 (297)
T cd00770 5 IRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEV 84 (297)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHH
Confidence 455665555 678999999999999999875 368899999999999999999999999999999999999999999
Q ss_pred hhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeEe
Q psy10609 497 WQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQ 573 (715)
Q Consensus 497 ~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFt 573 (715)
|++||||+.|.++||++.+ ++++|+||+|++++.++++++.|+++||+|++++|+|||+|.++ .++||+|+|||+
T Consensus 85 ~~~sg~~~~~~~~~f~v~~--~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~ 162 (297)
T cd00770 85 MEGTGQLPKFDEQLYKVEG--EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFE 162 (297)
T ss_pred HhhcCcCccChhcccEecC--CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeee
Confidence 9999999999999999965 68999999999999999999999999999999999999999984 378999999999
Q ss_pred EeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCC-----CHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 574 QDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLG-----ELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 574 q~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~g-----d~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
|+|+|+||.++++++++.++++++.++++.|||+|++......+...+ +.|.| .|
T Consensus 163 ~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~--------------------~p 222 (297)
T cd00770 163 KVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAW--------------------MP 222 (297)
T ss_pred eeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheeehee--------------------cC
Confidence 999999999999999999999999999999999988765433221111 22333 23
Q ss_pred CCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCC-CceecccccccccCC
Q psy10609 649 GDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNV-RAQTHELPRTLSDIR 708 (715)
Q Consensus 649 g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~d-g~~~~~~~~~~~~~~ 708 (715)
+++.| +...+|+.+ .||+ ++||+++|.|++ |++++ ++|+++.+
T Consensus 223 ~~~~~-------------~e~~s~s~~-~d~~-s~r~~i~y~~~~~~~~~~--~~~~~~~~ 266 (297)
T cd00770 223 GQGKY-------------REISSCSNC-TDFQ-ARRLNIRYRDKKDGKKQY--VHTLNGTA 266 (297)
T ss_pred CCCCe-------------EEEEEccCc-cChh-hhhcCcEEecCCCCCeee--eeEecccc
Confidence 22222 122445554 7998 899999999995 66644 57877654
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=380.11 Aligned_cols=260 Identities=20% Similarity=0.278 Sum_probs=229.0
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+.+++.++|+.|.+. ++++ ..++|+++|+|.|++++++|++++++++.++||++|.||.|.+.++|+.+|||+.|.+
T Consensus 15 ~~~~~~~~~~ll~r~-g~~~--~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~ 91 (439)
T PRK12325 15 PKEAEIVSHRLMLRA-GMIR--QQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGK 91 (439)
T ss_pred ccccchHHHHHHHHc-CCcc--ccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccch
Confidence 446788999999998 6653 4589999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.+.+. +++|+||||+|+.++.++++++.||++||+|+||+|+|||+|.++. +||+|+|||+|.|+|+||.+ +++
T Consensus 92 emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~-~GL~R~reF~~~D~h~f~~~~~~a 170 (439)
T PRK12325 92 EMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPR-FGVMRGREFLMKDAYSFDLDEEGA 170 (439)
T ss_pred hheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCC-CCccccceEeEeccEEEeCCHHHH
Confidence 99999775 7899999999999999999999999999999999999999998885 89999999999999999887 699
Q ss_pred HHHHHHHHHHHHHHHHHcCcE-EEEEEccCCC------CC----------------------CCCHHHHHHHHHHHHHHH
Q psy10609 587 GDEIVGALDFLRNVYSIFGFT-FNLRLSTRPE------KY----------------------LGELEVWNKAEKQLEASL 637 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~e------k~----------------------~gd~e~w~~a~~~L~~~L 637 (715)
.+++.++++++.++|+.|||+ +.+.+++++. .| .|+.+.|+. ..|+++|
T Consensus 171 ~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l 248 (439)
T PRK12325 171 RHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIV 248 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHHHH
Confidence 999999999999999999999 4555655541 11 133445776 7899999
Q ss_pred HhcCCCc---cccCCCCccc-cceeeEEeec--CCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 638 NSFGEPW---TENPGDGAFY-GPKIDITITD--ALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 638 ~~~g~~~---~~~~g~~afY-gpkid~~~~D--~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+..+..| ...+++++|| ||++++...+ ..|+.|++||. +|++|+++|+|+||+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~-----ys~~f~~~y~d~~g~~~~i 311 (439)
T PRK12325 249 DEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTK-----YSEPMNAKVQGPDGKEVPV 311 (439)
T ss_pred hhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCccc-----ccHhcCCEEECCCCCEEeE
Confidence 9887766 4567788999 9999998887 45888888886 5999999999999998665
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=376.45 Aligned_cols=249 Identities=20% Similarity=0.362 Sum_probs=215.9
Q ss_pred hhHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccch
Q psy10609 421 QLKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNV 494 (715)
Q Consensus 421 ~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~ 494 (715)
+++.|+..+. +++++||++||++++|||+++ .|+|+++|+|.|++|+++|++++.+.+. +.||++|.||.|.+.
T Consensus 122 ~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~ 201 (425)
T PRK05431 122 EVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNE 201 (425)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccH
Confidence 3455555444 557899999999999999986 3788999999999999999999999988 999999999999999
Q ss_pred hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeee
Q psy10609 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRR 571 (715)
Q Consensus 495 el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~RE 571 (715)
++|.+|||+++|.++||++.+ ++++|+||+|++++.++++++.||++||+|++++|+|||+|+++ .++||+|+||
T Consensus 202 ~~~~~~G~~~~f~~~ly~i~~--~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~q 279 (425)
T PRK05431 202 ESMYGTGQLPKFEEDLYKIED--DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQ 279 (425)
T ss_pred HHHhhcCccccchhhceEecC--CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeee
Confidence 999999999999999999964 68999999999999999999999999999999999999999976 3789999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE-EccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTE 646 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~-l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~ 646 (715)
|+|+|+|+||++++|.+++.++++++.++|+.|||||+++ ++++. .....|.|+|
T Consensus 280 F~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w-------------------- 339 (425)
T PRK05431 280 FDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVW-------------------- 339 (425)
T ss_pred eeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHh--------------------
Confidence 9999999999999999999999999999999999999885 44432 2344577777
Q ss_pred cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcC-CCceecccccccccCC
Q psy10609 647 NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN-VRAQTHELPRTLSDIR 708 (715)
Q Consensus 647 ~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~-dg~~~~~~~~~~~~~~ 708 (715)
.|+++.| +...+|+.+ .||| ++|++++|.++ +|+.+ +++|||+.+
T Consensus 340 ~p~~~~~-------------~ev~s~snc-~d~q-srr~~i~~~~~~~~~~~--~~htln~t~ 385 (425)
T PRK05431 340 LPSQNTY-------------REISSCSNC-TDFQ-ARRANIRYRDEGDGKPE--LVHTLNGSG 385 (425)
T ss_pred CcccCCe-------------eEEEEecCc-cchh-hhhcCcEEecCCCCcee--EEEEeCCch
Confidence 4666666 122567777 7998 99999999998 77654 369999874
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.04 Aligned_cols=250 Identities=20% Similarity=0.375 Sum_probs=211.3
Q ss_pred hhHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 421 QLKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 421 ~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
+++.|+..+. +++++||++||+++|||++++ .|+|+++|+|.|++++++|++++.+.+.+.||++|.||.|.+.+
T Consensus 125 ~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~ 204 (418)
T TIGR00414 125 EVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEE 204 (418)
T ss_pred EeeecCCCCCCCCCCCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 3455554443 567899999999999999976 36889999999999999999999999999999999999999999
Q ss_pred hhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeE
Q psy10609 496 LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRF 572 (715)
Q Consensus 496 l~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REF 572 (715)
+|.+||||++|.++||.+.+ ++++|+||+|++++.++++++.|+++||+|++++|+|||+|+++ .++||+|+|||
T Consensus 205 ~~~~~G~~~~f~~~~y~i~~--~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF 282 (418)
T TIGR00414 205 SLDGTGQLPKFEEDIFKLED--TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQF 282 (418)
T ss_pred HHhhcCccccccccceEecC--CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccce
Confidence 99999999999999999864 57999999999999999999999999999999999999999974 36899999999
Q ss_pred eEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCC-----CCHHHHHHHHHHHHHHHHhcCCCcccc
Q psy10609 573 QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYL-----GELEVWNKAEKQLEASLNSFGEPWTEN 647 (715)
Q Consensus 573 tq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~-----gd~e~w~~a~~~L~~~L~~~g~~~~~~ 647 (715)
+|+|+|+||+++++.+++.++++++.++|+.|||||++.....++... .|.|+| .
T Consensus 283 ~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w--------------------~ 342 (418)
T TIGR00414 283 NKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVW--------------------M 342 (418)
T ss_pred eeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHh--------------------C
Confidence 999999999999999999999999999999999999875433322111 245555 3
Q ss_pred CCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 648 PGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 648 ~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
|+.+.| +...+|+.+ .||| ++||+++|.|++|++.. +++|||+.+
T Consensus 343 p~~~~~-------------~ev~s~sn~-~d~q-srr~~i~y~~~~~~~~~-~vh~ln~~~ 387 (418)
T TIGR00414 343 PGQNTY-------------REISSCSNC-TDFQ-ARRLNIRYKDKNKGKNK-YVHTLNGTA 387 (418)
T ss_pred CCcCce-------------EEEEEEcCc-chHh-HHhCCcEEECCCCCceE-EEEeecCcc
Confidence 555444 122567766 8998 89999999998755433 368998875
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=365.78 Aligned_cols=265 Identities=16% Similarity=0.277 Sum_probs=220.4
Q ss_pred CCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceecc---C-CCeeEEeCcccHHHHH
Q psy10609 393 HNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE---L-SPGSCFFQPKGAFIYN 468 (715)
Q Consensus 393 ~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~---~-~~G~~~~lP~G~~l~~ 468 (715)
-||-- |+-++-.+++++|..+... +++||++||++++||||++ + |+++++|.+.|++|.+
T Consensus 115 ~VP~G---~de~~n~~vr~~g~~~~~~-------------~~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~ 178 (448)
T PLN02678 115 SVPVS---NDEANNAVVRTWGEKRQEP-------------KLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQ 178 (448)
T ss_pred cCCCC---CCcCCCEEEEEEcCCCCCC-------------CCCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHH
Confidence 36654 4555556677777654321 5789999999999999985 3 3445656669999999
Q ss_pred HHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEE
Q psy10609 469 TLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRM 548 (715)
Q Consensus 469 ~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl 548 (715)
+|++|+.+.+.+.||++|.||.|.+.++|.+||||++|.++||++.+.+++++|.||+|++.+.++++.+.++++||+|+
T Consensus 179 AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~ 258 (448)
T PLN02678 179 ALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPIRY 258 (448)
T ss_pred HHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCcee
Confidence 99999999999999999999999999999999999999999999976666889999999999999999999999999999
Q ss_pred EEeccCcccCCCC---CCCCcceeeeEeEeeEEEEeCchh--HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC-----C
Q psy10609 549 ADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE-----K 618 (715)
Q Consensus 549 ~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~~~eq--a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e-----k 618 (715)
+++|+|||+|+++ .++||+|+|||+|+|++.||.|++ |.+++++|++.++++|+.|||||++..-..++ .
T Consensus 259 ~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~ 338 (448)
T PLN02678 259 AGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAA 338 (448)
T ss_pred EEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCCchh
Confidence 9999999999983 579999999999999999999998 99999999999999999999999985433321 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCC-cee
Q psy10609 619 YLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVR-AQT 697 (715)
Q Consensus 619 ~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg-~~~ 697 (715)
...|.|+| .|+.+.| +..++||.+ .||| ++|.+|+|.+.++ ...
T Consensus 339 ~~yDiE~W--------------------~P~~~~y-------------~EvsS~Snc-~D~Q-aRRl~iryr~~~~~~~~ 383 (448)
T PLN02678 339 KKYDLEAW--------------------FPASKTY-------------RELVSCSNC-TDYQ-SRRLEIRYGQKKSNEQT 383 (448)
T ss_pred hceeeEee--------------------ccccCCc-------------eEEeeeccc-ccHh-hhcccceecccccCCCC
Confidence 12367777 5777777 233789998 8999 9999999997731 112
Q ss_pred cccccccccCC
Q psy10609 698 HELPRTLSDIR 708 (715)
Q Consensus 698 ~~~~~~~~~~~ 708 (715)
.-++|||||-+
T Consensus 384 ~~~vHTLNgt~ 394 (448)
T PLN02678 384 KQYVHLLNSTL 394 (448)
T ss_pred ceeEEecCCch
Confidence 34579999853
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=363.77 Aligned_cols=250 Identities=22% Similarity=0.343 Sum_probs=209.9
Q ss_pred hhHHHHHHHH-HHhhhhHHHHhhhcCcceeccC--CCeeEE-eCcc-cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 421 QLKEWEKLQE-EAAKRDHRKIGREQELFFFHEL--SPGSCF-FQPK-GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 421 ~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~--~~G~~~-~lP~-G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
.++.|+.+++ +++++||++||++++||||+.. .+|.++ |+|. ++++.++|++|+++.+.+.||++|.||.|++.+
T Consensus 185 ~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~ 264 (502)
T PLN02320 185 VRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSS 264 (502)
T ss_pred EEEecCCCCCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHH
Confidence 3455665555 5678999999999999999873 367777 4666 455779999999999999999999999999999
Q ss_pred hhhhhCcccccCC-CceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC--C-CCCCcceeee
Q psy10609 496 LWQTSGHWAHYSE-NMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS--G-ALTGLTRVRR 571 (715)
Q Consensus 496 l~~~sG~~~~~~~-emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~--~-~l~GL~R~RE 571 (715)
+|.+|||++.+.+ ++|.+. +++++|.||+|.++..++.+.+.++++||+|++++|+|||+|++ | .++||+|+||
T Consensus 265 l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQ 342 (502)
T PLN02320 265 VVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQ 342 (502)
T ss_pred HHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeee
Confidence 9999999888766 677664 56899999999888888889999999999999999999999999 6 5899999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE-EccCCC----CCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRPE----KYLGELEVWNKAEKQLEASLNSFGEPWTE 646 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~-l~~~~e----k~~gd~e~w~~a~~~L~~~L~~~g~~~~~ 646 (715)
|+|+|+|+||.|+|+++|+++|++++.++|+.|||+|++. ++++.- ....|.|+|
T Consensus 343 F~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW-------------------- 402 (502)
T PLN02320 343 FSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAW-------------------- 402 (502)
T ss_pred eecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEE--------------------
Confidence 9999999999999999999999999999999999997764 565531 112366777
Q ss_pred cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcC--------CCc---eecccccccccC
Q psy10609 647 NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN--------VRA---QTHELPRTLSDI 707 (715)
Q Consensus 647 ~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~--------dg~---~~~~~~~~~~~~ 707 (715)
.||.+.| +...+||++ .||| ++|.+|+|.+. +|+ ....++|||||-
T Consensus 403 ~P~~~~y-------------~EvsS~SNc-~DfQ-aRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgT 459 (502)
T PLN02320 403 MPGLGRY-------------GEISSASNC-TDYQ-SRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNAT 459 (502)
T ss_pred ecCCCcE-------------EEEeeecch-hhHh-hhcccceeccccccccccccccccCCCcceeEecccc
Confidence 6888888 223789999 9999 99999999975 343 134568999984
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=357.19 Aligned_cols=230 Identities=18% Similarity=0.290 Sum_probs=207.3
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh-hhCcccccCCCceEE
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ-TSGHWAHYSENMFSF 513 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~-~sG~~~~~~~emy~~ 513 (715)
..|.+|+++++|+|+.+ .+|+++|+|.|++++++|++++++.+.+.||++|.||.|++.++|. .+||++.|.++||.+
T Consensus 16 ~w~~~~~~~~~l~d~~~-v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v 94 (477)
T PRK08661 16 EWYNDVVKKAELADYSP-VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWV 94 (477)
T ss_pred HHHHHHHHHccCcccCC-CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEE
Confidence 45888999999999877 6899999999999999999999999999999999999999999996 489999999999999
Q ss_pred eec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE-eCchhHH
Q psy10609 514 DVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTVEQIG 587 (715)
Q Consensus 514 ~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if-~~~eqa~ 587 (715)
.+. ++.++||||+|+.++.+++++++||++||+|++|+++|||+|.++ +||+|+|||+|.|+|+| +++++|.
T Consensus 95 ~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~--rgl~R~rEF~~~E~h~~~~~~eea~ 172 (477)
T PRK08661 95 THGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKT--RPFLRTREFLWQEGHTAHATEEEAE 172 (477)
T ss_pred EccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCC--CCcceeeeEEEcceeeeeCCHHHHH
Confidence 764 368999999999999999999999999999999999999999994 69999999999999985 6668999
Q ss_pred HHHHHHHHHHHHHH-HHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCC
Q psy10609 588 DEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 666 (715)
Q Consensus 588 ~E~~~~l~~~~~il-~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~ 666 (715)
+++..+++++.+++ +.||||+.+...+ .|++ ..|+.|.+.+|+.+.|
T Consensus 173 ~e~~~~l~~y~~i~~~~Lglp~~~~~~~----------~~ek--------------------f~ga~~~~~ie~~~~d-- 220 (477)
T PRK08661 173 EETLEMLEIYKEFFEDYLAIPVIIGKKT----------EWEK--------------------FAGADYTYTIEAMMPD-- 220 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecC----------hHHh--------------------hCCCcceeEEEEEeCC--
Confidence 99999999999999 9999997765422 1321 1357778888988877
Q ss_pred CCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 667 KRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 667 gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
||.+|+||+| ||+++|+|||++|.|+||+.++|
T Consensus 221 gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v 254 (477)
T PRK08661 221 GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYV 254 (477)
T ss_pred CCEEEEEEecccccchhHhcCCEEECCCCCEeee
Confidence 8999999996 99999999999999999999887
|
|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=324.31 Aligned_cols=234 Identities=16% Similarity=0.194 Sum_probs=203.0
Q ss_pred HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC-CCceEEeecC
Q psy10609 439 KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS-ENMFSFDVEN 517 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~-~emy~~~d~~ 517 (715)
+|..+.||++..+ ++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++|+++.+. ++||.+.+.+
T Consensus 8 ~~l~~ag~~~~~~-~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~ 86 (264)
T cd00772 8 EHIGKAELADQGP-GRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAG 86 (264)
T ss_pred HHHHhcCCccccC-CCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCC
Confidence 4456668887643 6899999999999999999999999999999999999999999999999998854 8999998753
Q ss_pred -----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE-eCchhHHHHHH
Q psy10609 518 -----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTVEQIGDEIV 591 (715)
Q Consensus 518 -----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if-~~~eqa~~E~~ 591 (715)
++++||||+|++++.++++++.|+++||+|++|+++|||+|+++. +||+|+|||+|+|+|+| ++++++++|+.
T Consensus 87 ~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~-~Gl~R~reF~~~e~~~~~~~~e~a~~e~~ 165 (264)
T cd00772 87 DEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPR-FGFLRAREFIMKDGHSAHADAEEADEEFL 165 (264)
T ss_pred CCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCC-CCcceeeEEEEeeeEEecCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999997775 79999999999999999 56789999999
Q ss_pred HHHHHHHHHHHHcC-cEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcc
Q psy10609 592 GALDFLRNVYSIFG-FTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPH 670 (715)
Q Consensus 592 ~~l~~~~~il~~LG-l~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~ 670 (715)
.+++++.++++.|| +||++..++++++++|+... .|+++..+.|+..
T Consensus 166 ~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~--------------------------------~d~e~~~p~~~~~ 213 (264)
T cd00772 166 NMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKS--------------------------------REFEALMEDGKAK 213 (264)
T ss_pred HHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCC--------------------------------EEEEEECCCCCEe
Confidence 99999999999999 99999998888877766533 3556666667777
Q ss_pred ccccce--eccCcccccC--cEEEcCCCceecccccccccCCCC
Q psy10609 671 QCATIQ--LDFQLPIRFN--LAYVKNVRAQTHELPRTLSDIRPS 710 (715)
Q Consensus 671 q~~TiQ--lDf~~~~rf~--l~Y~~~dg~~~~~~~~~~~~~~~~ 710 (715)
++++.+ .|+| +++|+ |+|.|++|+.+++ +| |+++-+
T Consensus 214 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~--~~-n~~gi~ 253 (264)
T cd00772 214 QAETGHIFGEGF-ARAFDLKAKFLDKDGKEKFF--EM-GCWGIG 253 (264)
T ss_pred EEEeeeeccCCc-hhhcCCccEEECCCCCEEEE--Ee-ccccch
Confidence 777766 3666 99777 9999999987655 66 877643
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=352.96 Aligned_cols=238 Identities=20% Similarity=0.340 Sum_probs=208.7
Q ss_pred CChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh
Q psy10609 417 PDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 496 (715)
Q Consensus 417 ~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el 496 (715)
+.++++.+|.. +|..+.+|+++.+ .+|+++|+|.|+.+++.|++++++.++++||++|.||.|++.++
T Consensus 3 ~~~~~f~~wy~-----------~l~~~~~li~~~~-~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~ 70 (472)
T TIGR00408 3 SKMQDFSEWYH-----------QILEKAEIIDYYP-VKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESE 70 (472)
T ss_pred cccccHHHHHH-----------HHHHHcCCccccC-CCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHH
Confidence 34567777874 3567789988844 58999999999999999999999999999999999999999999
Q ss_pred hhhh-CcccccCCCceEEeecC-----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceee
Q psy10609 497 WQTS-GHWAHYSENMFSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVR 570 (715)
Q Consensus 497 ~~~s-G~~~~~~~emy~~~d~~-----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~R 570 (715)
|.++ +|+++|.++||.+.+.+ ++++||||+|++++.+|+++++||++||+|++|+++|||+|.++. +||+|+|
T Consensus 71 ~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~-~gl~R~r 149 (472)
T TIGR00408 71 LAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHT-RPFLRTR 149 (472)
T ss_pred HHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCC-CCcceee
Confidence 9875 59999999999998753 789999999999999999999999999999999999999999986 8999999
Q ss_pred eEeEeeEE-EEeCchhHHHHHHHHHHHHHHHHH-HcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 571 RFQQDDAH-IFCTVEQIGDEIVGALDFLRNVYS-IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 571 EFtq~d~~-if~~~eqa~~E~~~~l~~~~~il~-~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
||+|.|+| +||++++|.+++..+++++.++++ .||||+.+...+..+++.|+.
T Consensus 150 EF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~------------------------- 204 (472)
T TIGR00408 150 EFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAE------------------------- 204 (472)
T ss_pred eeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCcc-------------------------
Confidence 99999999 578889999999999999999998 999998776544334443433
Q ss_pred CCCccccceeeEEeecCCCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 649 GDGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 649 g~~afYgpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+...+|+.+.| ||.+|+||+| ||+++|+||+|+|.|+||+.++|
T Consensus 205 -----~~~~~e~~~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~ 249 (472)
T TIGR00408 205 -----YTWAFETIMPD--GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYA 249 (472)
T ss_pred -----ceEEEeEEEcC--CCEEEEeeeecccccccHhcCCEEECCCCCEEee
Confidence 33346666666 7999999999 99999999999999999988766
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=320.86 Aligned_cols=233 Identities=17% Similarity=0.264 Sum_probs=194.2
Q ss_pred HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-C
Q psy10609 439 KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-N 517 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~ 517 (715)
+|..+.|+++ ..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+++||++.+.++||.+.+. +
T Consensus 8 ~l~~~ag~~~--~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~ 85 (255)
T cd00779 8 KLLLRAGFIR--QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHG 85 (255)
T ss_pred HHHHHcCCcc--cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCC
Confidence 3444556653 457999999999999999999999999999999999999999999999999999999999999875 6
Q ss_pred ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHH
Q psy10609 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDF 596 (715)
Q Consensus 518 ~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~ 596 (715)
++++||||+|+.++.++++++.|+++||+|++|+|+|||+|.++. +||+|+|||+|+|+|+||.+ ++|++++.+++.+
T Consensus 86 ~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~-~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 86 KEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred CeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCC-CceeeeeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999996554 79999999999999999997 5999999999999
Q ss_pred HHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccce
Q psy10609 597 LRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 676 (715)
Q Consensus 597 ~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQ 676 (715)
+.++|+.|||+|++..+++ +.+|.... -+.|+...-+.++..++|++.
T Consensus 165 ~~~il~~Lgl~~~~~~~~~--~~~gg~~s------------------------------~~~~~e~~~~~~~~~e~~s~~ 212 (255)
T cd00779 165 YSRIFKRLGLPFVKVEADS--GAIGGSLS------------------------------HEFHVLSPLKITKGIEVGHIF 212 (255)
T ss_pred HHHHHHHcCCcEEEEEecC--CCCCCccc------------------------------EEEEEEEecCCCCeEEEEeee
Confidence 9999999999998877543 22333211 112333322334456666666
Q ss_pred --eccCcccccCcEEEcCCCceecccccccccCCCC
Q psy10609 677 --LDFQLPIRFNLAYVKNVRAQTHELPRTLSDIRPS 710 (715)
Q Consensus 677 --lDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~~~ 710 (715)
.|+| ++||+|+|.|++|+.+++ +| |+++-+
T Consensus 213 ~lg~~~-sr~~~i~~~~~~~~~~~~--~~-~~~gi~ 244 (255)
T cd00779 213 QLGTKY-SKALGATFLDENGKPKPL--EM-GCYGIG 244 (255)
T ss_pred ecchhH-HHhcCcEEECCCCCEEee--Ee-cCccch
Confidence 3666 999999999999988666 55 877643
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=334.42 Aligned_cols=253 Identities=22% Similarity=0.398 Sum_probs=222.8
Q ss_pred CCChhhhHHHHHHH---HHHhhhhHHHHhhhcCcceeccC----CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEec
Q psy10609 416 FPDNKQLKEWEKLQ---EEAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVS 488 (715)
Q Consensus 416 ~~~~~~L~~~~~~~---ee~~~rdH~~Lg~~l~Lf~~~~~----~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~t 488 (715)
-.++..++.|+..+ -++++++|++||..+++.||+.+ |+|+++|.+.|++|.++|.+|+.+.+.+.||+++.+
T Consensus 119 e~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~ 198 (429)
T COG0172 119 EDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLP 198 (429)
T ss_pred cccceEEEEEecCccccccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeC
Confidence 34566777788764 37789999999999999999973 688999999999999999999999999999999999
Q ss_pred CcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCC
Q psy10609 489 PNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTG 565 (715)
Q Consensus 489 P~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~G 565 (715)
|.|++.+++.++|++++|.++||++.+. .|+|.||+|.+++.++++++.+..+||++++.+++|||.|++. .++|
T Consensus 199 P~lv~~e~m~gtgqlpkf~e~~y~v~~~--~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrG 276 (429)
T COG0172 199 PYLVNLESMFGTGQLPKFEEDLYKVEDP--DLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRG 276 (429)
T ss_pred ceeecHHHhhccCCCCCCcccceEecCC--CEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccc
Confidence 9999999999999999999999999775 8999999999999999999998889999999999999999986 2699
Q ss_pred cceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEE-ccCCCCC----CCCHHHHHHHHHHHHHHHHhc
Q psy10609 566 LTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL-STRPEKY----LGELEVWNKAEKQLEASLNSF 640 (715)
Q Consensus 566 L~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l-~~~~ek~----~gd~e~w~~a~~~L~~~L~~~ 640 (715)
|+|+|||.++|+..||.|+++..++++|+..++++++.|+|||++.. ++.+-+| ..|.|+|
T Consensus 277 liRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvW-------------- 342 (429)
T COG0172 277 LIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVW-------------- 342 (429)
T ss_pred eeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEE--------------
Confidence 99999999999999999999999999999999999999999988864 5543211 2366667
Q ss_pred CCCccccCCCCccccceeeEEeecCCCCc-cccccceeccCcccccCcEEEc-CCCceecccccccccCC
Q psy10609 641 GEPWTENPGDGAFYGPKIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVK-NVRAQTHELPRTLSDIR 708 (715)
Q Consensus 641 g~~~~~~~g~~afYgpkid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~-~dg~~~~~~~~~~~~~~ 708 (715)
.|+.+.| |+ ++||++ .||| ++||+++|.+ .+|+. -++|||||.+
T Consensus 343 ------lP~q~~y--------------rEisScSnc-~DfQ-aRR~~~Ryr~~~~~k~--~~vhTLNGsg 388 (429)
T COG0172 343 ------LPGQNKY--------------REISSCSNC-TDFQ-ARRLNIRYRDKEEGKR--EFVHTLNGSG 388 (429)
T ss_pred ------ecCCCCc--------------eeeeeeecc-ccHH-HHHHhcccccccCCCc--EEEEeccchH
Confidence 5777777 55 889999 8999 9999999986 55555 3479999975
|
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=292.29 Aligned_cols=212 Identities=23% Similarity=0.358 Sum_probs=194.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-----CceEEEecCChHHHHHHHHhh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHR 537 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~ 537 (715)
|+.++++|++++++.+.++||++|.||.|++.++|..+||++.+.++||.+.+. ++.++||||+|++++.+++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 688999999999999999999999999999999999999999999999999875 478999999999999999999
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE 617 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e 617 (715)
..++++||+|++++|+|||+|.++. +|+.|+|||+|.|+|+||.++++.++..++++++.++++.||+++++.+++.++
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~-~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~ 159 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPF 159 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCC-CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChh
Confidence 9998999999999999999999987 799999999999999999998888888999999999999999999999987754
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCC-CCccccccceeccCcccccCcEEEcCCCce
Q psy10609 618 KYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL-KRPHQCATIQLDFQLPIRFNLAYVKNVRAQ 696 (715)
Q Consensus 618 k~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~-gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~ 696 (715)
...+.. .|.++|+++++|+.+.++. |+.++++++|.+++++.|+...|++.+|..
T Consensus 160 ~~~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 215 (235)
T cd00670 160 FGRGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGGG 215 (235)
T ss_pred hccCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCCCc
Confidence 332222 5567788999999999999 999999999999999999999999988877
Q ss_pred ecc
Q psy10609 697 THE 699 (715)
Q Consensus 697 ~~~ 699 (715)
.+|
T Consensus 216 ~~~ 218 (235)
T cd00670 216 RAH 218 (235)
T ss_pred eee
Confidence 555
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=320.11 Aligned_cols=183 Identities=22% Similarity=0.418 Sum_probs=169.0
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+.+++...|+.|.++ +++ .+.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+++|||+.+.+
T Consensus 15 p~~~~~~s~~ll~~a-g~i--~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~ 91 (565)
T PRK09194 15 PADAEVISHQLLLRA-GYI--RKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGP 91 (565)
T ss_pred ccccchhhHHHHHhC-CCc--cccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccch
Confidence 335677899999988 554 55689999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.+.++ +++++||||+|+.++.++++++.||++||+|+||+++|||+|.+++ +||+|+|||+|.|+|+||.+ +++
T Consensus 92 emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~-~Gl~R~reF~q~d~~~f~~~~~~a 170 (565)
T PRK09194 92 ELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFIMKDAYSFHADEESL 170 (565)
T ss_pred hceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCC-CcccccccEEEeeEEEEcCChHHH
Confidence 99999876 7899999999999999999999999999999999999999996665 79999999999999999986 588
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEccC
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLSTR 615 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~~ 615 (715)
++++.++++++.++|++|||+|++..+++
T Consensus 171 ~~~~~~~~~~~~~i~~~lgl~~~~~~~~~ 199 (565)
T PRK09194 171 DETYDAMYQAYSRIFDRLGLDFRAVEADS 199 (565)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEEccc
Confidence 99999999999999999999999886654
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=314.77 Aligned_cols=228 Identities=18% Similarity=0.280 Sum_probs=183.7
Q ss_pred HHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHHH--cCcEEEecCcccchhhhhhhCcccccCCCceE
Q psy10609 439 KIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYRK--RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~~--~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~ 512 (715)
.+.++-+.|.... + .+|++||+|.|+.|+++|+++|++.+.+ .||.+|.||++.+.++|++||||++|.+.||.
T Consensus 9 ~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~ 88 (456)
T PRK04173 9 SLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVE 88 (456)
T ss_pred HHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeE
Confidence 4555556554432 1 3899999999999999999999999987 79999999999999999999999999999998
Q ss_pred Eee-------c---------------------------------C------------------------ceEEEecCChH
Q psy10609 513 FDV-------E---------------------------------N------------------------ETYALKPMNCP 528 (715)
Q Consensus 513 ~~d-------~---------------------------------~------------------------~~l~LRPt~e~ 528 (715)
... + + ...+|||+++.
T Consensus 89 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaq 168 (456)
T PRK04173 89 CKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQ 168 (456)
T ss_pred eCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccch
Confidence 741 0 0 12345555555
Q ss_pred HHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++...|+++++||+ +||+|++|+|+|||+|.++. +||+|+|||+|+|+|+||+|+|+.+|+..+++++.+++..||++
T Consensus 169 g~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~-~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~ 247 (456)
T PRK04173 169 GIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPR-NFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGID 247 (456)
T ss_pred hHHHHHHHHHHhccccCCeeeeEEchhHhCccCCC-CCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCC
Confidence 55555788899999 99999999999999999984 99999999999999999999999999999999999999999997
Q ss_pred -EEEEEccCC--CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcccc-c--cceeccCc
Q psy10609 608 -FNLRLSTRP--EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC-A--TIQLDFQL 681 (715)
Q Consensus 608 -~~v~l~~~~--ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~-~--TiQlDf~~ 681 (715)
+++++++++ +.+.|+.++|+.. + .++.|+.|++ + +.+.||++
T Consensus 248 ~~~~~~s~~~~~e~~~ys~~~wd~e------~--------------------------~~~~g~~~~e~~g~~~~~dydL 295 (456)
T PRK04173 248 PENLRFREHLPEELAHYSKATWDIE------Y--------------------------KFPFGRFWGELEGIANRTDYDL 295 (456)
T ss_pred ccceEEEecCcchhhccHHHHHhHH------H--------------------------hCCCCCcEEEEeeeeccchhhc
Confidence 778888774 4677889999741 1 1223444432 2 34567777
Q ss_pred cc-----ccCcEEE--cCCCceecc
Q psy10609 682 PI-----RFNLAYV--KNVRAQTHE 699 (715)
Q Consensus 682 ~~-----rf~l~Y~--~~dg~~~~~ 699 (715)
+. ||+++|+ +.||++.+|
T Consensus 296 ~~~~~~s~~dl~y~~~~~~~~~~~P 320 (456)
T PRK04173 296 SRHSKHSGEDLSYFDDETTGEKYIP 320 (456)
T ss_pred ccchhhcCCCeEEEecCCCCceeee
Confidence 64 8999999 567887766
|
|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=310.96 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=195.7
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHH-HHHcCcEEEecCcccchhhh
Q psy10609 420 KQLKEWEKLQE-EAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSE-YRKRGFQEVVSPNVYNVKLW 497 (715)
Q Consensus 420 ~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~-~~~~Gy~eV~tP~L~~~el~ 497 (715)
..+++++ .++ .+. ++|.+++.++|+++- -.++|++.|+|.|++|+++|++++++. ..+.||++|.+|.|.+.++|
T Consensus 181 ~~~~~~~-~~~~~F~-~~h~el~~~~glldk-~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell 257 (517)
T PRK00960 181 TIVSESK-KREITFD-GDPTEEAEKLGWVKR-FPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVM 257 (517)
T ss_pred eEEEEeC-CCCCCCC-CCHHHHHHHCCCccc-cCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHH
Confidence 5556666 333 445 999999999999982 347999999999999999999999986 57889999999999999999
Q ss_pred hhhCcccccCCCceEEeec------------------------------CceEEEecCChHHHHHHHHhhhcccCCCCeE
Q psy10609 498 QTSGHWAHYSENMFSFDVE------------------------------NETYALKPMNCPGHCLIFDHRVRSWRELPLR 547 (715)
Q Consensus 498 ~~sG~~~~~~~emy~~~d~------------------------------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlr 547 (715)
.+|||+++|.++||.+... ++.|+||||+|++++.+|+++++|+++||+|
T Consensus 258 ~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLr 337 (517)
T PRK00960 258 YKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIK 337 (517)
T ss_pred hhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHH
Confidence 9999999999999988520 2468999999999999999999999999999
Q ss_pred EEE-eccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCCCCCCCCHHH
Q psy10609 548 MAD-FGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEV 625 (715)
Q Consensus 548 l~~-~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~ 625 (715)
+++ +|+|||+|. |.++||+|+|||+|.|+|+||+++|+.+++.+++..+..+++.|||+ |++..++. |++...
T Consensus 338 l~e~sG~cFR~Es-Gs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DP---Ff~~~~- 412 (517)
T PRK00960 338 FFDRSGWTYRWEG-GGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDDP---FYLEGR- 412 (517)
T ss_pred HhhccCCceeCCC-CCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEecccc---cccccC-
Confidence 999 669999995 45699999999999999999999999999999999999999999999 66654331 211100
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC----CCC--ccccccceeccCcccccCcEEEcCCCce
Q psy10609 626 WNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA----LKR--PHQCATIQLDFQLPIRFNLAYVKNVRAQ 696 (715)
Q Consensus 626 w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~----~gr--~~q~~TiQlDf~~~~rf~l~Y~~~dg~~ 696 (715)
+.... +.+..+. .+.|+.+.-+ .|+ +.|..+.+.|+| ++||+|+| .+|+.
T Consensus 413 ---------------k~~~~-d~~f~~~--~tydiE~wmP~~~~~gk~~ev~S~S~hgd~f-arrfnIk~--~~g~~ 468 (517)
T PRK00960 413 ---------------GLEDR-GIEFPDV--PKYEMELWLPYRGDERKWVAVTSANVHGTHF-VEGFNIKD--YKGRK 468 (517)
T ss_pred ---------------ccccc-cccCccc--cceeEEEEecCccCCCCEEEEEeeeeccchh-hHhhCccc--CCCCe
Confidence 00000 0011122 2344444333 344 666667778999 99999987 34443
|
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.84 Aligned_cols=233 Identities=21% Similarity=0.325 Sum_probs=204.1
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+++|..-.|.-|-++ ++++. .++|++.|+|.|.++++++++.+++++.+.|.++|.+|.|.+.+||+.||||+.|++
T Consensus 15 p~da~~~sh~ll~rA-g~i~~--~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~ 91 (500)
T COG0442 15 PADASEWSHQLLLRA-GMIRK--PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGP 91 (500)
T ss_pred cchhHHHHHHHHHhc-Cceec--ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcch
Confidence 446666678777665 55544 679999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.++++ ++.++||||+|..++.+++++++||++||+++|||+++||+|.+++ +||+|.|||+|.|+|+|+.+ ++|
T Consensus 92 El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr-~gllR~REF~mkdaySfh~~~e~a 170 (500)
T COG0442 92 ELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPR-FGLLRGREFLMKDAYSFHADEEDA 170 (500)
T ss_pred hhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCC-CCccchheeeecccccccCCHHHH
Confidence 99999997 7899999999999999999999999999999999999999999988 89999999999999999998 699
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCC
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 666 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~ 666 (715)
++++.+++++|.++|.++|+.|..+-. .++++|.... .+|+..-..
T Consensus 171 ~~~y~~~~~~Y~~if~~i~l~~~~~~a--d~g~~Gg~~S--------------------------------~eF~~l~pd 216 (500)
T COG0442 171 EETYEKMLDAYSRIFLRLPLIFGPVPA--DEGFIGGSYS--------------------------------HEFEALMPD 216 (500)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecc--cCCCCCCccc--------------------------------eEEEEEccC
Confidence 999999999999999888887765532 2466655433 356666667
Q ss_pred CCccccccce-eccCccccc-CcEEEcCC-Cceecc
Q psy10609 667 KRPHQCATIQ-LDFQLPIRF-NLAYVKNV-RAQTHE 699 (715)
Q Consensus 667 gr~~q~~TiQ-lDf~~~~rf-~l~Y~~~d-g~~~~~ 699 (715)
|++.|++|++ +..|+.+-| +++|.+++ ++..++
T Consensus 217 ~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v 252 (500)
T COG0442 217 GGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYV 252 (500)
T ss_pred CCccEEEEecchHHhHHHhccCCCccccccccceEe
Confidence 9999999999 777888899 99999988 555444
|
|
| >KOG2509|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=294.66 Aligned_cols=238 Identities=18% Similarity=0.329 Sum_probs=208.8
Q ss_pred HHhhhhHHHHhhhcCcceeccC--CCee--EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccccc
Q psy10609 431 EAAKRDHRKIGREQELFFFHEL--SPGS--CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHY 506 (715)
Q Consensus 431 e~~~rdH~~Lg~~l~Lf~~~~~--~~G~--~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~ 506 (715)
+++...|..|++.+|+++.+.. .+|. |++.+.|+.|.++|++|..+.+.+.||.++.||.|.+.+++..||+.+.+
T Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~ 227 (455)
T KOG2509|consen 148 EFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRF 227 (455)
T ss_pred ccccccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCC
Confidence 5556789999999999988874 3554 66778899999999999999999999999999999999999999999999
Q ss_pred CCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeEeEeeEEEEeCc
Q psy10609 507 SENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTV 583 (715)
Q Consensus 507 ~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~~~ 583 (715)
.+++|...+++++.+|..|+|.+++.+++++.....+||+|++.+|+|||.|++. ..+||||||||+++|++++|.|
T Consensus 228 d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~P 307 (455)
T KOG2509|consen 228 DEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGP 307 (455)
T ss_pred CcceEEeecCCccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCc
Confidence 9999998888888999999999999999998888889999999999999999953 3789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc
Q psy10609 584 EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRP-------EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP 656 (715)
Q Consensus 584 eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~-------ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp 656 (715)
+++.+++++|+.+++++|++|||||++.---.+ .|| |.|.| .||.|+|
T Consensus 308 e~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~eLg~aAakKy--DiEAW--------------------mPgrg~y--- 362 (455)
T KOG2509|consen 308 EDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKY--DIEAW--------------------MPGRGAY--- 362 (455)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCceeEecCCchhhCcHHHhhc--chhhh--------------------cCccccc---
Confidence 999999999999999999999999998521111 243 77778 6888899
Q ss_pred eeeEEeecCCCCccccccceeccCcccccCcEEE---cCCCceecccccccccC
Q psy10609 657 KIDITITDALKRPHQCATIQLDFQLPIRFNLAYV---KNVRAQTHELPRTLSDI 707 (715)
Q Consensus 657 kid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~---~~dg~~~~~~~~~~~~~ 707 (715)
|.-.+||.| .||| +||++|+|. ..||+.+| +||||+-
T Consensus 363 ----------gEl~ScSNC-TDyQ-SRRL~IRy~~~k~~~~~~~y--vHtLN~T 402 (455)
T KOG2509|consen 363 ----------GELVSCSNC-TDYQ-SRRLGIRYGQKKTNDGEKKY--VHTLNGT 402 (455)
T ss_pred ----------ccccccccc-hhHH-HhhhhhhcccccccCCccce--eeecchh
Confidence 444899999 9999 999999999 46666654 5999973
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=297.82 Aligned_cols=183 Identities=23% Similarity=0.415 Sum_probs=169.0
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+.+++...|+.|.+. |++ .+.++|+++|+|.|++++++|++++++++.++||++|.||.|++.++|+.+|||+.+.+
T Consensus 15 p~~~~~~s~~ll~ra-g~i--~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~ 91 (568)
T TIGR00409 15 PADAEVKSHQLLLRA-GFI--RRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGP 91 (568)
T ss_pred CcccchhhHHHHHhC-CCc--cccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccch
Confidence 445677889888877 454 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||++.++ +++++||||+|+.++.++++++.||++||+|+||+++|||+|.+++ +||+|+|||+|.|+|+||.+ +++
T Consensus 92 emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr-~Gl~R~REF~~~d~~~f~~~~~~a 170 (568)
T TIGR00409 92 ELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFIMKDAYSFHSDEESL 170 (568)
T ss_pred hcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCC-CCccccccEEEEEEEEEeCChHHH
Confidence 99999886 7899999999999999999999999999999999999999997666 79999999999999999998 588
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEccC
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLSTR 615 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~~ 615 (715)
++++..+++++.++|++|||+|++..+.+
T Consensus 171 ~~e~~~~~~~y~~if~~LgL~~~~v~~~~ 199 (568)
T TIGR00409 171 DATYQKMYQAYSNIFSRLGLDFRPVQADS 199 (568)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEecc
Confidence 89999999999999999999998876665
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-30 Score=253.79 Aligned_cols=160 Identities=38% Similarity=0.760 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcc-cC
Q psy10609 466 IYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRS-WR 542 (715)
Q Consensus 466 l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s-~~ 542 (715)
|+++|++++++.+. +.||++|.||.|++.++|.++||++.+.++||.+.+. +++++||||+|++++.++++...+ ++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 68999999999999 9999999999999999999999999999999999886 467999999999999999999999 99
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCc-EEEEEEccCCC----
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLSTRPE---- 617 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl-~~~v~l~~~~e---- 617 (715)
+||++++++|+|||+|.++. +||+|+|||+|.|+|+||.++++.+++.++++.+.++++.||| +|+++.+++++
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~-~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~ 159 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPT-RGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAY 159 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSB-STTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTT
T ss_pred cCCeEEeecccccccccccc-cccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCC
Confidence 99999999999999998554 8999999999999999999999999999999999999999999 89999988854
Q ss_pred -CCCCCHHHH
Q psy10609 618 -KYLGELEVW 626 (715)
Q Consensus 618 -k~~gd~e~w 626 (715)
++.++.|.|
T Consensus 160 ~~~~~d~e~~ 169 (173)
T PF00587_consen 160 AKYEFDIEAW 169 (173)
T ss_dssp SSEEEEEEEE
T ss_pred HHHcccHHHh
Confidence 334445544
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=280.99 Aligned_cols=229 Identities=18% Similarity=0.253 Sum_probs=188.3
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHH-HHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRS-EYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~-~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
++|.+|+++++|++- -.++|+++|.|.|+.|+++|++++.+ .+++.||++|.+|.|.+.+++.++||+++|.++||.+
T Consensus 195 ~~h~el~~k~glidk-~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~V 273 (520)
T TIGR00415 195 GDPTDEAEKLGWVKK-FPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYC 273 (520)
T ss_pred CCHHHHHHHCCCeeE-EcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEE
Confidence 899999999999863 24799999999999999999999976 4577899999999999999999999999999999988
Q ss_pred ee------------------------------cCceEEEecCChHHHHHHHHhhhcccCCCCeEEEE-eccCcccCCCCC
Q psy10609 514 DV------------------------------ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD-FGVLHRNELSGA 562 (715)
Q Consensus 514 ~d------------------------------~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~-~g~~FR~E~~~~ 562 (715)
.. +...++|+||+|++++.++++++.++++||+|+++ +++|||+|.++.
T Consensus 274 t~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGst 353 (520)
T TIGR00415 274 CAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGA 353 (520)
T ss_pred ecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCC
Confidence 42 12378999999999999999999999999999999 568999999875
Q ss_pred CCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy10609 563 LTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGE 642 (715)
Q Consensus 563 l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~ 642 (715)
+||+|+|||+|.|+|.+|++++|.+++.++++.+.++++.|||+|++..++-| |++..-
T Consensus 354 -rGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDP--Ff~~g~------------------ 412 (520)
T TIGR00415 354 -KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDP--FYLEGR------------------ 412 (520)
T ss_pred -CCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCc--cccccc------------------
Confidence 89999999999999999999999999999999999999999999999854421 111000
Q ss_pred CccccCCCCccc-cceeeEEeec------CCCCccccccceeccCcccccCcE
Q psy10609 643 PWTENPGDGAFY-GPKIDITITD------ALKRPHQCATIQLDFQLPIRFNLA 688 (715)
Q Consensus 643 ~~~~~~g~~afY-gpkid~~~~D------~~gr~~q~~TiQlDf~~~~rf~l~ 688 (715)
+- ..++-.|- ..|.|+.+.- ..|+..|.+|.|-| +++++|+|+
T Consensus 413 k~--~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~-hF~k~F~I~ 462 (520)
T TIGR00415 413 KK--EDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGT-HFIEGFRIK 462 (520)
T ss_pred Cc--ccccccCcccceEEEEEEEccccCCCCCcEEEEeechhc-ccccccCcc
Confidence 00 00111122 2345554422 25788999999955 559999999
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=289.39 Aligned_cols=213 Identities=27% Similarity=0.352 Sum_probs=192.7
Q ss_pred eecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCccccc
Q psy10609 180 MYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKS 259 (715)
Q Consensus 180 ~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~l 259 (715)
+...+.++.+|+++|++|+++|.++++.+..++|+|++|||+.+++++|++|+.|||+.+++.++..+|+|+|||++++
T Consensus 19 ~~~~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~d- 97 (686)
T PLN02908 19 EEYLSAVIKKRIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWD- 97 (686)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEee-
Confidence 3334678899999999999999999999988999999999999999999999999999999999999999999999885
Q ss_pred CCccccccCccccccCCCChHH-------HHHHHHHHHHhcCC--------Cc--e----------eecCHHHHHHHHhc
Q psy10609 260 RGNELCESSQYFSLVSTLDFPV-------MEGLMKDIVKEKQP--------FE--R----------LEMKKEDLIEMFKY 312 (715)
Q Consensus 260 dl~~~i~~~~~ve~It~~d~~g-------Le~lm~~aV~~l~P--------~~--r----------~~vs~eda~~If~~ 312 (715)
++++++.||.++|++.++.+| +.++|..|+.+.+. +. . ..+|.+|+.+|.+
T Consensus 98 -L~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~- 175 (686)
T PLN02908 98 -MTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEA- 175 (686)
T ss_pred -cCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCHHHHHHHHH-
Confidence 689999999999999999877 57899999988762 21 1 1478899999999
Q ss_pred ChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCc
Q psy10609 313 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGP 392 (715)
Q Consensus 313 ~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP 392 (715)
.|.+||+++.|+++.. +++++|.++|+++++|++|++..++.++|++|+||+|+|||+||
T Consensus 176 --~m~~iI~~~~pi~r~~------------------v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~~D~c~Gp 235 (686)
T PLN02908 176 --RAEKAVKEKQPFERIE------------------VTREEALEMFSENKFKVEIINDLPEDATITVYRCGPLVDLCRGP 235 (686)
T ss_pred --HHHHHHhcCCCeEEEE------------------EcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCEEEecCCC
Confidence 8999999999999885 79999999999999999999987656689999999999999999
Q ss_pred CCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 393 HNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 393 ~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
||||| |.++.|+|+++++++|..
T Consensus 236 hv~sT---g~ik~f~l~~~~~~~~lg 258 (686)
T PLN02908 236 HIPNT---SFVKAFACLKASSAYWRG 258 (686)
T ss_pred CCCCC---CccceeEEEEecceEEcC
Confidence 99999 779999999999999873
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=265.13 Aligned_cols=226 Identities=16% Similarity=0.261 Sum_probs=183.9
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-C-cccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-G-HWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G-~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|++||+|..+..++.|++.+++.+.++||++|.||+|++.++|.++ | +++.+.++||+|.|. |+.++|||+.|+
T Consensus 6 ~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~ 85 (430)
T CHL00201 6 AIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTA 85 (430)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcH
Confidence 3689999999999999999999999999999999999999999999875 5 777788999999875 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++.....+++.+|+|+||+|+|||+|+++. | |+|||+|+|+|+||.++ .+|+| ++.++.++|+.||++
T Consensus 86 ~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~--G--R~Ref~Q~g~EiiG~~~~~aD~E---vi~l~~~~l~~lGl~ 158 (430)
T CHL00201 86 GIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQS--G--RQRQFHQLGIEFIGSIDARADTE---VIHLAMQIFNELQVK 158 (430)
T ss_pred HHHHHHHHccccccCCCeEEEEEcceecCCCCcC--C--ccceeEEeceEEECCCChhhHHH---HHHHHHHHHHHcCCC
Confidence 9999987666667789999999999999999995 8 99999999999999985 66766 689999999999997
Q ss_pred -EEEEEccCCC----------------CC---C---------------------CCHHHHH-----------HHHHHHH-
Q psy10609 608 -FNLRLSTRPE----------------KY---L---------------------GELEVWN-----------KAEKQLE- 634 (715)
Q Consensus 608 -~~v~l~~~~e----------------k~---~---------------------gd~e~w~-----------~a~~~L~- 634 (715)
|++.+++++- ++ + ++.+.++ .+.+.|.
T Consensus 159 ~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~ 238 (430)
T CHL00201 159 NLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYD 238 (430)
T ss_pred ceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHH
Confidence 9999987431 00 0 0111221 1222233
Q ss_pred --HHHHhcCCCccccCC---CCccc-cceeeEEeecCCCCccccccceeccCccccc
Q psy10609 635 --ASLNSFGEPWTENPG---DGAFY-GPKIDITITDALKRPHQCATIQLDFQLPIRF 685 (715)
Q Consensus 635 --~~L~~~g~~~~~~~g---~~afY-gpkid~~~~D~~gr~~q~~TiQlDf~~~~rf 685 (715)
+.|+..|+++.++++ ..+|| |+++|+...+..++.+.||+=..| ++..+|
T Consensus 239 ~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD-~L~~~f 294 (430)
T CHL00201 239 VCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYD-SLIHQL 294 (430)
T ss_pred HHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchH-HHHHHh
Confidence 556677888888887 45899 789999887766777888887777 334444
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=238.96 Aligned_cols=196 Identities=21% Similarity=0.195 Sum_probs=161.0
Q ss_pred HHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcC--cEEEecCcccchhhhhhh-CcccccCCCce
Q psy10609 439 KIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRG--FQEVVSPNVYNVKLWQTS-GHWAHYSENMF 511 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~G--y~eV~tP~L~~~el~~~s-G~~~~~~~emy 511 (715)
+|.++.+++.... ..+|+++|+|.|+.++++|++++++.+.++| |++|.||+|++.++|... |+++
T Consensus 3 ~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d------- 75 (254)
T cd00774 3 ELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE------- 75 (254)
T ss_pred hHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC-------
Confidence 4555556554331 1489999999999999999999999999996 999999999998666542 4331
Q ss_pred EEeecCceEEEecCChHHHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHH
Q psy10609 512 SFDVENETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 590 (715)
Q Consensus 512 ~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~ 590 (715)
++++.++||||+|++++..+++...+++ +||+|++|+|+|||+|.+++ +||+|+|||+|+|+|+||+++|+.+++
T Consensus 76 ---~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~-~gl~R~ReF~q~d~~~f~~~~~~~e~~ 151 (254)
T cd00774 76 ---SGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFTQAEIEFFVDPEKSHPWF 151 (254)
T ss_pred ---CCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcc-cceeeeccchhhheeeeECCCCchHHH
Confidence 2356889999999999988888777665 99999999999999999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcE---EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q psy10609 591 VGALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWT 645 (715)
Q Consensus 591 ~~~l~~~~~il~~LGl~---~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~ 645 (715)
..+++.+.++++++|++ +++......+.-+.+.+.|+.+.+.-..+++..|++..
T Consensus 152 ~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~~~ 209 (254)
T cd00774 152 DYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFPHGFLELEGIANR 209 (254)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHhhhHHHHcCCCcc
Confidence 99999999999999985 45544333344455677888777777788888998755
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-24 Score=235.89 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=140.8
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcc-cccCCCceEEeec-CceEEEecCChHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHW-AHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~-~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
++|++||+|..+.+|+.+++.+++.++++||.+|.||++++.++|.+ +|.. +...++||.|.|+ |+.++|||+.+++
T Consensus 7 prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tap 86 (429)
T COG0124 7 PRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAP 86 (429)
T ss_pred CCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHH
Confidence 68999999999999999999999999999999999999999999975 4532 3367999999997 8999999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++.+....... .+|+|+|++|+|||+|+||+ | |+|||+|+|+++||.+. .+|+| ++.++.+++++|||.
T Consensus 87 v~R~~~en~~~~-~~p~k~yy~g~vfRyErPQ~--G--R~RqF~Q~g~E~iG~~~~~~DAE---vi~l~~~~l~~lGi~~ 158 (429)
T COG0124 87 VARAVAENKLDL-PKPLKLYYFGPVFRYERPQK--G--RYRQFYQFGVEVIGSDSPDADAE---VIALAVEILEALGIGG 158 (429)
T ss_pred HHHHHHhccccc-cCCeeEEEecceecCCCCCC--C--CceeeEEcCeEEeCCCCcccCHH---HHHHHHHHHHHcCCCc
Confidence 999887655433 48999999999999999995 9 99999999999999985 88999 689999999999998
Q ss_pred EEEEEccCC
Q psy10609 608 FNLRLSTRP 616 (715)
Q Consensus 608 ~~v~l~~~~ 616 (715)
|++++++++
T Consensus 159 ~~l~iN~~g 167 (429)
T COG0124 159 FTLEINSRG 167 (429)
T ss_pred EEEEEcCcc
Confidence 999998874
|
|
| >KOG2324|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=223.97 Aligned_cols=174 Identities=21% Similarity=0.376 Sum_probs=159.2
Q ss_pred HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-C
Q psy10609 439 KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-N 517 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~ 517 (715)
+|..++|+ +.+.++|++-|+|.|.+..+++.+.+...++..|.+.|..|+|.+.++|+++|.|+....+||++.|+ |
T Consensus 29 ~LL~e~Gf--I~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~g 106 (457)
T KOG2324|consen 29 ELLQEVGF--IRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKG 106 (457)
T ss_pred HHHHHhCc--cccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCC
Confidence 44455664 55677999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred ceEEEecCChHHHHHHHHhhhc-ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 518 ETYALKPMNCPGHCLIFDHRVR-SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 518 ~~l~LRPt~e~~~~~~~~~~~~-s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
+.|+|.||+|..++.+.++.+. ||++||+++||+|+.||+|.+++ .||+|-|||.|.|+++|.++ |.|.+.+..+.+
T Consensus 107 kq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpR-fGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~ 185 (457)
T KOG2324|consen 107 KQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPR-FGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQ 185 (457)
T ss_pred CEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCcc-ccchhhHHHHHhhhhcccCCHHHHHHHHHHHHH
Confidence 9999999999999999888765 99999999999999999999999 89999999999999999997 578899999999
Q ss_pred HHHHHHHHcCcEEEEEEccC
Q psy10609 596 FLRNVYSIFGFTFNLRLSTR 615 (715)
Q Consensus 596 ~~~~il~~LGl~~~v~l~~~ 615 (715)
.|.++|+.||+||.-+-...
T Consensus 186 aY~~iFkqL~~pfVkv~Ads 205 (457)
T KOG2324|consen 186 AYDRIFKQLGLPFVKVWADS 205 (457)
T ss_pred HHHHHHHHcCCCeEEEeecc
Confidence 99999999999976554443
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=237.67 Aligned_cols=182 Identities=23% Similarity=0.284 Sum_probs=165.0
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------H
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------M 282 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------L 282 (715)
..||+|++|||+.+++++ |+|+.|||+++++.+..++|||+|||++++ |++.+..++.++|++..+.+| +
T Consensus 3 ~~mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~d--L~~~i~~d~~i~fv~~~~~~g~~iy~hS~ 79 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYD--LRRNLEEDAEVEIITIDSNEGVEIARHSA 79 (639)
T ss_pred CCCeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEE--cCcccCCCCeEEEecCCChHHHHHHHHHH
Confidence 357999999999999998 999999999999999999999999999985 689999999999999999877 5
Q ss_pred HHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCc
Q psy10609 283 EGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGP 344 (715)
Q Consensus 283 e~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p 344 (715)
.++|..|+++.+|... ..+|.+++.+|++ +|.++|+++.|+.+..
T Consensus 80 ~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~it~edl~~Ie~---~m~eiI~~~~pI~~~~-------------- 142 (639)
T PRK12444 80 AHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEK---EMKKIINENIKIERVE-------------- 142 (639)
T ss_pred HHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE--------------
Confidence 8899999999998642 1478999999999 8999999999998874
Q ss_pred cccCcChhhHHhhccc--CcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 345 HVRHTGKIKAFKVTKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 345 ~~~~t~~~eA~eLf~~--~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|.. +.+|++|++..+..+.|++|+||+|+|||+||||||| |.++.|+|++|++++|..
T Consensus 143 ----v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sT---g~ik~f~l~~~~~g~~~g 211 (639)
T PRK12444 143 ----VSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDLCRGPHLPST---GYLKAFQLTHVSGAYWRG 211 (639)
T ss_pred ----ecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCC---CCCceeEEEEEcceEEcC
Confidence 799999999997 3899999998764467999999999999999999999 789999999999999984
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=224.15 Aligned_cols=156 Identities=23% Similarity=0.337 Sum_probs=138.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.++|++||+|.++.+++.|++.+++.+.++||++|.||.|++.++|.++.. +...++||.|.|. |+.++|||+.++++
T Consensus 72 ~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g-~~~~~~~y~f~D~~g~~l~LRpD~T~~i 150 (487)
T PLN02530 72 PPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAG-EEITDQLYNFEDKGGRRVALRPELTPSL 150 (487)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccC-cccccceEEEECCCCCEEecCCCCcHHH
Confidence 368999999999999999999999999999999999999999999976432 3467889999886 78999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE--
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-- 607 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-- 607 (715)
++++.....+. ++|+|+|++|+|||+|+++. | |.|||+|+++++||.+. .+++| ++.++.++|+.||++
T Consensus 151 aR~~~~~~~~~-~~P~r~~y~g~vfR~e~~q~--g--r~REf~Q~giEiiG~~~~~aDaE---vi~l~~~~l~~lgl~~~ 222 (487)
T PLN02530 151 ARLVLQKGKSL-SLPLKWFAIGQCWRYERMTR--G--RRREHYQWNMDIIGVPGVEAEAE---LLAAIVTFFKRVGITSS 222 (487)
T ss_pred HHHHHhccccc-CCCeEEEEEcCEEcCcCCCC--C--CccceEEcCeeEeCCCCcchhHH---HHHHHHHHHHHcCCCCC
Confidence 99988655443 69999999999999999985 8 99999999999999875 68888 678899999999994
Q ss_pred -EEEEEccCC
Q psy10609 608 -FNLRLSTRP 616 (715)
Q Consensus 608 -~~v~l~~~~ 616 (715)
|++.++++.
T Consensus 223 ~~~i~i~~~~ 232 (487)
T PLN02530 223 DVGIKVSSRK 232 (487)
T ss_pred ceEEEEcCHH
Confidence 999999874
|
|
| >KOG4163|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=213.41 Aligned_cols=243 Identities=19% Similarity=0.325 Sum_probs=200.7
Q ss_pred cccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCccc
Q psy10609 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 492 (715)
Q Consensus 413 G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~ 492 (715)
|..-+..+++-+|....- .+.+++++.++ +|.+.+.|-++.+|++|..|+...+++.|.++..+|.++
T Consensus 59 gl~~~k~~df~~WY~qVi-----------tk~emieYydv-sGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfV 126 (551)
T KOG4163|consen 59 GLTAKKEEDFPEWYSQVI-----------TKGEMIEYYDV-SGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFV 126 (551)
T ss_pred ccccccccchHHHHHHHh-----------hhhhhheeecc-cceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeec
Confidence 777778888999986543 45677777764 799999999999999999999999999999999999999
Q ss_pred chhhhhh-hCcccccCCCceEEeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCc
Q psy10609 493 NVKLWQT-SGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566 (715)
Q Consensus 493 ~~el~~~-sG~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL 566 (715)
+.+++++ ..|.+.|.+++-.+... .+.+++|||++...+.+|+.|++|||+||+|+.||.+|-|+|-.+. ..+
T Consensus 127 s~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p-~PF 205 (551)
T KOG4163|consen 127 SKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHP-QPF 205 (551)
T ss_pred CHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCC-Ccc
Confidence 9998864 67999999999887653 3578999999999999999999999999999999999999998854 689
Q ss_pred ceeeeEeEeeEEE-EeCchhHHHHHHHHHHHHHHHHHHc-CcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy10609 567 TRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644 (715)
Q Consensus 567 ~R~REFtq~d~~i-f~~~eqa~~E~~~~l~~~~~il~~L-Gl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~ 644 (715)
+|.|||.+.|.|. |.++++|++|+..+|+++.+++.+| .+|+.-.-.+..++|.|.+
T Consensus 206 lRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd--------------------- 264 (551)
T KOG4163|consen 206 LRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGD--------------------- 264 (551)
T ss_pred hhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCc---------------------
Confidence 9999999999999 5567899999999999999999875 4552211111123333222
Q ss_pred cccCCCCccccceeeEEeecCCCCccccccce-eccCcccccCcEEEcC-CCceecc
Q psy10609 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKN-VRAQTHE 699 (715)
Q Consensus 645 ~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~-dg~~~~~ 699 (715)
|--.+|-.+ -..||..|.+|.| |..|+++-|+|.|-|. +|+++++
T Consensus 265 ---------~TttvEa~i-~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv 311 (551)
T KOG4163|consen 265 ---------YTTTVEAFI-PCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFV 311 (551)
T ss_pred ---------ceEEEeeee-ccccccccccchhhhhHHHHHhhceeecCCCccchhhe
Confidence 223344433 3458999999999 9999999999999999 8888777
|
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=213.38 Aligned_cols=171 Identities=18% Similarity=0.327 Sum_probs=141.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cccc-ccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWA-HYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~-~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.++.+++.+++.+++.+.++||++|.||.|++.++|..+ |++. .+.++||++.|. |+.++|||+.|+
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~ 85 (412)
T PRK00037 6 APRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTA 85 (412)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcH
Confidence 4689999999999999999999999999999999999999999999765 6553 357899999876 899999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+++++++... .+|+|+|++|+|||+|.++. | |.|||+|.|+++||.++ .+++| ++.++.++++.||++
T Consensus 86 ~~ar~~~~~~----~~p~r~~~~g~vfR~e~~~~--g--r~ref~Q~g~ei~g~~~~~~d~E---~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 86 PVVRAVIEHK----LQPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIGSDSPLADAE---VIALAADILKALGLK 154 (412)
T ss_pred HHHHHHHhCC----CCCeEEEEEcCccccCCCCC--C--cccceEEcCeeeeCCCCcchhHH---HHHHHHHHHHHcCCC
Confidence 9998877542 29999999999999998884 7 99999999999999985 67888 578899999999997
Q ss_pred -EEEEEccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10609 608 -FNLRLSTRPEKYLGELEVWNKAEKQLEASLN 638 (715)
Q Consensus 608 -~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~ 638 (715)
+.+.+++. ++...+....+.|+.+|+
T Consensus 155 ~~~~~l~~~-----~~~~~~~~~~~~l~~~l~ 181 (412)
T PRK00037 155 GLKLLINSL-----GDFEIRANYRKALVGFLE 181 (412)
T ss_pred ceeeeeccC-----CCHHHhHHHHHHHHHHHH
Confidence 77776543 333344333334444443
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-21 Score=224.48 Aligned_cols=180 Identities=29% Similarity=0.390 Sum_probs=162.8
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------HHH
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------MEG 284 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------Le~ 284 (715)
+|+|++|||+.++++. |+|+.|+|+.++......+|+|+|||++++ |++.+.+++.|+|++..+.+| +.+
T Consensus 1 ~~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~d--L~~~l~~d~~Vefi~~~~~~g~~~y~hS~~h 77 (638)
T PRK00413 1 MIKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVD--LSTPIEEDASLEIITAKDEEGLEIIRHSAAH 77 (638)
T ss_pred CcEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEee--CCccccCCCceeeeeccchhhHHHHhhhHHH
Confidence 5899999999999998 999999999999999999999999999985 689999999999999998877 578
Q ss_pred HHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 285 LMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 285 lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
+|..|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 78 ll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~---~m~~iI~~~~pi~~~~---------------- 138 (638)
T PRK00413 78 LLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIEK---EMKEIIKENYPIEREV---------------- 138 (638)
T ss_pred HHHHHHHHHcCCceEEECCccCCeEEEEEeCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE----------------
Confidence 99999999998532 1478999999999 8999999999998874
Q ss_pred cCcChhhHHhhccc--CcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 347 RHTGKIKAFKVTKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 347 ~~t~~~eA~eLf~~--~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|.. +.+|++|++.++..+.|++|+||+|+|||+||||||| |.++.|+|..|+|++|-.
T Consensus 139 --v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~T---g~i~~f~i~~~~~g~~l~ 207 (638)
T PRK00413 139 --VSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDLCRGPHVPST---GKIKAFKLLKVAGAYWRG 207 (638)
T ss_pred --ecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCEEEECCCCCCCcc---cCCceeEEEEEcceEEcC
Confidence 799999999987 4899999998765458999999999999999999999 789999999999998874
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=210.08 Aligned_cols=156 Identities=14% Similarity=0.235 Sum_probs=138.2
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|++||+|..+.+++.+++.+++.|+++||++|.||.|++.++|... |..+...++||+|.|. |+.++|||+.+++
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 85 (423)
T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIP 85 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHH
Confidence 4689999999999999999999999999999999999999999999653 5555666889999886 7899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcEE
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTF 608 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~~ 608 (715)
++++++... ...+|+|+|++|+|||+|.++. | |.|||+|+++++||.+. .+++| ++.++.++++.||+.+
T Consensus 86 iaR~va~~~--~~~~p~r~~y~g~vfR~~~~~~--g--r~rE~~Q~g~EiiG~~~~~adaE---vi~la~~~l~~lg~~~ 156 (423)
T PRK12420 86 FAKVVAMNP--NIRLPFKRYEIGKVFRDGPIKQ--G--RFREFIQCDVDIVGVESVMAEAE---LMSMAFELFRRLNLEV 156 (423)
T ss_pred HHHHHHhCc--CCCCCeeEEEEcceECCCCCCC--C--ccceeEECCeeeECCCCCcccHH---HHHHHHHHHHHCCCCE
Confidence 998887542 2468999999999999999874 8 99999999999999874 77887 6889999999999999
Q ss_pred EEEEccCC
Q psy10609 609 NLRLSTRP 616 (715)
Q Consensus 609 ~v~l~~~~ 616 (715)
.+.++++.
T Consensus 157 ~i~l~~~~ 164 (423)
T PRK12420 157 TIQYNNRK 164 (423)
T ss_pred EEEEcCHH
Confidence 99999863
|
|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=204.88 Aligned_cols=156 Identities=18% Similarity=0.294 Sum_probs=137.4
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhC--cccccCCCceEEeec-CceEEEecCChHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG--HWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG--~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
++|+++|+|.++.+++.|++.+++.+.++||++|.||.|++.++|..++ +.+.+.++||++.|. |+.++|||+.|++
T Consensus 3 p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~ 82 (397)
T TIGR00442 3 PRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAP 82 (397)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHH
Confidence 5799999999999999999999999999999999999999999997653 334466899999874 8899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++.... ++.++|+|+|++|+|||+|.++. | |.|||+|.|+++||.++ .+++| ++.++.++++.||++
T Consensus 83 iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~--g--r~ref~Q~g~eiig~~~~~~d~E---~i~l~~e~l~~lg~~~ 154 (397)
T TIGR00442 83 VARAVIENK-LLLPKPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIGSDSPLADAE---IIALAAEILKELGIKD 154 (397)
T ss_pred HHHHHHhcc-cccCCCeEEEEEcCeecCCCCCC--C--cccceEEcCeeeeCCCCHHHHHH---HHHHHHHHHHHcCCCc
Confidence 999887553 35679999999999999998874 7 99999999999999885 45555 789999999999997
Q ss_pred EEEEEccCC
Q psy10609 608 FNLRLSTRP 616 (715)
Q Consensus 608 ~~v~l~~~~ 616 (715)
+++.++++.
T Consensus 155 ~~i~i~~~~ 163 (397)
T TIGR00442 155 FTLEINSLG 163 (397)
T ss_pred eEEEecCcc
Confidence 999999874
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=194.71 Aligned_cols=192 Identities=19% Similarity=0.313 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
+.+++.|++.+++.++++||++|.||.|++.++|..++ ++...++||++.|. |+.++|||+.|++++++++....+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 57889999999999999999999999999999998776 56678899999875 789999999999999998876655 5
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC--C-
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP--E- 617 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~--e- 617 (715)
++|+|++++|+|||+|.++. | |.|||+|.++++||.++ .+++| ++.++.++++.||++ +.+.++++. +
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~--g--~~re~~Q~g~Eiig~~~~~~daE---~i~l~~~~l~~lg~~~~~i~l~~~~i~~~ 152 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQK--G--RYREFYQVGVEIIGSDSPLADAE---VIALAVEILEALGLKDFQIKINHRGILDG 152 (261)
T ss_pred CCCeEEEEEcCEEecCCCCC--C--CccceEEeceeeeCCCChHHHHH---HHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 79999999999999999874 7 99999999999999965 55555 789999999999997 999999875 2
Q ss_pred --CCCCCHHHHH---------HHHH---HHHHHHHhcCC--CccccCCC---Cccc-cceeeEEeec
Q psy10609 618 --KYLGELEVWN---------KAEK---QLEASLNSFGE--PWTENPGD---GAFY-GPKIDITITD 664 (715)
Q Consensus 618 --k~~gd~e~w~---------~a~~---~L~~~L~~~g~--~~~~~~g~---~afY-gpkid~~~~D 664 (715)
+..+..+.+. .+.+ .+.+.|+..|+ .+..+++. -.|| |.-+++....
T Consensus 153 l~~~~~~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~ 219 (261)
T cd00773 153 IAGLLEDREEYIERLIDKLDKEALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADG 219 (261)
T ss_pred HhhccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEECC
Confidence 1222222221 2222 23445666674 34455554 2577 8888876544
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-20 Score=202.48 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=136.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~ 529 (715)
.++|++|++|..+..++.+++.+++.|+++||++|.||.|++.+++...+. +...++||+|.|. |+.++|||..+++
T Consensus 5 ~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g-~~~~~~~~~f~d~~~g~~l~LRpD~T~~ 83 (391)
T PRK12292 5 LPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG-AILDLRTFKLVDQLSGRTLGLRPDMTAQ 83 (391)
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC-ccchhhhEEEeecCCCCEEEECCCCcHH
Confidence 468999999999999999999999999999999999999999999965432 2346789999876 7899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
++++++.... ....|+|+|++|+|||+|.++. | |.|||+|+++++||.++ .+|+| ++.++.++++.||++
T Consensus 84 iaR~~a~~~~-~~~~p~r~~y~g~vfR~~~~~~--g--r~ref~Q~g~EiiG~~~~~aDaE---vi~l~~~~l~~lgl~~ 155 (391)
T PRK12292 84 IARIAATRLA-NRPGPLRLCYAGNVFRAQERGL--G--RSREFLQSGVELIGDAGLEADAE---VILLLLEALKALGLPN 155 (391)
T ss_pred HHHHHHHhcc-CCCCCeEEEeeceeeecCCCcC--C--CccchhccceEEeCCCCchHHHH---HHHHHHHHHHHcCCCC
Confidence 9998875542 3468999999999999999884 8 99999999999999875 67777 689999999999996
Q ss_pred EEEEEccCC
Q psy10609 608 FNLRLSTRP 616 (715)
Q Consensus 608 ~~v~l~~~~ 616 (715)
+.+.++++.
T Consensus 156 ~~i~i~~~~ 164 (391)
T PRK12292 156 FTLDLGHVG 164 (391)
T ss_pred eEEEeccHH
Confidence 999999874
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=195.83 Aligned_cols=150 Identities=23% Similarity=0.365 Sum_probs=132.7
Q ss_pred EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHH
Q psy10609 457 CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFD 535 (715)
Q Consensus 457 ~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~ 535 (715)
+|++|.++.+++.+++.+++.++++||.+|.||.|++.+++...++ ...++||++.|. |+.++|||..|+++++++.
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 4789999999999999999999999999999999999999987766 367899999875 8899999988888888887
Q ss_pred hhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEc
Q psy10609 536 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 536 ~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~ 613 (715)
.... ..++|+|++++|+|||+|.++. | |.|||+|.++|+||.++ .+++| ++.++.++++.||+. +.+.++
T Consensus 79 ~~~~-~~~~p~r~~y~g~VfR~~~~~~--g--r~re~~Q~g~Eiig~~~~~adaE---vi~l~~~~l~~lg~~~~~i~l~ 150 (314)
T TIGR00443 79 TRLR-DRPLPLRLCYAGNVFRTNESGA--G--RSREFTQAGVELIGAGGPAADAE---VIALLIEALKALGLKDFKIELG 150 (314)
T ss_pred Hhcc-cCCCCeEEEEeceEeecCCCcC--C--CcccccccceEEeCCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeC
Confidence 6554 4568999999999999999884 7 99999999999999875 55655 789999999999996 999998
Q ss_pred cCC
Q psy10609 614 TRP 616 (715)
Q Consensus 614 ~~~ 616 (715)
++.
T Consensus 151 ~~~ 153 (314)
T TIGR00443 151 HVG 153 (314)
T ss_pred cHH
Confidence 874
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=198.47 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=135.1
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec--CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE--NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~--~~~l~LRPt~e~ 528 (715)
.++|++|++|..+..++.|++.+++.+.++||++|.||.|++.+++... |. .....||+|.|. |+.++|||..++
T Consensus 9 ~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~--~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 9 LPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ--DLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc--cchhceEEEEcCCCCcEEEECCcCCH
Confidence 4789999999999999999999999999999999999999999999653 43 234579999884 788999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++.+... ...|+|+||+|+|||++.++. | |.|||+|.++++||.+. .+|+| ++.++.++++.||++
T Consensus 87 ~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~~~~~--g--r~rEf~Q~GvEiiG~~~~~aDaE---vi~l~~e~l~~lgi~ 157 (392)
T PRK12421 87 QVARIDAHLLN--REGVARLCYAGSVLHTLPQGL--F--GSRTPLQLGAELYGHAGIEADLE---IIRLMLGLLRNAGVP 157 (392)
T ss_pred HHHHHHHhhcC--CCCceEEEEeeeEEEcCCCcC--C--CcCccceeceEEeCCCCchhHHH---HHHHHHHHHHHcCCC
Confidence 99998765432 267999999999999998874 8 99999999999999875 78888 688999999999996
Q ss_pred -EEEEEccCC
Q psy10609 608 -FNLRLSTRP 616 (715)
Q Consensus 608 -~~v~l~~~~ 616 (715)
+.+.+++++
T Consensus 158 ~~~l~ig~~~ 167 (392)
T PRK12421 158 ALHLDLGHVG 167 (392)
T ss_pred CeEEEeCCHH
Confidence 999999874
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=206.13 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=133.4
Q ss_pred cCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChH
Q psy10609 451 ELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 451 ~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
+.++|++||+|..+.+++.|++.+++.|+++||.+|.||.|++.+++... |. . .++||.|.|. |+.++|||..++
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ge--d-~k~mY~f~D~gGr~LaLRPDlTv 404 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGE--D-SKLIYDLADQGGELCSLRYDLTV 404 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCc--c-hhheEEEECCCCCEEEeCCCChH
Confidence 45799999999999999999999999999999999999999999998653 32 1 3579999886 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-h-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-E-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
++++++.... ..|+|+|++|+|||+|+++. | |.|||+|+++++|+.. . .+|+| ++.++.++++.||+
T Consensus 405 PiAR~vA~n~----~~p~KrYyiG~VFR~e~pqk--G--R~REF~Q~G~EIIG~~~~~~aDAE---VI~La~E~L~~LGi 473 (763)
T PLN02972 405 PFARYVAMNG----ITSFKRYQIAKVYRRDNPSK--G--RYREFYQCDFDIAGVYEPMGPDFE---IIKVLTELLDELDI 473 (763)
T ss_pred HHHHHHHhCC----CCcceEEEeccEEecCCCCC--C--CCccceEEeEEEEcCCCcchhhHH---HHHHHHHHHHhCCC
Confidence 9998887532 24999999999999999984 9 9999999999999974 3 56888 68999999999999
Q ss_pred E-EEEEEccCC
Q psy10609 607 T-FNLRLSTRP 616 (715)
Q Consensus 607 ~-~~v~l~~~~ 616 (715)
+ |++.+++++
T Consensus 474 ~df~I~INh~~ 484 (763)
T PLN02972 474 GTYEVKLNHRK 484 (763)
T ss_pred CceEEEeCCHH
Confidence 6 999999985
|
|
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-19 Score=201.45 Aligned_cols=225 Identities=18% Similarity=0.234 Sum_probs=162.3
Q ss_pred HHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 439 KIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
.|.++.+.+...- + .+|++||.|.|+.++++|++.|++.|. ..|+.+|.+|+|.+.++|++|||+++|.|-|-..
T Consensus 8 ~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~~ 87 (551)
T TIGR00389 8 SLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVDC 87 (551)
T ss_pred HHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceeec
Confidence 4555555544332 1 389999999999999999999999994 7789999999999999999999999998876542
Q ss_pred ee---------------------------------------------------------------cCceEEEecCChHHH
Q psy10609 514 DV---------------------------------------------------------------ENETYALKPMNCPGH 530 (715)
Q Consensus 514 ~d---------------------------------------------------------------~~~~l~LRPt~e~~~ 530 (715)
.. ++...+|||+++.++
T Consensus 88 ~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGi 167 (551)
T TIGR00389 88 KSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGI 167 (551)
T ss_pred CCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhh
Confidence 10 012567999999999
Q ss_pred HHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcEE
Q psy10609 531 CLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTF 608 (715)
Q Consensus 531 ~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~~ 608 (715)
+..|++.....+ .||+.++|+|++||||.+++ .||+|+|||+|.|++.||.|+ .....+..+.+....++.+=. .
T Consensus 168 FvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr-~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~--~ 244 (551)
T TIGR00389 168 FINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQM--Q 244 (551)
T ss_pred HHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc-cceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchh--h
Confidence 999998776555 79999999999999999998 899999999999999999995 443444433333322221100 0
Q ss_pred EEEEccCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCcc------ccCCCCccccc-eeeEEeecCCC
Q psy10609 609 NLRLSTRP-EKYLGELEVWNKAEKQLEASLNSFGEPWT------ENPGDGAFYGP-KIDITITDALK 667 (715)
Q Consensus 609 ~v~l~~~~-ek~~gd~e~w~~a~~~L~~~L~~~g~~~~------~~~g~~afYgp-kid~~~~D~~g 667 (715)
...++... .+.+ +.+....+.+....+|.++|++-. ..+.+-|+|.- .+|+.+.-+.|
T Consensus 245 ~~~~~eav~~g~i-~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~G 310 (551)
T TIGR00389 245 ESGIGEAVESGMI-ENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYG 310 (551)
T ss_pred hccHHHHHHhccc-chHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCC
Confidence 00011111 1223 233456667778888999998744 24566799944 47777666554
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-19 Score=194.33 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=134.4
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHH--HcCcEEEecCcccchhhhhhhCcccccCCCce--------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYR--KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF-------------------- 511 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~--~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy-------------------- 511 (715)
+|++||.|.|+.|+++|++.|++.+. +-+..+|.+|+|.+..+|+.|||.+.|.|-|-
T Consensus 30 ~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~ 109 (539)
T PRK14894 30 QGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPN 109 (539)
T ss_pred ccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCC
Confidence 89999999999999999999999884 56778999999999999999999999966533
Q ss_pred ----------------EEeec-----CceEEEecCChHHHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCccee
Q psy10609 512 ----------------SFDVE-----NETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRV 569 (715)
Q Consensus 512 ----------------~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~ 569 (715)
+...+ +...+|||+++.+++..|++.+...+ .||+-++|+|++||||.+++ .||+|+
T Consensus 110 CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr-~~l~R~ 188 (539)
T PRK14894 110 CGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPR-NFLFRV 188 (539)
T ss_pred CCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCC-Cceeec
Confidence 22211 13578999999999999998776554 79999999999999999998 899999
Q ss_pred eeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 570 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 570 REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
|||+|.|++.|+.|+.+.+.+...++....++.++||+
T Consensus 189 REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~ 226 (539)
T PRK14894 189 REFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIP 226 (539)
T ss_pred ccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999877788888888888999999996
|
|
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-19 Score=192.63 Aligned_cols=147 Identities=24% Similarity=0.446 Sum_probs=123.7
Q ss_pred HHHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHHH--cCcEEEecCcccchhhhhhhCcccccCCCce
Q psy10609 438 RKIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYRK--RGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 511 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~~--~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy 511 (715)
..|+++-+.+...- + .+|+|||.|.|+.|+++|++.|++.|.. -|+.+|.||+|.+.++|++|||+++|.|-|-
T Consensus 10 ~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv 89 (558)
T COG0423 10 VELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLV 89 (558)
T ss_pred HHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCccccccccee
Confidence 34566666554332 2 3899999999999999999999999853 6899999999999999999999999987643
Q ss_pred EE------------------------------------------------------------ee---cCceEEEecCChH
Q psy10609 512 SF------------------------------------------------------------DV---ENETYALKPMNCP 528 (715)
Q Consensus 512 ~~------------------------------------------------------------~d---~~~~l~LRPt~e~ 528 (715)
.. .. ++...+|||++.+
T Consensus 90 ~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQ 169 (558)
T COG0423 90 ECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQ 169 (558)
T ss_pred eccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccc
Confidence 21 11 1346789999999
Q ss_pred HHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh
Q psy10609 529 GHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ 585 (715)
Q Consensus 529 ~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq 585 (715)
+++..|++.....+ .||+.++|+|+.||||.+++ .||+|+|||+|.|++.|+.|+.
T Consensus 170 GiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr-~gl~R~REF~QaEiE~Fv~P~~ 226 (558)
T COG0423 170 GIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPR-NGLFRTREFEQAEIEFFVDPEE 226 (558)
T ss_pred hhhhhhHHHHHHhccCCCeEEEeechhhccccCcc-cceeehhhhhhhheeeEECCCc
Confidence 99999998776555 69999999999999999998 8999999999999999999863
|
|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-18 Score=181.33 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=126.0
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.++|++|++|..+.+++.+++.+.+.+.++||++|.||.|++.+++.. ...++||+|.|. |+.++|||..++++
T Consensus 7 ~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~i 81 (281)
T PRK12293 7 IPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLDV 81 (281)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHHH
Confidence 478999999999999999999999999999999999999999988732 235789999885 78999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEE
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 610 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v 610 (715)
++++.+.... ..+|+|+||+|+|||+|. |||+|.+++++|.++. + +++.++.++++++|+++.+
T Consensus 82 aR~~a~~~~~-~~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~--~---Evi~la~~~l~~lgl~~~i 145 (281)
T PRK12293 82 VRIVTKRLGR-STEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL--S---EILNIAAEIFEELELEPIL 145 (281)
T ss_pred HHHHHHhccc-CCCceeEEEeccEEecCC----------CcccccCeEeeCCCCH--H---HHHHHHHHHHHHcCCCCEE
Confidence 9988765432 368999999999999973 8999999999999763 2 5789999999999999888
Q ss_pred EEccCC
Q psy10609 611 RLSTRP 616 (715)
Q Consensus 611 ~l~~~~ 616 (715)
.+++++
T Consensus 146 ~ig~~~ 151 (281)
T PRK12293 146 QISNIK 151 (281)
T ss_pred EECCHH
Confidence 999875
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=164.49 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
++.+++.+++.+...||++|.||.|++.+.+...|..+ +.+..+.+ .++..+|||+.++++..+++... +++|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 67889999999999999999999999998887766542 23333333 36788999999999998887665 6899
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCc--EEEEEEccCCCCCCCCH
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF--TFNLRLSTRPEKYLGEL 623 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl--~~~v~l~~~~ek~~gd~ 623 (715)
+|++++|+|||.|.++. ++.|++||+|.++++++.+.+....+.+++.++.++++.+|+ ++++..... .
T Consensus 76 ~~lfeig~vfr~e~~~~--~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~-------~ 146 (211)
T cd00768 76 LRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTP-------G 146 (211)
T ss_pred EEEEEEcceeecCCCcc--ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCc-------h
Confidence 99999999999998753 356899999999999998754334567789999999999997 344432211 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcccccccee-ccCcccccCcEEEcCCCceecc
Q psy10609 624 EVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQL-DFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 624 e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQl-Df~~~~rf~l~Y~~~dg~~~~~ 699 (715)
..|. ++.|++.|+.+.|+.+|..++|+++. .-+..++|+++|.+++++..+|
T Consensus 147 ~~~~------------------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p 199 (211)
T cd00768 147 EFSP------------------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYP 199 (211)
T ss_pred hhcc------------------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCc
Confidence 0010 35689999999999999889999984 4455677999999999998887
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=177.68 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=124.4
Q ss_pred eeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHH
Q psy10609 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLI 533 (715)
Q Consensus 455 G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~ 533 (715)
|++||+|..+..++.+++.+.+.|+++||++|.||.|++.+++...+... .+++|++.|+ |+.++|||..+++++++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999987654322 3489999876 88999999999999998
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHH-HcCcE-EEE
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYS-IFGFT-FNL 610 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~-~LGl~-~~v 610 (715)
++.... ...|.|+|++|+|||++.++. | |.|||+|+++++|+.+. .+++| ++.++.++++ .+|+. +.+
T Consensus 79 ~a~~~~--~~~~~r~~y~g~vfR~~~~~~--g--~~re~~Q~g~Eiig~~~~~~daE---vi~l~~e~l~~~l~~~~~~i 149 (311)
T PF13393_consen 79 VARNLN--LPRPKRYYYIGPVFRYERPGK--G--RPREFYQCGFEIIGSSSLEADAE---VIKLADEILDRELGLENFTI 149 (311)
T ss_dssp HHHCCG--SSSSEEEEEEEEEEEEETTTT--T--BESEEEEEEEEEESSSSHHHHHH---HHHHHHHHHHHHHTTTSEEE
T ss_pred HHHhcC--cCCCceEEEEcceeeccccCC--C--CCceeEEEEEEEECCCCHHHHHH---HHHHHHHHHHhhcCCCCcEE
Confidence 876532 578999999999999998874 7 99999999999999884 66777 6889999997 99995 999
Q ss_pred EEccCC
Q psy10609 611 RLSTRP 616 (715)
Q Consensus 611 ~l~~~~ 616 (715)
.+++..
T Consensus 150 ~i~h~~ 155 (311)
T PF13393_consen 150 RINHTG 155 (311)
T ss_dssp EEEEHH
T ss_pred EEcCch
Confidence 999874
|
... |
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-18 Score=195.49 Aligned_cols=213 Identities=21% Similarity=0.226 Sum_probs=156.5
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEEe------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD------------------ 514 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~------------------ 514 (715)
+|+|||.|.|+.|+++|++.|++.|. ..++-+|.+|+|.+..+|++|||.++|.|-|-+..
T Consensus 99 aG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~~~~~~~RADhlie~~~~~ 178 (684)
T PLN02734 99 AGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFCEE 178 (684)
T ss_pred ccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcCCCCcEecchHHHHHHHHh
Confidence 89999999999999999999999985 55777999999999999999999999977644210
Q ss_pred -----------------------e------------------------------------------cCceEEEecCChHH
Q psy10609 515 -----------------------V------------------------------------------ENETYALKPMNCPG 529 (715)
Q Consensus 515 -----------------------d------------------------------------------~~~~l~LRPt~e~~ 529 (715)
+ ++..-+|||+|..+
T Consensus 179 ~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRPETAQG 258 (684)
T PLN02734 179 KLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRPETAQG 258 (684)
T ss_pred hhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecccccch
Confidence 0 01246799999999
Q ss_pred HHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh-HHHHHHHHHHHHHHHHHH----
Q psy10609 530 HCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ-IGDEIVGALDFLRNVYSI---- 603 (715)
Q Consensus 530 ~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq-a~~E~~~~l~~~~~il~~---- 603 (715)
++..|++.....+ .||+-.+|+|+.||||.+++ .||+|+|||+|.|++.|+.|+. ...-+.++-+....+|.+
T Consensus 259 iFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR-~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~ 337 (684)
T PLN02734 259 IFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR-QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREEQL 337 (684)
T ss_pred heeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc-cceeeechhhhhhhheecCcccccccchhhhhhhhhhcccHhhhh
Confidence 9999998776555 79999999999999999998 8999999999999999999963 222222222332223211
Q ss_pred cCc-EEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcc------ccCCCCccccc-eeeEEeecCCC
Q psy10609 604 FGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWT------ENPGDGAFYGP-KIDITITDALK 667 (715)
Q Consensus 604 LGl-~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~------~~~g~~afYgp-kid~~~~D~~g 667 (715)
-|- +..+.++...++-+-+.+....+.+....+|.++|++-. ..+.+-|+|.- -+|+.+..+.|
T Consensus 338 ~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~G 409 (684)
T PLN02734 338 GGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYG 409 (684)
T ss_pred ccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCC
Confidence 111 123333222233333455567777888899999999744 24566789944 47777766654
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=166.16 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
.+.+.+.+++.|.++||.+|.||.|++.+++.. +|. ...++||+|.|. |+.++|||..++++++++... ....
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~ 81 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENGEELCLRPDFTIPVCRRHIAT---AGGE 81 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHc---CCCC
Confidence 357899999999999999999999999998854 442 345789999885 889999999998888876543 2367
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc--hhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV--EQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~--eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
|+|+||+|+|||+| +| |.|||+|+++++|+.+ ..+|+| ++.++.++++.+|++ +++.++++.
T Consensus 82 p~R~~Y~g~VfR~~-----~g--r~rEf~Q~GvEiiG~~~~~~aDaE---vi~l~~~~L~~lgl~~~~i~ig~~~ 146 (373)
T PRK12295 82 PARYAYLGEVFRQR-----RD--RASEFLQAGIESFGRADPAAADAE---VLALALEALAALGPGDLEVRLGDVG 146 (373)
T ss_pred CeEEEEEccEEECC-----CC--CCCcceEeeEEeeCCCCCccchHH---HHHHHHHHHHHcCCCceEEEeCCHH
Confidence 99999999999999 26 8999999999999974 367888 688999999999996 999998874
|
|
| >KOG1936|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=162.03 Aligned_cols=152 Identities=15% Similarity=0.252 Sum_probs=130.1
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|++||-|..+.+++.+.+.+.+.|+++|+..|.||+++-.+++.+ -|. + .+-+|.++|. |+...|||.-+++
T Consensus 62 tPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGE-d--skLiYdlkDQGGEl~SLRYDLTVP 138 (518)
T KOG1936|consen 62 TPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGE-D--SKLIYDLKDQGGELCSLRYDLTVP 138 (518)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccc-c--cceeEehhhcCCcEEEeecccccH
Confidence 479999999999999999999999999999999999999999998854 332 1 2568999886 7788999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch--hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e--qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++.+.. +---++.|+++++||++.+.-++| |+|||+|+|..|.|.-+ -.++| ++.+..++|+.|||.
T Consensus 139 fARylAmN----ki~sikRy~iAkVyRRd~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE---~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 139 FARYLAMN----KITSIKRYHIAKVYRRDQPAMTRG--RYREFYQCDFDIAGQFDPMIPDAE---CLKIVVEILSRLGIG 209 (518)
T ss_pred HHHHHHHc----ccccceeeeEEEEEeccCchhhch--hhhhhhccCccccccCCCCCchHH---HHHHHHHHHhhcCcc
Confidence 88876633 223478999999999999965579 99999999999999744 45666 788999999999996
Q ss_pred -EEEEEccC
Q psy10609 608 -FNLRLSTR 615 (715)
Q Consensus 608 -~~v~l~~~ 615 (715)
|.+.+|+|
T Consensus 210 d~~iKvNhR 218 (518)
T KOG1936|consen 210 DYGIKVNHR 218 (518)
T ss_pred ceEEEecHH
Confidence 99999998
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-15 Score=161.00 Aligned_cols=152 Identities=18% Similarity=0.277 Sum_probs=133.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.+.|++|.+|..+.....+.+.+.+.|.++||+.|.||+|++.+.+... |+ .....||++.|. |+.++|||.-+++
T Consensus 5 lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g~~l~LRpD~T~p 82 (390)
T COG3705 5 LPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETGGRLGLRPDFTIP 82 (390)
T ss_pred CCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCCCeEEecccccHH
Confidence 3689999999999999999999999999999999999999999988543 43 345789999886 7889999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++.+...+ .|.|++|.|++||.. .+. +| |..||+|.+++.++.+. +||+| ++.++..+++.+|++
T Consensus 83 VaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~~-~g--~~~Ef~QaGiEllG~~~~~ADaE---vi~la~~~L~~~gl~~ 152 (390)
T COG3705 83 VARIHATLLAG---TPLRLSYAGKVFRAR-EGR-HG--RRAEFLQAGIELLGDDSAAADAE---VIALALAALKALGLAD 152 (390)
T ss_pred HHHHHHHhcCC---CCceeeecchhhhcc-hhc-cC--cccchhhhhhHHhCCCcchhhHH---HHHHHHHHHHHcCCcC
Confidence 98888766543 899999999999999 444 57 88899999999999975 88998 688999999999997
Q ss_pred EEEEEccC
Q psy10609 608 FNLRLSTR 615 (715)
Q Consensus 608 ~~v~l~~~ 615 (715)
+++.+++-
T Consensus 153 ~~l~LG~~ 160 (390)
T COG3705 153 LKLELGHA 160 (390)
T ss_pred eEEEeccH
Confidence 99999885
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-13 Score=145.81 Aligned_cols=133 Identities=18% Similarity=0.286 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccc--ccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA--HYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~--~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
...|++.+++.+..+||+||.||.|.+.+.|+..|+.. .+.++||.+. +.++|||+.+|+++..++.. ..+.++
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id---eel~LRpsLtPsLlr~la~n-~k~~~~ 281 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPGLYNYLRKL-DRILPD 281 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC---CceEehhhhHHHHHHHHHhh-hhcccC
Confidence 56788888888888999999999999999998888753 3456788762 47899999999988876532 234578
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
|+|++++|+|||+|.++. + +++||+|.++.+++... .+.++..++.++|+.|||+|++.
T Consensus 282 P~RIFEIG~VFR~E~~g~--~--hlrEf~Ql~~~iiGs~~----~f~dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 282 PIKIFEIGPCYRKESDGK--E--HLEEFTMVNFCQMGSGC----TRENLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred CeeEEEEeceEecCCCCC--C--CcceEEEEEEEEeCCch----HHHHHHHHHHHHHHHCCCCcEEe
Confidence 999999999999998774 5 89999999999886532 23346688889999999887654
|
|
| >KOG2298|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-14 Score=155.50 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=150.1
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceE--------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-------------------- 512 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~-------------------- 512 (715)
+|.+||.|.|+.+..+|.+.|++.|. +-+.-+|..|.|.+..++++|||.++|.+=|-+
T Consensus 36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGecfRADHLvk~~~~r 115 (599)
T KOG2298|consen 36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGECFRADHLVKDAEER 115 (599)
T ss_pred ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHhcCccccceehhhHHHHHHHHh
Confidence 99999999999999999999999984 779999999999999999999999998765431
Q ss_pred ---------------------------------------------------------Eee---cCceEEEecCChHHHHH
Q psy10609 513 ---------------------------------------------------------FDV---ENETYALKPMNCPGHCL 532 (715)
Q Consensus 513 ---------------------------------------------------------~~d---~~~~l~LRPt~e~~~~~ 532 (715)
... ++-.-+|||++..+...
T Consensus 116 l~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~Fl 195 (599)
T KOG2298|consen 116 LKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQFL 195 (599)
T ss_pred hhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccccc
Confidence 100 12245799999999998
Q ss_pred HHHhhh-cccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHH-c---Cc
Q psy10609 533 IFDHRV-RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI-F---GF 606 (715)
Q Consensus 533 ~~~~~~-~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~-L---Gl 606 (715)
.|+... .+-+.||+--+++|+.||+|.+++ .||+|+|||+|.|++-|+.|. .+..-+..+...-..++.+ . |-
T Consensus 196 NFkrlle~N~~KlPFA~AqiG~~fRNEISpR-sGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q~~g~ 274 (599)
T KOG2298|consen 196 NFKRLLEFNQGKLPFASAQIGKSFRNEISPR-SGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQLSGQ 274 (599)
T ss_pred cHHHHHHhcCCCCcchHHHhchHhhhccCcc-cCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhhhccc
Confidence 888654 234579999999999999999998 899999999999999999984 4444333332222222211 0 11
Q ss_pred E-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccc------cCCCCccccce-eeEEeecCCC
Q psy10609 607 T-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTE------NPGDGAFYGPK-IDITITDALK 667 (715)
Q Consensus 607 ~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~------~~g~~afYgpk-id~~~~D~~g 667 (715)
. -++.++....+-+-+.++-....+.+..+|.+.|++-+. ...+=|+|.-. +|..+..+.|
T Consensus 275 ~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYG 343 (599)
T KOG2298|consen 275 SAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYG 343 (599)
T ss_pred hhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccC
Confidence 1 122222211232334556667778888889999987442 33445666332 4544444433
|
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=141.49 Aligned_cols=165 Identities=15% Similarity=0.188 Sum_probs=121.2
Q ss_pred hhhHHHHhhhcCcceeccC-C-CeeEE----eCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccc--c
Q psy10609 434 KRDHRKIGREQELFFFHEL-S-PGSCF----FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA--H 505 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~-~-~G~~~----~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~--~ 505 (715)
+.|...++.+.+.=.|++. + .+-.+ +......-+..|++.+++.|..+||++|.||+|++.+.++..++.+ .
T Consensus 203 ~~~~~~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~e 282 (453)
T TIGR02367 203 PEDEISLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTE 282 (453)
T ss_pred CchhhhhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCc
Confidence 3445555666553334432 1 12222 2333445678999999999999999999999999888887666542 3
Q ss_pred cCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-
Q psy10609 506 YSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE- 584 (715)
Q Consensus 506 ~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e- 584 (715)
..++||.+. +.++|||+.+|++..++....+ ...+|+|+|++|+|||+|.++. | |+|||+|.++.+++...
T Consensus 283 I~n~Iyk~e---e~lvLRPdLTPsLaR~La~N~~-~l~~PqKIFEIGkVFR~E~~~~--t--hlREF~QL~~eIaG~~at 354 (453)
T TIGR02367 283 LSKQIFRVD---KNFCLRPMLAPNLYNYLRKLDR-ALPDPIKIFEIGPCYRKESDGK--E--HLEEFTMLNFCQMGSGCT 354 (453)
T ss_pred ccccceEec---CceEecccCHHHHHHHHHHhhh-hccCCeeEEEEcCeEecCCCCC--C--CcCeEEEEEEEEECCCCC
Confidence 566888863 3689999999999887654321 2368999999999999998875 6 99999999999998764
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 585 QIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 585 qa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
.++ +..++.++++.||+.|++.
T Consensus 355 faD-----lealL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 355 REN-----LEAIIKDFLDHLEIDFEIV 376 (453)
T ss_pred HHH-----HHHHHHHHHHHCCCceEEe
Confidence 332 3358889999999988774
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=125.64 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceE-Eee-cCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-FDV-ENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~-~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
.-++.+++.+++.|+++||++|.||.|++.+++..+++ ...+.+++ +.+ +|+.++|||..+++++++++...
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~--~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~---- 81 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHE--DLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP---- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhcccc--chhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC----
Confidence 44678999999999999999999999999999743332 22234443 544 58999999999999988876432
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EE-EEEccC
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FN-LRLSTR 615 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~-v~l~~~ 615 (715)
.-|.|+||+|+|||++. +|+|.+++++|....++.| ++.++.+.++.+|.. +. +.+++.
T Consensus 82 ~~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~~e---~l~la~~~l~~~g~~~~~~i~lGh~ 142 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANVQQ---SFKLFIQFIQQQLRDNVHFVVLGHY 142 (272)
T ss_pred CCCceEEEeccEeccCC-----------CcceeceEEECCCchhHHH---HHHHHHHHHHHhCCCCCcEEEeccH
Confidence 34679999999999873 3799999999955455555 568888999999654 43 566664
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-11 Score=140.80 Aligned_cols=106 Identities=28% Similarity=0.387 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCce----------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 283 EGLMKDIVKEKQPFER----------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 283 e~lm~~aV~~l~P~~r----------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
.++|..||++++|.-. ..+|++|..+|++ .|+++++++.++.+..
T Consensus 34 ah~l~~av~~l~p~~~~gp~ie~gfyyd~~~~~~~~~~dl~~ie~---~m~~i~~~~~~~~~~~---------------- 94 (589)
T COG0441 34 AHVLAQAVKRLYPDVTIGPVIEEGFYYDFDVKEPITPEDLLKIEK---EMKEIAKENLPIEREV---------------- 94 (589)
T ss_pred HHHHHHHHHHhCCCccccCcccceeEEeeccCCCCCHHHHHHHHH---HHHHHHHhcCceEEEE----------------
Confidence 7799999999999632 2489999999999 8999999999888874
Q ss_pred cCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 347 RHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 347 ~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.+.|. ++|+.+++.++ ..+|+|++|+|.|+|+|||+||| |.+ .|+|++++|.+|.
T Consensus 95 --~~~e~a~~~f~--~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t---~~i-~fkl~~~~~ayw~ 155 (589)
T COG0441 95 --VSREEARAPFG--PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPST---GKI-AFKLLKLAGAYWR 155 (589)
T ss_pred --ecHHHHHHHhh--hhHHHHHhcCC--CCceeEecCccccccCCCCCCcc---ceE-EEEEEEecchhhc
Confidence 69999999999 99999999986 78999999999999999999999 889 9999999999997
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-11 Score=141.66 Aligned_cols=127 Identities=25% Similarity=0.309 Sum_probs=106.9
Q ss_pred ccccccCCCChHH-------HHHHHHHHHHhcCCCce-----------------eecCHHHHHHHHhcChhHHHHHhhcc
Q psy10609 269 QYFSLVSTLDFPV-------MEGLMKDIVKEKQPFER-----------------LEMKKEDLIEMFKYNPFKLRILKEKV 324 (715)
Q Consensus 269 ~~ve~It~~d~~g-------Le~lm~~aV~~l~P~~r-----------------~~vs~eda~~If~~~~~m~eLI~e~~ 324 (715)
..+++++.++.++ +.++|..|+++++|..+ .++|.+++.+|++ .|.++|+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~~~lt~edl~~IEk---~m~~iI~~n~ 106 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKK---EMDRIISRNL 106 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecCCCCCHHHHHHHHH---HHHHHHHcCC
Confidence 4566676666554 47899999999998542 2579999999999 8999999999
Q ss_pred CCCcEEEEeeCCcccccCCccccCcChhhHHhhccc--CcchhhccccccCCCceEEEeeCC-eeeeccCcCCCCCccCC
Q psy10609 325 NTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKY--NPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHNSSTYWEG 401 (715)
Q Consensus 325 pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~--~~~Kl~Ll~~~~~~~~vtlY~~g~-~~D~c~GP~vpsT~~~G 401 (715)
|+.+.. +++++|.++|.. +++|.+|++... .+.|++|+||+ |+|+|+||||||| |
T Consensus 107 pI~~~~------------------v~~eEA~~~f~~~~~~~k~~Ll~~~~-~~~Iriy~ig~~~~D~c~GpHv~sT---g 164 (614)
T PLN02837 107 PLVREE------------------VSREEAQKRIMAINEPYKLEILEGIK-EEPITIYHIGEEWWDLCAGPHVERT---G 164 (614)
T ss_pred CEEEEE------------------ecHHHHHHHHHHcCCchhHHHhccCC-CCeEEEEEECCeEEEecCCCCcccc---c
Confidence 998874 799999999985 388999988764 56899999997 8999999999999 7
Q ss_pred Cc--chhhhhhhhcccCCChh
Q psy10609 402 KA--DAESLQRVYGISFPDNK 420 (715)
Q Consensus 402 ~l--k~f~L~r~~G~~~~~~~ 420 (715)
.+ ++|+|++++|.+|....
T Consensus 165 ~I~~~~~kl~~~~g~ywrg~~ 185 (614)
T PLN02837 165 KINKKAVELESVAGAYWRGDE 185 (614)
T ss_pred ccccceEEEEEeehhhhcccc
Confidence 78 99999999999999433
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-11 Score=139.02 Aligned_cols=113 Identities=25% Similarity=0.334 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 282 MEGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
+.++|..|+++.+|... ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 13 ~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~---~m~~lI~~~~pi~~~~------------- 76 (575)
T PRK12305 13 AAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEK---KMKKIIKRGLPFEREE------------- 76 (575)
T ss_pred HHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE-------------
Confidence 57899999999998532 1478899999999 8999999999988874
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCCh
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDN 419 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~ 419 (715)
+++++|.++|..+.+|.++++..+ .+.|++|+||+|+|+|+||||||| |.++.|+|+.++|++|...
T Consensus 77 -----v~~eeA~~~f~~~~~k~~l~~~~~-~~~vri~~ig~~~d~c~Gthv~~T---~~i~~f~i~~~~~~~~~~~ 143 (575)
T PRK12305 77 -----VSREEAREEFANEPYKLELIDDIP-EEGITIYDNGDFEDLCRGPHVPNT---KFIKAFKLTSVAGAYWRGD 143 (575)
T ss_pred -----ecHHHHHHhCCcChhHHHhhhhcC-CCeEEEEEECCEEEECCCCCCCCc---cCCceeEEEEEcceEECCC
Confidence 799999999998899999998876 358999999999999999999999 7799999999999999853
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-11 Score=137.28 Aligned_cols=112 Identities=28% Similarity=0.408 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 282 MEGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
+.++|..|+++.+|... .++|.+++.+|.+ .|.++|+++.|+.+..
T Consensus 4 ~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~~t~eel~~Ie~---~m~~lI~~~~pi~~~~------------- 67 (563)
T TIGR00418 4 IAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEK---DMKEIAKKNYPVAKLS------------- 67 (563)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE-------------
Confidence 46889999999998542 2589999999998 8999999999998874
Q ss_pred ccccCcChhhHHhhcc-cCcchhhccccccCCCceEEEeeCC-eeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 344 PHVRHTGKIKAFKVTK-YNPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~-~~~~Kl~Ll~~~~~~~~vtlY~~g~-~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|. .+.+|.+|++.+...++|++|+||+ |+|||+|||||+| |.++.|+|..|.+++|-
T Consensus 68 -----~~~eeA~~~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~T---g~i~~f~l~~~~~g~~l 135 (563)
T TIGR00418 68 -----VSLEEALEAFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNT---SFIKAFKLEKVAGAYWR 135 (563)
T ss_pred -----ECHHHHHHHHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCC---CCCceeEEEEeccceEe
Confidence 79999999999 3488999999874457899999999 9999999999999 77999999999998886
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-10 Score=95.69 Aligned_cols=59 Identities=44% Similarity=0.578 Sum_probs=55.5
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+.|++|||+.+.+++ ++|+.|+|..|++++++.++.|+|||++|||++||+.+|.|+++
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEE
Confidence 578999999999998 79999999999999999999999999999999999999999987
|
The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A .... |
| >PRK07080 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=113.18 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=123.5
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV------------------ 515 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d------------------ 515 (715)
.|.|-.-+.=-.+.+.|...+...-...|+.++..|.+.+.+.|+++|++..|-+-|+.+..
T Consensus 37 ~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~~ll~~~~~~ 116 (317)
T PRK07080 37 DGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHSFCGNEAEHRRLLACLDRG 116 (317)
T ss_pred CccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecCCCCCCHHHHHHHHHHHhc
Confidence 56655544444455555555554444455999999999999999999999999888886531
Q ss_pred -------cCceEEEecCChHHHHHHHHhh-hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHH
Q psy10609 516 -------ENETYALKPMNCPGHCLIFDHR-VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIG 587 (715)
Q Consensus 516 -------~~~~l~LRPt~e~~~~~~~~~~-~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~ 587 (715)
+...++|.|.+|.+++.++.++ .... +- ..+--.|.|||+|.+ +++-|+.+|+|-|...+|+++++.
T Consensus 117 ~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~-~g-~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V~iGt~e~v~ 191 (317)
T PRK07080 117 EDWTESQKPTDVVLTPAACYPVYPVLARRGALPA-DG-RLVDVASYCFRHEPS---LDPARMQLFRMREYVRIGTPEQIV 191 (317)
T ss_pred CchhhhcCCCcceecccccccchhhhccCcccCC-CC-cEEEeeeeeeccCCC---CCcHHHhheeeeEEEEecCHHHHH
Confidence 1236899999999999887754 2322 12 455566999999996 478999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCC
Q psy10609 588 DEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGE 622 (715)
Q Consensus 588 ~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd 622 (715)
+-.+..++.+..+.+.|||++.+...+- -|+|.
T Consensus 192 ~~r~~w~e~~~~l~~~LgL~~~ve~AnD--PFF~~ 224 (317)
T PRK07080 192 AFRQSWIERGTAMADALGLPVEIDLAND--PFFGR 224 (317)
T ss_pred HHHHHHHHHHHHHHHHhCCceeEeecCC--ccccc
Confidence 7777788999999999999999987664 45443
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-09 Score=120.96 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=109.3
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch-------------------hhhhhhC-c---cc-----c
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-------------------KLWQTSG-H---WA-----H 505 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~-------------------el~~~sG-~---~~-----~ 505 (715)
+| ++++|.....++.+++.+++.|..+||++|.+|.++.. +.|..+. . .+ .
T Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~ 301 (489)
T PRK04172 223 PP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVER 301 (489)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHH
Confidence 45 88899999999999999999999999999999999954 3332211 0 00 0
Q ss_pred c------------CCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeE
Q psy10609 506 Y------------SENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRF 572 (715)
Q Consensus 506 ~------------~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REF 572 (715)
+ .-=+|.++++ ++.++|||.++++.++++.. ....|+|+|++|+|||+|..++ | |++||
T Consensus 302 v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d~--~--~l~Ef 373 (489)
T PRK04172 302 VKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTIDA--T--HLPEF 373 (489)
T ss_pred HHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCCc--c--cCCch
Confidence 0 0014555544 56799999998888887765 2368999999999999998764 5 77999
Q ss_pred eEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEE
Q psy10609 573 QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNL 610 (715)
Q Consensus 573 tq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v 610 (715)
+|.++.+++.+-. +.+++.++..+++.+|++ +++
T Consensus 374 ~ql~~~i~G~~~~----f~elkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 374 YQLEGIVMGEDVS----FRDLLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred heEEEEEEeCCCC----HHHHHHHHHHHHHHhCCceEEE
Confidence 9999999997421 345778899999999995 443
|
|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-08 Score=112.09 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-ceeecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGG-CLCYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
.-..|||++|||+.|++++||. ..+.|..+ .+++|+|+.....
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~----------------------------------- 496 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEK----------------------------------- 496 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCC-----------------------------------
Confidence 5689999999999999999987 45777544 6789999975322
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
++.+++..++..|.++|+++.|+....
T Consensus 497 -----------------------------------------------------it~edL~~IE~~vNeiI~~n~pV~~~~ 523 (594)
T PRK01584 497 -----------------------------------------------------MTDDEIKKVEDIVNLQIKNDLSVKKEV 523 (594)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 455667777788888888888777777
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEE
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAY 380 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY 380 (715)
++.++|.+... ..+ |. ... .+.|.+|
T Consensus 524 ~s~eEA~~~~~-----~~l--------------------------------------f~----------e~y-~~~VRVV 549 (594)
T PRK01584 524 MSLEEAREKGA-----MAL--------------------------------------FG----------EKY-EDIVKVY 549 (594)
T ss_pred cCHHHHHhcch-----hhh--------------------------------------cc----------ccC-CCcEEEE
Confidence 77776665321 001 10 000 2568899
Q ss_pred eeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 381 RCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 381 ~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
++|+| ++.|.|+||++| |.++.|++++..
T Consensus 550 ~Igd~d~elCGGTHV~nT---geIG~fkI~s~~ 579 (594)
T PRK01584 550 EIDGFSKEVCGGPHVENT---GELGTFKIQKEQ 579 (594)
T ss_pred EECCeeeeCCCCCCCCCc---ccCceEEEEecc
Confidence 99999 899999999999 779999888765
|
|
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-08 Score=79.76 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=54.9
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
|+|++|||+.+++++ |+|+.|+|+.|++.+++.+++|+|||+.++ +++++++++.++++|
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vd--l~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVD--LDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEE--TTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECC--CCCCcCCCCEEEEEC
Confidence 689999999999998 999999999999999999999999998885 589999999999875
|
The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A .... |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=101.16 Aligned_cols=140 Identities=14% Similarity=0.185 Sum_probs=98.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh------hhCcccccCCCceEEeec-----------------
Q psy10609 460 QPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ------TSGHWAHYSENMFSFDVE----------------- 516 (715)
Q Consensus 460 lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~------~sG~~~~~~~emy~~~d~----------------- 516 (715)
.+....-...+.+.++++|...||+++.+|..+-.+.|. -..|-..-..+.|.+++.
T Consensus 224 ~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk 303 (494)
T PTZ00326 224 GGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVK 303 (494)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHH
Confidence 344455567888999999999999999888544444442 223322222345655421
Q ss_pred ---------------------CceEEEecCChHHHHHHHHhhhccc---CC-CCeEEEEeccCcccCCCCCCCCcceeee
Q psy10609 517 ---------------------NETYALKPMNCPGHCLIFDHRVRSW---RE-LPLRMADFGVLHRNELSGALTGLTRVRR 571 (715)
Q Consensus 517 ---------------------~~~l~LRPt~e~~~~~~~~~~~~s~---~~-LPlrl~~~g~~FR~E~~~~l~GL~R~RE 571 (715)
...++||+-+++..++++......+ .. .|+|++++|+|||+|...+ + |++|
T Consensus 304 ~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Da--t--H~~e 379 (494)
T PTZ00326 304 KVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDA--T--HLAE 379 (494)
T ss_pred HHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCC--C--cCce
Confidence 1468999977777667666543221 22 3999999999999999875 6 9999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
|+|+|+.+++..- +.++ ++.++.++++++|+.
T Consensus 380 FhQ~Eg~vi~~~~-s~~~---L~~~l~~f~~~lG~~ 411 (494)
T PTZ00326 380 FHQVEGFVIDRNL-TLGD---LIGTIREFFRRIGIT 411 (494)
T ss_pred eEEEEEEEEeCCC-CHHH---HHHHHHHHHHhcCCC
Confidence 9999999998764 3343 678889999999984
|
|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.3e-06 Score=86.90 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
+++..+.+.+++.|.++||.+|.||.|.... +|. .-+.|.+.. .|+.++|+-..+-....+. .+.
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~----~~~----~~~~f~~~~~~~g~~~~L~~Spql~~~~~~----~~~- 68 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT----GGA----GARPFLVKYNALGLDYYLRISPQLFKKRLM----VGG- 68 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC----Ccc----ccceEEeeecCCCCcEEeecCHHHHHHHHH----hcC-
Confidence 5678999999999999999999999998642 221 124577743 3788999932222211111 121
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGA 593 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~ 593 (715)
+ -|++++++|||+|..+ .+ |++||+|.|++.-..+ ++.-...+++
T Consensus 69 -~-~~vf~i~~~fR~e~~~--~~--hl~EF~~le~e~~~~~~~dvm~~~e~l 114 (269)
T cd00669 69 -L-DRVFEINRNFRNEDLR--AR--HQPEFTMMDLEMAFADYEDVIELTERL 114 (269)
T ss_pred -C-CcEEEEecceeCCCCC--CC--cccceeEEEEEEecCCHHHHHHHHHHH
Confidence 2 1999999999999544 35 9999999999965443 4444444333
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=93.42 Aligned_cols=114 Identities=15% Similarity=0.038 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..+.+.+++.|.++||.+|.||+|....... .+...+..+ |.+.+ .|+.++|+-..+..+..++. +.
T Consensus 5 l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~--~~~~~f~~~-y~~~~~~~~~~~~L~~SPe~~~kr~la----~~ 77 (306)
T PRK09350 5 LLKRAKIIAEIRRFFADRGVLEVETPILSQATVTD--IHLVPFETR-FVGPGASQGKTLWLMTSPEYHMKRLLA----AG 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCC--ccCCceeee-eccccccCCcceEEecCHHHHHHHHhh----cc
Confidence 46788999999999999999999999998744321 122222222 33322 26788999322222322222 11
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIV 591 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~ 591 (715)
+ -|+|++|+|||+|.++ .+ +..||||.|++..+.+ ++.-.+.+
T Consensus 78 --~-~rvf~i~~~FR~e~~~--~~--H~~EFt~lE~y~~~~d~~dlm~~~E 121 (306)
T PRK09350 78 --S-GPIFQICKSFRNEEAG--RY--HNPEFTMLEWYRPHYDMYRLMNEVD 121 (306)
T ss_pred --c-cceEEecceeecCCCC--CC--CCcHHHhhhhhhhCCCHHHHHHHHH
Confidence 2 3999999999999985 36 8999999999876554 34334433
|
|
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=68.75 Aligned_cols=58 Identities=52% Similarity=0.851 Sum_probs=53.1
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++++++|+...++. ++|+.++++.++......+++|++||+++||++++..+++++++
T Consensus 2 ~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i 59 (61)
T cd01667 2 KITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEII 59 (61)
T ss_pred EEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEE
Confidence 57889999888877 89999999999887778899999999999999999999999998
|
In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. |
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-05 Score=79.73 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhhC----cccccCCCceEEee--c--CceEEEecCChHHHHHH
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSG----HWAHYSENMFSFDV--E--NETYALKPMNCPGHCLI 533 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~sG----~~~~~~~emy~~~d--~--~~~l~LRPt~e~~~~~~ 533 (715)
...-...+.+.+++.|...||+++..|.++... .|..-. |-..-..+.|.+.. . .+..+||..+.+.....
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHH
Confidence 344567788999999999999999999997643 344322 22112234565532 1 46789999888877665
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc-CcEEEEE
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLR 611 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L-Gl~~~v~ 611 (715)
. .+.+..|+|++++|+|||+|...+. .+.+|+|.|+-+.+..-. +..+..+...+++.| |...+++
T Consensus 95 l----~~~~~~p~kif~iG~VyR~D~~D~t----h~~~f~Qleg~~~~~~~~----f~~Lk~~l~~l~~~lfG~~~~~r 161 (247)
T PF01409_consen 95 L----NKHRPPPIKIFEIGKVYRRDEIDAT----HLPEFHQLEGLVVDKNVT----FEDLKGTLEELLKELFGIDVKVR 161 (247)
T ss_dssp H----TTTSHSSEEEEEEEEEESSSCSBSS----BESEEEEEEEEEEETTE-----HHHHHHHHHHHHHHHHTTTEEEE
T ss_pred H----HHhcCCCeEEEecCceEecCCcccc----cCccceeEeeEEEecccc----hhHHHHHHHHHHHHHhhcccceE
Confidence 5 2345689999999999999996642 578999999987765422 233567777888888 8764443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.4e-05 Score=80.52 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..|.+.+++.|.++||.+|.||+|+.... .|+. +.|++.--++.++|+...+-..-.+.. +
T Consensus 24 ~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~---e~~~-----~~f~~~~~~~~~yL~~Spql~lk~l~~----~--- 88 (322)
T cd00776 24 FRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGGA-----ELFKVSYFGKPAYLAQSPQLYKEMLIA----A--- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC---CccC-----CccccccCCCcceecCCHHHHHHHHHH----h---
Confidence 567889999999999999999999999987321 1222 234432235677787543332222221 1
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC-c-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT-V-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~-~-eqa~~E~~~~l 594 (715)
-=|+|++|+|||+|.+.. + -...||||.|++.... + ++..+..++++
T Consensus 89 -~~~vf~i~~~FR~E~~~~--~-rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 89 -LERVYEIGPVFRAEKSNT--R-RHLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred -hhhhEEeccccccCCCCc--C-CCcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 248999999999998652 1 2578999999998665 3 45555544444
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.8e-05 Score=79.18 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
+++.++.+.+++.|.+.||.+|.||.|..... .|. .+ |.+.. .+..+.|+- +.. ++...+...
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~g~----~~--f~~~~~~~~~~~~~L~~-Spq----l~lk~ll~~ 67 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---EGA----RD--FLVPSRLHPGKFYALPQ-SPQ----LFKQLLMVS 67 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---CCC----CC--ceeccccCCCceeeccc-CHH----HHHHHHHhc
Confidence 46788999999999999999999999975332 121 11 32211 233455663 222 233222211
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.++. | |..||+|.|++.-..+ ++.-++.++++
T Consensus 68 -g~-~~v~~i~~~fR~e~~~~--~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li 115 (280)
T cd00777 68 -GF-DRYFQIARCFRDEDLRA--D--RQPEFTQIDIEMSFVDQEDIMSLIEGLL 115 (280)
T ss_pred -Cc-CcEEEeccceeCCCCCC--C--ccceeEEeEeeeccCCHHHHHHHHHHHH
Confidence 12 48999999999999885 6 8889999999976544 45555544444
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.9e-05 Score=61.41 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=52.2
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++.+++|+.+.+.+ ++|+.|+++.++......+++|++||.+.||+.++..++.++++
T Consensus 2 ~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i 59 (60)
T cd01616 2 IIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEe
Confidence 56778888888877 89999999999887778899999999999999999999999987
|
TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=75.32 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=91.2
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhh----CcccccCCCceEEeecCceEEEecCChH
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTS----GHWAHYSENMFSFDVENETYALKPMNCP 528 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~s----G~~~~~~~emy~~~d~~~~l~LRPt~e~ 528 (715)
+| +.+.+-...-...+.+.+++.|...||+++.+|.+++... |..- .|-..-..+.|.+ ++..+||..+.|
T Consensus 98 p~-~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp 173 (339)
T PRK00488 98 PG-RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSP 173 (339)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcH
Confidence 45 3334444556778999999999999999999999986542 3322 2211112245555 245789998887
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
...+.... ...|+|+++.|+|||++...++ +..+|+|.|+-+....-. +..+......+++.+
T Consensus 174 ~qir~L~~-----~~~Pirif~~G~VyR~D~~Dat----H~~~FhQleglvvd~~vt----f~dLK~~L~~fl~~~ 236 (339)
T PRK00488 174 VQIRTMEK-----QKPPIRIIAPGRVYRNDSDDAT----HSPMFHQVEGLVVDKNIS----FADLKGTLEDFLKAF 236 (339)
T ss_pred HHHHHHHh-----cCCCeEEEEeeeEEEcCCCCcc----cCcceeeEEEEEEeCCCC----HHHHHHHHHHHHHHH
Confidence 77665543 4689999999999999985432 679999999988876521 223344555566655
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00043 Score=75.64 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe-----ecCceEEEecCChHHHHHHHHhhh
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-----VENETYALKPMNCPGHCLIFDHRV 538 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~-----d~~~~l~LRPt~e~~~~~~~~~~~ 538 (715)
.+++..|.+.+++.|.+.||.+|.||.|..... .| ..+.|.+. --++.+.|+...+...-.+....
T Consensus 22 ~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~---~~-----~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g- 92 (335)
T PF00152_consen 22 LRIRSAILQAIREFFDKRGFIEVDTPILTSSTC---EG-----GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEE---SEESSSS---SS-----SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhCCceEEcCceeecccc---Cc-----cccccccccchhhhcccceecCcChHHHHhhhcccc-
Confidence 567889999999999999999999999977431 11 34567777 22677889876665444333321
Q ss_pred cccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHH
Q psy10609 539 RSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLR 598 (715)
Q Consensus 539 ~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~ 598 (715)
+ =|+|++|+|||+|.+ +. .-.-||||.|++.-..+ ++.-+..++++..+.
T Consensus 93 -----~-~~vf~i~~~FR~E~~~~~----rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~ 144 (335)
T PF00152_consen 93 -----L-ERVFEIGPCFRNEESRTR----RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIF 144 (335)
T ss_dssp -----H-SEEEEEEEEE-BSSSCBT----TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHH
T ss_pred -----c-hhhhheecceeccCcccc----cchhhhhhhhhccccCcHHHhHHHHHHHHHHHH
Confidence 1 389999999999998 43 13469999999996544 455555555554443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.4e-05 Score=90.97 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.9
Q ss_pred CceEEEeeCC-eeeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 375 PTTTAYRCGP-LIDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 375 ~~vtlY~~g~-~~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+.|-++.+|+ .++.|-|+||++| |.++.|.+.+..
T Consensus 640 ~~VRVV~Ig~~d~~~CgGTHV~nT---geIg~~kI~~~~ 675 (865)
T PRK00252 640 DEVRVVSIGDFSIELCGGTHVSNT---GDIGLFKIVSES 675 (865)
T ss_pred CeEEEEEECCceeeCCCCCccCCc---ccCeEEEEEEEe
Confidence 5688899998 6799999999999 778888887766
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00037 Score=78.76 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.+.||.+|.||.|..... -|+ -+.|.+.--+..++|+-..+- +...+...
T Consensus 132 ~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~-----~~~f~v~~~~~~~yL~~Spql-----~~q~li~~- 197 (428)
T TIGR00458 132 IFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT---EGG-----TELFPITYFEREAFLGQSPQL-----YKQQLMAA- 197 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC---CCC-----cceeeeEecCCcEEECcCHHH-----HHHHHHhc-
Confidence 3577889999999999999999999999964221 122 234554333556777743322 22222111
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE-eCchhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTVEQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if-~~~eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. . --.-||||.|++.- .+-++..+..++++
T Consensus 198 g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 198 GF-ERVYEIGPIFRAEEHNT--H-RHLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred cc-CcEEEEecccccCCCCC--c-cchheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 12 48999999999998863 1 02359999999964 43345444444444
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.6e-05 Score=59.52 Aligned_cols=58 Identities=29% Similarity=0.372 Sum_probs=52.2
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
-|.+|||+.+.+.. ++|+.++++.++.+.....+++.+||++.|++.++.++++++++
T Consensus 2 ~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v 59 (60)
T cd01668 2 YVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEII 59 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEE
Confidence 36789999988877 89999999998877777889999999999999999999999987
|
RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00084 Score=69.03 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhhCccccc-C---CCceEEeecCceEEEecCChHHHHHHHHhhhccc
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSGHWAHY-S---ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~sG~~~~~-~---~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+.+++.+++.+...||+|+.|+.|.+.+ .+..-+..+.. . .+.+.+.+.- .-+|||+.-|++....+..
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N---- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKL---- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhc----
Confidence 35677888999999999999999998873 34433211100 0 0122332211 3589999999887655533
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcC
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 605 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LG 605 (715)
..|+|++++|+|||.+..+. + ++.||++.++.+.+.+- .+.++....+.+++.+|
T Consensus 78 -~~~~~lFEiG~Vf~~~~~~~--~--~~~E~~~l~~~~~g~~~----df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 -KPPIRIFSIGRVYRNDEIDA--T--HLPEFHQIEGLVVDKGL----TFADLKGTLEEFAKELF 132 (218)
T ss_pred -CCCeeEEEEcCeEECCCCCC--C--cCCccEEEEEEEECCCC----CHHHHHHHHHHHHHHhc
Confidence 67999999999999986442 2 34599999988887531 13445677778888888
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00048 Score=74.08 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccch-hhhhhhCccc-ccC-C--CceEEeecCceEEEecCChHHHHHHHHhh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-KLWQTSGHWA-HYS-E--NMFSFDVENETYALKPMNCPGHCLIFDHR 537 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~-el~~~sG~~~-~~~-~--emy~~~d~~~~l~LRPt~e~~~~~~~~~~ 537 (715)
+..-...+.+.+++.+...||+|+.+|.+++. ..+..-+..+ +.. + +.|.+. +.-+||+...|+.....+..
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N 146 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEEN 146 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhc
Confidence 44456778888999999999999999999886 3444332111 111 1 345554 35689999999887766543
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
. + .|+|++++|+|||.+.... . ++.||+|.++-+.... + .+..+....+.+++.+|+.
T Consensus 147 ~---~-~pirlFEiGrVfr~d~~d~--~--~~pef~ql~gl~~~~~--~--~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 147 E---K-PPIRIFSPGRVFRNDTVDA--T--HLPEFHQVEGLVIDKN--V--SFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred C---C-CCceEEEecceEEcCCCCC--c--cCChhhEEEEEEECCC--C--CHHHHHHHHHHHHHHhCCC
Confidence 2 2 7999999999999986432 1 3459999998866532 1 1444567778888888875
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00048 Score=74.62 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=94.5
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh------hhCcccccCCCceEEeecCceEEEecCC
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ------TSGHWAHYSENMFSFDVENETYALKPMN 526 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~------~sG~~~~~~~emy~~~d~~~~l~LRPt~ 526 (715)
.+|. ...|.+......+.+.+++.|...||+++..|.++. +.|. -..|-..-..+.|.++++.+.+.||--+
T Consensus 100 lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHT 177 (335)
T COG0016 100 LPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHT 177 (335)
T ss_pred CCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCCCceeecccC
Confidence 3555 555566777888999999999999999999996654 3332 1223222234566676543357899744
Q ss_pred hHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcC
Q psy10609 527 CPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 605 (715)
Q Consensus 527 e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LG 605 (715)
.+..++...... .-|+|+...|+|||+|..-++| +.+|+|+|.-++...-. +..+..+..++++.++
T Consensus 178 s~vq~R~l~~~~----~~P~k~~~~grvyR~D~~DaTH----s~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAENA----KIPIKIFSPGRVYRNDTVDATH----SPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhCC----CCCceEecccceecCCCCCccc----chheeeeEEEEEeCCcc----HHHHHHHHHHHHHHhc
Confidence 444444443222 2299999999999999776544 49999999977766422 3445677788888876
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=78.46 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.+.||.||.||.|.... .-|+ -+.|.+.--+..++|+-..+- ++..+...
T Consensus 135 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~---~eg~-----~~~f~~~~~~~~~~L~~Spql-----~~q~l~~~- 200 (437)
T PRK05159 135 IFKIRSEVLRAFREFLYENGFTEIFTPKIVASG---TEGG-----AELFPIDYFEKEAYLAQSPQL-----YKQMMVGA- 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcccccC---CCCC-----cceEeEEecCCceEecCCHHH-----HHHHHHhc-
Confidence 356788999999999999999999999995421 1122 224555434667788753332 22222211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcce-eeeEeEeeEEE-EeC-chhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTR-VRRFQQDDAHI-FCT-VEQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R-~REFtq~d~~i-f~~-~eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. . | .-||||.|++. |.. -++.-...++++
T Consensus 201 g~-~rVf~i~~~FR~E~~~t--~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 201 GF-ERVFEIGPVFRAEEHNT--S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred CC-CcEEEEeceeeCCCCCC--c--ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 12 48999999999999874 1 3 36999999996 554 345545444444
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=79.57 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec---CceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++.++...+++.+...||.+|+||+|..+.- ++-.+ |-+-.+ |+-|+| |-+. .+|++.+.
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP-------EGARD--fLVPSRv~~G~FYAL-PQSP----QlfKQLLM 205 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP-------EGARD--FLVPSRVHPGKFYAL-PQSP----QLFKQLLM 205 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC-------ccccc--cccccccCCCceeec-CCCH----HHHHHHHH
Confidence 4567889999999999999999999999976431 11112 333222 444555 3232 23554321
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHHHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSI 603 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l~~~~~il~~ 603 (715)
- . -==|+||+.+|||+|-.-+ - |.-||||.|++. |++.++.....+. +...+++.
T Consensus 206 v-s-GfdRYyQIarCFRDEDlRa--D--RQPEFTQiD~EmSF~~~edv~~~~E~---l~~~vf~~ 261 (585)
T COG0173 206 V-A-GFDRYYQIARCFRDEDLRA--D--RQPEFTQIDLEMSFVDEEDVMELIEK---LLRYVFKE 261 (585)
T ss_pred H-h-cccceeeeeeeeccccccc--c--cCCcceeEeEEeecCCHHHHHHHHHH---HHHHHHHH
Confidence 1 1 1238999999999998643 2 889999999997 8887655554443 44555553
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00042 Score=75.88 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhh-hhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhccc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~-~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
-.+++..|.+.+++.|.+.||.+|.||.|....-- -..|. + ..-..|.+..-+..++|+...+-. -.+... +
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~---g- 101 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGS-D-LPVKQISIDFYGVEYYLADSMILH-KQLALR---M- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccc-c-CCccccccccCCCceeeccCHHHH-HHHHHh---h-
Confidence 35678899999999999999999999999864100 00110 0 001122222235678887643332 222221 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ =|+|++|+|||+|.++. .+-...-||||.|++.-..+ ++..+..++++
T Consensus 102 --~-~rVfeI~p~FR~E~~~~-~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 102 --L-GKIFYLSPNFRLEPVDK-DTGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred --c-CcEEEEeccccCCCCCC-CCCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 2 48999999999999753 01126789999999965543 44444444444
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00048 Score=80.18 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++..+.+.+++.|.+.||.||.||.|....- .|- ++ |.+.. .+.-|+|+- +.. +++..+.
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---eGa----r~--f~vp~~~~~~~~y~L~q-SpQ----lykq~l~ 202 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---EGA----RD--YLVPSRVHKGEFYALPQ-SPQ----LFKQLLM 202 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---CCC----cc--eeeeeecCCCceeecCC-CHH----HHHHHHH
Confidence 3567889999999999999999999999976321 111 11 22221 234455652 222 2333221
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
. ..+ =|+|++|+|||+|.+.+ . |--||||.|++. |..-++.....++++
T Consensus 203 v-~G~-ervfqI~~~FR~E~~~t--~--r~pEFT~le~E~af~d~~dvm~~~E~li 252 (583)
T TIGR00459 203 V-SGV-DRYYQIARCFRDEDLRA--D--RQPEFTQIDMEMSFMTQEDVMELIEKLV 252 (583)
T ss_pred h-ccc-CcEEEEcceeeCCCCCC--C--CCcccCcceeeecCCCHHHHHHHHHHHH
Confidence 1 112 48999999999999875 4 889999999996 543345545444444
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00089 Score=73.18 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..+...+++.|.+.||.+|.||.|.... ..++. +.|.+.. .+...+|+-..+- +...+...
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~---~~~~~-----~~f~~~~~~~~~~~yL~~Spql-----~~k~ll~~ 74 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA---GGAAA-----RPFITHHNALDMDLYLRIAPEL-----YLKRLIVG 74 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC---CCccc-----eeEEeccCCCCcceeeccCHHH-----HHHHHHhc
Confidence 46778999999999999999999999997643 11111 2343321 1456677643322 22222111
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
.+ =|+|++|+|||+|.++. -.+-||||.|++.-..+ ++....+++++.
T Consensus 75 -g~-~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~~~~~m~~~e~li~ 123 (329)
T cd00775 75 -GF-ERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLFS 123 (329)
T ss_pred -CC-CcEEEEeccccCCCCCC----CCCCceEEEEEeeecCCHHHHHHHHHHHHH
Confidence 12 58999999999999864 26789999999865443 455555444443
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=58.30 Aligned_cols=60 Identities=32% Similarity=0.409 Sum_probs=52.6
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
++|++|+|+.+.++. ++|+.++++.++....+.+++|++||++++ +++.+.+++.+++++
T Consensus 1 ~~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~d--L~~~l~~~~~ie~i~ 60 (61)
T cd01667 1 IKITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVD--LSRPLEEDCELEIIT 60 (61)
T ss_pred CEEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEec--CCcCcCCCCEEEEEe
Confidence 468899999899998 999999999998877889999999999975 578888888888876
|
In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. |
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=86.74 Aligned_cols=125 Identities=22% Similarity=0.373 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCce-eecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGCL-CYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
.-+-+||..|||..|++++||..+ ..|..+ .+++|+|+.....
T Consensus 555 ~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~----------------------------------- 599 (851)
T TIGR00344 555 RIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRA----------------------------------- 599 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCC-----------------------------------
Confidence 346899999999999999998654 344433 5679999964322
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
+|.+++..++..+.++|.++.|+....
T Consensus 600 -----------------------------------------------------lt~eel~~IE~~vNelI~~n~pV~~~~ 626 (851)
T TIGR00344 600 -----------------------------------------------------LTREELEKIEDLVNEQILANIPIKVIF 626 (851)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 566778889999999999999999999
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCC-cccccCCccccCcChhhHHhhcccC
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~-~~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
++.++|.+++. ..+..++. ...+.++.+|+ .+..|-|+|+++|+....+++.+..
T Consensus 627 ~~~eeA~~~~~-----~~~~~e~y-~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~ 682 (851)
T TIGR00344 627 MDLDEAKAKGA-----FALFGEKY-GEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKES 682 (851)
T ss_pred eCHHHHHhcch-----hhhcCCCC-CCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEe
Confidence 99999998764 23333332 34577899999 5788999999999999999888853
|
The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). |
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00054 Score=80.18 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++..+...+++.|.+.||.||.||.|....- .|. ++ |.+.. .+..|+|+ .+... ++..+.
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~---ega----~~--f~v~~~~~~~~~~~L~-qSpql----~kq~l~ 205 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP---EGA----RD--YLVPSRVHPGKFYALP-QSPQL----FKQLLM 205 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC---CCC----cc--ceecccccCCceeecC-CCHHH----HHHHHH
Confidence 3567889999999999999999999999986421 121 11 33321 24455565 22222 333221
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
. ..+ =|+|++|+|||+|.+.. . |--||||.|++. |..-++..+..++++
T Consensus 206 ~-~g~-~rvfqi~~~FR~E~~~~--~--r~~EFt~le~e~af~~~~dvm~~~E~li 255 (588)
T PRK00476 206 V-AGF-DRYYQIARCFRDEDLRA--D--RQPEFTQIDIEMSFVTQEDVMALMEGLI 255 (588)
T ss_pred h-ccc-CceEEEeceeecCCCCC--C--cCcccccceeeecCCCHHHHHHHHHHHH
Confidence 1 112 48999999999999753 3 677999999996 443345555544444
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00035 Score=73.14 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred eEEeCcc----cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHH
Q psy10609 456 SCFFQPK----GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGH 530 (715)
Q Consensus 456 ~~~~lP~----G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~ 530 (715)
...|.|. ....+.++.+-++..|...||.||+||.|...-+- --|+..|..+-..-.. ++..++|.+..|-..
T Consensus 4 ~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt--d~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~m 81 (322)
T COG2269 4 TPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT--DIHLHPFETEFLGPGGAKGKPLWLHTSPEYHM 81 (322)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC--ccceeeeeeEEeccCccccceeeeecCcHHHH
Confidence 4556653 24567899999999999999999999999653221 1233333322221111 246788887666555
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
-.+.+. .--+++|+|+||||+..|++|- -||||.|-+-.+.+ .....|...+++
T Consensus 82 KrLLAa-------g~~~ifql~kvfRN~E~G~~H~----PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 82 KRLLAA-------GSGPIFQLGKVFRNEEMGRLHN----PEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred HHHHHc-------cCCcchhhhHHHhcccccccCC----CceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 444432 2236899999999999876544 79999999998776 334444444443
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0007 Score=77.03 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---------cCceEEEecCChHHHHHHH
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---------ENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---------~~~~l~LRPt~e~~~~~~~ 534 (715)
.+++..|.+.+++.|.+.||.+|.||.|....- -|. .++|.+.. -+..++|+-... . +
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~---eg~-----~~~F~v~~~~~~~~~~~~~~~~yL~~Spq-l----~ 202 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPILTSNDC---EGA-----GELFRVSTDGIDFSQDFFGKEAYLTVSGQ-L----Y 202 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC---CCC-----CCceEecccccccchhccCCccccccCHH-H----H
Confidence 478889999999999999999999999976431 111 23344431 145556664322 2 2
Q ss_pred HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 535 ~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
...+.+ .+ =|+|++|+|||+|.+.. . --+-||||.|++. |..-++.....++++
T Consensus 203 lq~l~~--g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 203 LETYAL--AL-SKVYTFGPTFRAEKSNT--S-RHLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred HHHHhh--cc-cCceEeeeccccCCCCC--C-cCcchhccceeeeecCCHHHHHHHHHHHH
Confidence 222211 22 48999999999998863 1 0235999999996 444344444444433
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00094 Score=75.99 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---------cCceEEEecCChHHHHHH
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---------ENETYALKPMNCPGHCLI 533 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---------~~~~l~LRPt~e~~~~~~ 533 (715)
-.+++..+.+.+++.|.+.||.+|.||.|.... .-|+ -+.|.+.. -+..++|+...+-.. .+
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~---~eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~ 202 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASD---CEGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EA 202 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccC---CCCC-----CCceEeecccccccccccCCCcccccCHHHHH-HH
Confidence 456788999999999999999999999998642 1122 23465521 145677775433222 22
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+. + .+ =|+|++++|||+|.+.. . --.-||||.|++.-..+ ++.....++++
T Consensus 203 l~----~--g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 203 YA----M--AL-GKVYTFGPTFRAENSNT--R-RHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred HH----h--cc-CCeEEeeeccccCCCCC--c-cccccccccceEEeccCHHHHHHHHHHHH
Confidence 21 1 22 48999999999998732 1 02369999999964333 44444444444
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00065 Score=78.58 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..+.+.+++.|.+.||.+|.||.|..... -|+ -+.|.+.--++.++|+-...- ++..... ..
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---egg-----a~~F~v~yf~~~~~L~qSpql-----~kq~li~-~g 290 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---EGG-----SAVFRLDYKGQPACLAQSPQL-----HKQMAIC-GD 290 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---ccc-----cceeeeccCCcceecCCCHHH-----HHHHHHH-hc
Confidence 467789999999999999999999999955321 121 235665444677888742222 2222211 12
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEE-EEeCc-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~-if~~~-eqa~~E~~~~l 594 (715)
+ =|+|++|+|||+|.+.. . --+-||||.|++ .|... ++....+++++
T Consensus 291 ~-~rVfeIgp~FRaE~s~t--~-RHl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 291 F-RRVFEIGPVFRAEDSFT--H-RHLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred C-CceEEEecccccCCCCC--C-ccchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 2 38999999999999632 1 124699999999 57654 34444444433
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00091 Score=78.49 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHH-cCcEEEecCcccchhhhhhhCcccccCCCceEEe--ecCceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRK-RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD--VENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~-~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~--d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++..+.+.+++.|.. .||.||.||.|....- .|- .+.+... ..+..|+|+- +.. +++..+.
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---eGa-----rdf~v~~~~~~g~~y~L~q-SPQ----lykQ~Lm 268 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---EGA-----RDYLVPSRVQPGTFYALPQ-SPQ----LFKQMLM 268 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---CCC-----cccEEeeecCCCcccccCC-CHH----HHHHHHH
Confidence 457788999999999986 9999999999975432 111 1222211 1244555652 222 2333222
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
.. .+ =|+||+++|||+|.+.. . |.-||||.|++. |..-++.....++++
T Consensus 269 ~~-G~-~RvFqIa~~FR~E~~~t--~--RhpEFTqLE~E~sf~d~~dvm~~~E~li 318 (652)
T PLN02903 269 VS-GF-DRYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLEDMLKLNEDLI 318 (652)
T ss_pred hc-cC-CcEEEEehhhccCCCCC--C--cccceeeeeeeecCCCHHHHHHHHHHHH
Confidence 11 12 48999999999999875 3 889999999996 544345555544444
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=74.89 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..+...+++.|.+.||.+|.||.|.... .|. ..+.|.+... +..++|+-..+- +...+..
T Consensus 171 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql-----~lk~l~v 237 (491)
T PRK00484 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA----GGA----AARPFITHHNALDIDLYLRIAPEL-----YLKRLIV 237 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCceeccC----CCc----cceeeeeccccCCCceEeccCHHH-----HHHHHHh
Confidence 356788999999999999999999999996431 221 1123433211 456677743332 2222211
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. .+ =|+|++|+|||+|.+.. -+.-||||.|++.-..+ ++.....++++
T Consensus 238 ~-g~-~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~~d~~d~m~~~E~li 286 (491)
T PRK00484 238 G-GF-ERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAYADYNDMMDLTEELI 286 (491)
T ss_pred c-cC-CcEEEEecceecCCCCC----CcCCceEEEEEEEecCCHHHHHHHHHHHH
Confidence 0 12 48999999999998864 27899999999864333 44444444444
|
|
| >KOG1637|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=8e-05 Score=82.08 Aligned_cols=141 Identities=30% Similarity=0.471 Sum_probs=90.3
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHh
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKE 292 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~ 292 (715)
++| ||||+.++..+|+||++|||.+ ++++++.+|+|+|||+..+ ++.+++.+| +++++.++
T Consensus 2 ~~~-Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~D--l~rp~e~~~-lell~f~~-------------- 62 (560)
T KOG1637|consen 2 IIV-LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWD--LDRPLEGDC-LELLKFDD-------------- 62 (560)
T ss_pred eee-cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceec--cCCcchhhH-HHHccCCC--------------
Confidence 344 9999999999999999999999 9999999999999999985 456666665 55555444
Q ss_pred cCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhcccccc
Q psy10609 293 KQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKV 372 (715)
Q Consensus 293 l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~ 372 (715)
+++.++|++++ .+++.+.+ ...|.| .+|+||-+..=-+ .+++. . +...
T Consensus 63 -----------~~~k~vfwhss--ahvlg~a~----e~~~g~----~lc~Gpp~~~gf~---yd~~~------~-i~~~- 110 (560)
T KOG1637|consen 63 -----------DEGKDVFWHSS--AHVLGEAL----EQEYGA----HLCIGPPIEEGFY---YDMLD------E-ISSN- 110 (560)
T ss_pred -----------cccceeeeehh--hhHhhHHH----HHhcCe----eEeeCCCCcCcee---hhhhc------c-cccc-
Confidence 44555666543 33443321 112333 4567774332100 00000 0 1000
Q ss_pred CCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCCh
Q psy10609 373 NTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDN 419 (715)
Q Consensus 373 ~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~ 419 (715)
+-+.+ -+||+++| |.+|.|++.+-+..+|...
T Consensus 111 d~~~~------------e~phi~~t---g~ika~k~~~nss~yw~~~ 142 (560)
T KOG1637|consen 111 DFPSI------------EAPHIRHT---GKIKAFKILKNSSAYWEGD 142 (560)
T ss_pred ccccc------------cccccccc---ceeeeeeeeccchhhhccc
Confidence 00111 13999999 6699999999999998865
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00089 Score=79.29 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
-.+++..+.+.+++.|.+.||.+|.||.|....- .|- ++-++.... .+.-|+|+- +.. +|+..+..
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eGA----r~~~~p~~~~~~~~y~L~q-SPQ----lykq~lm~- 221 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---EGA----RDYLVPSRIHPKEFYALPQ-SPQ----LFKQLLMI- 221 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---CCC----cceEEeeecCCCcceecCC-CHH----HHHHHHHh-
Confidence 4577889999999999999999999999976321 111 111111111 233455552 222 24433221
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
..+ =|+|++++|||+|.+.. - |.-||||.|++. |.+.++.....++++
T Consensus 222 ~G~-~rvfqI~~~FR~E~~~t--~--r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 222 AGF-ERYFQLARCFRDEDLRP--N--RQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred ccC-CcEEEEechhcCCCCCC--C--cCccccccceeeccCCHHHHHHHHHHHH
Confidence 112 48999999999999875 2 779999999995 554455555544444
|
|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00046 Score=74.56 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-----cCceEEEecCChHHHHHHHHhhhc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-----ENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-----~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
+++..+.+.+++.+.++||.+|.||.|+....-. ++ -+.|++.- .+...+|+-..+-..-.+ +.
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e--~~-----~~~F~~~y~~~~~~~~~~yL~~Spql~lk~l----l~ 70 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVTD--PH-----LDAFATEFLGPDGEGRPLYLQTSPEYAMKRL----LA 70 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCC--cC-----CcceeeeccCCCCCCcceeeecCHHHHHHHH----Hh
Confidence 5788999999999999999999999998753111 12 23344321 134667775333322211 11
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
+ .+ =|+|++|+|||+|.++. -..-||||.|++....
T Consensus 71 ~--g~-~rVfeigp~FRaE~~~~----rHl~EFtmLE~e~~~~ 106 (304)
T TIGR00462 71 A--GS-GPIFQICKVFRNGERGR----RHNPEFTMLEWYRPGF 106 (304)
T ss_pred c--cC-CCEEEEcCceeCCCCCC----CcccHHHhHHHHHHcC
Confidence 1 12 48999999999999863 2678999999986444
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=75.52 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe--ecCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD--VENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~--d~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|.+.||.||.||.|.... .|- ...-|... .-+.+++||-..+-..-.+.. .
T Consensus 253 fr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~----GGA----~a~PF~T~~n~~d~~lYLriSpEL~lKrLlv----g- 319 (585)
T PTZ00417 253 FITRTKIINYLRNFLNDRGFIEVETPTMNLVA----GGA----NARPFITHHNDLDLDLYLRIATELPLKMLIV----G- 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC----Ccc----cceeEEecccCCCcceEEeecHHHHHHHHHH----h-
Confidence 46788999999999999999999999997741 121 01112211 114578888544443333222 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|...+ ...-||||.|++.-..+ ++..+..++++
T Consensus 320 -G~-~rVfeIgp~FRnE~~~~----rHnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 320 -GI-DKVYEIGKVFRNEGIDN----THNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred -CC-CCEEEEcccccCCCCCC----CccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 12 38999999999999764 25689999999974443 44444444443
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=75.79 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|.+.||.||.||.|.... +|. ....|.+.. -+..++|+-..+-. ...+...
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~----~ga----~a~pF~t~~n~~~~~~yL~~SPELy-----lKrLivg 299 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVA----SGA----NAKSFVTHHNANAMDLFLRVAPELH-----LKQCIVG 299 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC----CCC----CccceEeecccCCCCEEecCChHHH-----HHHHhhc
Confidence 46788999999999999999999999995421 221 122354432 14567787544333 2222211
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. ...-||||.|++.-..+ +...+..++++
T Consensus 300 -G~-erVyeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 300 -GM-ERIYEIGKVFRNEDADR----SHNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred -cc-CCEEEEeceecCCCCCC----CccccccceeeeeecCCHHHHHHHHHHHH
Confidence 12 48999999999998864 27799999999975544 34444444433
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0026 Score=73.94 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
-.+++..|...+++.|.+.||.+|.||.|...+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 457889999999999999999999999997654
|
|
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00061 Score=53.67 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=51.1
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
+++.+++|+.+++++ |+|+.|+++.++....+.++++++||++.+ +++.+.+++.++|++
T Consensus 1 ~~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~--l~~~l~~~~~i~~i~ 60 (60)
T cd01616 1 MIIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVD--LSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECC--CCcCcCCCCEEEEeC
Confidence 467788999999998 999999999998887889999999999875 467777788888764
|
TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0031 Score=72.70 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..+.+.+++.|.+.||.+|.||.|... ..|- ...-|.... -+..++|+-..+-.+-.+. .+
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~----~gGa----~a~pF~t~~~~~~~~~yL~~SpELylKrli----vg 250 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNALDLDMYLRIAPELYLKRLV----VG 250 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec----CCCC----cccceecccccCCcceeeecCHHHHHHHHH----hc
Confidence 35678899999999999999999999999652 1121 011122111 1456778754433222222 11
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.... -..-||||.|++.-..+ ++.....++++
T Consensus 251 --G~-~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 251 --GF-ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred --cC-CcEEEEehhccCCCCCC----CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 12 48999999999998753 27799999999986544 45444444444
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0024 Score=73.45 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..|.+.+++.|.+.||.+|.||.|.... .|. .-..|.+.. -+..++||-..+-..-.+. .+
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~----gga----~a~pF~t~~~~~~~~~yLriSpELylKrli----vg 238 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP----GGA----NARPFITHHNALDMDLYLRIAPELYLKRLI----VG 238 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC----CCc----cceeEEeecccCCCceEEecCHHHHHHHHH----hC
Confidence 346778999999999999999999999997532 221 112243321 2456778864443322222 11
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. + =|+|++|+|||+|.+.. -..-||||.|++.-..+ ++..+..++++
T Consensus 239 G--~-~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 239 G--F-EKVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred C--C-CceEEEecceecCCCCC----cccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 1 2 48999999999998864 26789999999864443 44444444444
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0016 Score=75.55 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..+...+++.|.+.||.+|.||.|.... .-|+. +.|.+.--+..++|+-... +++...... .
T Consensus 213 ~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~---~egga-----~~F~v~yf~~~~~L~qSpq-----l~kq~li~~-g 278 (550)
T PTZ00401 213 FRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP---SEGGA-----NVFKLEYFNRFAYLAQSPQ-----LYKQMVLQG-D 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCccccCC---CCccc-----cccccccCCCCeecCCCHH-----HHHHHHHhc-C
Confidence 46778999999999999999999999997643 11222 2344432356677764222 233322211 1
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCc-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTV-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~-eqa~~E~~~~l 594 (715)
+ =|+|++|+|||+|.+.. . --.-||+|.|++. |+.. ++....+.+++
T Consensus 279 ~-~rVfeI~p~FRaE~s~T--~-RHl~EFt~Le~E~~~~~~y~evm~~~e~l~ 327 (550)
T PTZ00401 279 V-PRVFEVGPVFRSENSNT--H-RHLTEFVGLDVEMRINEHYYEVLDLAESLF 327 (550)
T ss_pred C-CCEEEEeCeEeCCCCCC--C-CCccchhhhhhhhHhcCCHHHHHHHHHHHH
Confidence 2 48999999999999863 1 0235999999964 6654 44444444444
|
|
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00016 Score=80.14 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec---CceEEEecCChHHHHHHHHhh
Q psy10609 463 GAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR 537 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~ 537 (715)
-.+++.++...+++.+. ..||.+|+||.|.+ ++ |... -|.+-.+ |.-|+| |-+... |++.
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFk-----rTPgGA~-----EFvVPtr~~~g~FYaL-pQSPQQ----fKQl 241 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-----RTPGGAR-----EFVVPTRTPRGKFYAL-PQSPQQ----FKQL 241 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhc-----cCCCccc-----eeecccCCCCCceeec-CCCHHH----HHHH
Confidence 45777888888888774 67999999999844 33 2211 1222211 223333 333332 3322
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHH
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGA 593 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~ 593 (715)
+.. .-==|+||+++|||+|..-. - |.-||||.|++. |...+...+.++.+
T Consensus 242 LMv--sGidrYyQiARCfRDEdlR~--D--RQPEFTQvD~EMsF~~~~dim~liEdl 292 (628)
T KOG2411|consen 242 LMV--SGIDRYYQIARCFRDEDLRA--D--RQPEFTQVDMEMSFTDQEDIMKLIEDL 292 (628)
T ss_pred HHH--hchhhHHhHHhhhcccccCc--c--cCCcceeeeeEEeccCHHHHHHHHHHH
Confidence 211 11238999999999998642 2 999999999998 65555444444333
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0049 Score=70.04 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCcEEE-ecCcccchhhh------hhhCcccccCCCceEEeec----------------------
Q psy10609 466 IYNTLVEFIRSEYRKRGFQEV-VSPNVYNVKLW------QTSGHWAHYSENMFSFDVE---------------------- 516 (715)
Q Consensus 466 l~~~L~~~i~~~~~~~Gy~eV-~tP~L~~~el~------~~sG~~~~~~~emy~~~d~---------------------- 516 (715)
-...+.+.+++.|...||+++ ..|.++. +.| .-..|=..-..+.|.+++.
T Consensus 222 Pl~~~~~ei~~if~~mGF~e~~~g~~ves-~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~ 300 (492)
T PLN02853 222 PLLKVRQQFRKIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGG 300 (492)
T ss_pred HHHHHHHHHHHHHHhCCCEEecCCCCeec-hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCC
Confidence 356788888999999999999 4666654 333 2223322223455666520
Q ss_pred --------------CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 517 --------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 517 --------------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
.+..+||.-+++..+++..... ....-|+|++.+|+|||+|.--++ .+.+|+|.|.-+.+.
T Consensus 301 ~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~-~~~~~p~k~fsigrVfR~d~iDat----H~~eFhQ~EG~vvd~ 375 (492)
T PLN02853 301 YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLA-QKGFKPKRYFSIDRVFRNEAVDRT----HLAEFHQVEGLVCDR 375 (492)
T ss_pred CCccccccccccchhcccccCCCCCHHHHHHHHHhh-ccCCCCcEEEeccceecCCCCCcc----cCccceeEEEEEEeC
Confidence 1468899844444444443221 112369999999999999986543 569999999999875
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCc
Q psy10609 583 VEQIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 583 ~eqa~~E~~~~l~~~~~il~~LGl 606 (715)
.- .+..++.+..++++.+|+
T Consensus 376 ~~----t~~~L~g~l~~f~~~lg~ 395 (492)
T PLN02853 376 GL----TLGDLIGVLEDFFSRLGM 395 (492)
T ss_pred CC----CHHHHHHHHHHHHHHcCC
Confidence 42 223356788889999987
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=72.69 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|...||.+|.||.|.... .|- ...-|.... -+..++|+-..+-.+-.+.. +
T Consensus 229 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----gGA----~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v----~- 295 (553)
T PLN02502 229 FRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----GGA----AARPFVTHHNDLNMDLYLRIATELHLKRLVV----G- 295 (553)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----CCc----cccceeeecccCCcceeeecCHHHHHHHHHH----h-
Confidence 46778999999999999999999999996532 221 112233221 15677887544433322222 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. ...-||||.|++. |..-++..+..++++
T Consensus 296 -g~-~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~~E~li 343 (553)
T PLN02502 296 -GF-ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMELTEEMV 343 (553)
T ss_pred -cc-CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHHHHHHH
Confidence 12 48999999999998864 3779999999986 443244444444444
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0046 Score=71.92 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--------c-------------------
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--------E------------------- 516 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--------~------------------- 516 (715)
.+++.++...+++.|.+.||.+|.||+|...+- .| +.+||.+.. .
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~---EG-----A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~ 297 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC---EG-----AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQ 297 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC---Cc-----cccCceeeeccccccccccccccccccCcccccccch
Confidence 578889999999999999999999999976431 11 224444321 0
Q ss_pred ---CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeC
Q psy10609 517 ---NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCT 582 (715)
Q Consensus 517 ---~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~ 582 (715)
++..+|.-.. ..+-.++. ..| =|+|++|+|||+|.+...+ -+-||+|.|++. |..
T Consensus 298 dyF~~~~~LtvS~-QL~~E~~~------~~l-~rVy~igp~FRaE~s~T~R---HL~EF~mlE~E~af~d 356 (565)
T PLN02603 298 DFFGKPAFLTVSG-QLNGETYA------TAL-SDVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFAD 356 (565)
T ss_pred hhhCcceeeccCc-hHHHHHHH------hcc-cceEEEecceeCCCCCCcc---ccccceeeeeeeecCC
Confidence 1112232211 11111111 122 4799999999999985311 346999999997 654
|
|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0022 Score=78.66 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCce-eecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGCL-CYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
.-+-.||..|+|..|++++||... ..|..+ .+.+++|+.....
T Consensus 593 ~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~----------------------------------- 637 (936)
T PLN02900 593 RIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKP----------------------------------- 637 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCC-----------------------------------
Confidence 346789999999999999998744 345433 5678999875332
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
+|.+++..++..+.++|.++.|+....
T Consensus 638 -----------------------------------------------------lt~eel~~IE~~vNe~I~~n~pV~~~~ 664 (936)
T PLN02900 638 -----------------------------------------------------MTPEELREVESLVNEWIGDALPVEAKE 664 (936)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 566778889999999999999999999
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCc--ccccCCccccCcChhhHHhhcccC
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL--IDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~--~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
++.++|.++.. . +.+..+..+ ..+.++.+|++ +..|-|+|+++|+....++|....
T Consensus 665 ~~~eEA~~~~g---~-~~~f~e~y~-~~VRVV~Ig~~~d~elCGGTHV~nTgeIG~fkIls~~ 722 (936)
T PLN02900 665 MPLADAKRING---L-RAVFGEKYP-DPVRVVSVGGVYSMELCGGTHVSNTAEAEAFKLLSEE 722 (936)
T ss_pred cCHHHHhhccC---h-HhhcCCCCC-CcEEEEEECCccceeCCCCCcCCccccCceEEEEEEe
Confidence 99999888543 1 222233323 35667788985 688999999999999999988853
|
|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00049 Score=52.83 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred eEEEeeCC-eeeeccCcCCCCCccCCCcchhhhhh
Q psy10609 377 TTAYRCGP-LIDLCRGPHNSSTYWEGKADAESLQR 410 (715)
Q Consensus 377 vtlY~~g~-~~D~c~GP~vpsT~~~G~lk~f~L~r 410 (715)
|.+|++|+ ++|.|.||||++| |.++.|.+.+
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T---~~i~~~~i~~ 32 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNT---GEIGHFKILK 32 (44)
T ss_dssp EEEEEETTTEEEEESS---SBG---GGG-CEEEEE
T ss_pred CEEEEECCeeEECCCCcccCCh---hEECcEEEEE
Confidence 57999999 9999999999999 7788888873
|
Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A .... |
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0038 Score=78.01 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++.++.+.+++.|.+.||.||+||.|...+ +|. .-+.|.+.. -+.+++|+-..+-..-.+.. +
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~----gGa----~a~pF~t~~~~~~~~~yLriSPELylKrLiv----g- 836 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH----GGA----NARPFVTHINAYDMDLYLRIAPELYLKRLCV----G- 836 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC----CCc----ccceeEeeecCCCccchhhcChHHHHHHHHh----c-
Confidence 46778999999999999999999999996422 121 112343322 24567777544433222221 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.... -..-||||.|++.-..+ ++..+..++++
T Consensus 837 -G~-erVFEIg~~FRnE~~~~----rHnpEFTmLE~y~a~~dy~d~m~l~E~li 884 (1094)
T PRK02983 837 -GV-ERVFELGRNFRNEGVDA----THNPEFTLLEAYQAHADYDTMRDLTRELI 884 (1094)
T ss_pred -cc-CceEEEcceecCCCCCC----CccccccchhhhhhcCCHHHHHHHHHHHH
Confidence 12 48999999999999864 26789999999975544 34444444444
|
|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0031 Score=77.22 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=65.8
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhh-ccCCCcEEEEeeCCc-ccccCCccccCcCh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKE-KVNTPTTTAYRCGPL-IDLCRGPHVRHTGK 351 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e-~~pi~~v~~y~~~~~-~d~~~~p~~~~t~~ 351 (715)
++.+++..++.++.++|.++.|.....++.++|.++.. ..+... ..+...+.+..+|+| +..|-|+|+++|+.
T Consensus 633 lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTge 707 (900)
T PRK13902 633 ITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYG-----FRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGE 707 (900)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhh
Confidence 56677888999999999999999998999999988654 233321 123456778899996 78899999999999
Q ss_pred hhHHhhccc
Q psy10609 352 IKAFKVTKY 360 (715)
Q Consensus 352 ~eA~eLf~~ 360 (715)
...+++.+.
T Consensus 708 IG~~kI~~~ 716 (900)
T PRK13902 708 IGPIKILKT 716 (900)
T ss_pred CeeEEEEEE
Confidence 999998885
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=66.37 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+...+++.|.+.||.+|.||.|...+. .-+.++|+++--+.+.+|.- +...+..++.. +.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg~elF~v~yf~~~a~Ltq-S~QLyke~~~~---al- 199 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT--------EGGGELFKVDYFDKEAYLTQ-SPQLYKEALAA---AL- 199 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCCceeEEEeecCcceEEec-CHHHHHHHHHH---Hh-
Confidence 3578899999999999999999999999977542 11346787754444555542 11222222221 11
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeC
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCT 582 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~ 582 (715)
=|+|.+|++||.|.+...+ -+-||+|.|+++ |+.
T Consensus 200 ---~rVf~igP~FRAE~s~T~R---HL~EF~~ld~Emaf~~ 234 (435)
T COG0017 200 ---ERVFTIGPTFRAEKSNTRR---HLSEFWMLDPEMAFAD 234 (435)
T ss_pred ---CceEEecCceecCCCCCcc---hhhhHheecceeccCc
Confidence 3899999999999997411 378999999999 554
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.013 Score=68.38 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
-.+++..+...+++.|.+.||.+|.||.|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 357888999999999999999999999997754
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=69.43 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
-.+++..|...+++.|...||.+|.||+|...+
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 457889999999999999999999999997654
|
|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0075 Score=73.93 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=65.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhc-cCCCcEEEEeeCCc-ccccCCccccCcCh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEK-VNTPTTTAYRCGPL-IDLCRGPHVRHTGK 351 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~-~pi~~v~~y~~~~~-~d~~~~p~~~~t~~ 351 (715)
+|.+++..++.++.++|.++.|.....++.++|.++.. ..+.... .+...+.+..+|+| +..|-|+|+++|+.
T Consensus 637 lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTge 711 (902)
T TIGR03683 637 ISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYG-----FRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGE 711 (902)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhc
Confidence 56667888999999999999999998999999987654 2333221 23456778889996 68899999999999
Q ss_pred hhHHhhccc
Q psy10609 352 IKAFKVTKY 360 (715)
Q Consensus 352 ~eA~eLf~~ 360 (715)
...+++.+.
T Consensus 712 IG~~kI~~~ 720 (902)
T TIGR03683 712 IGPIKILKT 720 (902)
T ss_pred CceEEEEEE
Confidence 999998885
|
This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. |
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0052 Score=49.29 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred eEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 214 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 214 ~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
-|-+|||+.++++. ++|+.++++.++......++++.+||+..+ +++.+.+++.+++++
T Consensus 2 ~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vd--l~~~l~~~~~ve~v~ 60 (60)
T cd01668 2 YVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVP--LSTVLKDGDIVEIIT 60 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECC--CCCCCCCCCEEEEEC
Confidence 35678999999997 999999999988888889999999999985 456677777777653
|
RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown. |
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0014 Score=49.97 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=32.8
Q ss_pred eEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 377 TTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 377 vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+.+|.+|++ .+.|.|||+++| +.++.|.|.+.++..|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t---~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNT---GEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCCh---hhCcEEEEEEEeeeecC
Confidence 358999998 899999999999 78999999988875554
|
The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. |
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.036 Score=64.83 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccccCC-CceEEeec--CceEEEecCChHHHHHHHHhhh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSE-NMFSFDVE--NETYALKPMNCPGHCLIFDHRV 538 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~~~~-emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~ 538 (715)
.....+.+.+.+++.+...||+|+.|..|.+.+. +..-+.. .+ +..++.+. .+.-+||++.-|++....+...
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~ 433 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLE---PEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK 433 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCC---CCCCeEEEcCCCccchheEeccchHHHHHHHHhcc
Confidence 3344566788889999999999999999999865 5543321 11 24555442 3455899999999888776554
Q ss_pred cccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEE
Q psy10609 539 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN 609 (715)
Q Consensus 539 ~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~ 609 (715)
.+..|+|++++|+||+.+..+.. ..+|+++..+-+.+.+ ++ +-.+....+.++..+|+++.
T Consensus 434 --~~~~~~~lFEiG~Vf~~~~~~~~----~~~e~~~l~~~~~g~~--~d--f~dlKg~ve~ll~~lgi~~~ 494 (552)
T PRK09616 434 --HREYPQKIFEIGDVVLIDESTET----GTRTERKLAAAIAHSE--AS--FTEIKSVVQALLRELGIEYE 494 (552)
T ss_pred --CCCCCeeEEEeeEEEecCCcccc----CcchhhEEEEEEECCC--CC--HHHHHHHHHHHHHHcCCeEE
Confidence 34689999999999987653321 2368888877766642 11 34456677788888888643
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.057 Score=61.20 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
..+-++++.+++.+...||-||+||.|-+- .|.. ...-|..... +-+++||=..|-.+-++ +..
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i-----~GGA---~ArPF~ThhNald~dlyLRIApELyLKRl----iVG-- 246 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPMLQPI-----PGGA---AARPFITHHNALDMDLYLRIAPELYLKRL----IVG-- 246 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEecccccccc-----CCCc---ccccceeeecccCCceEEeeccHHHHHHH----Hhc--
Confidence 456689999999999999999999999652 2211 1112332222 55788996555444333 322
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
-+ =|+|++|++||||--..+|- -|||+.|.+ +|-+-+..++++.+++++.+
T Consensus 247 G~-erVfEIgr~FRNEGid~tHN----PEFTmlE~Y------~AYaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 247 GF-ERVFEIGRNFRNEGIDTTHN----PEFTMLEFY------QAYADYEDLMDLTEELIKEL 297 (502)
T ss_pred Cc-hhheeeccccccCCCccccC----cchhhHHHH------HHHhHHHHHHHHHHHHHHHH
Confidence 12 38999999999997654344 789998754 56666666777777766654
|
|
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.025 Score=63.04 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-c-CceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-E-NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~-~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
..++-+|+.+++..+..+||-||+||.|.. ..|.. ...-|.... + +.+++||=..+-.+-.++..-+
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~-----iaGGA---~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGl--- 293 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNM-----IAGGA---TAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGL--- 293 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhcc-----ccCcc---ccCceeecccccCcceeeeechHHHHHHHHhccH---
Confidence 356779999999999999999999999854 12211 111233222 2 5678898655544444333222
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
-|+|++|+.||+|--..+|- -|||-+|.+ +|-+-+..+.++.+++++.+
T Consensus 294 ----drVYEIGr~FRNEGIDlTHN----PEFTTcEfY------~AYady~dlm~~TE~l~s~m 342 (560)
T KOG1885|consen 294 ----DRVYEIGRQFRNEGIDLTHN----PEFTTCEFY------MAYADYEDLMDMTEELLSGM 342 (560)
T ss_pred ----HHHHHHHHHhhhcCcccccC----CCcchHHHH------HHHhhHHHHHHHHHHHHHHH
Confidence 38899999999996553343 788876643 45555666777777777654
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.045 Score=61.67 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=61.6
Q ss_pred ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHH
Q psy10609 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDF 596 (715)
Q Consensus 518 ~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~ 596 (715)
..+.||+.+.++....... +......|+|++++|+|||+|.. .++ ++++|+|.++-+.+..-. +.++..+
T Consensus 181 ~~~lLRTHTTpgqirtL~~-L~~~~~~PiRIFsIGRVfRrD~~~DaT----Hl~eFhQlEGLVVdedVS----f~DLKgv 251 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSS-IIDKRKLPLKLFSIDRCFRREQREDRS----HLMTYHSASCVVVDEEVS----VDDGKAV 251 (533)
T ss_pred hCcccccCChhHHHHHHHH-HhhcCCCCeEEEeeeeEEecCCCCCCc----cCceeeeEEEEEECCCCC----HHHHHHH
Confidence 4678999777776655542 22245789999999999999964 321 679999999988876532 3335677
Q ss_pred HHHHHHHcCcE-EEEE
Q psy10609 597 LRNVYSIFGFT-FNLR 611 (715)
Q Consensus 597 ~~~il~~LGl~-~~v~ 611 (715)
...+++.||+. ++++
T Consensus 252 Le~LLr~LG~~~vRFR 267 (533)
T TIGR00470 252 AEGLLAQFGFTKFRFR 267 (533)
T ss_pred HHHHHHHhCCceEEec
Confidence 88899999974 5554
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.039 Score=66.05 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=59.1
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeec
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (715)
...+-|..|.|.++..+. |.||.|.|=.|....++..+.|+|||++.+|+++|.+.-.||+++
T Consensus 385 ~d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 385 PDEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred cceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCCCEEEEEe
Confidence 466889999999999998 999999999999999999999999999999999999999999994
|
|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.048 Score=66.76 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCc-e------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 283 EGLMKDIVKEKQPFE-R------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 283 e~lm~~aV~~l~P~~-r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
.++|..|+++.+... . ..+|.+++.+|++ .+.++|.++.|+....
T Consensus 563 tHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vNelI~~n~pV~~~~------------- 626 (851)
T TIGR00344 563 THLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED---LVNEQILANIPIKVIF------------- 626 (851)
T ss_pred HHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH---HHHHHHHhCCceEEEE-------------
Confidence 678888888877421 0 2589999999998 8999999998876653
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.+++... +..... .+.|-++++|++ +..|-|+||++| |.++.|++.+..
T Consensus 627 -----~~~eeA~~~~~~~-----~~~e~y-~~~VRVV~Ig~~d~e~CgGTHV~nT---geIg~~kI~~~~ 682 (851)
T TIGR00344 627 -----MDLDEAKAKGAFA-----LFGEKY-GEKVRVVSVGDVSVELCGGTHVRNT---GEIGLFKIVKES 682 (851)
T ss_pred -----eCHHHHHhcchhh-----hcCCCC-CCeEEEEEECCeeccCCCCCccCCh---hhCeEEEEEEEe
Confidence 7889988876521 111111 357999999994 799999999999 778888887766
|
The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). |
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.013 Score=68.27 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=47.4
Q ss_pred ecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC-ccccCcChhhHHhhcccC
Q psy10609 300 EMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG-PHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 300 ~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~-p~~~~t~~~eA~eLf~~~ 361 (715)
.+|.+++.++++.|+.+.++|+.+ .+ |+||+++|+|.| ||+|+|+..+||+|.+..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~ph~~~t~~~~~fkl~~~~ 101 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIENN----QI--VYKGNKVSIIEDKVSISTNLNPKYFEILNIS 101 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeecC----cE--EEccCceeecCCCCCCCCCCCcceEEEEEec
Confidence 478899999999888788788733 23 359999999999 999999999999998864
|
|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.092 Score=62.93 Aligned_cols=62 Identities=31% Similarity=0.401 Sum_probs=58.5
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
...+-|..|+|..+..+. ++||.|+|-.+....++..+.|+|||+..+|+.+|++.-.|+++
T Consensus 359 ~~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~ 420 (683)
T TIGR00691 359 NEEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEII 420 (683)
T ss_pred cCceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEE
Confidence 467889999999999998 99999999999999999999999999999999999999999999
|
(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. |
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.32 Score=49.08 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 468 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 468 ~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
+.+++.+++.+...||.|+.|..|.+.+.....+. + .++..++.+. .+.=+||++--|++....+... +.+..|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~-~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~-~~~~~~ 78 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDG-G--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNL-NRKNKP 78 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhccC-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHh-cCCCCC
Confidence 35677788889999999999999998865543321 1 1233444432 2334688888888877665443 345689
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hH------HHHHHHHHHHHHHHHHHcCcE
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI------GDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa------~~E~~~~l~~~~~il~~LGl~ 607 (715)
+|++++|+||..+.. ..+|....-+-+-+... .. ...+..+-...+.++..+|++
T Consensus 79 ~~lFEiG~vf~~~~~-------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~ 140 (198)
T cd00769 79 LRLFEIGRVFLKDED-------GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGII 140 (198)
T ss_pred EeEEEeEeEEecCCC-------CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCe
Confidence 999999999965431 11344444333333211 00 012344556666777777753
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.16 Score=61.50 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=69.3
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCc-ccccCCccccCcChh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHVRHTGKI 352 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~-~d~~~~p~~~~t~~~ 352 (715)
+|.+++..++.+..+.|.++.|.....++.++|.+. - . ..+..+..+ ..+.|..+|+| +.+|-|.|+++|+-+
T Consensus 607 it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-G---a-~alfGekY~-~~VRVV~ig~~SvElCGGTHv~~Tg~I 680 (879)
T COG0013 607 LTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-G---A-MALFGEKYG-DEVRVVEIGDFSVELCGGTHVSNTGDI 680 (879)
T ss_pred CCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-C---h-HhhcCCcCC-CeEEEEEECCceeeccCCcccCCccce
Confidence 677888889999999999999998889999999886 3 2 335555655 78889999998 789999999999999
Q ss_pred hHHhhcccC
Q psy10609 353 KAFKVTKYN 361 (715)
Q Consensus 353 eA~eLf~~~ 361 (715)
..|+|.+.+
T Consensus 681 G~fkI~~e~ 689 (879)
T COG0013 681 GLFKIISEE 689 (879)
T ss_pred eeEEEEEec
Confidence 999998864
|
|
| >KOG1035|consensus | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.29 Score=60.64 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=94.2
Q ss_pred EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHH
Q psy10609 457 CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFD 535 (715)
Q Consensus 457 ~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~ 535 (715)
..+.+.-..+++.+...+.++|+++|+.++.||.+... ..+ ..+..+-+.+-+. |.-+.|-..-..++++++.
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~---~~~---~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs 998 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLR---NAC---AYFSRKAVELLDHSGDVVELPYDLRLPFARYVS 998 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccc---ccc---chhccceeeeecCCCCEEEeeccccchHHHHhh
Confidence 55777888889999999999999999999999955432 221 1223455666665 5555555544444444332
Q ss_pred hhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHHHHHHHcCc---EEEEE
Q psy10609 536 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLRNVYSIFGF---TFNLR 611 (715)
Q Consensus 536 ~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~~il~~LGl---~~~v~ 611 (715)
. ...+-+|-|.+++|||.+.. . +. ||+.+++..|++.. .-.++| ++.++.+|... -| .+.+.
T Consensus 999 ~----N~~~~~Kry~i~rVyr~~~~-~-hP----~~~~ec~fDii~~t~sl~~AE---~L~vi~Ei~~~-~l~~~n~~i~ 1064 (1351)
T KOG1035|consen 999 R----NSVLSFKRYCISRVYRPAIH-N-HP----KECLECDFDIIGPTTSLTEAE---LLKVIVEITTE-ILHEGNCDIH 1064 (1351)
T ss_pred h----chHHHHHHhhhheeeccccc-C-CC----ccccceeeeEecCCCCccHHH---HHHHHHHHHHH-HhccCceeEE
Confidence 1 12356889999999999983 3 66 99999999999986 355666 45555565554 22 26677
Q ss_pred EccC
Q psy10609 612 LSTR 615 (715)
Q Consensus 612 l~~~ 615 (715)
+++.
T Consensus 1065 lnH~ 1068 (1351)
T KOG1035|consen 1065 LNHA 1068 (1351)
T ss_pred eChH
Confidence 7764
|
|
| >PRK08364 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.25 Score=41.65 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=47.4
Q ss_pred CcceEEEecCCc----EEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 35 GALNQVTLPDGK----IVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
|++++|++ +|+ .++... ++|+.|+.+.+.- ....++..+||++...+.+|..+.+++++
T Consensus 2 ~~mm~v~v-ng~~~~~~~~~~~-~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii 64 (70)
T PRK08364 2 MLMIRVKV-IGRGIEKEIEWRK-GMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEEEE-eccccceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEE
Confidence 45678888 666 555555 7899999998853 34568888999998899999999999998
|
|
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.32 Score=41.08 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=49.8
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
+..++|++ +|+.++... ++|+.|+.+.+. +....+++.+||++.. -+.+|..+.++|++
T Consensus 2 ~~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 2 SNPITLQV-NGETRTCSS-GTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred CCceEEEE-CCEEEEcCC-CCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 45688998 899888877 799999998764 4567889999999998 88889999999988
|
|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.16 Score=62.69 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCce-------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 283 EGLMKDIVKEKQPFER-------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 283 e~lm~~aV~~l~P~~r-------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
.++|..|+++.+.... ..+|.+++.+|++ .+-++|.++.|+....
T Consensus 601 tHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vNe~I~~n~pV~~~~------------- 664 (936)
T PLN02900 601 THLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVES---LVNEWIGDALPVEAKE------------- 664 (936)
T ss_pred HHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHHHHHHHHH---HHHHHHHhCCCeEEEE-------------
Confidence 6688888888765311 2478999999998 8999999988776553
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCe--eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPL--IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~--~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.++.... . +..... .+.|-++..|++ +..|-|+||++| |.++.|++.+.+
T Consensus 665 -----~~~eEA~~~~g~~---~-~f~e~y-~~~VRVV~Ig~~~d~elCGGTHV~nT---geIG~fkIls~~ 722 (936)
T PLN02900 665 -----MPLADAKRINGLR---A-VFGEKY-PDPVRVVSVGGVYSMELCGGTHVSNT---AEAEAFKLLSEE 722 (936)
T ss_pred -----cCHHHHhhccChH---h-hcCCCC-CCcEEEEEECCccceeCCCCCcCCcc---ccCceEEEEEEe
Confidence 7888888743210 0 001111 246888999995 789999999999 778888877766
|
|
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.13 Score=60.94 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=58.5
Q ss_pred cCcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 34 IGALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
....+-|-.|.|+++..+. |+||.|.|=.+-...++..+.|+|||++..|+.+|.+.-.||++
T Consensus 385 f~d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIi 447 (701)
T COG0317 385 FPDRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEII 447 (701)
T ss_pred cCceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEE
Confidence 4456778899999999988 99999999999999999999999999999999999999999999
|
|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.14 Score=63.02 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCCc-------------e------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccC
Q psy10609 282 MEGLMKDIVKEKQPFE-------------R------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-------------r------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~ 342 (715)
..++|..|+++.+... + ..+|.+++.+|++ .+-++|.++.|+....
T Consensus 595 AtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vN~~I~~n~pV~~~~------------ 659 (900)
T PRK13902 595 ATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIER---LANEIVMENRPVKVEW------------ 659 (900)
T ss_pred HHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHH---HHHHHHHcCCCEEEEe------------
Confidence 3668888888876521 0 2589999999998 7889999988776553
Q ss_pred CccccCcChhhHHhhcccCcchhhccc-cccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 343 GPHVRHTGKIKAFKVTKYNPFKLRILK-EKVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 343 ~p~~~~t~~~eA~eLf~~~~~Kl~Ll~-~~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.++..- ++.. ..+.++.|-+..+|++ +..|-|+||++| |.+..|++.+..
T Consensus 660 ------~~~~eA~~~~~~-----~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nT---geIG~~kI~~~e 717 (900)
T PRK13902 660 ------MDRNEAEQKYGF-----RLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNT---GEIGPIKILKTE 717 (900)
T ss_pred ------cCHHHHHhccch-----hhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcH---hhCeeEEEEEEE
Confidence 688888776542 2221 1122467999999997 799999999999 667777776664
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.12 Score=62.11 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=58.6
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeec
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (715)
...+-|..|+|+++..+. ++||.|.|-.|....++..+.|+|||+...|+++|.+.-.||+++
T Consensus 403 ~d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 403 DDRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred CCeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEe
Confidence 366888999999999998 999999999999999999999999999999999999999999993
|
|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.1 Score=62.66 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=60.8
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
...|-|--|.|..+.+|. |.|+.|.|-.+........++|+|||+++|| .+.+.+.+.||++|...
T Consensus 385 ~d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL--~~~L~~Gd~VeIiT~~~ 450 (702)
T PRK11092 385 PDEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPL--SQPLTSGQTVEIITAPG 450 (702)
T ss_pred cceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCC--CccCCCCCEEEEEeCCC
Confidence 467888889999999998 9999999999999999999999999999985 78999999999998765
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.66 Score=52.07 Aligned_cols=130 Identities=11% Similarity=0.081 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHHHHHc---CcEEEec-Ccccch-hhhhhh----CcccccCCCceEEeecCceEEEecCChHHHHHH
Q psy10609 463 GAFIYNTLVEFIRSEYRKR---GFQEVVS-PNVYNV-KLWQTS----GHWAHYSENMFSFDVENETYALKPMNCPGHCLI 533 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~---Gy~eV~t-P~L~~~-el~~~s----G~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~ 533 (715)
...-...+.+.+.+.|... ||+.+.. |.++.. .-|..= .|-..-..+.|.+. ...+||.=+.+....+
T Consensus 66 ~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~---~~~lLRTHTSa~q~~~ 142 (402)
T PLN02788 66 PDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD---AQTVLRCHTSAHQAEL 142 (402)
T ss_pred CCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec---CCccccCCCcHHHHHH
Confidence 3344556777777878776 9999984 444442 222222 23222223455553 3578997444444455
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh--------HHHHHHHHHHHHHHHHHHc-
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ--------IGDEIVGALDFLRNVYSIF- 604 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq--------a~~E~~~~l~~~~~il~~L- 604 (715)
+.. ..| ++...|.|||++.--++ -+.+|+|.|.-.+.+.++ .+..+..+..+.+.+++.+
T Consensus 143 l~~------~~~-~~~~~g~VyRrD~iD~t----H~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lf 211 (402)
T PLN02788 143 LRA------GHT-HFLVTGDVYRRDSIDAT----HYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLF 211 (402)
T ss_pred HHh------CCC-cEEEEeeEeecCCCCcc----cCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhc
Confidence 542 124 89999999999986553 459999999988864321 1112334555666777776
Q ss_pred Cc
Q psy10609 605 GF 606 (715)
Q Consensus 605 Gl 606 (715)
|+
T Consensus 212 g~ 213 (402)
T PLN02788 212 GD 213 (402)
T ss_pred CC
Confidence 76
|
|
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.3 Score=59.31 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCc-e------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccC
Q psy10609 282 MEGLMKDIVKEKQPFE-R------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~ 342 (715)
..++|..|+++.+-.. . ..+|.+++.+|+. ..-++|.++.|.....
T Consensus 569 ATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~---~vNe~I~~n~~V~~~~------------ 633 (879)
T COG0013 569 ATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIER---LVNEIIRENLPVKTEE------------ 633 (879)
T ss_pred HHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHH---HHHHHHHcCCceeEEE------------
Confidence 3678888888866421 1 3689999999998 6778898887765553
Q ss_pred CccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhhc
Q psy10609 343 GPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYG 413 (715)
Q Consensus 343 ~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G 413 (715)
+++++|.+. -. ..|..... .+.|-|...|+| +.+|-|.||++| |.+..|++...+|
T Consensus 634 ------m~~~eAk~~-Ga----~alfGekY-~~~VRVV~ig~~SvElCGGTHv~~T---g~IG~fkI~~e~~ 690 (879)
T COG0013 634 ------MDLDEAKAK-GA----MALFGEKY-GDEVRVVEIGDFSVELCGGTHVSNT---GDIGLFKIISEEG 690 (879)
T ss_pred ------ccHHHHHHh-Ch----HhhcCCcC-CCeEEEEEECCceeeccCCcccCCc---cceeeEEEEEecc
Confidence 788888776 21 11222223 267889999998 899999999999 8888888887774
|
|
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=57.70 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH------H----hcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCc
Q psy10609 186 AQMERITLWDKLKKQYDEEI------A----AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTR 255 (715)
Q Consensus 186 ~~~~r~~~~~~l~~~~~~~~------~----~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~ 255 (715)
...+++.-..+|-+-|.+.- . +.-+..|-|--|.|..+++|. |.|+.|.|=.+.......+++|+|||+
T Consensus 352 ~~~~~~~Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ 430 (701)
T COG0317 352 AYEEKIAWLRQLLEWQEESADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGR 430 (701)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcHHHHHHHhhcccCceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCE
Confidence 34566777778877776332 1 222557777789999999998 999999999999999999999999999
Q ss_pred ccccCCccccccCccccccCCCC
Q psy10609 256 ANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 256 ~~~ldl~~~i~~~~~ve~It~~d 278 (715)
+.|+ ++.+.+.+.||++|...
T Consensus 431 ivpl--~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 431 IVPL--TTKLQTGDQVEIITSKH 451 (701)
T ss_pred Eecc--ceecCCCCEEEEEeCCC
Confidence 9985 68999999999999876
|
|
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.54 Score=51.90 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=69.9
Q ss_pred cccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecC----ChHHHHHH
Q psy10609 461 PKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPM----NCPGHCLI 533 (715)
Q Consensus 461 P~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt----~e~~~~~~ 533 (715)
..-++++.++....++.|...||..|.||+|...+- .| .-+||.+.. ...++.=||+ +...|...
T Consensus 129 ~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC---EG-----aGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~ 200 (446)
T KOG0554|consen 129 GAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC---EG-----AGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA 200 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC---CC-----CcceEEEEecCcccccccCCceEEEEeceehHHH
Confidence 345788999999999999999999999999977541 12 236777643 2333444442 22333322
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeC
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCT 582 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~ 582 (715)
++.. =-|.|-+|++||.|.+...+ -+-||+|.|+++ |+.
T Consensus 201 ~a~~-------LsrvyTfgP~FRAEnS~tsR---HLAEFwMlEaE~AF~~ 240 (446)
T KOG0554|consen 201 MACA-------LSRVYTFGPTFRAENSHTSR---HLAEFWMLEAELAFAE 240 (446)
T ss_pred HHhh-------hcceEeeccceecccCCchh---HHhhhhhhhhHHHHHH
Confidence 2211 13788899999999987422 467899999887 554
|
|
| >PRK05659 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.51 Score=38.94 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=45.4
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+.... ++|+.|+..... .....++..+||.+.+ .+.+|..+.+++++
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 1 MNIQL-NGEPRELPD-GESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 36777 899888887 799999998764 3445566679998888 88999999999998
|
|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.33 Score=50.20 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccc-cCCccccCcChhhHHhh
Q psy10609 279 FPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDL-CRGPHVRHTGKIKAFKV 357 (715)
Q Consensus 279 ~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~-~~~p~~~~t~~~eA~eL 357 (715)
+..++..+.++|.++.|.....++.+++.++... .+..... +...+.+-.+|++... |-|.|+.+|+....+++
T Consensus 133 ~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~~~~~--~~~~~~~---~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I 207 (223)
T PLN02961 133 QDELEAEANELIAEGGKVSAAVLPYDEAAELCGG--SLPDYIA---KDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKV 207 (223)
T ss_pred HHHHHHHHHHHHHcCCceeEEEeCHHHHHHhcCC--cCCCcCC---CCCceEEEEECCCccCccCCcccCchhccccEEE
Confidence 4678999999999999999889999999887431 1111111 1234445567776656 99999999999888887
Q ss_pred ccc
Q psy10609 358 TKY 360 (715)
Q Consensus 358 f~~ 360 (715)
.+.
T Consensus 208 ~~~ 210 (223)
T PLN02961 208 TQI 210 (223)
T ss_pred EEE
Confidence 764
|
|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.34 Score=59.81 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCc-------------e------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccC
Q psy10609 282 MEGLMKDIVKEKQPFE-------------R------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-------------r------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~ 342 (715)
..++|..|+++.+... + ..+|.+++.+|++ .+-++|.++.|+....
T Consensus 599 AtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vN~~I~~n~pV~~~~------------ 663 (902)
T TIGR03683 599 ATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIER---LANRIVMENRPVSVKW------------ 663 (902)
T ss_pred HHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHH---HHHHHHHhCCCeEEEE------------
Confidence 3668888888876421 0 2589999999998 7889999988776553
Q ss_pred CccccCcChhhHHhhcccCcchhhcccc-ccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 343 GPHVRHTGKIKAFKVTKYNPFKLRILKE-KVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 343 ~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~-~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.+.... .+... .+..+.|-+..+|++ +..|-|+||.+| |.+..|++.+..
T Consensus 664 ------~~~~eA~~~~~~-----~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nT---geIG~~kI~~~~ 721 (902)
T TIGR03683 664 ------MDRNEAEQKYGF-----RLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNT---GEIGPIKILKTE 721 (902)
T ss_pred ------eCHHHHHhcCch-----hhhccCCCCCCeEEEEEECCeeeeCCCCCCccch---hcCceEEEEEEE
Confidence 688888765442 12211 122467889999997 799999999999 667777776654
|
This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. |
| >KOG2784|consensus | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.22 Score=54.22 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhh------hCcccccCCCceEEee---------------------c---
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT------SGHWAHYSENMFSFDV---------------------E--- 516 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~------sG~~~~~~~emy~~~d---------------------~--- 516 (715)
..++..-++++|-..||.|+-|-..+.++.|.= ..|-..-..+.|-+.+ +
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~yg 293 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYG 293 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcC
Confidence 346777888899999999998888777666531 1121111223444432 0
Q ss_pred ------------CceEEEec-CChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc
Q psy10609 517 ------------NETYALKP-MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 583 (715)
Q Consensus 517 ------------~~~l~LRP-t~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~ 583 (715)
-+..+||- |+......+|+-- ...--|-|++.+-+|||+|.--++ -+-||+|+|..+....
T Consensus 294 s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LA--k~~f~p~K~FSIDrVFRNEtvDaT----HLAEFHQVEGviad~g 367 (483)
T KOG2784|consen 294 SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLA--KKGFKPAKYFSIDRVFRNETVDAT----HLAEFHQVEGVIADKG 367 (483)
T ss_pred CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHH--hCCCCcccccchhhhhhccccchH----HHHHHhhhceeeecCC
Confidence 02456886 3334444344321 112359999999999999987753 5689999999887654
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 584 EQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 584 eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
-. +-.++.+..+++..+|+.
T Consensus 368 lt----LgdLig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 368 LT----LGDLIGILMEFFTKLGAT 387 (483)
T ss_pred Cc----HHHHHHHHHHHHhccCCc
Confidence 22 223578889999999874
|
|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.49 Score=56.82 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=60.3
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
...|-|--|+|..+.+|. |+|+.|+|-.+........++|+|||+.++ +++.+.+.+.|+++|...
T Consensus 359 ~~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~--l~~~l~~gd~vei~t~~~ 424 (683)
T TIGR00691 359 NEEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVP--LDKELENGDVVEIITGKN 424 (683)
T ss_pred cCceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECC--CCccCCCCCEEEEEeCCC
Confidence 568888889999999998 999999999999999999999999999887 478899999999998765
|
(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. |
| >cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.59 Score=38.62 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=44.0
Q ss_pred EEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
|++ +|+.++... ++|+.++.+.+.- ....++..|||++.+.+ .+|..+.+|+++
T Consensus 2 i~i-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 2 ITV-NGEPREVEE-GATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 455 788888877 7899999998763 34455667999999998 899999999998
|
ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity. |
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.63 Score=56.13 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHH---------HHH-hcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCccc
Q psy10609 188 MERITLWDKLKKQYDE---------EIA-AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRAN 257 (715)
Q Consensus 188 ~~r~~~~~~l~~~~~~---------~~~-~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~ 257 (715)
.+|++...+|.+-|.+ .++ .+-...|-|--|+|..+.+|. |.|+.|+|-.+........++|+|||+.+
T Consensus 371 ~~~~~wLr~lle~~~~~~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v 449 (743)
T PRK10872 371 EDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIV 449 (743)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEEC
Confidence 3556666666664442 111 222567888889999999998 99999999999999999999999999988
Q ss_pred ccCCccccccCccccccCCCC
Q psy10609 258 KSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 258 ~ldl~~~i~~~~~ve~It~~d 278 (715)
+ +++.+.+.+.||++|...
T Consensus 450 ~--l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 450 P--FTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred C--CCcCCCCCCEEEEEeCCC
Confidence 7 478899999999998765
|
|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.59 E-value=1 Score=37.92 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=48.2
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
+++|.+ +|+.++... .+|..|+.+.+. +....++..|||++.. .+..+....+++++
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv 62 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVV 62 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEE
Confidence 356777 699998887 599999998874 5568899999999999 99999988899988
|
|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.6 Score=51.29 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhh-hhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~-~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
....+.+.+.+++.+...||+|+.|-.|.+.+-. ..-+. + .++..++.+. .+.=+||++--|++....+...
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-- 435 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-- 435 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--
Confidence 3445677788899999999999999999988543 43321 1 1233444432 2334799988888877666544
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEE
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN 609 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~ 609 (715)
.+..|+|++++|++|...... . .+.+++.+..+-+.+.. ++ +-.+....+.++..||+++.
T Consensus 436 ~~~~~~~lFEiG~Vf~~~~~~---~-~~e~~~~~l~~~~~g~~--~d--f~d~Kg~ve~ll~~l~i~~~ 496 (551)
T TIGR00471 436 HHELPQKIFEIGDVVVKDDKS---E-TRSRVVTKLAVGITHSE--AN--FNEIKSIVAALARELGIEYE 496 (551)
T ss_pred cCCCCeeEEEEEEEEEcCCcc---c-cccceeeEEEEEEECCC--CC--HHHHHHHHHHHHHHcCCceE
Confidence 457899999999999543221 1 13445555554444421 12 34456677777788887643
|
Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. |
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.83 Score=38.60 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
..+|+|++ +|+.++++. ++|+.++.++.+ +...-||+.+|+++.+-+ ..+.+.+.+.+++++
T Consensus 2 ~~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 2 SNPITLQV-NGETRTCSS-GTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCceEEEE-CCEEEEcCC-CCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 34678887 778889887 999999998764 466788999999988521 123456666666664
|
|
| >PRK06437 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.3 Score=37.01 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.5
Q ss_pred cEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 46 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+.+.... ++|..|+++.+.- ....++..+||.+.+.+++|..+.+++++
T Consensus 13 ~~~~i~~-~~tv~dLL~~Lgi--~~~~vaV~vNg~iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 13 KTIEIDH-ELTVNDIIKDLGL--DEEEYVVIVNGSPVLEDHNVKKEDDVLIL 61 (67)
T ss_pred eEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECCCceEcCCCCEEEEE
Confidence 4465655 7899999998753 34556667999999999999999999998
|
|
| >PRK06944 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.5 Score=36.06 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.8
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+.... ++|+.++.+.+... +.++.-|||++++- +.+|..+.+|+++
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 1 MDIQL-NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred CEEEE-CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEE
Confidence 35777 889888876 78999999887542 44677899999865 5788899999998
|
|
| >PRK06488 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.7 Score=35.84 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+... .+|+.++.+.+. +....+++-||+++.+- +.+|..+.+++++
T Consensus 1 m~i~~-Ng~~~~~~--~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 1 MKLFV-NGETLQTE--ATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEIL 59 (65)
T ss_pred CEEEE-CCeEEEcC--cCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEE
Confidence 46777 88888873 479999998774 33466888999999987 7799999999998
|
|
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=88.00 E-value=0.6 Score=51.65 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
++..-+...+++.+...||.+|.||-|...+- .-+.++|.++=-++.-+|.- .|. +++.... ..++
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS--------EGGanvF~v~Yfk~~A~LAQ--SPQ---LyKQMaI-~gdf 294 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS--------EGGANVFRVSYFKQKAYLAQ--SPQ---LYKQMAI-CGDF 294 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC--------CCCceeEEEEeccCcchhhc--ChH---HHHHHHH-hcch
Confidence 45567888899999999999999999865331 12356777643222323321 122 2332211 1121
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI 579 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i 579 (715)
-|+|++|+|||.|.+.. +- -+-||+-.|++.
T Consensus 295 -~rVyeIGpVfRAEdSnt-hR--hltEFvGLD~EM 325 (533)
T KOG0556|consen 295 -ERVYEIGPVFRAEDSNT-HR--HLTEFVGLDLEM 325 (533)
T ss_pred -hheeeecceeeccccch-hh--hhHHhhCcchhh
Confidence 38999999999999874 32 467888777765
|
|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.8 Score=34.74 Aligned_cols=56 Identities=7% Similarity=0.118 Sum_probs=43.8
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+.... ++|+.++.+.+.. ..+.++.-||+++.+ -+.+|..+.+++++
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLF 60 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEE
Confidence 36777 899888877 7899999988653 345688899999865 34478888899988
|
|
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.8 Score=47.80 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
+++.++.+.+++.+...||.||..|+|+...+-.+ ..+|+++==|++-+|--.+ .+|-.. .|
T Consensus 244 K~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGG--------sTLFkldYyGEeAyLTQSS-----QLYLEt-----cl 305 (545)
T KOG0555|consen 244 KARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGG--------STLFKLDYYGEEAYLTQSS-----QLYLET-----CL 305 (545)
T ss_pred HHHHHHHHHHHHHHHhcCceecCCCceEEEEecCc--------ceEEeecccCchhhccchh-----HHHHHH-----hh
Confidence 56678888999999999999999999998776322 2345543224443343211 112111 12
Q ss_pred C--eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE
Q psy10609 545 P--LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI 579 (715)
Q Consensus 545 P--lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i 579 (715)
| -.+|.++..||.|++-. +- -+-|||.+|++.
T Consensus 306 pAlgdvy~I~~SyRAEkSrT-RR--HLsEytHVEaE~ 339 (545)
T KOG0555|consen 306 PALGDVYCIQQSYRAEKSRT-RR--HLSEYTHVEAEC 339 (545)
T ss_pred hhcCceeEecHhhhhhhhhh-hh--hhhhheeeeeec
Confidence 3 35899999999999853 22 467999999998
|
|
| >PRK07696 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.5 Score=35.31 Aligned_cols=57 Identities=11% Similarity=0.213 Sum_probs=45.2
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
++|++ +|+.+......+|+.|+.+.+. .....+++.+||++..-+ .+|..+.++|++
T Consensus 1 m~I~v-NG~~~~~~~~~~tv~~lL~~l~--~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLE--LDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIV 61 (67)
T ss_pred CEEEE-CCEEEEcCCCcccHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 35777 8888877763378999998764 456788899999988877 788889999988
|
|
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Probab=85.25 E-value=4.7 Score=47.90 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhccc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.-.+.+.+.+++.+...||+|+.|-.|.+.+. +..-+. +.-.....++.+. .+-=+||++--|++....+... +
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~-~- 473 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNR-EDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNK-D- 473 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcC-CccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhh-c-
Confidence 34577888899999999999999999998754 544331 1111123333332 2233688877777766555433 2
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+.+|+|++++|.||-...... .| .+|.....+-+.+.. ++ +..+-.+...++..||++
T Consensus 474 ~~~p~klFEiG~V~~~~~~~~-~~---~~e~~~la~~~~g~~--~~--f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 474 APKPIKLFEVSDVVLLDESKD-VG---ARNSRRLAALYCGTT--SG--FEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CCCCeeEEEeEeEEecCCccc-CC---cchhhEEEEEEECCC--CC--HhhHHHHHHHHHHHcCCc
Confidence 346999999999995432211 11 134444433333321 12 334556777788888874
|
|
| >PRK06083 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=84.63 E-value=1 Score=39.58 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 209 VPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 209 ~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
.+.+|+|++ +|+..++++ +.|+.+++... .++...||..+|+++.+-+ -...+.+.+.+|+++
T Consensus 15 ~~~~m~I~V-NG~~~~~~~-~~tl~~LL~~l--~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 15 AMVLITISI-NDQSIQVDI-SSSLAQIIAQL--SLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCceEEEEE-CCeEEEcCC-CCcHHHHHHHc--CCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEE
Confidence 345778877 788999987 99999999876 4567788889999988532 123455666676664
|
|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
Probab=84.53 E-value=0.43 Score=36.56 Aligned_cols=31 Identities=45% Similarity=0.716 Sum_probs=24.1
Q ss_pred EEEeeCC-cccccCCccccCcChhhHHhhccc
Q psy10609 330 TAYRCGP-LIDLCRGPHVRHTGKIKAFKVTKY 360 (715)
Q Consensus 330 ~~y~~~~-~~d~~~~p~~~~t~~~eA~eLf~~ 360 (715)
.+|++|+ +++.|-|||+++|+..++|++.+.
T Consensus 2 Rvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~ 33 (44)
T PF07973_consen 2 RVVRIGDFDVDLCGGTHVPNTGEIGHFKILKG 33 (44)
T ss_dssp EEEEETTTEEEEESS---SBGGGG-CEEEEEE
T ss_pred EEEEECCeeEECCCCcccCChhEECcEEEEEe
Confidence 5789999 899999999999999999999854
|
Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A .... |
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.30 E-value=4.1 Score=42.78 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccC-CC-cEEEEeeCCcccc--cCCccccCcChh
Q psy10609 277 LDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVN-TP-TTTAYRCGPLIDL--CRGPHVRHTGKI 352 (715)
Q Consensus 277 ~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~p-i~-~v~~y~~~~~~d~--~~~p~~~~t~~~ 352 (715)
++...+..+..+.++++.|..-..++.+++.++..- ..+.....| .. ++.+..+++ +|. |-|.|+++|+-.
T Consensus 138 ~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~----~~~~~~~~~~~~g~iRiV~I~d-id~qpCgGtHVk~T~EI 212 (241)
T COG2872 138 DEIEEVEALANELVKENLPVIIYFIPREEAEKLPGL----VKLKNKVPPDVEGKIRIVEIGD-IDVQPCGGTHVKNTGEI 212 (241)
T ss_pred hhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcCh----hhhcccCCccccceEEEEEECC-eeccCCCCcccCCccce
Confidence 345566778888899999988788999999998762 111111212 23 566778888 444 999999998877
Q ss_pred hHHhhccc
Q psy10609 353 KAFKVTKY 360 (715)
Q Consensus 353 eA~eLf~~ 360 (715)
..+++.+.
T Consensus 213 G~Iki~k~ 220 (241)
T COG2872 213 GEIKILKT 220 (241)
T ss_pred EEEEEEEE
Confidence 66666654
|
|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=2.5 Score=35.07 Aligned_cols=60 Identities=5% Similarity=0.075 Sum_probs=41.9
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
|+|++ +|+..++++ ++|+.++.+..+. ..+-||..+|+++.+-+ -.+.+.+.+.+++++.
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 34555 788889887 8999999988654 34568889999987532 1234566666776653
|
|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.68 E-value=3.5 Score=34.80 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=43.0
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
+|+|.+ +|+..+.+. ++|+.|+.++. .+...-+|+.+|+++.+-. .+..+++.+.+++++
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l--~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQL--GLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHh--CCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 466776 488889887 79999999885 4667889999999988621 123445555566554
|
|
| >PRK08364 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=80.61 E-value=4.1 Score=34.29 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=43.0
Q ss_pred CceeEEcCCCc----EEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 211 EEIQVTLPDGK----IVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 211 ~~I~I~lpdG~----~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
.+|+|++. |+ .+++++ ++|+.|++++.+. +...++..+|+++.+ .++.+...+.++++..
T Consensus 3 ~mm~v~vn-g~~~~~~~~~~~-~~tv~~ll~~l~~--~~~~v~v~vNg~iv~--~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 3 LMIRVKVI-GRGIEKEIEWRK-GMKVADILRAVGF--NTESAIAKVNGKVAL--EDDPVKDGDYVEVIPV 66 (70)
T ss_pred eEEEEEEe-ccccceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECC--CCcCcCCCCEEEEEcc
Confidence 35778874 44 566676 8999999998754 346688889999874 3566677777777653
|
|
| >TIGR01683 thiS thiamine biosynthesis protein ThiS | Back alignment and domain information |
|---|
Probab=80.10 E-value=5.1 Score=32.90 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 44 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
+|+.+.... ++|+.|+.+.+... ...++..|||++.+ -+.+|..+.+++++
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 788888877 78999999987643 46677889999874 33578888899988
|
This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 715 | ||||
| 1qf6_A | 642 | Structure Of E. Coli Threonyl-Trna Synthetase Compl | 3e-80 | ||
| 3ugq_A | 460 | Crystal Structure Of The Apo Form Of The Yeast Mito | 2e-78 | ||
| 1nyq_A | 645 | Structure Of Staphylococcus Aureus Threonyl-Trna Sy | 1e-72 | ||
| 1evk_A | 401 | Crystal Structure Of A Truncated Form Of Threonyl-T | 5e-71 | ||
| 3a32_A | 471 | Crystal Structure Of Putative Threonyl-Trna Synthet | 4e-35 | ||
| 3a31_A | 471 | Crystal Structure Of Putative Threonyl-Trna Synthet | 4e-32 | ||
| 1wwt_A | 88 | Solution Structure Of The Tgs Domain From Human Thr | 2e-22 | ||
| 1wwt_A | 88 | Solution Structure Of The Tgs Domain From Human Thr | 8e-10 | ||
| 1tje_A | 224 | Crystal Structure Of The Editing Domain Of Threonyl | 8e-08 | ||
| 2j3l_A | 572 | Prolyl-Trna Synthetase From Enterococcus Faecalis C | 2e-06 | ||
| 3ial_A | 518 | Giardia Lamblia Prolyl-Trna Synthetase In Complex W | 4e-06 | ||
| 2i4l_A | 458 | Rhodopseudomonas Palustris Prolyl-trna Synthetase L | 7e-04 |
| >pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed With Its Cognate Trna Length = 642 | Back alignment and structure |
|
| >pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast Mitochondrial Threonyl- Trna Synthetase Determined At 2.1 Angstrom Resolution Length = 460 | Back alignment and structure |
|
| >pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna Synthetase Complexed With An Analogue Of Threonyl Adenylate Length = 645 | Back alignment and structure |
|
| >pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna Synthetase With The Ligand Threonine Length = 401 | Back alignment and structure |
|
| >pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase Thrrs-1 From Aeropyrum Pernix Length = 471 | Back alignment and structure |
|
| >pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase Thrrs-1 From Aeropyrum Pernix (Selenomethionine Derivative) Length = 471 | Back alignment and structure |
|
| >pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl- Trna Synthetase Length = 88 | Back alignment and structure |
|
| >pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl- Trna Synthetase Length = 88 | Back alignment and structure |
|
| >pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna Synthetase Length = 224 | Back alignment and structure |
|
| >pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis Complexed With A Prolyl-Adenylate Analogue ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine) Length = 572 | Back alignment and structure |
|
| >pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With Prolyl- Adenylate Length = 518 | Back alignment and structure |
|
| >pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase Length = 458 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Score = 567 bits (1465), Expect = 0.0
Identities = 162/417 (38%), Positives = 234/417 (56%), Gaps = 38/417 (9%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYN--PFKLRILKEKV-NTPTTTAYRC 334
D +E M ++ ++ + ++ + E F +K+ IL E + + Y
Sbjct: 116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFH 175
Query: 335 GPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHN 394
+D+CRGPHV + FK+ K
Sbjct: 176 EEYVDMCRGPHVPNMRFCHHFKLMKT---------------------------------- 201
Query: 395 SSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSP 454
+ YW G ++ + LQR+YG ++ D K L + + EEAAKRDHRKIG++ +L+ E +P
Sbjct: 202 AGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAP 261
Query: 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514
G F+ G I+ L F+RS+ ++ +QEV P + + LW+ +GHW +Y + MF+
Sbjct: 262 GMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS 321
Query: 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ 574
EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HRNE SG+L GL RVR F Q
Sbjct: 322 SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQ 381
Query: 575 DDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQL 633
DDAHIFCT EQI DE+ G + + ++YS FGF ++LSTRPEK +G E+W++AE L
Sbjct: 382 DDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADL 441
Query: 634 EASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
+L P+ G+GAFYGPKI+ T+ D L R QC T+QLDF LP R + +YV
Sbjct: 442 AVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYV 498
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-28
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
+TLPDG +P DVA I GLA + I +VNG L D +E + +L +
Sbjct: 3 VITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSI 59
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EE + HS AH+LG
Sbjct: 60 I--------------------------------------TAKDEEGLEIIRHSCAHLLGH 81
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A+++++ + GP I+NGFYYD+ LD E +M +
Sbjct: 82 AIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 213 IQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
+TLPDG +P DVA I GLA + I +
Sbjct: 2 PVITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGR 39
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
Score = 556 bits (1434), Expect = 0.0
Identities = 154/421 (36%), Positives = 226/421 (53%), Gaps = 42/421 (9%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL 337
DF +E MK IV E ER + +++ E+F + +KL ++ T Y G
Sbjct: 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF 177
Query: 338 IDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSST 397
DLCRG HV T KIK FK+ +
Sbjct: 178 TDLCRGVHVPSTAKIKEFKLLST----------------------------------AGA 203
Query: 398 YWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFH-ELSPGS 456
YW G ++ + LQR+YG +F D K+LK ++ EE +RDHRKIG+E ELF + G
Sbjct: 204 YWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGL 263
Query: 457 CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-- 514
+ P GA I + +I + G+ V +P + NV L++TSGHW HY E+MF
Sbjct: 264 PLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL 323
Query: 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ 574
E E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G +HR E SGA++GL RVR
Sbjct: 324 DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTL 383
Query: 575 DDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTR----PEKYLGELEVWNKA 629
+D+HIF +QI +E ++ + +VY FGF ++ RLS R EKY + ++WNKA
Sbjct: 384 NDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKA 443
Query: 630 EKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAY 689
E L+ + + G + E G+ AFYGPK+D+ + A+ + +T QLDF LP RF+L Y
Sbjct: 444 ENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTY 503
Query: 690 V 690
+
Sbjct: 504 I 504
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-28
Identities = 48/166 (28%), Positives = 65/166 (39%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
+ PDG TT D+A IS GL + K NG L DL +PLET+ +E+
Sbjct: 5 NIQFPDGNKKAFDKG---TTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEI 61
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EEA V HSTAH++
Sbjct: 62 V--------------------------------------TPGSEEALEVLRHSTAHLMAH 83
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A++R+YG GP IE GFYYD +D E M++I
Sbjct: 84 AIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQI 129
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 211 EEIQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
E+I + PDG TT D+A IS GL + K
Sbjct: 2 EQINIQFPDGNKKAFDKG---TTTEDIAQSISPGLRKKAVAGK 41
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Length = 460 | Back alignment and structure |
|---|
Score = 545 bits (1406), Expect = 0.0
Identities = 144/298 (48%), Positives = 188/298 (63%), Gaps = 16/298 (5%)
Query: 408 LQRVYGISFPDNKQLKEWEKLQEEAAKRDHRK-IGREQELFFFHELSPGSCFFQPKGAFI 466
G+ P + K A + + Q+LF LSPGS FF P GA I
Sbjct: 8 HHHSSGLV-PRGSHMASATKNASSATPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKI 66
Query: 467 YNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF---DVENETYAL 522
+N L+EF++ + + K GF EVV+P +Y LW+ SGHW +Y+++MF D E E Y L
Sbjct: 67 FNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGL 126
Query: 523 KPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582
KPMNCPGHCLIF + RS+ ELPLR +DF LHRNE SGAL+GLTR+R+F QDD HIFCT
Sbjct: 127 KPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCT 186
Query: 583 VEQIGDEIVGALDFLRNVYS-IFGFT---------FNLRLSTRPEKYLGELEVWNKAEKQ 632
Q+ EI +L + VY+ IF F + + STRP+ ++G+L+VWN AE+
Sbjct: 187 PSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQV 246
Query: 633 LEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
L+ L G+PW NPGDGAFYGPK+DI +TD L++ HQ ATIQLDFQLP RF+L +
Sbjct: 247 LKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFK 304
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 | Back alignment and structure |
|---|
Score = 450 bits (1161), Expect = e-154
Identities = 126/257 (49%), Positives = 172/257 (66%), Gaps = 1/257 (0%)
Query: 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
RDHRKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + +
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 554
LW+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 555 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613
HRNE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LS
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
TRPEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 674 TIQLDFQLPIRFNLAYV 690
T+QLDF LP R + +YV
Sbjct: 241 TVQLDFSLPSRLSASYV 257
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 | Back alignment and structure |
|---|
Score = 414 bits (1067), Expect = e-139
Identities = 94/299 (31%), Positives = 143/299 (47%), Gaps = 24/299 (8%)
Query: 414 ISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEF 473
++ +K ++ + K D R +E F G F G I L E
Sbjct: 1 MASGQDKTHIDYAYELDITVKPDSRVPVFNREFATFT--GAGVPLFSLGGGPIRYALAEV 58
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLI 533
+ + +RG+ V +P + + +L++ SGH Y NM+ FD+E +A+KPMNCP H L+
Sbjct: 59 LAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILL 118
Query: 534 FDHRVRSWR---ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 590
F + V R LP ++ +FG +HR E SG++ GL RVR F QDDAHI ++ D +
Sbjct: 119 FLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVV 178
Query: 591 VGALDFLRNVYSI---FGFT---FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNS 639
+ ++ V G + F +RLS ++++G E W AE+ L + +
Sbjct: 179 YDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASR 238
Query: 640 FGEP----WTENPGDGAFYGPKIDITIT---DALKRPHQCATIQLDFQLPIRFNLA-YV 690
E E G+ AFYGPK+D + + + Q TIQ DF LP RF L V
Sbjct: 239 INEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVV 297
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 5e-75
Identities = 47/264 (17%), Positives = 83/264 (31%), Gaps = 39/264 (14%)
Query: 418 DNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQ----------------- 460
+ L + + ++ G + E+ F LS F
Sbjct: 6 RDPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLR 65
Query: 461 -PKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHY-SENMFSFDVEN 517
K L E + ++GF +VV+P + + + H +F D
Sbjct: 66 TVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLD--- 122
Query: 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDA 577
L+PM P ++ R + P+R+ + G +R E GA + F +
Sbjct: 123 GKKCLRPMLAPNLYTLWRELERL-WDKPIRIFEIGTCYRKESQGAQ----HLNEFTMLNL 177
Query: 578 HIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL 637
T + + + D R V G L T G + + + LE +
Sbjct: 178 TELGTPLEERHQRL--EDMARWVLEAAGIR-EFELVTESSVVYG--DTVDVMKGDLELAS 232
Query: 638 NSFG-----EPW-TENPGDGAFYG 655
+ G E W +P G +G
Sbjct: 233 GAMGPHFLDEKWEIFDPWVGLGFG 256
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 6e-44
Identities = 44/317 (13%), Positives = 92/317 (29%), Gaps = 53/317 (16%)
Query: 424 EWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEY-RKRG 482
W++ E ++ +E + S G P+ A I+ T + + E G
Sbjct: 191 LWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLG 250
Query: 483 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSF----------------------------- 513
++E++ P + ++W SGH ++
Sbjct: 251 YREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLI 310
Query: 514 --DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571
+ + CP + E+P+++ D SG + G+ RV
Sbjct: 311 KEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDE 370
Query: 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEK 631
F + + T E++ D ++++ R + ++ + + AE+
Sbjct: 371 FHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILD-IEWRKARVTPWFMAQEGLLGLAEE 429
Query: 632 QLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVK 691
+ + E + D Q +I D P FN+
Sbjct: 430 NTVGTTDY--EAC-------------LPYRGPDGEWLEFQNVSINGDKY-PKGFNVKLQS 473
Query: 692 NVRAQTH----ELPRTL 704
+ L R
Sbjct: 474 GDELWSGCSGVGLERWA 490
|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-31
Identities = 49/72 (68%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98
+VTLPDGK V A+SW+TTPY +A GIS+GLAD+T+IAKVN V+WDLDRPLE +C LELL
Sbjct: 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL- 71
Query: 99 KFDNEEASSVFW 110
KF++EEA +V+
Sbjct: 72 KFEDEEAQAVYS 83
|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-16
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 203 EEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
++ + I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+T+IAK
Sbjct: 2 SSGSSGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAK 50
|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
+TLPDG +P DVA I GLA + I +VNG L D +E + +L +
Sbjct: 3 VITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSI 59
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EE + HS AH+LG
Sbjct: 60 I--------------------------------------TAKDEEGLEIIRHSCAHLLGH 81
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A+++++ + GP I+NGFYYD+ LD E +M +
Sbjct: 82 AIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127
|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 7e-25
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 37/142 (26%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYN--PFKLRILKEKV-NTPTTTAYRC 334
D +E M ++ ++ + ++ + E F +K+ IL E + + Y
Sbjct: 116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFH 175
Query: 335 GPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHN 394
+D+CRGPHV + FK+ K
Sbjct: 176 EEYVDMCRGPHVPNMRFCHHFKLMKT---------------------------------- 201
Query: 395 SSTYWEGKADAESLQRVYGISF 416
+ YW G ++ + LQR+YG ++
Sbjct: 202 AGAYWRGDSNNKMLQRIYGTAW 223
|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 213 IQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
+TLPDG +P DVA I GLA + I +
Sbjct: 2 PVITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGR 39
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 38/244 (15%), Positives = 72/244 (29%), Gaps = 21/244 (8%)
Query: 393 HNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL 452
H+ + G S E ++ + K RE E
Sbjct: 4 HHHHHHHGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRR 63
Query: 453 SPGSCFFQPKGAFIY-NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG--HWAHYSEN 509
+ Y L I + RGF E+ SP + ++ + G + S+
Sbjct: 64 KKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQ 123
Query: 510 MFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRV 569
+F D + + L+PM P R+ P+++ + G +R E G +
Sbjct: 124 IFRVD---KNFCLRPMLTPNLYNYLRKLDRAL-PDPIKIFEIGPCYRKESDGK----EHL 175
Query: 570 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTR------PEKYLGEL 623
F G + + + G F + + + G+L
Sbjct: 176 EEFTMLVFWQM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHGDL 231
Query: 624 EVWN 627
E+ +
Sbjct: 232 ELSS 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 89/584 (15%), Positives = 168/584 (28%), Gaps = 214/584 (36%)
Query: 95 ELLNKFDNEEASSVFWLAFVN--------GVLWDLDRPLETNCKLELLNKFDNEEASSVF 146
++ K D + +FWL N +L L ++ N ++ D+ +
Sbjct: 175 KVQCKMDFK----IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLR 226
Query: 147 WHSTAHVLGEAM-ERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWD-KLKKQYDEE 204
HS L + + Y CL + L + + K ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCL-------------LVLLN--------VQNAKAWNAFN-- 263
Query: 205 IAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNEL 264
++ K I +T ++ S TT + S L
Sbjct: 264 LSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------------------ 301
Query: 265 CESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDL-IEMFKYNPFKLRI---- 319
E L+ + +DL E+ NP +L I
Sbjct: 302 -EVKSLLLKY------------------------LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 320 LKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLR-------ILKEKV 372
+++ + T + D + T I++ + P + R +
Sbjct: 337 IRDGLATWDNWKH---VNCD-------KLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSA 385
Query: 373 NTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAE-----------SL------QRVYGIS 415
+ PT L W ++ SL + I
Sbjct: 386 HIPTIL---------LSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 416 FPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIR 475
P L+ KL+ E A HR I + + F + L+
Sbjct: 429 -PS-IYLELKVKLENEYAL--HRSI-VDH--------------YNIPKTFDSDDLIPPYL 469
Query: 476 SEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVEN-ETYALKPMNCPGHCLIF 534
+Y Y+ H H+ +N+ E+ E L M +
Sbjct: 470 DQY------------FYS--------HIGHHLKNI-----EHPERMTLFRM------VFL 498
Query: 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594
D R + E +R N L L +++ ++ +I C + + +V A+
Sbjct: 499 DFR---FLEQKIRHDS---TAWNASGSILNTLQQLKFYKP---YI-CDNDPKYERLVNAI 548
Query: 595 -DFLRNVYSIF---GFTFNLRLSTRPEKYLGELEVWNKAEKQLE 634
DFL + +T LR++ E + ++ +A KQ++
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAE----DEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 68/519 (13%), Positives = 136/519 (26%), Gaps = 145/519 (27%)
Query: 1 MSETEIVAKVEELKLDGEKQIESYSDVKVP-KKCIGALNQVTL---PDGKIV------PA 50
M + + + L D + ++ V + L Q L P ++
Sbjct: 107 MMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 51 KSWRTTPYDVAAGISKGLADSTIIAKV-NGVLW-DLDRPLETNCKLELLNKF-------- 100
K+W VA + K+ + W +L LE+L K
Sbjct: 163 KTW------VAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 101 ---------------DNEEASSVFWLA--FVNGVL-----WDLD--RPLETNCKLELLNK 136
+ + + N +L + +CK+ LL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTT 272
Query: 137 FDNEEASSVFWHSTAHVLGEAMERVYG------------GCLCYGPPIE----NGFYYDM 180
+ + +T H+ + C P E N +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 181 YLDGEAQMERITLWDKLK----KQYDEEIAAKV----PEEIQ------VTLPDGKIVPAK 226
E+ + + WD K + I + + P E + P +P
Sbjct: 333 I--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 227 S----WRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVM 282
W + L +++ K K + S Y L L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISI--PSIYLELKVKLE--NE 442
Query: 283 EGLMKDIVKEKQPFERLE--------------------MKKEDLIEMFKYNP---FKLRI 319
L + IV + + +K + E R
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 320 LKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFK--VTKYNPFKLRILKEKVN---T 374
L++K+ +T G +++ ++K +K + +P R++ ++
Sbjct: 503 LEQKIRHDSTAWNASGSILNT--------LQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 375 PTTTAYRCGPLIDLCR---GPHNSSTYWEGKADAESLQR 410
DL R + + + E + +QR
Sbjct: 555 IEENLICS-KYTDLLRIALMAEDEAIFEEA---HKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 8e-05
Identities = 70/446 (15%), Positives = 130/446 (29%), Gaps = 139/446 (31%)
Query: 272 SLVSTLDFPVMEGLMK---------DIVKEKQPFER-------LEMKKEDLIEMF----- 310
+ V D ++ + K I+ K L K+E++++ F
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 311 KYN-PFKLRILKEKVNTPT--TTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPF-KLR 366
+ N F + +K + P+ T Y I+ R + V++ P+ KLR
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMY-----IE-QRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 367 I-LKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGK---ADAESLQRVYGISFPDNKQL 422
L E R + + G S GK A + K
Sbjct: 142 QALLE---------LRPAKNVLID-GVLGS-----GKTWVA-LDVCL--------SYKVQ 177
Query: 423 KE------WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRS 476
+ W L+ + Q+L +++ P + + + I++
Sbjct: 178 CKMDFKIFWLNLKNC--NSPETVLEMLQKL--LYQIDPNWT-SRSDHSSNIKLRIHSIQA 232
Query: 477 EYRKRGFQEVVSP-------NVYNVKLWQ----------TS-----------GHWAHYSE 508
E R R + NV N K W T+ H S
Sbjct: 233 ELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 509 NMFS--FDVENETYAL--KPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALT 564
+ S +E +L K ++C L P R++ R+ L+
Sbjct: 292 DHHSMTLT-PDEVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLA---- 342
Query: 565 GLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL-----RNVY---SIFGFTFNLRLSTR- 615
++ + +++ I +L+ L R ++ S+F S
Sbjct: 343 ---TWDNWKHVN------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF------PPSAHI 387
Query: 616 PEKYLGELEVWNKAEKQ-LEASLNSF 640
P L + W K + +N
Sbjct: 388 PTILLSLI--WFDVIKSDVMVVVNKL 411
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 55/267 (20%)
Query: 423 KEWEKLQEEAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEY 478
+ +I + S G I L I + +
Sbjct: 19 SHMNIAVLPNSPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALI-TSH 77
Query: 479 RKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-------------------------F 513
R+ G + + P V + + SG+ + +
Sbjct: 78 REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTT 137
Query: 514 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ 573
+ L P C + LR R E L R++ F+
Sbjct: 138 SLSPADLVLSPAACY-PVYPIAASRGPLPKGGLRFDVAADCFRRE---PSKHLDRLQSFR 193
Query: 574 QDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRP----------------- 616
+ T + + D + + + G TF + ++ P
Sbjct: 194 MREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQ 253
Query: 617 EKYLGELEVWNKAEKQ-LE-ASLNSFG 641
K+ EL + ++E+Q S N
Sbjct: 254 LKF--ELLIPLRSEEQPTACMSFNYHR 278
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-DVENETYALKPMNCPGHCL 532
+R E + G E++ P + LW+ SG + Y M D P N
Sbjct: 77 VREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITE 136
Query: 533 IFDHRVRSWRELPL 546
IF ++S++ LPL
Sbjct: 137 IFRAYIKSYKSLPL 150
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 100.0 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 100.0 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 100.0 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 100.0 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 100.0 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 100.0 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 100.0 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 100.0 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 100.0 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 100.0 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 100.0 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 100.0 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 100.0 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 100.0 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 100.0 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 100.0 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 100.0 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 100.0 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 99.98 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 99.97 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 99.97 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 99.96 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 99.96 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 99.96 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 99.94 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 99.94 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 99.94 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 99.94 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 99.93 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 99.93 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.93 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 99.92 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 99.92 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 99.91 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 99.9 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 99.9 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 99.88 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.88 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.87 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 99.8 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.7 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.66 | |
| 1wwt_A | 88 | Threonyl-tRNA synthetase, cytoplasmic; TGS domain, | 99.49 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.35 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 99.17 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 98.98 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 98.89 | |
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 98.85 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 98.82 | |
| 2kmm_A | 73 | Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy | 98.75 | |
| 1wwt_A | 88 | Threonyl-tRNA synthetase, cytoplasmic; TGS domain, | 98.75 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 98.62 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 98.61 | |
| 3hvz_A | 78 | Uncharacterized protein; alpha-beta protein, struc | 98.55 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 98.5 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 98.46 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 98.38 | |
| 2kmm_A | 73 | Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy | 98.36 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 98.25 | |
| 3hvz_A | 78 | Uncharacterized protein; alpha-beta protein, struc | 98.21 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 98.21 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 97.95 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 97.92 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 97.92 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 97.81 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 97.79 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 97.75 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.7 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 97.65 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 97.65 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.63 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 97.62 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 97.56 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 97.56 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 97.52 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.07 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.91 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.89 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.89 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.88 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 96.86 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 96.51 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 96.04 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 95.97 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 95.77 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 95.56 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 95.29 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 94.62 | |
| 1tyg_B | 87 | YJBS; alpha beta barrel, protein-protein complex, | 92.14 | |
| 1ryj_A | 70 | Unknown; beta/alpha protein, structural genomics, | 90.75 | |
| 1f0z_A | 66 | THis protein; ubiquitin fold, transport protein; N | 90.56 | |
| 2cu3_A | 64 | Unknown function protein; thermus thermophilus HB8 | 88.58 | |
| 1tyg_B | 87 | YJBS; alpha beta barrel, protein-protein complex, | 84.16 | |
| 2l32_A | 74 | Small archaeal modifier protein 2; protein BIN; NM | 84.12 | |
| 2k5p_A | 78 | THis protein, thiamine-biosynthesis protein; NESG, | 83.1 | |
| 2kl0_A | 73 | Putative thiamin biosynthesis THis; structural gen | 82.98 | |
| 1vjk_A | 98 | Molybdopterin converting factor, subunit 1; struct | 82.05 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 81.43 |
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-97 Score=859.34 Aligned_cols=502 Identities=40% Similarity=0.745 Sum_probs=474.5
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcCc
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGV 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (715)
++||||||+++.+.. ++||+|||+.||+++++.+++|+|||++|||++||+.||+|+++
T Consensus 2 ~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~-------------------- 60 (642)
T 1qf6_A 2 PVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII-------------------- 60 (642)
T ss_dssp CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEE--------------------
T ss_pred ceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEe--------------------
Confidence 789999999988886 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHH
Q psy10609 118 LWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDK 196 (715)
Q Consensus 118 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (715)
++++++|..++|||++|||++|++++||+ ++++||++++|||||++.+..
T Consensus 61 ------------------~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~----------- 111 (642)
T 1qf6_A 61 ------------------TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT----------- 111 (642)
T ss_dssp ------------------CTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEETTEEEEEEECSSC-----------
T ss_pred ------------------ecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCC-----------
Confidence 99999999999999999999999999976 799999999999999976433
Q ss_pred HHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 197 LKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 197 l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
+|.
T Consensus 112 -----------------------------------------------------------------------------~t~ 114 (642)
T 1qf6_A 112 -----------------------------------------------------------------------------LTQ 114 (642)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred -----------------------------------------------------------------------------CCH
Confidence 566
Q ss_pred CChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHH-hhccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 277 LDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRIL-KEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 277 ~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI-~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
+++..|+..|.++|+++.|+.+..++.++|.++|+. ++++.+++ +...+...+++|+||+|+|+|.|||+++|+...
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~ 194 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCH 194 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCEEEecCCCccCCCCcce
Confidence 788899999999999999999999999999999975 55788999 543223478899999999999999999999999
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
+|+|.+ +.++||+|+.++-+|+|++|..||++++|++|++..++++
T Consensus 195 ~fkl~~----------------------------------~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~eea~ 240 (642)
T 1qf6_A 195 HFKLMK----------------------------------TAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAA 240 (642)
T ss_dssp SEEEEE----------------------------------EEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEee----------------------------------eccccccCccCCceeEeeeccccCchhHHhhhhhhhhccc
Confidence 999888 6677999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
+||||+||++++||++++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||++|.++||..
T Consensus 241 ~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~ 320 (642)
T 1qf6_A 241 KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT 320 (642)
T ss_dssp TTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEE
T ss_pred cCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred eecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHH
Q psy10609 514 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 593 (715)
Q Consensus 514 ~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~ 593 (715)
+.++++++||||+|++++.+|+++++||++||+|++|+|+|||+|+++..+||+|+|||+|+|+|+||+++++++|+.++
T Consensus 321 d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~ 400 (642)
T 1qf6_A 321 SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGC 400 (642)
T ss_dssp EETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHH
T ss_pred ecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHH
Confidence 33578999999999999999999999999999999999999999999655899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCc-EEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcccc
Q psy10609 594 LDFLRNVYSIFGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 672 (715)
Q Consensus 594 l~~~~~il~~LGl-~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~ 672 (715)
++++.++|+.||| +|++.+++++++++|+.+.|+++++.++++|+..|++|.+++|+|+|||||+|+++.|++|+.|||
T Consensus 401 i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~ 480 (642)
T 1qf6_A 401 IRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQC 480 (642)
T ss_dssp HHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEe
Confidence 9999999999999 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCcccccCcEEEcCCCceeccc
Q psy10609 673 ATIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 673 ~TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
||+|+||++|+|||++|++.||++++|.
T Consensus 481 gti~~df~l~~r~~~~y~~~~g~~~~P~ 508 (642)
T 1qf6_A 481 GTVQLDFSLPSRLSASYVGEDNERKVPV 508 (642)
T ss_dssp EEEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred eeEEEeccCCccCCCEEEecCCCCcCcE
Confidence 9999999999999999999999988873
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-92 Score=822.10 Aligned_cols=503 Identities=40% Similarity=0.721 Sum_probs=471.3
Q ss_pred cceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhc
Q psy10609 36 ALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVN 115 (715)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (715)
.+++||+|||+++.+.. +||++|||+.|++++++.+++|+|||++|||++|++.||+|+++
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~------------------ 62 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV------------------ 62 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEE------------------
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEe------------------
Confidence 46889999999988876 89999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHH
Q psy10609 116 GVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLW 194 (715)
Q Consensus 116 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (715)
++++++|..+||||++|||++|++++||+ .+++||++++|||||+..+..
T Consensus 63 --------------------~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~~~g~~~Df~~~~~--------- 113 (645)
T 1nyr_A 63 --------------------TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQN--------- 113 (645)
T ss_dssp --------------------CTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSC---------
T ss_pred --------------------eccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCceEEEecCCCC---------
Confidence 99999999999999999999999999976 799999999999999975433
Q ss_pred HHHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCcccccc
Q psy10609 195 DKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274 (715)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~I 274 (715)
+
T Consensus 114 -------------------------------------------------------------------------------~ 114 (645)
T 1nyr_A 114 -------------------------------------------------------------------------------I 114 (645)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCC-CcEEEEeeCCcccccCCccccCcChhh
Q psy10609 275 STLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNT-PTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 275 t~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi-~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
|.+++..|+..|.++|+++.|+.+..++.++|.++|.+++++.+|++. .|. ..+.+|+||+|+|+|.|||+++|+...
T Consensus 115 t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~-~~~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~ 193 (645)
T 1nyr_A 115 SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDA-IPEDENVTLYSQGDFTDLCRGVHVPSTAKIK 193 (645)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCC-CSSSCCCEEEEETTEEEECCSCCCSCGGGCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhc-CCCCCeeEEEEECCEEEecCCcccCCCCCCc
Confidence 788999999999999999999999999999999999765678899975 343 478889999999999999999999998
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
+|+|.++ .+++|.|..++-+|+|++|.+|+++.+|.+|++..++++
T Consensus 194 ~fkl~~~----------------------------------~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~ea~ 239 (645)
T 1nyr_A 194 EFKLLST----------------------------------AGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERK 239 (645)
T ss_dssp EEEEEEE----------------------------------EEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEeee----------------------------------CchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhhhh
Confidence 8888873 335888888999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceE
Q psy10609 434 KRDHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~ 512 (715)
+||||+||++++||++++. ++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||+.|.++||.
T Consensus 240 ~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~ 319 (645)
T 1nyr_A 240 ERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFP 319 (645)
T ss_dssp HTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCC
T ss_pred hhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcce
Confidence 9999999999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee-cC-ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHH
Q psy10609 513 FDV-EN-ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 590 (715)
Q Consensus 513 ~~d-~~-~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~ 590 (715)
+.+ ++ +.++||||+|++++.+|++..+||++||+|++|+|+|||+|++|.++||+|+|||+|+|+|+||+++++.+++
T Consensus 320 ~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~ 399 (645)
T 1nyr_A 320 PMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEF 399 (645)
T ss_dssp CEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHH
T ss_pred eEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHH
Confidence 866 47 8999999999999999999999999999999999999999999866899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCc-EEEEEEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC
Q psy10609 591 VGALDFLRNVYSIFGF-TFNLRLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665 (715)
Q Consensus 591 ~~~l~~~~~il~~LGl-~~~v~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~ 665 (715)
.+++.++.++|+.||| +|++.+++++ ++++|+.+.|++++..|+++|+..|++|.+.+|+++|||||+|+++.|+
T Consensus 400 ~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~ 479 (645)
T 1nyr_A 400 KRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTA 479 (645)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhh
Confidence 9999999999999999 5999999987 7899999999999999999999999999999999999999999999999
Q ss_pred CCCccccccceeccCcccccCcEEEcCCCceeccc
Q psy10609 666 LKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 666 ~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
+||.|||||+|+||++|+|||++|++.+|+++.|.
T Consensus 480 lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~ 514 (645)
T 1nyr_A 480 MGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPV 514 (645)
T ss_dssp TSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred hCchhhcceEEeecccccccceEEECCCCCccCcE
Confidence 99999999999999999999999999999988874
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-59 Score=521.54 Aligned_cols=271 Identities=51% Similarity=0.972 Sum_probs=260.1
Q ss_pred HHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHH-HHcCcEEEecCcccchhhhhhhCcccccCCC
Q psy10609 431 EAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 509 (715)
Q Consensus 431 e~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~-~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e 509 (715)
.+++|||++||++++||++++.++|+++|+|.|+.++++|++++++.+ .++||++|.||+|++.++|++||||+.|.++
T Consensus 31 ~~~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~e 110 (460)
T 3uh0_A 31 ATPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADD 110 (460)
T ss_dssp CCHHHHHHHHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGG
T ss_pred CCCCCCHHHHHHhCCCceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccc
Confidence 457899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEeec---CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhH
Q psy10609 510 MFSFDVE---NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI 586 (715)
Q Consensus 510 my~~~d~---~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa 586 (715)
||.+.+. ++.++||||+|++++.+|+++++||++||+|++|+|+|||+|+++.++||+|+|||+|+|+|+||+++++
T Consensus 111 my~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~ 190 (460)
T 3uh0_A 111 MFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQV 190 (460)
T ss_dssp SCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred eEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHH
Confidence 9999874 6889999999999999999999999999999999999999999986689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHcCcE---------EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc
Q psy10609 587 GDEIVGALDFLRNVY-SIFGFT---------FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP 656 (715)
Q Consensus 587 ~~E~~~~l~~~~~il-~~LGl~---------~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp 656 (715)
++|+.++++++.++| +.|||+ |++.+++++++|+|+.+.|++++..|+++|+.+|++|.+++|+|+||||
T Consensus 191 ~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygp 270 (460)
T 3uh0_A 191 KSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGP 270 (460)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccc
Confidence 999999999999999 999997 8999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccc
Q psy10609 657 KIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELP 701 (715)
Q Consensus 657 kid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~ 701 (715)
|||+.+.|++||.|||+|+||||++|+||+++|.|+||++++|..
T Consensus 271 kid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ 315 (460)
T 3uh0_A 271 KLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIM 315 (460)
T ss_dssp EEEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEE
T ss_pred eEEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEE
Confidence 999999999999999999999999999999999999999988743
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=451.09 Aligned_cols=266 Identities=47% Similarity=0.900 Sum_probs=253.7
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~ 514 (715)
|||++||++++||++++.++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|++|||++.|.++||..+
T Consensus 1 ~dh~~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d 80 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS 80 (401)
T ss_dssp CCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEE
T ss_pred CChHHHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEe
Confidence 69999999999999999899999999999999999999999999999999999999999999999999999999999943
Q ss_pred ecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHH
Q psy10609 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594 (715)
Q Consensus 515 d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l 594 (715)
.+++.++||||+|++++.++++++.++++||+|++|+|+|||+|.++..+||+|+|||+|.|+|+||+++++++|+.+++
T Consensus 81 ~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i 160 (401)
T 1evl_A 81 SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCI 160 (401)
T ss_dssp ETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred cCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999983237999999999999999999889999999999
Q ss_pred HHHHHHHHHcCc-EEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 595 DFLRNVYSIFGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 595 ~~~~~il~~LGl-~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
+++.++|+.||| +|++.++++++++.|+.+.|+++++.++++|+.+|++|++.+++++||||++|+.+.|+.|+.|+||
T Consensus 161 ~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~g 240 (401)
T 1evl_A 161 RLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240 (401)
T ss_dssp HHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHcCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEee
Confidence 999999999999 6999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceeccc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
|+|+||++++|||++|.+.+|+++.|.
T Consensus 241 t~~~d~~l~~~~~~~y~~~~g~~~~p~ 267 (401)
T 1evl_A 241 TVQLDFSLPSRLSASYVGEDNERKVPV 267 (401)
T ss_dssp EEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred eeeeccccccccCCEEECCCCCCcCcE
Confidence 999999999999999999999987773
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=406.47 Aligned_cols=271 Identities=35% Similarity=0.590 Sum_probs=249.8
Q ss_pred HHHHHHHHHhhhhHH--HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhC
Q psy10609 424 EWEKLQEEAAKRDHR--KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG 501 (715)
Q Consensus 424 ~~~~~~ee~~~rdH~--~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG 501 (715)
++.+..+++++|||+ +||+++++| .++|+++|+|.|+.++++|++++++.+.++||++|.||.|++.++|.++|
T Consensus 11 ~~~~~~~~~~~~~h~~~~lg~~~~~~----~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg 86 (471)
T 3a32_A 11 DYAYELDITVKPDSRVPVFNREFATF----TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSG 86 (471)
T ss_dssp HHHHHTTSBCCTTSBCTTTCSBTHHH----HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTC
T ss_pred HHHHHcCccccCCchhHHHHHhcCCc----cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhcc
Confidence 445556677889998 899999887 47899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC---CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEE
Q psy10609 502 HWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR---ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH 578 (715)
Q Consensus 502 ~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~---~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~ 578 (715)
|++.|.++||+++.+++.++||||+|+++++++++++.+++ +||+|+||+|+|||+|++++++||+|+|||+|.|+|
T Consensus 87 ~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e 166 (471)
T 3a32_A 87 HIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAH 166 (471)
T ss_dssp CCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEE
T ss_pred CccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeE
Confidence 99999999999954588999999999999999999999998 999999999999999999977799999999999999
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHHH-cCc----E-EEEEEccCC-----CCCCCCHHHHHHHHHHHHHHHHhc----CCC
Q psy10609 579 IFCTVEQIGDEIVGALDFLRNVYSI-FGF----T-FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNSF----GEP 643 (715)
Q Consensus 579 if~~~eqa~~E~~~~l~~~~~il~~-LGl----~-~~v~l~~~~-----ek~~gd~e~w~~a~~~L~~~L~~~----g~~ 643 (715)
+||.++++.+++.+++.++.++|+. ||| + |++.+++++ ++++|..+.|+++++.+.+.++.. |++
T Consensus 167 ~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~ 246 (471)
T 3a32_A 167 IIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGID 246 (471)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999998889999999999999999 999 4 999999998 889999999999998887776654 888
Q ss_pred ccccCCCCccccceeeEEeec---CCCCccccccceeccCcccccCcEEEc--CCCceecc
Q psy10609 644 WTENPGDGAFYGPKIDITITD---ALKRPHQCATIQLDFQLPIRFNLAYVK--NVRAQTHE 699 (715)
Q Consensus 644 ~~~~~g~~afYgpkid~~~~D---~~gr~~q~~TiQlDf~~~~rf~l~Y~~--~dg~~~~~ 699 (715)
+...++.++||||+++..+.| ++++.+|+||+|+|++++++|+++|.+ +||.. .|
T Consensus 247 ~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~-e~ 306 (471)
T 3a32_A 247 IVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIE-EV 306 (471)
T ss_dssp EEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCS-CE
T ss_pred eEecccchhhCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccCCce-ee
Confidence 888899999999999999989 889999999999999999999999999 88887 44
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=399.06 Aligned_cols=251 Identities=18% Similarity=0.248 Sum_probs=210.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHhhhcCcceecc-----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch
Q psy10609 420 KQLKEWEKLQEEAAKRDHRKIGREQELFFFHE-----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494 (715)
Q Consensus 420 ~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~-----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~ 494 (715)
..++.|+..+. ++++||++||++++||+|++ .|+|+++|+|.|++|+++|++|+++.+.+.||++|.||.|.+.
T Consensus 160 ~~v~~~g~~~~-~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~ 238 (484)
T 3lss_A 160 TVVRTFGNTTK-RAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNR 238 (484)
T ss_dssp EEEEEESCTTC-CCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEH
T ss_pred EEEEecCCCCC-CCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccH
Confidence 34566665543 68899999999999999983 3789999999999999999999999999999999999999999
Q ss_pred hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC--C-CCCCcceeee
Q psy10609 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS--G-ALTGLTRVRR 571 (715)
Q Consensus 495 el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~--~-~l~GL~R~RE 571 (715)
++|.+||||++|.++||++.+++++++|+||+|++++.+++++++||++||+|++++|+|||+|++ | .++||+|+||
T Consensus 239 ~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~Rvrq 318 (484)
T 3lss_A 239 DVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQ 318 (484)
T ss_dssp HHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSE
T ss_pred HHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeee
Confidence 999999999999999999987778999999999999999999999999999999999999999995 3 4689999999
Q ss_pred EeEeeEEEEeCchh--HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC-----CCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy10609 572 FQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE-----KYLGELEVWNKAEKQLEASLNSFGEPW 644 (715)
Q Consensus 572 Ftq~d~~if~~~eq--a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e-----k~~gd~e~w~~a~~~L~~~L~~~g~~~ 644 (715)
|+|+|+|+||.|++ +.+++.++++++.++|+.|||+|++.....++ ....|.|.|
T Consensus 319 F~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w------------------ 380 (484)
T 3lss_A 319 FDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAW------------------ 380 (484)
T ss_dssp EEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEE------------------
T ss_pred EEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechhee------------------
Confidence 99999999999998 99999999999999999999999986533221 111123333
Q ss_pred cccCCCCccccceeeEEeecCCCCc-cccccceeccCcccccCcEEEcCC----CceecccccccccC
Q psy10609 645 TENPGDGAFYGPKIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVKNV----RAQTHELPRTLSDI 707 (715)
Q Consensus 645 ~~~~g~~afYgpkid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~d----g~~~~~~~~~~~~~ 707 (715)
.|+.+.| ++ .+||.+ .||| ++|++++|.+++ ++.+.-++||||+-
T Consensus 381 --~P~~~~~--------------~EIsS~Snc-~dyq-Arr~~iry~~~~~~~~~~~~~~~vhtlNgt 430 (484)
T 3lss_A 381 --FPASGAF--------------RELVSCSNC-TDYQ-SQSVNCRYGPNLRGTAAQNVKEYCHMLNGT 430 (484)
T ss_dssp --ETTTTEE--------------EEEEEEEEC-TTHH-HHHHTCEESSCCC----CCSCEECEEEEEE
T ss_pred --cCCCCCe--------------eEEEEecCc-cccc-ccccceEEeccccccccCCCceeeeEEecc
Confidence 2333333 22 556665 6999 999999999875 22223357999964
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=390.89 Aligned_cols=245 Identities=23% Similarity=0.368 Sum_probs=217.9
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh
Q psy10609 419 NKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ 498 (715)
Q Consensus 419 ~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~ 498 (715)
..++.+|.. +|+.++||++++..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.
T Consensus 21 ~~~f~~wy~-----------~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~ 89 (518)
T 3ial_A 21 RDTFADWFD-----------AIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLK 89 (518)
T ss_dssp TTTHHHHHH-----------HHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHT
T ss_pred cccccHHHH-----------HHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHH
Confidence 457777773 577889999984457999999999999999999999999999999999999999999996
Q ss_pred -hhCcccccCCCceEEeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeE
Q psy10609 499 -TSGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRF 572 (715)
Q Consensus 499 -~sG~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REF 572 (715)
.+||++.|.++||.+.++ ++.++||||+|++++.+|+++++||++||+|++|+|+|||+|.++. +||+|+|||
T Consensus 90 k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~-~GL~R~REF 168 (518)
T 3ial_A 90 KESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNT-KPLIRVREI 168 (518)
T ss_dssp SSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSC-BTTTBCSEE
T ss_pred hhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCC-CCCceeeEE
Confidence 699999999999999875 4789999999999999999999999999999999999999997765 899999999
Q ss_pred eEeeEEEE-eCchhHHHHHHHHHHHHHHHH-HHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCC
Q psy10609 573 QQDDAHIF-CTVEQIGDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGD 650 (715)
Q Consensus 573 tq~d~~if-~~~eqa~~E~~~~l~~~~~il-~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~ 650 (715)
+|+|+|+| |+++++++|+..+++++.++| +.|||+|++.... + |+ .+.
T Consensus 169 ~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~--~--------~e--------------------~~~ 218 (518)
T 3ial_A 169 HWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRV--C--------WD--------------------RFP 218 (518)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEEC--G--------GG--------------------CCT
T ss_pred EEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecC--h--------hh--------------------ccC
Confidence 99999999 567899999999999999999 9999998765421 1 21 234
Q ss_pred CccccceeeEEeecCCCCccccccce-eccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 651 GAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 651 ~afYgpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
||+|+++||+.+.| ||.||+||+| ||+++|+||+|+|.|+||++++| -++..|+.
T Consensus 219 gA~yt~~iE~~~pd--gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~-h~~~~G~~ 274 (518)
T 3ial_A 219 GADYSEVSDVVMPC--GRVLQTAGIHNLGQRFSSTFDILYANKANESVHP-YLTCAGIS 274 (518)
T ss_dssp TCSEEEEEEEECTT--SCEEEEEEEEEEETHHHHHTTCCEECTTCCEECC-EEEEEEEE
T ss_pred CCccceEEEEEcCC--CCEEEEeceecccchhhhhcCcEEECCCCCEeee-EEeccchH
Confidence 78999999998877 8999999999 89999999999999999999887 34555543
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=397.13 Aligned_cols=248 Identities=16% Similarity=0.287 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh
Q psy10609 421 QLKEWEKLQEEAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 496 (715)
Q Consensus 421 ~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el 496 (715)
+++.|+.++ .++++||++||++++||||++ +|+|+++|+|.|++|+++|++|+++.+.+.||++|.||.|.+.++
T Consensus 155 ~vr~~g~~~-~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el 233 (522)
T 3vbb_A 155 VERIWGDCT-VRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEV 233 (522)
T ss_dssp EEEEESCSS-CCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHH
T ss_pred EEEEeCCCC-CCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHH
Confidence 355555443 246789999999999999987 279999999999999999999999999999999999999999999
Q ss_pred hhhhCcccccCCCceEEeec---------CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCC
Q psy10609 497 WQTSGHWAHYSENMFSFDVE---------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALT 564 (715)
Q Consensus 497 ~~~sG~~~~~~~emy~~~d~---------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~ 564 (715)
|.+||||++|.++||.+.++ +++++|+||+|++++.+++++++||++||+|++++|+|||+|+++ .++
T Consensus 234 ~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~Grdtr 313 (522)
T 3vbb_A 234 MQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTR 313 (522)
T ss_dssp HHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CC
T ss_pred HhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCC
Confidence 99999999999999999764 468999999999999999999999999999999999999999973 479
Q ss_pred CcceeeeEeEeeEEEEeCchh--HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC-----CCCCCHHHHHHHHHHHHHHH
Q psy10609 565 GLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE-----KYLGELEVWNKAEKQLEASL 637 (715)
Q Consensus 565 GL~R~REFtq~d~~if~~~eq--a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e-----k~~gd~e~w~~a~~~L~~~L 637 (715)
||+|+|||+|+|+|+||.|++ +++++.++++++.++|+.|||+|++.....++ ....|.|.|
T Consensus 314 GL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w----------- 382 (522)
T 3vbb_A 314 GIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAW----------- 382 (522)
T ss_dssp CSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEE-----------
T ss_pred CcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEe-----------
Confidence 999999999999999999987 99999999999999999999999886533221 111233333
Q ss_pred HhcCCCccccCCCCccccceeeEEeecCCCCc-cccccceeccCcccccCcEEEcC---CCceecccccccccC
Q psy10609 638 NSFGEPWTENPGDGAFYGPKIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVKN---VRAQTHELPRTLSDI 707 (715)
Q Consensus 638 ~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~---dg~~~~~~~~~~~~~ 707 (715)
.|+.+.| ++ .+||.+ .||| ++|++|+|.++ +|+.+ +++|||+-
T Consensus 383 ---------~P~~~~y--------------~EIsScSnc-~Dyq-Arr~~iry~~~~~~~~k~~--~vhtlNgs 429 (522)
T 3vbb_A 383 ---------FPGSGAF--------------RELVSCSNC-TDYQ-ARRLRIRYGQTKKMMDKVE--FVHMLNAT 429 (522)
T ss_dssp ---------ETTTTEE--------------EEEEEEEEC-TTHH-HHHHTCEESCC---CCCCC--BCEEEEEE
T ss_pred ---------cCCCCce--------------eEEEEecCC-CCCc-cceeeeEEccccccCCCee--eceEEecc
Confidence 2333333 23 456666 7999 99999999986 55553 46999864
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=393.99 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=214.3
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHhhhcCcceeccC----CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch
Q psy10609 420 KQLKEWEKLQE-EAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494 (715)
Q Consensus 420 ~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~----~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~ 494 (715)
.+++.|+.+++ .++++||++||+++|||||+.. |+|+++|+|.|++++++|++++++.+.+.||++|.||.|.+.
T Consensus 170 ~~v~~~g~~~~~~f~~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~ 249 (501)
T 1wle_A 170 RVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRG 249 (501)
T ss_dssp EEEEEESCCCCCSSCCCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred eEEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 34556665444 4678999999999999999863 699999999999999999999999999999999999999999
Q ss_pred hhhhhhCcccccCC-CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC--CCCCcceee
Q psy10609 495 KLWQTSGHWAHYSE-NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG--ALTGLTRVR 570 (715)
Q Consensus 495 el~~~sG~~~~~~~-emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~--~l~GL~R~R 570 (715)
++|.+||||+.|.+ +||++.++ +++++|+||+|++++.++++++.||++||+|++++|+|||+|++. .++||+|+|
T Consensus 250 ~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~Rvh 329 (501)
T 1wle_A 250 VVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVH 329 (501)
T ss_dssp HHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCS
T ss_pred HHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeee
Confidence 99999999999998 99999775 578999999999999999999999999999999999999999982 268999999
Q ss_pred eEeEeeEEEEeCc--hhHHHHHHHHHHHHHHHHHHcCcEEEEE-EccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy10609 571 RFQQDDAHIFCTV--EQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRP----EKYLGELEVWNKAEKQLEASLNSFGEP 643 (715)
Q Consensus 571 EFtq~d~~if~~~--eqa~~E~~~~l~~~~~il~~LGl~~~v~-l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~ 643 (715)
||+|+|+|+||.+ +++.+++.++++++.++|+.|||+|++. ++++. ....+|.|+|
T Consensus 330 qF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w----------------- 392 (501)
T 1wle_A 330 HFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAW----------------- 392 (501)
T ss_dssp EEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEE-----------------
T ss_pred eeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhc-----------------
Confidence 9999999999999 5999999999999999999999999875 44431 2223344555
Q ss_pred ccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 644 WTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 644 ~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
.|+++.| +..++|+.+ .||| |+||+++|.++||+.++ ++|||+.
T Consensus 393 ---~p~~~~~-------------~Ei~s~sn~-~Dfq-arR~~iry~~~~gk~~~--vHtlngS 436 (501)
T 1wle_A 393 ---MPGRGRF-------------GEVTSASNC-TDFQ-SRRLHIMFQTEAGELQF--AHTVNAT 436 (501)
T ss_dssp ---ETTTTEE-------------EEEEEEEEC-TTHH-HHHHTCEEECSSSCEEE--CEEEEEE
T ss_pred ---ccccccc-------------eeEEecccc-ccch-hhhcCcEEECCCCCEEE--EEEECCc
Confidence 3444444 112677755 8998 99999999999988764 5799874
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=391.30 Aligned_cols=250 Identities=17% Similarity=0.355 Sum_probs=214.3
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHhhhcCcceeccC----CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch
Q psy10609 420 KQLKEWEKLQE-EAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494 (715)
Q Consensus 420 ~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~----~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~ 494 (715)
..++.|+.++. .++++||++||++++||+|++. |+|+++|+|.|++++++|++++++.+.++||++|.||.|++.
T Consensus 123 ~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~ 202 (425)
T 2dq3_A 123 VEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKP 202 (425)
T ss_dssp EEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred EEEEEeCCCCCCCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 44555555433 4678999999999999999874 799999999999999999999999999999999999999999
Q ss_pred hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeee
Q psy10609 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRR 571 (715)
Q Consensus 495 el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~RE 571 (715)
++|.+|||++.|.++||++. ++.++||||+|++++.+|++++.++++||+|++++|+|||+|+++ .++||+|+||
T Consensus 203 ~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~re 280 (425)
T 2dq3_A 203 EILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQ 280 (425)
T ss_dssp HHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSE
T ss_pred HHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccc
Confidence 99999999999999999885 468999999999999999999999999999999999999999976 3689999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEE-EEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL-RLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTE 646 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v-~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~ 646 (715)
|+|+|+|+||+++++++++.+++.++.++|+.|||+|++ .++++. ....+|.|.|.
T Consensus 281 F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~------------------- 341 (425)
T 2dq3_A 281 FDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWF------------------- 341 (425)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEE-------------------
T ss_pred eEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCcCCChHHhccchhhcc-------------------
Confidence 999999999999999999999999999999999999884 456542 23334455552
Q ss_pred cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 647 NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 647 ~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
|+++.| +..++|||+ .||| |+||+++|.++||.+.+ ++||++|.
T Consensus 342 -p~~~~~-------------~ei~s~sn~-~Dfq-a~r~~i~y~~~~~~k~~-~vHtl~Gs 385 (425)
T 2dq3_A 342 -PSQNKY-------------REISSCSNC-EDFQ-ARRMNTRFKDSKTGKNR-FVHTLNGS 385 (425)
T ss_dssp -GGGTEE-------------EEEEEEEEC-TTHH-HHHHTEEEECTTTCSEE-ECEEEEEE
T ss_pred -chhHHH-------------HHHHHcCCc-cccC-cccCCeEEECCCCCeeE-EEEEEecc
Confidence 222233 123789999 9999 99999999999965444 47899875
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=389.72 Aligned_cols=239 Identities=13% Similarity=0.157 Sum_probs=207.2
Q ss_pred HhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC
Q psy10609 432 AAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 507 (715)
Q Consensus 432 ~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~ 507 (715)
++++||++||+++|||+|++ .|+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+||||+.|.
T Consensus 157 ~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 236 (455)
T 2dq0_A 157 WKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236 (455)
T ss_dssp SCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH
T ss_pred CccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh
Confidence 67899999999999999985 47999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeEeEeeEEEEeCch
Q psy10609 508 ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVE 584 (715)
Q Consensus 508 ~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~~~e 584 (715)
++||.+.+ ++++||||+|++++.+|++++.|+++||+|++++|+|||+|+++ .++||+|+|||+|+|+|+||+|+
T Consensus 237 ~emy~~~d--~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe 314 (455)
T 2dq0_A 237 DVIYKVED--EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE 314 (455)
T ss_dssp HTCCBBTT--SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT
T ss_pred HhhCeecC--CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH
Confidence 99999864 68999999999999999999999999999999999999999984 47899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEee-
Q psy10609 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT- 663 (715)
Q Consensus 585 qa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~- 663 (715)
++.+++.++++++.++|+.|||+|++...+.++...+... +.|+.+.
T Consensus 315 ~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~--------------------------------~~diE~w~ 362 (455)
T 2dq0_A 315 ESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAK--------------------------------KYDIEAWM 362 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSE--------------------------------EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEECCCccccChhhc--------------------------------eeeeeeec
Confidence 9999999999999999999999999877655443322111 2233322
Q ss_pred cCCCCccccccce--eccCcccccCcEEEcC-CCceecccccccccC
Q psy10609 664 DALKRPHQCATIQ--LDFQLPIRFNLAYVKN-VRAQTHELPRTLSDI 707 (715)
Q Consensus 664 D~~gr~~q~~TiQ--lDf~~~~rf~l~Y~~~-dg~~~~~~~~~~~~~ 707 (715)
++.|+.+++++++ .||| |+||+|+|.++ ||+.+ ++||+|+.
T Consensus 363 p~~~~~~ei~s~s~c~Dfq-arR~~iry~~~~~g~~~--~vHtlngs 406 (455)
T 2dq0_A 363 PGQGKFREVVSASNCTDWQ-ARRLNIRFRDRTDEKPR--YVHTLNST 406 (455)
T ss_dssp TTTTEEEEEEEEEECTTTT-HHHHTEEEESSTTSCCE--ECEEEEEE
T ss_pred CcCCcccEEEeeccchhhH-hhccCcEEecCCCCcEE--EEEEEech
Confidence 2345556666665 4888 99999999998 88775 46798765
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=395.32 Aligned_cols=251 Identities=20% Similarity=0.303 Sum_probs=210.8
Q ss_pred ChhhhHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCccc
Q psy10609 418 DNKQLKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 492 (715)
Q Consensus 418 ~~~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~ 492 (715)
++..++.|+.++. .++++||++||+++|||| ++ .|+|+++|+|.|++++++|++++++.+.+.||++|.||.|.
T Consensus 225 ~n~~~~~~g~~~~~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv 303 (536)
T 3err_A 225 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYA 303 (536)
T ss_dssp GCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEE
T ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccc
Confidence 4555677776555 568899999999999999 76 27999999999999999999999999999999999999999
Q ss_pred chhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC--C-CCCCccee
Q psy10609 493 NVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS--G-ALTGLTRV 569 (715)
Q Consensus 493 ~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~--~-~l~GL~R~ 569 (715)
+.++|.+||||++|.++||++.+ ++++|+||+|++++.+++++++||++||+|++++|+|||+|++ | .++||+|+
T Consensus 304 ~~~l~~~sG~~~~f~e~mf~~~~--~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~Rv 381 (536)
T 3err_A 304 REKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV 381 (536)
T ss_dssp EHHHHHHHTCTTTTGGGCCEETT--TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSC
T ss_pred cHHHHHhcCCcccChhhceEecC--CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceee
Confidence 99999999999999999999865 5899999999999999999999999999999999999999995 3 36899999
Q ss_pred eeEeEeeEEEEeCch--hHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccc
Q psy10609 570 RRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTEN 647 (715)
Q Consensus 570 REFtq~d~~if~~~e--qa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~ 647 (715)
|||+|+|+|+||.|+ ++++++.++++++.++|+.|||+|++.....++
T Consensus 382 rqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgd------------------------------ 431 (536)
T 3err_A 382 HQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGD------------------------------ 431 (536)
T ss_dssp SEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTT------------------------------
T ss_pred eeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcc------------------------------
Confidence 999999999999998 999999999999999999999999986543321
Q ss_pred CCCCccccceeeEEeecCC-CC--c-cccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 648 PGDGAFYGPKIDITITDAL-KR--P-HQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 648 ~g~~afYgpkid~~~~D~~-gr--~-~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
.|.++. -+.|+.+.-.. ++ + .+|+.+ .||| ++|++++|.+++|+.++ ++|||+-
T Consensus 432 lg~~a~--~~yDiE~w~p~~~~~~Ei~s~sn~-~dyq-arr~~iry~~~~~k~~~--vhtlngs 489 (536)
T 3err_A 432 MGPGKW--RQVDIEVYLPSEGRYRETHSCSAL-LDWQ-ARRANLRYRDPEGRVRY--AYTLNNT 489 (536)
T ss_dssp SCTTCS--EEEEEEEEEGGGTEEEEEEEEEEE-ETHH-HHHHTCEEECTTSCEEE--CEEEEEE
T ss_pred cCCChh--heeeeeEecCCCCCeEEEEEecCc-cChh-hcccCeEEECCCCCeEe--eeEEecc
Confidence 111111 12233222211 22 2 445554 6999 99999999999988765 5899965
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-43 Score=386.40 Aligned_cols=236 Identities=19% Similarity=0.320 Sum_probs=205.2
Q ss_pred HhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC
Q psy10609 432 AAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 507 (715)
Q Consensus 432 ~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~ 507 (715)
++++||++||+++|||+ ++ .|+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+|||++.|.
T Consensus 131 ~~~~~H~~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 209 (421)
T 1ses_A 131 FPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYR 209 (421)
T ss_dssp SCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTG
T ss_pred CCCCCHHHHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCc
Confidence 67899999999999999 76 37999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCC---CCCcceeeeEeEeeEEEEeCc-
Q psy10609 508 ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCTV- 583 (715)
Q Consensus 508 ~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~---l~GL~R~REFtq~d~~if~~~- 583 (715)
++||.+.+ ++++|+||+|++++.++++++.++++||+|++++|+|||+|+++. .+||+|+|||+|+|+|+||.|
T Consensus 210 ~emy~~~d--~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~ 287 (421)
T 1ses_A 210 DQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAS 287 (421)
T ss_dssp GGSCBBTT--SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSC
T ss_pred hhcEEEcC--CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCC
Confidence 99999864 689999999999999999999999999999999999999998532 489999999999999999999
Q ss_pred -hhHHHHHHHHHHHHHHHHHHcCcEEEE-EEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccce
Q psy10609 584 -EQIGDEIVGALDFLRNVYSIFGFTFNL-RLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPK 657 (715)
Q Consensus 584 -eqa~~E~~~~l~~~~~il~~LGl~~~v-~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpk 657 (715)
+++++++.++++++.++|+.|||+|++ .++++. +...+|.|+| .|+.+.|
T Consensus 288 ~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w--------------------~p~~~~~---- 343 (421)
T 1ses_A 288 LEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVY--------------------LPSEGRY---- 343 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEE--------------------ETTTTEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCccCCchhhhcccHhhe--------------------echhccc----
Confidence 899999999999999999999999886 444321 2233344444 2333333
Q ss_pred eeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 658 IDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 658 id~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
...++|+++ .||| |+||+++|.+++|+.++ ++|+|+-
T Consensus 344 ---------~ei~s~s~~-~Dfq-arr~~i~y~~~~~~~~~--vhtlngs 380 (421)
T 1ses_A 344 ---------RETHSCSAL-LDWQ-ARRANLRYRDPEGRVRY--AYTLNNT 380 (421)
T ss_dssp ---------EEEEEEEEE-ETHH-HHHHTCEEECTTSCEEE--CEEEEEE
T ss_pred ---------hheeecccc-chhh-hhhhcCEeECCCCCEEE--EEecCCc
Confidence 123899999 9999 99999999999987654 4688864
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=383.94 Aligned_cols=239 Identities=15% Similarity=0.247 Sum_probs=201.4
Q ss_pred HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccccc
Q psy10609 431 EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHY 506 (715)
Q Consensus 431 e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~ 506 (715)
.++++||++||++++||+|++ .|+|+++|+|.|++|+++|++++++.+.+.||++|.||.|.+.++|.+||||++|
T Consensus 148 ~~~~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f 227 (485)
T 3qne_A 148 APAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQF 227 (485)
T ss_dssp CBCCSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHH
T ss_pred CCCccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCcccc
Confidence 457899999999999999985 3789999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEeecCceEEEecCChHHHHHHHHhhhcc--cCCCCeEEEEeccCcccCCCC---CCCCcceeeeEeEeeEEEEe
Q psy10609 507 SENMFSFDVENETYALKPMNCPGHCLIFDHRVRS--WRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFC 581 (715)
Q Consensus 507 ~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s--~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~ 581 (715)
.++||.+.+.+++++|+||+|.+++.++++++.+ |++||+|++++|+|||+|+++ .++||+|+|||+|+|+|+||
T Consensus 228 ~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~ 307 (485)
T 3qne_A 228 DEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLT 307 (485)
T ss_dssp TTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEE
T ss_pred ccceEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEe
Confidence 9999999886778999999999999999998887 999999999999999999986 47899999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCC-----CCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc
Q psy10609 582 TVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEK-----YLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP 656 (715)
Q Consensus 582 ~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek-----~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp 656 (715)
+++++++++.+|++++.++|+.|||+|++.....++- ...|.|.| .|+.+.|
T Consensus 308 ~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w--------------------~P~~~~~--- 364 (485)
T 3qne_A 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAW--------------------FPFQQEY--- 364 (485)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEE--------------------ETTTTEE---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEe--------------------ccCCCce---
Confidence 9999999999999999999999999999865432210 01122333 2333333
Q ss_pred eeeEEeecCCCCc-cccccceeccCcccccCcEEEcC---CCceecccccccccC
Q psy10609 657 KIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVKN---VRAQTHELPRTLSDI 707 (715)
Q Consensus 657 kid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~---dg~~~~~~~~~~~~~ 707 (715)
++ .+||.+ .||| ++|++|+|.++ +|+.+ +++|||+-
T Consensus 365 -----------~Eiss~Snc-~dyq-Arr~~iry~~~~~~~~~~~--~vhtlNgt 404 (485)
T 3qne_A 365 -----------KELVSCSNC-TDYQ-SRNLEIRCGIKQQNQQEKK--YVHCLNST 404 (485)
T ss_dssp -----------EEEEEEEEC-TTHH-HHHTTCEECC------CCC--BCEEEEEE
T ss_pred -----------eEEEEecCC-cCcc-ccccceEEecccccCCCce--eeEEEecc
Confidence 22 556655 6999 99999999987 45443 46999864
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=377.26 Aligned_cols=243 Identities=20% Similarity=0.332 Sum_probs=214.7
Q ss_pred cccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCccc
Q psy10609 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 492 (715)
Q Consensus 413 G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~ 492 (715)
|...+...++.+|. .+|+++++|+++. .++|+++|+|.|+.++++|++++++.+.++||++|.||.|+
T Consensus 22 ~~~~~~~~~f~~wy-----------~~l~~~~~lid~~-~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~ 89 (519)
T 4hvc_A 22 GLEAKKEENLADWY-----------SQVITKSEMIEYH-DISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFV 89 (519)
T ss_dssp -CCSCTTTCHHHHH-----------HHHHHHTTCEEEC-SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEE
T ss_pred cCccCcccCchHHH-----------HHHHHHCCCeEec-CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccc
Confidence 55555566777776 4678899999983 36899999999999999999999999999999999999999
Q ss_pred chhhhhh-hCcccccCCCceEEeecC-----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCc
Q psy10609 493 NVKLWQT-SGHWAHYSENMFSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566 (715)
Q Consensus 493 ~~el~~~-sG~~~~~~~emy~~~d~~-----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL 566 (715)
+.++|.+ +||++.|.++||.+.+.+ +.++||||+|++++.+|+++++||++||+|++|+|+|||+|.++. +||
T Consensus 90 ~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~-~Gl 168 (519)
T 4hvc_A 90 SQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHP-QPF 168 (519)
T ss_dssp EHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCC-BTT
T ss_pred cHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCC-CCC
Confidence 9999996 899999999999997653 369999999999999999999999999999999999999997776 899
Q ss_pred ceeeeEeEeeEEE-EeCchhHHHHHHHHHHHHHHHHHHc-CcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy10609 567 TRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644 (715)
Q Consensus 567 ~R~REFtq~d~~i-f~~~eqa~~E~~~~l~~~~~il~~L-Gl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~ 644 (715)
+|+|||+|+|+|+ ||+++++++|+..+++++.++|+.| ||||++..++++++++|+.+.|+
T Consensus 169 ~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~----------------- 231 (519)
T 4hvc_A 169 LRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTT----------------- 231 (519)
T ss_dssp TBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEE-----------------
T ss_pred cceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhhee-----------------
Confidence 9999999999998 8888999999999999999999997 99998888888888888776541
Q ss_pred cccCCCCccccceeeEEeecCCCCccccccc-eeccCcccccCcEEEcC--CCceecc
Q psy10609 645 TENPGDGAFYGPKIDITITDALKRPHQCATI-QLDFQLPIRFNLAYVKN--VRAQTHE 699 (715)
Q Consensus 645 ~~~~g~~afYgpkid~~~~D~~gr~~q~~Ti-QlDf~~~~rf~l~Y~~~--dg~~~~~ 699 (715)
+| .+.|+.||.||+||+ |||+++|+||+++|.|+ +|+++++
T Consensus 232 -------------iE-a~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~v 275 (519)
T 4hvc_A 232 -------------IE-AFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFA 275 (519)
T ss_dssp -------------EE-EEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEEC
T ss_pred -------------ee-eeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEE
Confidence 22 134789999999999 79999999999999997 5777654
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=366.32 Aligned_cols=242 Identities=17% Similarity=0.241 Sum_probs=208.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hC
Q psy10609 423 KEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SG 501 (715)
Q Consensus 423 ~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG 501 (715)
+.|+++.+++. ++|.+|+++++|++++...+|+++|+|.|++++++|++++++.+.+ ||++|.||.|++.++|.+ +|
T Consensus 31 ~~~~~~~~~f~-~~~~~l~~~~glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG 108 (501)
T 1nj1_A 31 RYHGEKMTEFS-EWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAI 108 (501)
T ss_dssp --------CHH-HHHHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHH
T ss_pred ccccCCCCCcc-HhHHHHHHHCCCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccC
Confidence 77888776665 9999999999999996667999999999999999999999999999 999999999999999987 99
Q ss_pred cccccCCCceEEeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEe-Ee
Q psy10609 502 HWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ-QD 575 (715)
Q Consensus 502 ~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFt-q~ 575 (715)
|++.|.++||.+.++ ++.++||||+|++++.+|++++.|+++||+|++|+|+|||+|+++ ++||+|+|||+ |+
T Consensus 109 ~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~REF~~q~ 187 (501)
T 1nj1_A 109 HVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFK 187 (501)
T ss_dssp HHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEE
T ss_pred CcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCC-CCCCceeEEEeeee
Confidence 999999999999875 578999999999999999999999999999999999999999993 26999999999 99
Q ss_pred eEEEE-eCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccc
Q psy10609 576 DAHIF-CTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFY 654 (715)
Q Consensus 576 d~~if-~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afY 654 (715)
|+|+| ++++++++|+.++++++.++|+.|||+|++.++++++++.|....
T Consensus 188 e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~----------------------------- 238 (501)
T 1nj1_A 188 EAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYT----------------------------- 238 (501)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEE-----------------------------
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCCcccc-----------------------------
Confidence 99975 566899999999999999999999999998887655544433222
Q ss_pred cceeeEEeecCCCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 655 GPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 655 gpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
..||+.+.| |+.+++||++ ++.++++||+++|.+++|+.++|
T Consensus 239 -~die~~l~~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~ 281 (501)
T 1nj1_A 239 -VAFDTLMPD--GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYV 281 (501)
T ss_dssp -EEEEEECTT--SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEEC
T ss_pred -eEEEEEcCC--CCEEEEEEEEeccccchhhcCeEEECCCCCEEee
Confidence 236666665 8899999998 89889999999999999987665
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=358.11 Aligned_cols=231 Identities=18% Similarity=0.273 Sum_probs=200.8
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFS 512 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~ 512 (715)
...|.+|+++.+|+++.+ ++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||.
T Consensus 15 ~~~~~~l~~~~~li~~~~-~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~ 93 (477)
T 1hc7_A 15 SEWYLEVIQKAELADYGP-VRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAV 93 (477)
T ss_dssp HHHHHHHHHHTTSEEECS-STTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEE
T ss_pred hHHHHHHHHHCCCeeecC-CCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEE
Confidence 567999999999998865 58999999999999999999999999999999999999999999987 9999999999999
Q ss_pred Eeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEe-CchhH
Q psy10609 513 FDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC-TVEQI 586 (715)
Q Consensus 513 ~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~-~~eqa 586 (715)
+.++ ++.++||||+|++++.+|++++.||++||+|++|+|+|||+|.++ +||+|+|||+|+|+|+|+ +++++
T Consensus 94 ~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~--rGl~R~REF~q~d~~~~~~~~~~a 171 (477)
T 1hc7_A 94 VTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT--RPFLRTSEFLWQEGHTAHATREEA 171 (477)
T ss_dssp EEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC--BTTTBCSEEEEEEEEEEESSHHHH
T ss_pred EECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCC--CCcceeEEEEEccEEEEeCCHHHH
Confidence 9876 578999999999999999999999999999999999999999987 499999999999999955 56799
Q ss_pred HHHHHHHHHHHHHHH-HHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC
Q psy10609 587 GDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665 (715)
Q Consensus 587 ~~E~~~~l~~~~~il-~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~ 665 (715)
++|+..+++++.++| +.|||+|++.++++.+++.|....| .+|+.+.|
T Consensus 172 d~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~------------------------------~ie~~~~d- 220 (477)
T 1hc7_A 172 EEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTT------------------------------TIEALMKD- 220 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEE------------------------------EEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccce------------------------------EEEEEcCC-
Confidence 999999999999999 8999999988887766665543322 35555544
Q ss_pred CCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 666 LKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 666 ~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
||.+|+||+| +++++|++|+++|.+.+|+.++|
T Consensus 221 -gr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~ 254 (477)
T 1hc7_A 221 -GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYV 254 (477)
T ss_dssp -SCEEEEEEEEEEETHHHHHTTCEEECTTSCEEEC
T ss_pred -CcEEEEeeeEEcccccccccCeEEECCCCCEEee
Confidence 7889999999 99999999999999999997665
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=352.80 Aligned_cols=233 Identities=17% Similarity=0.252 Sum_probs=207.2
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFS 512 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~ 512 (715)
.+.|.+|+.+.+|++++...+|+++|+|.|+.++++|++++++.+.++||++|.||.|++.++|.+ +||++.|.++||.
T Consensus 8 ~~~~~~l~~~~~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~ 87 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW 87 (459)
T ss_dssp HHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEE
T ss_pred cHhHHHHHHhCCCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEE
Confidence 567999999999999865579999999999999999999999999999999999999999999975 9999999999999
Q ss_pred Eeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEe-EeeEEEEeC-chh
Q psy10609 513 FDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ-QDDAHIFCT-VEQ 585 (715)
Q Consensus 513 ~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFt-q~d~~if~~-~eq 585 (715)
+.++ ++.++||||+|++++.+|++++.|+++||+|++|+|+|||+|+++ .+||+|+|||+ |+|+|+|+. +++
T Consensus 88 ~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~~~~~~ 166 (459)
T 1nj8_A 88 VTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEE 166 (459)
T ss_dssp EEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHH
T ss_pred EeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEECCHHH
Confidence 9886 578999999999999999999999999999999999999999993 26999999999 999998655 579
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC
Q psy10609 586 IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665 (715)
Q Consensus 586 a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~ 665 (715)
+++|+.+++.++.++|+.|||+|++.++++.+++.|... ...||+.+.|
T Consensus 167 a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~------------------------------~~~ie~~~~d- 215 (459)
T 1nj8_A 167 AENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEY------------------------------TMAFDTIFPD- 215 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSE------------------------------EEEEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEeecCchhhcCCccc------------------------------ceeEEEEcCC-
Confidence 999999999999999999999988887765555433322 2235555544
Q ss_pred CCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 666 LKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 666 ~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+.+++||+| |++++|++|+++|.|++|+.+++
T Consensus 216 -g~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v 249 (459)
T 1nj8_A 216 -GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYA 249 (459)
T ss_dssp -SCEEEEEEEEEEETHHHHHTTCEEECTTSSEEEC
T ss_pred -CcEEEEEEEeecccccccccCeEEECCCCCEeee
Confidence 8999999998 99999999999999999987665
|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=317.77 Aligned_cols=219 Identities=32% Similarity=0.576 Sum_probs=190.8
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcCc
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGV 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (715)
++|++|||+++.++. ++|+.|+|+.++.++++.+++|+|||+++||++||+.+|.|+++
T Consensus 2 i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~i-------------------- 60 (224)
T 1tke_A 2 PVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII-------------------- 60 (224)
T ss_dssp CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEE--------------------
T ss_pred eEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEE--------------------
Confidence 689999999999888 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHH
Q psy10609 118 LWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDK 196 (715)
Q Consensus 118 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (715)
++++++|.++||||++|||++|++++||+ .+++||++++|||||+..+..
T Consensus 61 ------------------t~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~----------- 111 (224)
T 1tke_A 61 ------------------TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT----------- 111 (224)
T ss_dssp ------------------CTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-----------
T ss_pred ------------------ecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCC-----------
Confidence 99999999999999999999999999986 789999999999999976533
Q ss_pred HHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 197 LKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 197 l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
++.
T Consensus 112 -----------------------------------------------------------------------------~t~ 114 (224)
T 1tke_A 112 -----------------------------------------------------------------------------LTQ 114 (224)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred -----------------------------------------------------------------------------CCH
Confidence 566
Q ss_pred CChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHHhh-ccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 277 LDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKE-KVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 277 ~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI~e-~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
+++..++..|.++|+++.|+.+..++.++|.++|+. ++++.++++. ......+++|+||+|+|+|.|||+++|+...
T Consensus 115 edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~ 194 (224)
T 1tke_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCH 194 (224)
T ss_dssp HHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCEEEECCCcCCCcCcccc
Confidence 788889999999999999999999999999999975 5577888875 3234567778888888888888888888777
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+|+|.+ +.+.||+|+.++.+|||+||.+||
T Consensus 195 ~fkl~~----------------------------------~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 195 HFKLMK----------------------------------TAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp CEEEEE----------------------------------EEEEEGGGCTTSCEEEEEEEEECC
T ss_pred eEEEEE----------------------------------ecceeEcCCCCCceeEEEEEeccC
Confidence 777776 344578888888888888888775
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=350.68 Aligned_cols=182 Identities=19% Similarity=0.370 Sum_probs=171.2
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+++++++||+.|++. ++++ +.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.|.+
T Consensus 15 ~~~~~~~~h~~l~~~-g~~~--~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~ 91 (572)
T 2j3l_A 15 PNDAEVLSHQILLRA-GYIR--QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGP 91 (572)
T ss_dssp CTTCCSHHHHHHHHT-TSEE--EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCT
T ss_pred CcccCCcCHHHHHhC-CCcc--ccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccch
Confidence 568899999999997 5544 4579999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.+.+. ++.++||||+|++++.++++++.||++||+|++|+|+|||+|++|+ +||+|+|||+|+|+|+||.+ +++
T Consensus 92 ~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~-~Gl~R~ReF~q~d~~~f~~~~~~~ 170 (572)
T 2j3l_A 92 NLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSR-SGLLRGREFIMKDGYSFHADEASL 170 (572)
T ss_dssp TSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCC-TGGGSCSEEEEEEEEEEESSHHHH
T ss_pred heEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcc-cCccccceeEEeeeEEEcCCHHHH
Confidence 99999875 7899999999999999999999999999999999999999999974 89999999999999999995 699
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEcc
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLST 614 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~ 614 (715)
++|+..+++++.++|+.|||+|++.+++
T Consensus 171 ~~e~~~~~~~~~~~~~~lgl~~~~~~~~ 198 (572)
T 2j3l_A 171 DQSYRDYEKAYSRIFERCGLEFRAIIGD 198 (572)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 9999999999999999999999998865
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=346.15 Aligned_cols=284 Identities=17% Similarity=0.162 Sum_probs=223.0
Q ss_pred CCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHH
Q psy10609 401 GKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRK 480 (715)
Q Consensus 401 G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~ 480 (715)
|......++|.+-.+.|+-.+ .+++++.++|+.|+++ ++ +.+.++|+++|+|.|++++++|++++++.+.+
T Consensus 13 ~~~~~~~~~~~s~~~~~t~~~------~~~~a~~~~h~ll~r~-g~--i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~ 83 (458)
T 2i4l_A 13 GLVPRGSHMRLSRFFLPILKE------NPKEAEIVSHRLMLRA-GM--LRQEAAGIYAWLPLGHRVLKKIEQIVREEQNR 83 (458)
T ss_dssp -----CCEEEGGGSCCCCCSS------CCTTCCSHHHHHHHHT-TC--EEEEETTEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccccccchhhhhhhhhcc------ChhhcCcchHHHHhhc-CC--eeccCCcceEECCCHHHHHHHHHHHHHHHHHH
Confidence 557777788888888886543 3678899999999998 44 44557899999999999999999999999999
Q ss_pred cCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCC
Q psy10609 481 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNEL 559 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~ 559 (715)
+||++|.||+|++.++|+++|||+.+.++||++.+. ++.++||||+|+.++.+++..+.+|++||+|+||+|+|||+|.
T Consensus 84 ~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~ 163 (458)
T 2i4l_A 84 AGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQ 163 (458)
T ss_dssp TTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCS
T ss_pred cCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCC
Confidence 999999999999999999999999999999999886 7899999999999999999999999999999999999999996
Q ss_pred CCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC------------CCCCCH---
Q psy10609 560 SGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE------------KYLGEL--- 623 (715)
Q Consensus 560 ~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e------------k~~gd~--- 623 (715)
+++ +||+|+|||+|.|+|+||.+ +++++|+..+++++.++|++|||+|++.+++++. ...|.+
T Consensus 164 ~p~-~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~ 242 (458)
T 2i4l_A 164 RPR-FGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVY 242 (458)
T ss_dssp SCB-TGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEE
T ss_pred CCC-CCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEE
Confidence 665 79999999999999999965 6999999999999999999999999998876631 012221
Q ss_pred -------HHHHHHHH----HHHHHHHhcC-CC-ccc--cCCCCc---cccceeeEEeecCCCCccccccceeccCccccc
Q psy10609 624 -------EVWNKAEK----QLEASLNSFG-EP-WTE--NPGDGA---FYGPKIDITITDALKRPHQCATIQLDFQLPIRF 685 (715)
Q Consensus 624 -------e~w~~a~~----~L~~~L~~~g-~~-~~~--~~g~~a---fYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf 685 (715)
+.|+.++. .++++++..+ +. ... ..|+.+ +|++++++.--...|..+++||. .|++|
T Consensus 243 ~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~-----~s~~~ 317 (458)
T 2i4l_A 243 IDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTK-----YSDSM 317 (458)
T ss_dssp EEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETH-----HHHHT
T ss_pred ecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEeccc-----ccccC
Confidence 11211110 1223332221 10 000 234443 78888876554456777777654 69999
Q ss_pred CcEEEcCCCceecc
Q psy10609 686 NLAYVKNVRAQTHE 699 (715)
Q Consensus 686 ~l~Y~~~dg~~~~~ 699 (715)
+.+|.+.+|+...|
T Consensus 318 g~ry~~~~G~~~p~ 331 (458)
T 2i4l_A 318 KANVTGPDGTDAPI 331 (458)
T ss_dssp TCEEECTTSCEEEC
T ss_pred CcEEECCCCCEece
Confidence 99999999887443
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-33 Score=319.54 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=200.8
Q ss_pred hHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHH--HcCcEEEecCcccchhhhhhhCcccccCCC
Q psy10609 436 DHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYR--KRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 509 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~--~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e 509 (715)
.|.+|+++.+++.... ..+|+++|+|.|++++++|+++|++.+. +.||++|.||+|.+.++|++||||++|.++
T Consensus 7 ~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~ 86 (505)
T 1ati_A 7 ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADP 86 (505)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEE
T ss_pred HHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcc
Confidence 4888999999876543 1389999999999999999999999998 999999999999999999999999999998
Q ss_pred ceEE-------------------------------------------e-----------------ec-------------
Q psy10609 510 MFSF-------------------------------------------D-----------------VE------------- 516 (715)
Q Consensus 510 my~~-------------------------------------------~-----------------d~------------- 516 (715)
||++ . +.
T Consensus 87 m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fn 166 (505)
T 1ati_A 87 MVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFN 166 (505)
T ss_dssp EEEC--------------------------------------------------------------------CCCCEEEE
T ss_pred ceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhh
Confidence 8872 1 10
Q ss_pred -------------CceEEEecCChHHHHHHHHhhhccc-CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 517 -------------NETYALKPMNCPGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 517 -------------~~~l~LRPt~e~~~~~~~~~~~~s~-~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
++.++|||++|++++..|++.+.|| ++||+|++|+|+|||+|.+++ +||+|+|||+|.|+|+||+
T Consensus 167 lmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr-~GL~R~REF~q~d~~~f~~ 245 (505)
T 1ati_A 167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVR 245 (505)
T ss_dssp CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCC-TGGGSCSEEEEEEEEEEEC
T ss_pred hhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCC-CCCCcccceEEeeEEEEEC
Confidence 2467999999999999999899999 899999999999999998775 7999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC-CCCC-CCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceee
Q psy10609 583 VEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP-EKYL-GELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKID 659 (715)
Q Consensus 583 ~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~-ek~~-gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid 659 (715)
++++.+++.+++.++.++|++|||+ +.+.++.++ +.+. ++.++|+. +++. ++...+..|+.|++..+
T Consensus 246 ~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~------E~~~----p~~~~e~~g~~~~~d~~ 315 (505)
T 1ati_A 246 PGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDI------LYRF----PHGSLELEGIAQRTDFD 315 (505)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEE------EEEE----TTEEEEEEEEEECTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhH------Hhhc----CCCCccchhhhccccee
Confidence 9999999999999999999999998 556666654 4443 56666631 1111 11111223566777655
Q ss_pred EEeecC-CCCccccccceeccCcccccCcEEEcCCCcee
Q psy10609 660 ITITDA-LKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697 (715)
Q Consensus 660 ~~~~D~-~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~ 697 (715)
+...++ .|+.+ .|+|+|++.++||+++|++++|+.+
T Consensus 316 L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y~d~~g~~~ 352 (505)
T 1ati_A 316 LGSHTKDQEALG--ITARVLRNEHSTQRLAYRDPETGKW 352 (505)
T ss_dssp HHHHCSSTTTTT--CCSCCCCCSCCCSCCCEECSSSCCE
T ss_pred cchhhccccccc--eeeeecccccceeEEEEEcCCCCee
Confidence 332222 34444 4888999999999999999998865
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-32 Score=302.85 Aligned_cols=233 Identities=21% Similarity=0.275 Sum_probs=193.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cc-ccccCCCceEEeec--CceEEEecCCh
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE--NETYALKPMNC 527 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~-~~~~~~emy~~~d~--~~~l~LRPt~e 527 (715)
.++|+++|+|.|+.+++.|++++++.++++||++|.||+|++.++|.++ || |+.+.++||+|.|. |+.++|||++|
T Consensus 34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t 113 (467)
T 4e51_A 34 GVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENT 113 (467)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSH
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccH
Confidence 3689999999999999999999999999999999999999999999988 98 78889999999874 78999999999
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 528 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 528 ~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
++++++++....++ ++|+|+|++|+|||+|+++. | |+|||+|+|+|+||.++ .+++| ++.++.++|+.|||
T Consensus 114 ~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~--g--R~ReF~Q~d~ei~g~~~~~adaE---vi~l~~~~l~~lGl 185 (467)
T 4e51_A 114 AAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQR--G--RYRQFHQVGVEALGFAGPDADAE---IVMMCQRLWEDLGL 185 (467)
T ss_dssp HHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHHHH---HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHccccc-CCCEEEEEEccEEccCCCCC--C--CcCceEEEEEEEEeCCChHHHHH---HHHHHHHHHHHcCC
Confidence 99999999888888 69999999999999999885 7 99999999999999986 45544 78999999999999
Q ss_pred E-EEEEEccCCC------------CCCC----------------------------CHHHHH--------------HHHH
Q psy10609 607 T-FNLRLSTRPE------------KYLG----------------------------ELEVWN--------------KAEK 631 (715)
Q Consensus 607 ~-~~v~l~~~~e------------k~~g----------------------------d~e~w~--------------~a~~ 631 (715)
+ |++.+++++. ++++ ..+.|. ...+
T Consensus 186 ~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~ 265 (467)
T 4e51_A 186 TGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFE 265 (467)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHH
T ss_pred CceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHH
Confidence 5 9999998641 0110 001111 2236
Q ss_pred HHHHHHHhcCCCccccCC---CCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceeccc
Q psy10609 632 QLEASLNSFGEPWTENPG---DGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 632 ~L~~~L~~~g~~~~~~~g---~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
.|.++|+.+|++|.++++ +.+||++++...+.|+.|+. +||+ .+-|||. |++..|.+..|.
T Consensus 266 ~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~---~tI~----~GGRYD~-Lv~~~g~~~~Pa 329 (467)
T 4e51_A 266 GLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQ---GTVA----AGGRYDP-LIEQLGGKPTAA 329 (467)
T ss_dssp HHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC-------CEEE----EEEECTH-HHHHTTSSCCCE
T ss_pred HHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCc---ceec----CCCcHHH-HHHHhCCCCCCc
Confidence 788889999999999998 78999999998899988876 6776 5899998 888888766664
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-32 Score=304.87 Aligned_cols=226 Identities=17% Similarity=0.208 Sum_probs=181.8
Q ss_pred HHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHH-HHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe--
Q psy10609 438 RKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSE-YRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-- 514 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~-~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~-- 514 (715)
.++..+.+++.. -.++|+++|+|.|++++++|++++++. +.+.||++|.||.|++.++|++|||++.|.++||.+.
T Consensus 206 ~~ll~raG~i~~-~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~ 284 (522)
T 2cja_A 206 TQAMMKEGWLKR-GSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPP 284 (522)
T ss_dssp HHHHHHTTSEEE-CSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECB
T ss_pred HHHHHHCCCeee-eCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecC
Confidence 567778888753 247999999999999999999999975 8999999999999999999999999999999999984
Q ss_pred ---e--------------------------cCceEEEecCChHHHHHHHHhhhcccCCCCeEEEE-eccCcccCCCCCCC
Q psy10609 515 ---V--------------------------ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD-FGVLHRNELSGALT 564 (715)
Q Consensus 515 ---d--------------------------~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~-~g~~FR~E~~~~l~ 564 (715)
+ +++.++||||+|++++.+|++++.|+++||+|++| +|+|||+| ++.++
T Consensus 285 ~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~ 363 (522)
T 2cja_A 285 QTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIH 363 (522)
T ss_dssp SCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCC
T ss_pred CccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCC
Confidence 2 25789999999999999999999999999999999 99999999 66568
Q ss_pred CcceeeeEeEeeEEEEeCchhHHHHHHHHH-HHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy10609 565 GLTRVRRFQQDDAHIFCTVEQIGDEIVGAL-DFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEP 643 (715)
Q Consensus 565 GL~R~REFtq~d~~if~~~eqa~~E~~~~l-~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~ 643 (715)
||+|+|||+|+|+|+||+++++.+++.+++ ..+..+++.|||+ ++.+.. +.+.+.++-. ..+ .
T Consensus 364 GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~~~~--D~f~~a~~G~------~G~-~------ 427 (522)
T 2cja_A 364 GIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WRKARV--TPWFMAQEGL------LGL-A------ 427 (522)
T ss_dssp CTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEEEEC-----------------------------
T ss_pred CCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EEeecc--CCcccccccc------ccc-h------
Confidence 999999999999999999999999999999 8999999999999 555421 2222111000 000 0
Q ss_pred ccccCCCCccc-cceeeEEeec----CCCCccccccce--eccCcccccCcEEE
Q psy10609 644 WTENPGDGAFY-GPKIDITITD----ALKRPHQCATIQ--LDFQLPIRFNLAYV 690 (715)
Q Consensus 644 ~~~~~g~~afY-gpkid~~~~D----~~gr~~q~~TiQ--lDf~~~~rf~l~Y~ 690 (715)
.++ ..+.|+.+.- +.|+..+|++++ .||| ++||+++|.
T Consensus 428 --------q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~q-arr~~Ir~~ 472 (522)
T 2cja_A 428 --------EENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKY-PKGFNVKLQ 472 (522)
T ss_dssp ----------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHH-HHHHTCEET
T ss_pred --------hccccceEEEEEecccccCCCcEEEEeeechhhhhc-ccccceEcC
Confidence 011 1345666543 356667788776 4777 999999985
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-30 Score=287.58 Aligned_cols=232 Identities=17% Similarity=0.286 Sum_probs=174.9
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh--CcccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s--G~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++ ||++.+.++||++.|. |+.++||||+|+
T Consensus 4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~ 83 (420)
T 1qe0_A 4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTA 83 (420)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChH
Confidence 4689999999999999999999999999999999999999999999988 8999999999999875 789999999999
Q ss_pred HHHHHHHhhhccc-CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 529 GHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 529 ~~~~~~~~~~~s~-~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
+++++++++..++ ++||+|+||+|+|||+|+++. | |+|||+|.|+|+||.++ .+++| ++.++.++|+.|||
T Consensus 84 ~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~--g--R~reF~q~~~e~~~~~~~~~d~e---~i~~~~~~l~~lgl 156 (420)
T 1qe0_A 84 AVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK--G--RYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGL 156 (420)
T ss_dssp HHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccccCCCCeEEEEecCEeecCCCcC--C--CcccEEEeeEEEECCCCchhHHH---HHHHHHHHHHHcCC
Confidence 9999999888888 899999999999999997764 7 99999999999999986 45544 78899999999999
Q ss_pred E-EEEEEccCC------------CCCC----------------------------CCHHHHHHH--------------HH
Q psy10609 607 T-FNLRLSTRP------------EKYL----------------------------GELEVWNKA--------------EK 631 (715)
Q Consensus 607 ~-~~v~l~~~~------------ek~~----------------------------gd~e~w~~a--------------~~ 631 (715)
+ |++.+++.+ ++++ ++.+.|..+ .+
T Consensus 157 ~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~ 236 (420)
T 1qe0_A 157 KHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYE 236 (420)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHH
T ss_pred CceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHH
Confidence 8 999998742 0111 122334322 15
Q ss_pred HHHHHHHhcCCCccccCC---CCccccce-eeEEeecCC---CCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 632 QLEASLNSFGEPWTENPG---DGAFYGPK-IDITITDAL---KRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 632 ~L~~~L~~~g~~~~~~~g---~~afYgpk-id~~~~D~~---gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
.|.++|+..|+++.++++ ...||+++ +|+ +.++. |+. +|++ .+.|||. +.+..|.+..|
T Consensus 237 ~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~-~~~~~~~~g~~---~~i~----~GgRYd~-l~~~~g~~~~P 302 (420)
T 1qe0_A 237 QVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFEL-MMDNPNYDGAI---TTLC----GGGRYNG-LLELLDGPSET 302 (420)
T ss_dssp HHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEE-EEECTTSTTSE---EEEE----EEEEEES-HHHHTTCCCCE
T ss_pred HHHHHHHHcCCeEEECcccccchhhhcCeEEEE-EEcCCCCCCCc---Cccc----cCccHHH-HHHHhCCCCCC
Confidence 677788888999988888 56899665 477 66666 543 4553 5777777 67777755555
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=275.75 Aligned_cols=217 Identities=15% Similarity=0.119 Sum_probs=174.0
Q ss_pred cCC-CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--------------
Q psy10609 451 ELS-PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-------------- 515 (715)
Q Consensus 451 ~~~-~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-------------- 515 (715)
+.+ +|++.+.+.+++|+++|++++++ ..+.||++|.||.|.+.++|++||||++|.++||.+..
T Consensus 50 ~~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~ 128 (346)
T 3mf2_A 50 SMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128 (346)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHH
T ss_pred ccCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhh
Confidence 554 89999999999999999999999 98999999999999999999999999999999999743
Q ss_pred -----------cCceEEEecCChHHHHHHHHhh-hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc
Q psy10609 516 -----------ENETYALKPMNCPGHCLIFDHR-VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 583 (715)
Q Consensus 516 -----------~~~~l~LRPt~e~~~~~~~~~~-~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~ 583 (715)
.+.+|+|+||+|++++.+++++ +++ +.|+|+..+|+|||+|++ +||+|+|||+|+|+++||+|
T Consensus 129 ~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tp 203 (346)
T 3mf2_A 129 FDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTP 203 (346)
T ss_dssp HHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESH
T ss_pred hccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCH
Confidence 1347999999999999999975 555 459999999999999994 59999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHH-HhcCCCccc---cCCCCccccceee
Q psy10609 584 EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL-NSFGEPWTE---NPGDGAFYGPKID 659 (715)
Q Consensus 584 eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L-~~~g~~~~~---~~g~~afYgpkid 659 (715)
+|+.++++++++.+.++++.|||+|++.+++ +-++++.. .+.... ....++|++ .|+++.|
T Consensus 204 Eqs~~e~e~l~~~ae~il~~LgLpyrv~~~~--D~~f~~~G-------~l~~~~Q~~~~~kyDlevw~p~~~~y------ 268 (346)
T 3mf2_A 204 DDVSDFRERWMVRAQAIARDLGLTFRVDYAS--DPFFGRVG-------QMKAVSQKQQQLKFELLIPLRSEEQP------ 268 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEECC--CCCCHHHH-------HHHHHHHHHTTCEEEEEECSSCSSSC------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEcc--CCCcCccc-------chhhhccccccceEEEEEEcCCCCCe------
Confidence 9999999999999999999999999998763 23333211 111100 011223332 3444444
Q ss_pred EEeecCCCCc-cccccceeccCcccccCcEEEcCCCceeccccccc
Q psy10609 660 ITITDALKRP-HQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTL 704 (715)
Q Consensus 660 ~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~ 704 (715)
++ .+|+.+ .||| ++||+|+|.+ |+ +++|+
T Consensus 269 --------~EisS~Sn~-~dfq-arR~~Ir~~~--~~----~vHT~ 298 (346)
T 3mf2_A 269 --------TACMSFNYH-REHF-GTTWGIQDAN--GE----PAHTG 298 (346)
T ss_dssp --------EEEEEEEEC-TTHH-HHHHTCBCTT--SS----BCEEE
T ss_pred --------eEEEeeecc-cchh-hhhhcceeCC--CC----eEEEc
Confidence 33 566666 7999 9999999963 42 36775
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-30 Score=299.01 Aligned_cols=263 Identities=20% Similarity=0.245 Sum_probs=173.1
Q ss_pred HHHHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCce
Q psy10609 437 HRKIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 511 (715)
Q Consensus 437 H~~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy 511 (715)
-..|+++.+++.... + .+|+++|+|.|+.++++|+++|++.+. ..||++|.||+|.+.++|++||||++|.+.||
T Consensus 70 ~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~ 149 (693)
T 2zt5_A 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV 149 (693)
T ss_dssp HHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEE
T ss_pred HHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccce
Confidence 446777777665442 1 389999999999999999999999997 56999999999999999999999999988776
Q ss_pred EEee----------------------------------------------------------------------------
Q psy10609 512 SFDV---------------------------------------------------------------------------- 515 (715)
Q Consensus 512 ~~~d---------------------------------------------------------------------------- 515 (715)
++.+
T Consensus 150 ~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~ 229 (693)
T 2zt5_A 150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFK 229 (693)
T ss_dssp EBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCE
T ss_pred eeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeee
Confidence 4311
Q ss_pred ------cCceEEEecCChHHHHHHHHhhhcc-cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhH--
Q psy10609 516 ------ENETYALKPMNCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI-- 586 (715)
Q Consensus 516 ------~~~~l~LRPt~e~~~~~~~~~~~~s-~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa-- 586 (715)
+++..+|||+++++++..|++.+.+ |++||++++|+|++||||.+++ +||+|+|||+|.|+|+||.|++.
T Consensus 230 t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr-~GLlR~REF~q~d~e~F~~p~~~~~ 308 (693)
T 2zt5_A 230 TFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPR-SGLIRVREFTMAEIEHFVDPSEKDH 308 (693)
T ss_dssp EECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCC-SGGGSCSEEEEEEEEEEECTTCCCC
T ss_pred ccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCC-CCCccceeeEEccceEEeCcchhcc
Confidence 2367899999999999999988877 7899999999999999998876 89999999999999999998754
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHcCcE-EEEEEccC-C-CC-----
Q psy10609 587 ----------------------------------------GDEIVGALDFLRNVYSIFGFT-FNLRLSTR-P-EK----- 618 (715)
Q Consensus 587 ----------------------------------------~~E~~~~l~~~~~il~~LGl~-~~v~l~~~-~-ek----- 618 (715)
.+++..++..+.+++..|||+ ..++++.+ + +.
T Consensus 309 ~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~ 388 (693)
T 2zt5_A 309 PKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYAC 388 (693)
T ss_dssp TTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCS
T ss_pred hhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchh
Confidence 255777899999999999996 44554444 2 22
Q ss_pred ---------CCCCHHHHHH---HHHHHHHHHHhcCCCcc---------------ccCCCCccccceeeE---EeecCCCC
Q psy10609 619 ---------YLGELEVWNK---AEKQLEASLNSFGEPWT---------------ENPGDGAFYGPKIDI---TITDALKR 668 (715)
Q Consensus 619 ---------~~gd~e~w~~---a~~~L~~~L~~~g~~~~---------------~~~g~~afYgpkid~---~~~D~~gr 668 (715)
..|..++|+. +.-.|...++..|.++. +.+++++| ||+++. .+.|.+++
T Consensus 389 ~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~~ 467 (693)
T 2zt5_A 389 DCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLAI 467 (693)
T ss_dssp SEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC-------------------------------------
T ss_pred hhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhhh
Confidence 2344444432 22468888888888766 35788888 999874 68888888
Q ss_pred cccc------------c--cceec---cCccc-ccCcE-EE-cCCCceecccc
Q psy10609 669 PHQC------------A--TIQLD---FQLPI-RFNLA-YV-KNVRAQTHELP 701 (715)
Q Consensus 669 ~~q~------------~--TiQlD---f~~~~-rf~l~-Y~-~~dg~~~~~~~ 701 (715)
.++. | ++++| |+++. ++++. |. ..+|.+..|.+
T Consensus 468 ~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~V 520 (693)
T 2zt5_A 468 CDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNV 520 (693)
T ss_dssp --------------------------------------------CCEEECCEE
T ss_pred hhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCcc
Confidence 7754 3 45556 77764 34443 43 34666666644
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-29 Score=279.95 Aligned_cols=251 Identities=13% Similarity=0.011 Sum_probs=170.5
Q ss_pred hhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceecc-CC------CeeE-EeCcccHHHHHHHHHHHHHHH--HH
Q psy10609 411 VYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE-LS------PGSC-FFQPKGAFIYNTLVEFIRSEY--RK 480 (715)
Q Consensus 411 ~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~-~~------~G~~-~~lP~G~~l~~~L~~~i~~~~--~~ 480 (715)
+.|+.||++.+|... ...+.+|+++.+++.... +. +|++ +|+|.|+.|+++|++++++.+ .+
T Consensus 9 ~~~~~~~~~~~~~~~--------~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~ 80 (454)
T 1g5h_A 9 ADGTQQPDAPEHAVA--------REALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFR 80 (454)
T ss_dssp ------------------------CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCChhHHHHH--------HHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhc
Confidence 346668988887431 234778999998876543 21 3766 999999999999999999885 58
Q ss_pred cCcEEEecCcccchhhhhhh--Cc---ccccCCC----------ceEEe--ecCceEEEecCChHHHHHHHHhhhcccC-
Q psy10609 481 RGFQEVVSPNVYNVKLWQTS--GH---WAHYSEN----------MFSFD--VENETYALKPMNCPGHCLIFDHRVRSWR- 542 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~s--G~---~~~~~~e----------my~~~--d~~~~l~LRPt~e~~~~~~~~~~~~s~~- 542 (715)
.||.+|.||.|.+.++|+++ || ++++.++ ||.+. ..++.++||||||++++..|++...+++
T Consensus 81 ~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~ 160 (454)
T 1g5h_A 81 EQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNR 160 (454)
T ss_dssp TTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTT
T ss_pred CCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhccc
Confidence 99999999999999999877 88 8888754 44321 1245789999999999999999998888
Q ss_pred CCCeEEEEeccCcc---cCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCCCC
Q psy10609 543 ELPLRMADFGVLHR---NELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEK 618 (715)
Q Consensus 543 ~LPlrl~~~g~~FR---~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ek 618 (715)
+||++++|+|+||| +|.++. +||+|+|||+|+|+|+||.|+++.+++..++..+..+++.|||+ ..++....
T Consensus 161 ~LP~~~aqig~~fR~~~nE~s~~-~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~--- 236 (454)
T 1g5h_A 161 KLPFGLAQIGVCFHPVSNSNQTP-SSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADC--- 236 (454)
T ss_dssp BSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEEE---
T ss_pred CCCEEEEEeeeeccCCcccccCC-CCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecCC---
Confidence 99999999999999 699885 89999999999999999999999999999999999999999997 22222211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc--eeeEEeecCCCCccccccceeccCcccccCcEEEcCCCce
Q psy10609 619 YLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP--KIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQ 696 (715)
Q Consensus 619 ~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp--kid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~ 696 (715)
|+.. +....+++|....|.+++||. +.| +++++. +.+.||+++|+|. |++
T Consensus 237 -------~~~~------a~~~~~ie~~~p~g~~e~~g~~~~td----------~~l~~~----~~~s~~~l~y~d~-~~~ 288 (454)
T 1g5h_A 237 -------QDEL------GRKGSKLYYSFPWGKEPIETLWNLGD----------QELLHT----YPGNVSTIQGRDG-RKN 288 (454)
T ss_dssp -------ECTT------SCEEEEEEEEETTEEEEEEEEEEEES----------HHHHHH----STTCGGGSCEEET-TEE
T ss_pred -------HHHH------HhcCCCcEEecCCCceEEEEecCCCH----------HHHHhc----cCCceeeEEEECC-CCc
Confidence 2110 122334445554555555551 111 222221 2378899999995 555
Q ss_pred ecccc
Q psy10609 697 THELP 701 (715)
Q Consensus 697 ~~~~~ 701 (715)
..|.+
T Consensus 289 ~~P~v 293 (454)
T 1g5h_A 289 VVPCV 293 (454)
T ss_dssp ECCEE
T ss_pred EeeEE
Confidence 55643
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=264.93 Aligned_cols=156 Identities=19% Similarity=0.293 Sum_probs=142.5
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cc-ccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~-~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.++++++.|++.+++++.++||++|.||+|++.++|.++ |+ |+.+.++||+|.|. |+.++|||+.|+
T Consensus 6 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~ 85 (423)
T 1htt_A 6 AIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTA 85 (423)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHH
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchH
Confidence 4789999999999999999999999999999999999999999999987 87 88899999999886 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc-
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF- 606 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl- 606 (715)
++++++... .+++++|+|+||+|+|||+|+++ .| |+|||+|.|+|+||.++ .+++| ++.++.++|++||+
T Consensus 86 ~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p~--~g--R~Ref~Q~d~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~ 157 (423)
T 1htt_A 86 GCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQ--KG--RYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGIS 157 (423)
T ss_dssp HHHHHHHHH-TCSTTCCEEEEEEEEEECCCCCC--SS--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHTCG
T ss_pred HHHHHHHhc-ccccCCCeEEEEEcCEecCCCCC--CC--ccceeEEeeEEEECCCCchhhHH---HHHHHHHHHHHCCCC
Confidence 999998755 35789999999999999999777 48 99999999999999875 56666 57899999999999
Q ss_pred E-EEEEEccC
Q psy10609 607 T-FNLRLSTR 615 (715)
Q Consensus 607 ~-~~v~l~~~ 615 (715)
+ |++.+++.
T Consensus 158 ~~~~i~i~~~ 167 (423)
T 1htt_A 158 EHVTLELNSI 167 (423)
T ss_dssp GGCEEEEEEC
T ss_pred CCcEEEEcCC
Confidence 5 99999875
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=257.99 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=144.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cc-ccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~-~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.|+++++.|++.+++++.++||++|.||+|++.++|.++ |+ |+.+.++||++.|. |+.++|||+.|+
T Consensus 5 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~ 84 (421)
T 1h4v_B 5 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTA 84 (421)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchH
Confidence 4789999999999999999999999999999999999999999999988 87 89999999999876 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++.....+++++|+|+||+|+|||+|+++ .| |+|||+|.|+|+||.++ .+++| ++.++.++|++||++
T Consensus 85 ~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~--~g--R~REf~Q~g~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 85 AMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ--KG--RYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLR 157 (421)
T ss_pred HHHHHHHhccccccCCCeEEEEecCeecCCCCC--CC--CcccEEEccEEEECCCChhhhHH---HHHHHHHHHHHcCCC
Confidence 999999876567889999999999999999876 48 99999999999999875 56666 678999999999998
Q ss_pred -EEEEEccC
Q psy10609 608 -FNLRLSTR 615 (715)
Q Consensus 608 -~~v~l~~~ 615 (715)
|++.+++.
T Consensus 158 ~~~i~i~~~ 166 (421)
T 1h4v_B 158 RLKVKLSSV 166 (421)
T ss_pred ceEEEEcCC
Confidence 99999874
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-28 Score=270.36 Aligned_cols=218 Identities=18% Similarity=0.258 Sum_probs=172.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|+++|+|.|+++++.|++.+++++.++||++|.||.|++.++|.+ +|+ .+.++||+|.|. |+.++|||+.|++
T Consensus 8 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t~~ 85 (434)
T 1wu7_A 8 KIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEATPS 85 (434)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCChHH
Confidence 478999999999999999999999999999999999999999999987 687 678899999886 7899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++... .++ ++|+|+||+|+|||+|+++ .| |+|||+|.|+|+||.++ .+++| ++.++.++|++||++
T Consensus 86 ~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp~--~g--R~REF~Q~d~ei~g~~~~~ad~E---~i~~~~~~l~~lgl~~ 156 (434)
T 1wu7_A 86 TVRMVTSR-KDL-QRPLRWYSFPKVWRYEEPQ--AG--RYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLQD 156 (434)
T ss_dssp HHHHHTTC-TTC-CSSEEEEECCEEECCCCSC--SS--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred HHHHHHhc-CCC-CCCeEEEEEcCeecCCCCC--CC--CccceEEeeEEEEcCCChHhhHH---HHHHHHHHHHHcCCCC
Confidence 99999876 666 7999999999999999877 48 99999999999999985 56666 678999999999997
Q ss_pred -EEEEEccCC--CC---CCCCHHHHHHHHHHHHHHH---------------HhcCCCccccCCCCccc--cceeeEEe--
Q psy10609 608 -FNLRLSTRP--EK---YLGELEVWNKAEKQLEASL---------------NSFGEPWTENPGDGAFY--GPKIDITI-- 662 (715)
Q Consensus 608 -~~v~l~~~~--ek---~~gd~e~w~~a~~~L~~~L---------------~~~g~~~~~~~g~~afY--gpkid~~~-- 662 (715)
|++.+++++ +. .+| .+.|. .|.+++ ...|++....++.++|+ +|+++- +
T Consensus 157 ~~~i~l~~~g~~~~~~~~~g-~~~~~----~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-l~~ 230 (434)
T 1wu7_A 157 IYEIRINSRKIMEEIIGGMT-SSDPF----SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDE-MAR 230 (434)
T ss_dssp SEEEEEEEHHHHHHHHHTTC-SSCHH----HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHH-HHH
T ss_pred ceEEEECChhhHHHHHHHhC-cHhHH----HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH-HHH
Confidence 999999874 21 233 34442 233333 33444433333345677 787543 3
Q ss_pred -----ecCCCCccc---------cccceeccCcccccC
Q psy10609 663 -----TDALKRPHQ---------CATIQLDFQLPIRFN 686 (715)
Q Consensus 663 -----~D~~gr~~q---------~~TiQlDf~~~~rf~ 686 (715)
.+++.+.++ +.++++|+.+++.++
T Consensus 231 ~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgld 268 (434)
T 1wu7_A 231 ITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLS 268 (434)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCcc
Confidence 233333232 226999999998776
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-27 Score=261.60 Aligned_cols=143 Identities=13% Similarity=0.027 Sum_probs=121.3
Q ss_pred eeEEeCcccHHHHHHHHHHHHHHHH-HcC-cEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHH
Q psy10609 455 GSCFFQPKGAFIYNTLVEFIRSEYR-KRG-FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCL 532 (715)
Q Consensus 455 G~~~~lP~G~~l~~~L~~~i~~~~~-~~G-y~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~ 532 (715)
|.++|+|+|+.|++.|++.|+..+. +.| +.+|.||+ .++|++||||++|. ++||||+|+++..
T Consensus 95 ~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~------------~~LRPeTaqg~~~ 159 (459)
T 3ikl_A 95 CHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR------------GGLRENLLHGALE 159 (459)
T ss_dssp CSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT------------TB-CSCSHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc------------ceECCCCChhHHH
Confidence 4459999999999999996666654 466 67799999 56699999999986 7899999999999
Q ss_pred HHHhhhcccC-CCCeEEEEeccCcccCC--CCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE--
Q psy10609 533 IFDHRVRSWR-ELPLRMADFGVLHRNEL--SGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-- 607 (715)
Q Consensus 533 ~~~~~~~s~~-~LPlrl~~~g~~FR~E~--~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-- 607 (715)
.|++...+++ +||++++|+|+|||+|+ ++..+||+|+|||+|+|+|+||.|+++.+++..++..+..+++.|||+
T Consensus 160 nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~ 239 (459)
T 3ikl_A 160 HYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPS 239 (459)
T ss_dssp HTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGG
T ss_pred HHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999998 99999999999999997 344589999999999999999999999999999999999999999997
Q ss_pred -EEEEE
Q psy10609 608 -FNLRL 612 (715)
Q Consensus 608 -~~v~l 612 (715)
|++.-
T Consensus 240 ~~r~~~ 245 (459)
T 3ikl_A 240 NFSSSD 245 (459)
T ss_dssp GEEEEE
T ss_pred hEEEee
Confidence 66653
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-26 Score=246.05 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=136.5
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh--CcccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s--G~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+| |+++.+.++||++.|. |+.++|||+.|+
T Consensus 24 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~ 103 (344)
T 1z7m_A 24 LPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTL 103 (344)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcH
Confidence 4789999999999999999999999999999999999999999999986 8999999999999886 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++... ++++|+|+||+|+|||+|+++ .| |+|||+|+|+|+||.++ .+++| ++.++.++|+.||++
T Consensus 104 ~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~--~g--R~REF~Q~g~ei~g~~~~~aDaE---vi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 104 PLVRLYSQI---KDSTSARYSYFGKIFRKEKRH--KG--RSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLN 173 (344)
T ss_dssp HHHHHHHTC---CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHH---HHHHHHHHHHHHTCS
T ss_pred HHHHHHHhc---CCCCCeEEEEECcEEccCCCC--CC--CcceeEEEEEEEEcCCCcHHHHH---HHHHHHHHHHHCCCC
Confidence 999988764 668999999999999999887 48 99999999999999875 55655 788999999999997
Q ss_pred -EEEEEccCC
Q psy10609 608 -FNLRLSTRP 616 (715)
Q Consensus 608 -~~v~l~~~~ 616 (715)
|++.+++++
T Consensus 174 ~~~i~l~~~g 183 (344)
T 1z7m_A 174 KTVFEIGSAK 183 (344)
T ss_dssp SEEEEEEEHH
T ss_pred cEEEEECCHH
Confidence 999999873
|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=235.32 Aligned_cols=179 Identities=21% Similarity=0.279 Sum_probs=163.4
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------HHH
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------MEG 284 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------Le~ 284 (715)
+|+|++|||+.+++++ |+|+.|+|+.++..+++.+|||+|||++++ +++++.+++.++++|.++.+| ..+
T Consensus 1 ~i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~d--L~~~l~~~~~ve~it~~~~~g~~~~~HS~~H 77 (224)
T 1tke_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVD--ACDLIENDAQLSIITAKDEEGLEIIRHSCAH 77 (224)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEE--TTCCBCSCEEEEEECTTSHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEec--cceEcCCCCeEEEEecCchhHHHHHHHHHHH
Confidence 4899999999999998 999999999999999999999999999996 578999999999999999877 478
Q ss_pred HHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 285 LMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 285 lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
+|..|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 78 lL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~~t~edl~~IE~---~m~~iI~~~~pi~~~~---------------- 138 (224)
T 1tke_A 78 LLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEK---RMHELAEKNYDVIKKK---------------- 138 (224)
T ss_dssp HHHHHHHHHSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHH---HHHHHHTTCCBCEEEE----------------
T ss_pred HHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCCCCHHHHHHHHH---HHHHHHhCCCCEEEEE----------------
Confidence 99999999998543 2589999999999 8999999999997774
Q ss_pred cCcChhhHHhhccc--Ccchhhcccc-ccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 347 RHTGKIKAFKVTKY--NPFKLRILKE-KVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 347 ~~t~~~eA~eLf~~--~~~Kl~Ll~~-~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|.. +++|++|++. ++.++.|++|+||+|+|+|+|||||+| |.++.|+|.+++|++|+
T Consensus 139 --~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~T---g~i~~fkl~~~~~~yw~ 207 (224)
T 1tke_A 139 --VSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM---RFCHHFKLMKTAGAYWR 207 (224)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBG---GGCCCEEEEEEEEEEGG
T ss_pred --ecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCEEEECCCcCCCcC---cccceEEEEEecceeEc
Confidence 899999999987 5899999987 755679999999999999999999999 77999999999999997
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=243.50 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=138.8
Q ss_pred cceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC-CCceEEeec-CceEEEe
Q psy10609 446 LFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS-ENMFSFDVE-NETYALK 523 (715)
Q Consensus 446 Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~-~emy~~~d~-~~~l~LR 523 (715)
||..-+.++|+++|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++| +.+. ++||++.|. |+.++||
T Consensus 19 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~~D~~g~~l~LR 96 (373)
T 3rac_A 19 VRGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRLFDGGGDAVALR 96 (373)
T ss_dssp CCCCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBCCCCSSSCEEEC
T ss_pred HHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEEECCCCCEEEEC
Confidence 33333567999999999999999999999999999999999999999999999887 4667 899999876 7899999
Q ss_pred cCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCC----CCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHH
Q psy10609 524 PMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGAL----TGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRN 599 (715)
Q Consensus 524 Pt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l----~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~ 599 (715)
|+.|+++++++.+...+ +++|+|+||+|+|||+|++|.+ .| |+|||+|+|+|+||.+++..++ .+++.++.+
T Consensus 97 pd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aD-aEvi~l~~~ 172 (373)
T 3rac_A 97 PEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEEASVDVD-MDVLRLLHE 172 (373)
T ss_dssp SSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSCCCHHHH-HHHHHHHHH
T ss_pred CcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCCCCHHHH-HHHHHHHHH
Confidence 99999999998876544 6899999999999999998421 36 9999999999999998543333 247899999
Q ss_pred HHHHcCcE-EEEEEccCC
Q psy10609 600 VYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 600 il~~LGl~-~~v~l~~~~ 616 (715)
+++.||++ |++.+++++
T Consensus 173 ~l~~lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 173 ASAAAGVRHHRIVVSHAR 190 (373)
T ss_dssp HHHHHTCCSCEEEEEETT
T ss_pred HHHHcCCCceEEEecCHH
Confidence 99999996 999999985
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=244.56 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=138.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.++|+++|+|.++.+++.|++.+++.++++||++|.||+|++.++|.++| +.+.++||+|.|. |+.++|||+.|+++
T Consensus 12 ~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~~ 89 (400)
T 3od1_A 12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAPI 89 (400)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHHH
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHHH
Confidence 47899999999999999999999999999999999999999999998886 5678899999886 78999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-E
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-F 608 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~ 608 (715)
++++.+.. .++++|+|+||+|+|||+|+++ .| |+|||+|+|+|+||.++ .+|+| ++.++.++++.||++ +
T Consensus 90 aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~--~g--R~Ref~Q~g~ei~G~~~~~aDaE---vi~l~~~~l~~lgl~~~ 161 (400)
T 3od1_A 90 ARLVASSL-KDRAYPLRLAYQSNVYRAQQNE--GG--KPAEFEQLGVELIGDGTASADGE---VIALMIAALKRAGLSEF 161 (400)
T ss_dssp HHHHHHHC-SSSCSCEEEEEEEEEECCCC-----C--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTCCSE
T ss_pred HHHHHhhc-ccCCCCeEEEEEcCEEeCCCCC--CC--CCCccEEeEEEEECCCChHhHHH---HHHHHHHHHHHCCCCce
Confidence 99988654 3578999999999999999887 48 99999999999999975 56665 789999999999996 9
Q ss_pred EEEEccCC
Q psy10609 609 NLRLSTRP 616 (715)
Q Consensus 609 ~v~l~~~~ 616 (715)
++.+++++
T Consensus 162 ~i~l~~~~ 169 (400)
T 3od1_A 162 KVAIGHVG 169 (400)
T ss_dssp EEEEEEHH
T ss_pred EEEecCHH
Confidence 99999873
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=241.42 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=136.0
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++ |+. +.++||+|.|. |+.++|||+.|++
T Consensus 31 ~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~~l~LRpd~T~~ 108 (456)
T 3lc0_A 31 PVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGHRVALRPEMTPS 108 (456)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSCEEEECSCSHHH
T ss_pred CCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCCEEecCCcCHHH
Confidence 4789999999999999999999999999999999999999999999864 763 67899999886 8899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc--
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF-- 606 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl-- 606 (715)
+++++.... .+.++|+|+||+|+|||+|+++. | |+|||+|+|+|+||.++ .+|+| ++.++.++++.||+
T Consensus 109 ~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~--g--R~ReF~Q~g~ei~G~~~~~~DaE---vi~l~~~~l~~lgl~~ 180 (456)
T 3lc0_A 109 LARLLLGKG-RSLLLPAKWYSIPQCWRYEAITR--G--RRREHYQWNMDIVGVKSVSAEVE---LVCAACWAMRSLGLSS 180 (456)
T ss_dssp HHHHHHHSC-TTCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHHHH---HHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcC-cccCCCEEEEEeccEEecCCCCC--C--CccceEEEEEEEEcCCChHhhHH---HHHHHHHHHHHcCCCC
Confidence 999998764 35689999999999999999884 8 99999999999999975 56665 78999999999999
Q ss_pred E-EEEEEccCC
Q psy10609 607 T-FNLRLSTRP 616 (715)
Q Consensus 607 ~-~~v~l~~~~ 616 (715)
+ |++.+++++
T Consensus 181 ~~~~i~in~~~ 191 (456)
T 3lc0_A 181 KDVGIKVNSRK 191 (456)
T ss_dssp TTEEEEEEEHH
T ss_pred CceEEEEcCHH
Confidence 4 999999863
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=242.79 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=128.8
Q ss_pred hhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcC------cceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHH
Q psy10609 407 SLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQE------LFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRK 480 (715)
Q Consensus 407 ~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~------Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~ 480 (715)
.+.+.+|..++.....++.....+|+.. .|.++..+++ -|.+ +.++|++||+|.++.+++.|++.+++.|.+
T Consensus 20 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~ 97 (517)
T 4g85_A 20 ELVKLQGERVRGLKQQKASAELIEEEVA-KLLKLKAQLGPDESKQKFVL-KTPKGTRDYSPRQMAVREKVFDVIIRCFKR 97 (517)
T ss_dssp -------------------------------------------CCCCCC-CCCTTCCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccccccCCHHHHHHHHH-HHHHhhhhcCCcccccceee-eCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888876666666666655432 2666665553 2233 247899999999999999999999999999
Q ss_pred cCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCC
Q psy10609 481 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNEL 559 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~ 559 (715)
+||++|.||+|++.++|.++.. ...++||+|.|. |+.++|||+.|+++++++.. ++.+|+|+||+|+|||+|+
T Consensus 98 ~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~----~~~~p~k~yyig~vfR~Er 171 (517)
T 4g85_A 98 HGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQGGELLSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDN 171 (517)
T ss_dssp HTCEECBCCSEEEHHHHHCC--------CSCBBCCTTSCCEEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC
T ss_pred CCCeEEECcccCcHHHhhcccC--cCcceeEEEECCCCCEEEeCCcCcHHHHHHHHh----CCCCCceeEEEeceEeccC
Confidence 9999999999999999975432 235789999886 88999999999999887753 4568999999999999998
Q ss_pred CCCCCCcceeeeEeEeeEEEEeCch--hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 560 SGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 560 ~~~l~GL~R~REFtq~d~~if~~~e--qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
++..+| |+|||+|+|+|+||.++ .+|+| ++.++.++++.||+. +.+.++++.
T Consensus 172 p~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~in~~~ 226 (517)
T 4g85_A 172 PAMTRG--RYREFYQCDFDIAGNFDPMIPDAE---CLKIMCEILSSLQIGDFLVKVNDRR 226 (517)
T ss_dssp ---------CCEEEEEEEEEESCCCTTHHHHH---HHHHHHHHHHHHCCCCEEEEEEEHH
T ss_pred cccccC--ccceeeeeceeccCCccchHHHHH---HHHHHHHHHHhhcCCcccccccchh
Confidence 865468 99999999999999865 45665 688999999999996 999998863
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=235.20 Aligned_cols=154 Identities=20% Similarity=0.339 Sum_probs=132.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCC-ceEEeec--------------
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSFDVE-------------- 516 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e-my~~~d~-------------- 516 (715)
.++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.++| +. .++ ||+|.|.
T Consensus 14 ~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~-~ke~m~~~~d~~~~g~~~~~~~~~~ 90 (465)
T 3net_A 14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQ-GDNIIYGLEPILPPNRQAEKDKSGD 90 (465)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC---CBEEEEEEEC-------------
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CC-CccceEEEecccccccccccccccC
Confidence 36899999999999999999999999999999999999999999998886 43 356 9999886
Q ss_pred --CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hH--HHHHH
Q psy10609 517 --NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI--GDEIV 591 (715)
Q Consensus 517 --~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa--~~E~~ 591 (715)
++.++|||+.|+++++++.... .+.++|+|+||+|+|||+|+++. | |+|||+|+|+++||.++ .+ |+|
T Consensus 91 ~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~--g--r~Ref~Q~g~ei~G~~~~~a~~DaE-- 163 (465)
T 3net_A 91 TGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAKD--G--RFRQFRQCDIDVVGREKLSLLYDAQ-- 163 (465)
T ss_dssp ---CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHHHH--
T ss_pred CCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCCC--C--CcceeEEeeEEEECCCCccchhhHH--
Confidence 6899999999999999988765 35689999999999999999884 8 99999999999999975 67 776
Q ss_pred HHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 592 GALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 592 ~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
++.++.++++.||++ |++.+++++
T Consensus 164 -vi~l~~~~l~~lgl~~~~i~in~~~ 188 (465)
T 3net_A 164 -MPAIITEIFEAVNIGDFVIRINNRK 188 (465)
T ss_dssp -HHHHHHHHHHHHTCSCEEEEEEEHH
T ss_pred -HHHHHHHHHHHcCCCceEEEECCHH
Confidence 689999999999996 999999874
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=227.65 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=129.3
Q ss_pred hHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee
Q psy10609 436 DHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV 515 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d 515 (715)
.|....++. |.+ +.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++.. ...++||+|.|
T Consensus 3 ~~~~~~~~~--~~~-~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D 77 (464)
T 4g84_A 3 GSEFELRRQ--FVL-KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKD 77 (464)
T ss_dssp ------------CC-CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCC
T ss_pred chhhhHhhc--cce-eCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEEC
Confidence 344444544 222 4578999999999999999999999999999999999999999999975432 23578999988
Q ss_pred c-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch--hHHHHHHH
Q psy10609 516 E-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVG 592 (715)
Q Consensus 516 ~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e--qa~~E~~~ 592 (715)
+ |+.++|||+.|+++++++.. ++.+|+|+||+|+|||+|+++.-+| |.|||+|+|+++||.++ .+|+|
T Consensus 78 ~~g~~l~LRPd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~erp~~~~g--R~Ref~Q~g~ei~G~~~~~~aDaE--- 148 (464)
T 4g84_A 78 QGGELLSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPDAE--- 148 (464)
T ss_dssp CSSCCEEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHHHH---
T ss_pred CCCCEEEeCCcCcHHHHHHHHh----cCCCCceeEEEecceeccCCccccC--ccceeeecceeccCCccchhhHHH---
Confidence 6 88999999999998887653 4578999999999999998864235 99999999999999865 45666
Q ss_pred HHHHHHHHHHHcCcE-EEEEEccC
Q psy10609 593 ALDFLRNVYSIFGFT-FNLRLSTR 615 (715)
Q Consensus 593 ~l~~~~~il~~LGl~-~~v~l~~~ 615 (715)
++.++.++++.||+. +.+.++++
T Consensus 149 vi~l~~~~l~~lgl~~~~i~i~~~ 172 (464)
T 4g84_A 149 CLKIMCEILSSLQIGDFLVKVNDR 172 (464)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEEH
T ss_pred HHHHHHHHHHHhCCCCcceeecch
Confidence 688999999999997 99999876
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=241.83 Aligned_cols=181 Identities=22% Similarity=0.279 Sum_probs=164.0
Q ss_pred CceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------HH
Q psy10609 211 EEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------ME 283 (715)
Q Consensus 211 ~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------Le 283 (715)
.+|+|++|||+.++++. |+|+.|||+.+++.+++.+|||+|||++++ +++++..++.++++|.++.+| ..
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~d--l~~~l~~d~~v~~~~~~~~~g~~~~~HSa~ 78 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVD--LTKPLETDGSIEIVTPGSEEALEVLRHSTA 78 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEEC--TTSCCCSCBCCCEECTTSHHHHHHHHHHHH
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEe--CCcccCCCCeEEEeeccchhHHHHHHHHHH
Confidence 47999999999999996 999999999999999999999999999985 689999999999999999887 47
Q ss_pred HHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCcc
Q psy10609 284 GLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH 345 (715)
Q Consensus 284 ~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~ 345 (715)
++|..|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 79 HlL~~A~~~~~~~~~~~~g~~~~~g~~~Df~~~~~~t~edl~~IE~---~m~~iI~~~~pi~~~~--------------- 140 (645)
T 1nyr_A 79 HLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEK---TMKQIVNENMKIERKV--------------- 140 (645)
T ss_dssp HHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSCCCSTTHHHHHH---HHHHHHHTTCCEEEEE---------------
T ss_pred HHHHHHHHHHcCCcEEEECCccCCceEEEecCCCCCCHHHHHHHHH---HHHHHHHhCCCeEEEE---------------
Confidence 899999999998643 2579999999999 8999999999987764
Q ss_pred ccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 346 VRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 346 ~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|..+++|++|++..+.++.|++|+||+|+|+|+||||||| |.++.|+|++++|++|..
T Consensus 141 ---~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~~dlC~G~Hv~~T---g~i~~fkl~~~~~a~~~~ 207 (645)
T 1nyr_A 141 ---VSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPST---AKIKEFKLLSTAGAYWRG 207 (645)
T ss_dssp ---CTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTEEEECCSCCCSCG---GGCCEEEEEEEEEEETTS
T ss_pred ---ecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCEEEecCCcccCCC---CCCceEEEeeeCchHHHH
Confidence 8999999999888999999998876568999999999999999999999 889999999999999984
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-23 Score=237.94 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=162.8
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHH-------HH
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVM-------EG 284 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gL-------e~ 284 (715)
+|+||||||+.+++++ |+|+.|+|+.|++.+++.+|||+|||++++ ++++++.++.++++|.++.+++ .+
T Consensus 1 ~~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~d--l~~~l~~d~~~~~~~~~~~~~~~~~~HSa~H 77 (642)
T 1qf6_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVD--ACDLIENDAQLSIITAKDEEGLEIIRHSCAH 77 (642)
T ss_dssp -CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEE--TTSCBCSCEECCEECTTSHHHHHHHHHHHHH
T ss_pred CceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEec--cccccCCCceEEEeecCcHHHHHHHHHHHHH
Confidence 4899999999999996 999999999999999999999999999985 6899999999999999998874 77
Q ss_pred HHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 285 LMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 285 lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
+|..|+++++|..+ ..+|.+|+.+|++ .|.++|+++.|+.+..
T Consensus 78 lL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~~t~edl~~IE~---~m~~iI~~~~~v~~~~---------------- 138 (642)
T 1qf6_A 78 LLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEK---RMHELAEKNYDVIKKK---------------- 138 (642)
T ss_dssp HHHHHHHHHCTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHH---HHHHHHHHTCBEEEEE----------------
T ss_pred HHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCCCCHHHHHHHHH---HHHHHHHcCCCEEEEE----------------
Confidence 99999999998643 2589999999999 8999999999887764
Q ss_pred cCcChhhHHhhccc--Ccchhhcc-ccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 347 RHTGKIKAFKVTKY--NPFKLRIL-KEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 347 ~~t~~~eA~eLf~~--~~~Kl~Ll-~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|+. +++|++++ +..+.++.|++|+||+|+|+|+|||||+| |.++.|+|++++|.+|.
T Consensus 139 --~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~T---g~I~~fkl~~~~~~yw~ 207 (642)
T 1qf6_A 139 --VSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM---RFCHHFKLMKTAGAYWR 207 (642)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBG---GGCCSEEEEEEEEEEGG
T ss_pred --ecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCEEEecCCCccCCC---CcceeEEEeeecccccc
Confidence 899999999987 68999999 77765568999999999999999999999 78999999999999998
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-20 Score=193.06 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=119.4
Q ss_pred HHHHHHH--HHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC-CC
Q psy10609 469 TLVEFIR--SEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE-LP 545 (715)
Q Consensus 469 ~L~~~i~--~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~-LP 545 (715)
.|+++++ +.+.++||++|.||+|++.++|.+ + +|. +.+|+.++|||+.|++++ .+.. .+++ +|
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d-~f~-d~~g~~l~LRpd~T~~~a---~~~~-~~~~~~p 70 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N-FFL-DRKGNLFSIREDFTKTVL---NHRK-RYSPDSQ 70 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S-CEE-ETTSCEEEECCCHHHHHH---HHHT-TCTTCCC
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c-ccC-CCCCCEEEeCCcChHHHH---HHHh-hcCCCCc
Confidence 4778888 999999999999999999999965 2 452 234899999999999998 3333 3667 99
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC--CCCCC
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP--EKYLG 621 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~--ek~~g 621 (715)
+|++++|+|||+|+++. |||+|+|+|+||.++ .+++| ++.++.++++.||++ +++.+|+++ ++.++
T Consensus 71 ~R~~y~g~vfR~e~~~~-------Ref~Q~g~ei~g~~~~~~DaE---vi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~ 140 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL-------VAEYQLGLEKVPRNSLDDSLE---VLEIIVESASEFFEGPVIVEIGHTGVYEDLLK 140 (275)
T ss_dssp EEEECCEEEEEEETTEE-------EEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHCCSCEEEEEEETTHHHHHHT
T ss_pred eEEEEeceEEecCCCCC-------CeeeEeCEEEecCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHH
Confidence 99999999999999873 999999999999986 45544 789999999999996 999999996 45554
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q psy10609 622 ELEVWNKAEKQLEASLNSFG 641 (715)
Q Consensus 622 d~e~w~~a~~~L~~~L~~~g 641 (715)
. .|+.+++.|.++|++.+
T Consensus 141 ~--~~~~~~~~l~~~l~~~~ 158 (275)
T 1usy_A 141 E--IPKDLHEKVLNLIDTKN 158 (275)
T ss_dssp T--SCGGGHHHHHHHHHTTC
T ss_pred h--CCHHHHHHHHHHHHccC
Confidence 4 56666666766665543
|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=158.47 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CceeecCCcCC-ceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEc
Q psy10609 141 EASSVFWHSTAHVLGEAMERVYG--GCLCYGPPIEN-GFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTL 217 (715)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~l 217 (715)
+|..++|||++|||+.|++++|| ..+..|+++++ |+|||++++..
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~-------------------------------- 49 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-------------------------------- 49 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC--------------------------------
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCC--------------------------------
Confidence 57899999999999999999998 46788999987 89999975322
Q ss_pred CCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCc
Q psy10609 218 PDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFE 297 (715)
Q Consensus 218 pdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~ 297 (715)
++.+++..|+..|.++|+++.|+.
T Consensus 50 --------------------------------------------------------~t~e~l~~IE~~~n~~I~~~~pi~ 73 (157)
T 1v4p_A 50 --------------------------------------------------------PSDEEIREIERLANEKVKENAPIK 73 (157)
T ss_dssp --------------------------------------------------------CCHHHHHHHHHHHHHHHHHTCBCE
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHHHHcCCCEE
Confidence 344455556666666666666666
Q ss_pred eeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccC-CCc
Q psy10609 298 RLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVN-TPT 376 (715)
Q Consensus 298 r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~-~~~ 376 (715)
+..++.++|.++|. .+.++.+. .++ .+.
T Consensus 74 ~~~~~~~eA~~~f~------------------------------------------------~~~~~~~~---~~~~~~~ 102 (157)
T 1v4p_A 74 IYELPREEAEKMFG------------------------------------------------EDMYDLFP---VPEDVRI 102 (157)
T ss_dssp EEEEEHHHHHHHHG------------------------------------------------GGGSCSSC---CCTTCCE
T ss_pred EEEeCHHHHHHhhC------------------------------------------------cccccccc---CCCCCCe
Confidence 66666666666554 21111110 111 157
Q ss_pred eEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhhc
Q psy10609 377 TTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYG 413 (715)
Q Consensus 377 vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G 413 (715)
|.+|+||+| +|+|+||||++| |.++.|+|.++.+
T Consensus 103 vrv~~ig~~~~~~C~GtHv~~T---g~I~~fki~~~~~ 137 (157)
T 1v4p_A 103 LKVVVIEDWNVNACNKEHTKTT---GEIGPIKIRKVRF 137 (157)
T ss_dssp EEEEEETTTEEEECCSCCCSBG---GGTCCEEEEEEEE
T ss_pred EEEEEECCeeEeCCCCCccCCh---hhcceEEEEEEEe
Confidence 999999999 999999999999 7799999998766
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=162.03 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
..++++++.+++.+..+||++|.||.|++.++|..+|+++. .+||.+.+ -+++++|||+++|++..+++....+ ++
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~-~~ 147 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERL-WD 147 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTT-SC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeecccccchhhhhcChHHHHHHHHHHHhC-CC
Confidence 34688999999999999999999999999999999998762 14553221 1256899999999999877766555 78
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCc-EEEEEE
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRL 612 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl-~~~v~l 612 (715)
+|+|++++|+|||+|.++. + |+|||+|.|++++|.+++++ +.+++.++..+++.||+ +|.+.-
T Consensus 148 ~PlrlfeiG~vFR~E~~~~--~--r~~EF~qle~~i~g~~~~~~--f~elkg~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 148 KPIRIFEIGTCYRKESQGA--Q--HLNEFTMLNLTELGTPLEER--HQRLEDMARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCEEEEEEEEEECSCCSSS--C--CCSEEEEEEEEEETCCGGGH--HHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCEEEEEEeeEEecCCCCC--C--cCccEEEEEEEEEcCCchhh--HHHHHHHHHHHHHHcCCCCcEEec
Confidence 9999999999999999874 4 88999999999999875433 44578899999999999 476653
|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-15 Score=130.46 Aligned_cols=78 Identities=63% Similarity=1.064 Sum_probs=73.9
Q ss_pred cceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhc
Q psy10609 36 ALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVN 115 (715)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (715)
.+++|++|||+++.+..+++|+.|+|+.++.++++.+++|+|||++|||++||+.||+|+++
T Consensus 10 ~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~v------------------ 71 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL------------------ 71 (88)
T ss_dssp CEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEEC------------------
T ss_pred CCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEE------------------
Confidence 56899999999999998789999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccccccCCCCChHHHHHHHHHHH
Q psy10609 116 GVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTA 151 (715)
Q Consensus 116 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 151 (715)
++++++|.++||||++
T Consensus 72 --------------------t~~~~eg~~i~rHS~~ 87 (88)
T 1wwt_A 72 --------------------KFEDEEAQAVYSGPSS 87 (88)
T ss_dssp --------------------SSCCSCCSCSCCCCSC
T ss_pred --------------------eCCCHHHhhheeccCC
Confidence 9999999999999974
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-12 Score=132.14 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccc--cCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAH--YSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~--~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
++++.+.+++.+...||+||.||.|++.+.+...+.... ..++||.+ ++.++|||+.+|.+...++... +....
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~LR~slsp~L~~~l~~n~-~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV---DKNFCLRPMLTPNLYNYLRKLD-RALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE---TTTEEECSCSHHHHHHHHHHHT-TTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee---CCCeeEcccChHHHHHHHHHhh-ccCCC
Confidence 478899999999999999999999999998877664332 34567777 3578999999999987665433 34579
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
|+|+|++|+|||+|..+. + |.+||+|.|+++++... . +.++..++..+++.||++|++.
T Consensus 155 p~rlfeiG~vFR~E~~~~--~--~~~Ef~ql~~~~~g~~~-~---f~elkg~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESDGK--E--HLEEFTMLVFWQMGSGC-T---RENLESIITDFLNHLGIDFKIV 213 (290)
T ss_dssp SEEEEEEEEEECCCSCSS--S--CCSEEEEEEEEEESTTC-C---HHHHHHHHHHHHHHHTCCCEEE
T ss_pred CeEEEEEcCEEecCCCCC--c--CcchheEEEEEEEcCCh-H---HHHHHHHHHHHHHHcCCCcEEe
Confidence 999999999999997653 5 89999999999998753 2 2346788889999999986653
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-11 Score=139.06 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecCCc--CCceEEEeec
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGCLCYGPPI--ENGFYYDMYL 182 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 182 (715)
.-++|||++|||+.|++++||..+..++|. .+|+|||+..
T Consensus 595 ~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~ 636 (739)
T 2ztg_A 595 RHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH 636 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeC
Confidence 458999999999999999999888777777 7899999964
|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-10 Score=118.25 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeecCCcC-CceEEEee
Q psy10609 142 ASSVFWHSTAHVLGEAMERVYGGCLCYGPPIE-NGFYYDMY 181 (715)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 181 (715)
..-+.|||++|||+.|++++||.. +.|+.++ ++||||+.
T Consensus 92 ~~~~~~HTa~HLL~~al~~~~g~~-~~G~~v~~~~~r~Df~ 131 (241)
T 3kew_A 92 FDGMQQHLGQHLLSGCFYDLFGAN-TCGFHLGKEISTVDIV 131 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECSSCEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCC-eEeccccCCeEEEEEC
Confidence 355889999999999999999876 5888885 78999996
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=108.03 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=82.7
Q ss_pred cccHHHHHHHHHHHHHHHHHcCcEEEecCcccch-hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhc
Q psy10609 461 PKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 461 P~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~-el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
..-.+++..+.+.+++.|.++||.+|.||.|++. +++..+..-+. .++|.+.-.++.++|+...+... ....
T Consensus 12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~~~~~~~~L~~Spe~~~-----~~l~ 84 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVEIYGVKMRLTHSMILHK-----QLAI 84 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEEETTEEEEECSCSHHHH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEEcCCCCEEeccChHHHH-----HHHh
Confidence 4556889999999999999999999999999998 76655411222 56788654467888975443322 2211
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 583 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~ 583 (715)
. . -|.|++++|+|||+|.+|.-.| |-+ ||||.|++..+.+
T Consensus 85 ~-~-g~~rvf~ig~~FR~E~pq~~~~--RH~~EFtqle~e~~~~~ 125 (294)
T 1nnh_A 85 A-M-GLKKIFVLSPNIRLESRQKDDG--RHAYEFTQLDFEVERAK 125 (294)
T ss_dssp H-T-TCCEEEEEEEEECCCCGGGCSS--SCCSEEEEEEEEEETCC
T ss_pred h-c-CccceEEEEccEeCCCCCCCCC--ccccceeEEEEEecCCC
Confidence 1 1 3789999999999999652125 777 9999999999875
|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=124.58 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCc-eeecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGC-LCYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
..+.|||++|||+.|++++||.. .+.|+.+ .+++|||+.....
T Consensus 608 ~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~----------------------------------- 652 (752)
T 2zze_A 608 QHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR----------------------------------- 652 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSC-----------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCC-----------------------------------
Confidence 45889999999999999999875 5788887 6789999964322
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
++.+++..++..|.++|+++.|.....
T Consensus 653 -----------------------------------------------------lt~edL~~IE~~vNeiI~~nlpV~~~~ 679 (752)
T 2zze_A 653 -----------------------------------------------------ISEEELXEIEMLANRIVMEDRXVTWEW 679 (752)
T ss_dssp -----------------------------------------------------CCHHHHHHHHHHHHHHHHHTCBEEEEE
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCccceee
Confidence 344455556666666666666666656
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEE
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAY 380 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY 380 (715)
++.++|.+++. ...++ ...+.++.|.+|
T Consensus 680 ~s~eEA~~~~~------------------------------------------------~~lf~----~ge~ygd~VRVV 707 (752)
T 2zze_A 680 LPRTTAEQXYG------------------------------------------------FRLYQ----GGVVPGREIRVV 707 (752)
T ss_dssp EEHHHHHHHHC------------------------------------------------GGGCS----SCCCCSSEEEEE
T ss_pred cCHHHHhhcch------------------------------------------------hhhhc----CCCCCCCeEEEE
Confidence 66666655443 10000 000013579999
Q ss_pred eeCCe-eeeccCcCCCCCccCCCcchhhhhhhhc
Q psy10609 381 RCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYG 413 (715)
Q Consensus 381 ~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G 413 (715)
++|+| +++|.||||++| |.++.|+|.+.++
T Consensus 708 ~IGd~svelCGGTHV~nT---geIG~fKIls~s~ 738 (752)
T 2zze_A 708 XIEDWDVQACGGTHLPST---GLVGPIXILRTER 738 (752)
T ss_dssp EETTTEEEECCSCCCSBG---GGGCCEEEEEEEE
T ss_pred EECCceeCCCCCCccCCH---hHccEEEEEEEEE
Confidence 99998 999999999999 7799999988765
|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.7e-09 Score=104.62 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC---ceeecCCc-CCceEEEeec
Q psy10609 140 EEASSVFWHSTAHVLGEAMERVYGG---CLCYGPPI-ENGFYYDMYL 182 (715)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~ 182 (715)
.....+.|||++|||+.|++++||. ... |+.+ .++||||+..
T Consensus 91 rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~-g~~v~~~~~r~Df~~ 136 (216)
T 2e1b_A 91 YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLV-GSGMSVEKGRYDIAY 136 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCEEE-ECCBCSSEEEEEEEC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCccceee-eeeEcCCcEEEEEeC
Confidence 4456689999999999999999987 444 5555 7789999964
|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.5e-09 Score=85.60 Aligned_cols=61 Identities=31% Similarity=0.311 Sum_probs=56.6
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeec
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (715)
.++|++|||+.+.++. ++|+.|+|+.++.+++...++|+|||+++||+++|..+|.|++++
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 3789999999988887 899999999998888889999999999999999999999999994
|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-09 Score=90.99 Aligned_cols=74 Identities=42% Similarity=0.544 Sum_probs=66.8
Q ss_pred hcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHH
Q psy10609 207 AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVM 282 (715)
Q Consensus 207 ~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gL 282 (715)
++..++|+|++|||+.++++.|++|+.|+|+.++..+++.+|||+|||++++ |++.+..++.+++++.++.+|+
T Consensus 6 ~~~~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~d--L~~~l~~d~~ve~vt~~~~eg~ 79 (88)
T 1wwt_A 6 SGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWD--LDRPLEEDCTLELLKFEDEEAQ 79 (88)
T ss_dssp CCSCCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEEC--SSSCCCSSEEEEECSSCCSCCS
T ss_pred cCCCCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEEC--CCcCcCCCCEEEEEeCCCHHHh
Confidence 3456789999999999999988999999999999999999999999999985 6889999999999999887654
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=102.86 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.++||.+|.||.|+.. .++ -..+||.+.-.++.++|+...+...-.+. +
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----~~e----~~~~~f~~~~~~~~~~L~~Spql~~~~~~-----~-- 197 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIAS----ATE----GGAQLFPVIYFGKEAFLAQSPQLYKELMA-----G-- 197 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CSS----TTCCCCEEEETTEEEEECSCCHHHHHHHH-----H--
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEee----CCC----CCceeEEEecCCceEEecCCcHHHHHHHH-----h--
Confidence 35678899999999999999999999999875 111 13478888656788999843343322222 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 583 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~ 583 (715)
-+-|+|++|+|||+|.+.. + |-+ ||||.|++....+
T Consensus 198 -g~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~ 234 (429)
T 1wyd_A 198 -VVERVFEVAPAWRAEESDT--P--FHLAEFISMDVEMAFAD 234 (429)
T ss_dssp -HHSEEEEEEEEECCCCCCS--S--SCCSEEEEEEEEEETCC
T ss_pred -CcCceEEEcccccccCCcc--c--cccceeeEeeeeecCCC
Confidence 1679999999999998864 5 777 9999999998875
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=105.09 Aligned_cols=101 Identities=15% Similarity=0.006 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.++||.+|.||.|+.. .++ -..+||.+.-.++.++||-.. ..+. ..+.+
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~-----~~e---~~~~~f~~~~~~~~~~Lr~Sp-el~~----~~~~~-- 198 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTG-----AVE---GGATLFKLKYFDKYAYLSQSA-QLYL----EAAIF-- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESC-----CSS---CGGGCCEEEETTEEEEECSCS-HHHH----HHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee-----cCC---CCceeEEEeecCCcEEeccCh-HHHH----HHHhc--
Confidence 45778899999999999999999999999865 111 134678886557889999222 2221 11211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 583 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~ 583 (715)
-|.|+|++|+|||+|.+.. + |-+ ||||.|++....+
T Consensus 199 -g~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 199 -GLEKVWSLTPSFRAEKSRT--R--RHLTEFWHLELEAAWMD 235 (434)
T ss_dssp -HHSEEEEEEEEECCCCCCC--S--SCCSEEEEEEEEEETCC
T ss_pred -CccceEEEecceecCCCCC--c--ccccEEEEeeEEEcCCC
Confidence 2789999999999998864 5 777 9999999998875
|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-08 Score=81.71 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=58.3
Q ss_pred cceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 36 ALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
..+.|++|||+++..+. ++|+.|+|..|+..+++.++.|+|||+++||++||..++.|+++
T Consensus 6 ~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVL 66 (78)
T ss_dssp CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEE
T ss_pred ceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEE
Confidence 46889999999999998 89999999999999999999999999999999999999999999
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.9e-07 Score=99.69 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..|.+.+++.|..+||.+|.||+|.... +|. +-++|.+.-.++.++|+-..+- +...+..
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~~----ga~~f~~~~~~~~~~L~~Spql-----~~k~l~~-- 241 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEG----GSSVFEVTYFKGKAYLAQSPQF-----NKQQLIV-- 241 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSS----SSCCCEEEETTEEEEECSCTHH-----HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CCC----CcccceeccCCccEEcccChHH-----HHHHHHh--
Confidence 457889999999999999999999999998854 221 2368888766789999932232 2222211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEE-EeCc-hhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHI-FCTV-EQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~i-f~~~-eqa~~E~~~~l 594 (715)
.-+-|+|++|+|||+|.++. + |-+ ||||.|++. |+.+ ++..+..++++
T Consensus 242 ~g~~rvy~ig~~FR~E~~~~--~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll 292 (487)
T 1eov_A 242 ADFERVYEIGPVFRAENSNT--H--RHMTEFTGLDMEMAFEEHYHEVLDTLSELF 292 (487)
T ss_dssp TTCCEEEEEEEEECCCCCCC--T--TCCSEEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred cCCCceEEEeccEecCCCCC--C--ccchhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 23569999999999999864 5 888 999999987 8764 44444444444
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-07 Score=100.78 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.++||.+|.||.|+... ++ -.-+||.+.-.++.++|+-..+... ..+. .
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~----~e----~~~~~f~~~~~g~~~~L~~Spel~~-~~l~----~-- 188 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG----AE----GGSGLFGVDYFEKRAYLAQSPQLYK-QIMV----G-- 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH-HHHH----H--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC----CC----CCceeEEEeeCCCcEEeeeCHHHHH-HHHh----h--
Confidence 357888999999999999999999999998752 11 1235777754467789983223222 2221 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeC
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCT 582 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~ 582 (715)
. +-|+|++|+|||+|.+.. | |-+ ||||.|++....
T Consensus 189 g-~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~ 224 (422)
T 1n9w_A 189 V-FERVYEVAPVWRMEEHHT--S--RHLNEYLSLDVEMGFI 224 (422)
T ss_dssp H-HSEEEEEEEC-----------------CCEEEEEEEESC
T ss_pred C-CCceeEEeCceECCCCCC--C--cccceeEEeeeeeeCC
Confidence 1 469999999999998864 5 777 999999999887
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=96.08 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..|.+.+++.|.++||.+|.||.|.+. ..|. ..++|.+..+ +..++||-..+ ++...+..
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~----~~Ga----~a~~F~~~~~~~~~~~yLr~Spq-----Lylk~l~v 239 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAV----AGGA----AARPFITHHNALDMTLYMRIAIE-----LHLKRLIV 239 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS----SSCCCEEEETTTTEEEEECSCSH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEec----CCCC----cccceEecccCCCceeEEecCHH-----HHHHHHhh
Confidence 35778899999999999999999999999864 1221 2367877533 77899994333 22222211
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.-.-|+|++|+|||+|.+.. . |..||||.|++....+ ++..+..++++
T Consensus 240 --~G~~rVyeig~~FR~E~~~~--r--H~pEFT~lE~e~af~d~~dlm~l~E~ll 288 (493)
T 3a74_A 240 --GGLEKVYEIGRVFRNEGIST--R--HNPEFTMLELYEAYADFRDIMKLTENLI 288 (493)
T ss_dssp --TTCCEEEEEEEEECCCCCBT--T--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred --cccCceEEECccccCCCCCc--c--cCCceeEEEEEecCCCHHHHHHHHHHHH
Confidence 13569999999999999874 4 9999999999997765 34333333333
|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-07 Score=75.97 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=58.3
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
+|+|++|||+.+++++ |+|+.|+++.++..++..+|||+|||+++++ ++.+.+++.+++++..+
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl--~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPL--SYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCT--TCBCCSSSBEEEEECCC
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCC--CcCcCCCCEEEEEECCC
Confidence 5899999999999998 9999999999998888999999999999864 68899999999998765
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.6e-06 Score=92.87 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++.+|.+.+++.|...||.+|.||.|.+. ..|. ..++|.+..+ +..++|+-..+- +...+..
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~----~~Ga----~ar~F~t~~~~~~~~~yL~~SpqL-----ylk~L~v 248 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNALDLDMYLRIAPEL-----YLKRLVV 248 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS----CCSS----CCCCCEEEETTTTEEEEECSCSHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec----CCCC----cccceEeccCCCCceEEeccCHHH-----HHHHHhh
Confidence 34678899999999999999999999999853 1221 2356776543 778999953332 2222111
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.-.=|+|++|+|||+|.+.. . |..||||.|++....+ ++..+..++++
T Consensus 249 --~G~~rVyeIg~~FR~E~~~~--r--H~pEFt~lE~e~af~d~~dlm~l~E~li 297 (504)
T 1e1o_A 249 --GGFERVFEINRNFRNEGISV--R--HNPEFTMMELYMAYADYHDLIELTESLF 297 (504)
T ss_dssp --HTCCEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred --cCCCcEEEEcccccCCCCCc--c--ccCceeeeeeeecCCCHHHHHHHHHHHH
Confidence 12359999999999998864 4 9999999999997665 34444434333
|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.7e-07 Score=75.20 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCCh
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDF 279 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~ 279 (715)
...|.|.+|||..+++++ |+|+.|+|..++...+..+++|+|||+.+++ ++.+.+++.+++++...+
T Consensus 5 ~~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L--~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 5 PEEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPI--DYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp -CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECT--TCBCCTTCBEEEEECC--
T ss_pred CceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCC--CcccCCCCEEEEEccCcc
Confidence 457999999999999998 9999999999999999999999999999864 688999999999998764
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=9.4e-06 Score=87.50 Aligned_cols=114 Identities=14% Similarity=0.012 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec------CceEEEecCChHHHHHHHHh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE------NETYALKPMNCPGHCLIFDH 536 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~------~~~l~LRPt~e~~~~~~~~~ 536 (715)
-.+++..|.+.+++.|.+.||.+|.||+|..... .| -.-..|.+.-- +..++|+-..+-..-.++.
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---~~----a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~- 106 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---TD----IHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV- 106 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---CC----TTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC---CC----CccceEEEEecCcccccCCCEeecCCHHHHHHHHHH-
Confidence 4578889999999999999999999999986431 11 12345655421 2567788544433322222
Q ss_pred hhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 537 RVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 537 ~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ .+ =|+|++|+|||+|.+++ . |..||||.|++.-..+ ++..+..++++
T Consensus 107 ---~--g~-~rvyqIg~~FR~E~~~~--r--H~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 107 ---A--GC-GPVFQLCRSFRNEEMGR--Y--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp ---T--TC-CSEEEEEEEECCCCCBT--T--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---c--CC-CcEEEEEcceeCCCCcc--c--ccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 1 12 29999999999999853 4 8999999999986654 34444444433
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-05 Score=84.18 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.+.||.+|.||.|..... -|+ -++|.+.--+..++|+...+- +...+.. .
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---eg~-----~~~f~~~~~~~~~yL~~Spql-----~~q~l~~-~ 201 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGG-----TELFPMKYFEEDAFLAQSPQL-----YKQIMMA-S 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SCS-----SSCCEEEETTEEEEECSCSHH-----HHHHGGG-T
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---CCC-----ccceeEeeCCccEEEecChHH-----HHHHHHh-c
Confidence 3567889999999999999999999999987531 122 346776655778899854433 2322221 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCccee-eeEeEeeEEEEeCc--hhHHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRV-RRFQQDDAHIFCTV--EQIGDEIVGALD 595 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~-REFtq~d~~if~~~--eqa~~E~~~~l~ 595 (715)
---|+|++|+|||+|.+.. + |- -||||.|++.-..+ ++..+..++++.
T Consensus 202 -g~~rvf~i~~~FR~E~~~t--~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 202 -GLDRVYEIAPIFRAEEHNT--T--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVA 252 (438)
T ss_dssp -TCCEEEEEEEEECCCSSCC--T--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred -CCCceEEEcceEECCCCCC--c--ccccceeeeeeeeccCccHHHHHHHHHHHHH
Confidence 1349999999999998763 2 43 49999999995554 344444444443
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.5e-05 Score=84.40 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEec-Ccccchhh-hhhhCc-ccccC---CCceEEeec---------------------
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVS-PNVYNVKL-WQTSGH-WAHYS---ENMFSFDVE--------------------- 516 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~t-P~L~~~el-~~~sG~-~~~~~---~emy~~~d~--------------------- 516 (715)
..-...+.+.+++.|...||++|.+ |.+++... |..-.. -++-. .+.|.+.+.
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3446778889999999999999876 77765431 222110 01111 122444321
Q ss_pred ---------------CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEe
Q psy10609 517 ---------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC 581 (715)
Q Consensus 517 ---------------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~ 581 (715)
++..+||+.+.|.....+.......+..|+|++++|+|||+|...+ . ++.+|+|.+..+.+
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Da--t--HlpeFhQlegl~~~ 379 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDA--T--HLAEFHQIEGVVAD 379 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCS--S--SCSEEEEEEEEEEE
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCC--C--cCCeEEEEEEEEEC
Confidence 1468999999998888776443223468999999999999998764 3 77899999998775
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCcE-EEEE
Q psy10609 582 TVEQIGDEIVGALDFLRNVYSIFGFT-FNLR 611 (715)
Q Consensus 582 ~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~ 611 (715)
.+- . +..+..+...+++.||+. ++.+
T Consensus 380 ~~v-~---f~dLKg~Le~~l~~lG~~~~rfr 406 (508)
T 3l4g_A 380 HGL-T---LGHLMGVLREFFTKLGITQLRFK 406 (508)
T ss_dssp ESC-C---HHHHHHHHHHHHHTTTCCCCEEE
T ss_pred CCC-C---HHHHHHHHHHHHHHcCCcceEee
Confidence 431 1 223556777889999974 5444
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.8e-05 Score=83.26 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++.++.+.+++.|.+.||.+|.||.|..... .|+ -++|.+.--+..++|+-..+- +......
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~-----~~~F~~~~~g~~~~L~~SpqL-----ylq~l~~-- 195 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGG-----STLFNLDYFGEQSFLTQSSQL-----YLETCIP-- 195 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCT-----TSCCEEEETTEEEEECSCSHH-----HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCc-----hhceeeccCCcccccCCChHH-----HHHHhhh--
Confidence 4578889999999999999999999999977542 222 235766555778889854332 2222211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. -=|+||+|+|||+|.+.. + |-. ||||.|++.-..+ ++..+..++++
T Consensus 196 g-~~rvfeIg~~FR~E~~~t--~--RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 196 T-LGDVFCIAQSYRAEKSRT--R--RHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp H-HCSEEEEEEEECCCSSCC--T--TCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred c-cCceEEEecceecCCCCc--c--ccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 1 238999999999998642 2 555 9999999996654 44444444444
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00014 Score=78.46 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccc----c-CCCceEEeec------------CceEEEecCCh
Q psy10609 466 IYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAH----Y-SENMFSFDVE------------NETYALKPMNC 527 (715)
Q Consensus 466 l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~----~-~~emy~~~d~------------~~~l~LRPt~e 527 (715)
-...+.+.+++.|...||++|.+|.+++... |..-+ ++. . ..+.|.+.+. .+..+||+.+.
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~-~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ts 180 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALN-IPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTT-CCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSST
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhC-CCCCCccccccccEEEcCccccccccccccccccceeeccch
Confidence 3567888889999999999999999977532 23221 111 0 1233545421 25678999888
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc-Cc
Q psy10609 528 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GF 606 (715)
Q Consensus 528 ~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L-Gl 606 (715)
|........ ...|+|++++|+|||+|..... ...||+|.++.+.+.+-. +..+......+++.+ |.
T Consensus 181 p~llr~l~~-----~~~piriFEiGrVFR~d~~d~t----H~pEF~qlegl~~g~~v~----f~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 181 PMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT----HEAVFHQLEGLVVGEGIA----MAHLKGAIYELAQALFGP 247 (350)
T ss_dssp HHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS----CCSEEEEEEEEEEETTCC----HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC----CCChhHEEEEEEECCCCC----HHHHHHHHHHHHHhhcCC
Confidence 888766653 3679999999999998763321 348999999999987421 223455666777776 75
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=81.29 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++.++.+.+++.|...||.+|.||.|..... .|. .++|.+.--+..++|+-..+-..-.+.. +
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg-----~~~f~~~~~~~~~~L~~SpqL~lq~l~~----g-- 220 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGG-----STLFKLQYFNEPAYLTQSSQLYLESVIA----S-- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETTEEEEECSCCHHHHHTTHH----H--
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCc-----cccccccccCCCcccccCHHHHHHHHHh----c--
Confidence 3577889999999999999999999999976432 121 2356654446778888644432221111 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCccee-eeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRV-RRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~-REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ -|+|++|+|||+|.+.. . |- -||||.|++.-..+ ++..+..++++
T Consensus 221 -~-~rVyeig~~FR~E~~~t--~--rH~pEFtmlE~e~af~d~~d~m~~~E~li 268 (456)
T 3m4p_A 221 -L-GKSFCMLSSYRAEQSRT--V--RHLAEYLHLEAELPFISFEDLLNHLEDLV 268 (456)
T ss_dssp -H-SSEEEEEEEECCCSCCC--S--SCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred -c-CcEEEEEhheecCCCCC--C--cchHHHHHhHHHHhcCCHHHHHHHHHHHH
Confidence 2 48999999999998642 1 22 49999999995554 44444444444
|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
Probab=97.75 E-value=1.1e-05 Score=77.10 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=32.2
Q ss_pred CcEEEEeeCCc-ccccCCccccCcChhhHHhhcccC
Q psy10609 327 PTTTAYRCGPL-IDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 327 ~~v~~y~~~~~-~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
..+.+|++|+| +++|.|||+++|+...+|+|..+.
T Consensus 101 ~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~ 136 (157)
T 1v4p_A 101 RILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVR 136 (157)
T ss_dssp CEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEE
T ss_pred CeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEE
Confidence 46899999999 999999999999999999998764
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00033 Score=79.40 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|...||.+|.||.|.... .|. .-..|.+..+ +..++|+-..+-..-.+.. +
T Consensus 176 ~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----gGa----~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv----~- 242 (521)
T 3bju_A 176 FIIRSKIITYIRSFLDELGFLEIETPMMNIIP----GGA----VAKPFITYHNELDMNLYMRIAPELYHKMLVV----G- 242 (521)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SCCCCEEEETTTTEEEEECSCSHHHHHHHHH----T-
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCceeeccC----CCc----cccceeeecccCCcceEeeCCHHHHHHHHHh----c-
Confidence 46788999999999999999999999997531 221 1345655432 6788999655533322222 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. -+.-||||.|++.-..+ ++..+..++++
T Consensus 243 -g~-~rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d~~dlm~l~E~li 290 (521)
T 3bju_A 243 -GI-DRVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYADYHDLMEITEKMV 290 (521)
T ss_dssp -TC-CEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred -Cc-CceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 11 38999999999998764 27899999999986554 44444444444
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00028 Score=81.10 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec---CceEEEecCChHHHHHHHHhh-hc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR-VR 539 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~-~~ 539 (715)
.+++.++.+.+++.|...||.+|+||.|....- .| +.+ |.+... +.-|+|+-..+ . ++.. +.
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~---eG-----Ar~-F~v~~~~~~~~~y~L~qSPQ-l----~kq~Lmv 203 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---EG-----ARD-YLVPSRVHKGKFYALPQSPQ-L----FKQLLMM 203 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SS-----SCC-CEEECSSSTTCEEECCSCSH-H----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---CC-----Ccc-ceecccccCCceEeCccCHH-H----HHHHHHh
Confidence 467889999999999999999999999975321 12 112 554332 34456773222 2 2222 11
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ .+ =|+||+|+|||+|.... - |--||||.|++.-..+ ++..+..++++
T Consensus 204 ~--G~-~rvfqI~~~FR~E~~~t--~--r~pEFT~lE~e~af~d~~dvm~~~E~li 252 (585)
T 1c0a_A 204 S--GF-DRYYQIVKCFRDEDLRA--D--RQPEFTQIDVETSFMTAPQVREVMEALV 252 (585)
T ss_dssp T--TC-CEEEEEEEEECCCCCBT--T--BCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred c--CC-CceEEEeceeecCCCCC--C--cCcccceeeeeecCCCHHHHHHHHHHHH
Confidence 2 12 39999999999998864 2 6679999999985544 45545444444
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=81.77 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..+.+.+++.|...||.+|.||.|..... -|+. +.|.+.--+..++|+-..+- ++..+.. ..
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---egga-----~~F~v~~~~~~~yL~~Spql-----~~k~ll~-~g 309 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---EGGS-----NIFEVKYFDRKAYLAQSPQL-----YKQMAIM-GD 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHH-----HHHHHHT-TT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---CCCc-----ceeEEecCCCceEeccCHHH-----HHHHHHh-cC
Confidence 467789999999999999999999999987541 1222 34443322445677753332 2222211 11
Q ss_pred CCeEEEEeccCcccCCCCCCCCcce-eeeEeEeeEEE-EeCc-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTR-VRRFQQDDAHI-FCTV-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R-~REFtq~d~~i-f~~~-eqa~~E~~~~l 594 (715)
-=|+|++|+|||+|.+.. . | .-||||.|++. |+.. ++.....++++
T Consensus 310 -~~rVfeI~~~FR~E~~~t--~--RHl~EFtmlE~e~af~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 310 -FRKVFEVGPVFRAENSNT--R--RHLTEFEGLDIEMEIVENYHECIDVMEKLF 358 (548)
T ss_dssp -CCEEEEEEEECCCSCCCS--S--SCCSCEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred -cCcEEEEeeeEecCCCCC--C--CcchhhhchhhhhhhhcCHHHHHHHHHHHH
Confidence 259999999999998742 1 2 35999999996 7753 45444444444
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00029 Score=79.50 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=63.8
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
..+|||+..|++....+.. .+.+..|+|++++|+|||.+.. +. + +.+||+|.++.+.+.+.. +..+....
T Consensus 180 ~svLRTsLlPgLL~~lr~N-~~r~~~pvrLFEIG~VFr~d~~~d~--t--h~~Ef~qLagli~G~~vd----f~dLKgil 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHI-ADKLPLPIKLFSIDRCFRREQGEDA--T--RLYTYFSASCVLVDEELS----VDDGKAVA 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTT-TTTSCSSEEEEEEEEEECCCTTCSS--S--CCSEEEEEEEEEECSSCC----HHHHHHHH
T ss_pred ccccCccchhhHHHHHHHH-HhCCCCCeeEEEEeeEEecCccccc--c--ccceeeEEEEEEECCCCC----HHHHHHHH
Confidence 4689999999877666533 3445789999999999998765 43 3 669999999999987422 23356777
Q ss_pred HHHHHHcCcE-EEEEE
Q psy10609 598 RNVYSIFGFT-FNLRL 612 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l 612 (715)
..+++.||+. ++++-
T Consensus 251 E~LL~~LGi~~~r~~~ 266 (534)
T 2du3_A 251 EALLRQFGFENFRFRK 266 (534)
T ss_dssp HHHHGGGTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8899999985 66653
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00034 Score=80.28 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec---CceEEEecCChHHHHHHHHhh-hc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR-VR 539 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~-~~ 539 (715)
.+++.++.+.+++.|...||.||+||.|....- .| +.+ |.+... +.-|+|+-..+ . ++.. +.
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~---eG-----Ar~-F~v~~~~~~~~~y~L~qSPQ-l----~kq~Lmv 209 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---EG-----ARD-FLVPYRHEPGLFYALPQSPQ-L----FKQMLMV 209 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SS-----SCC-CEEECTTSTTEEEECCSCSH-H----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---CC-----CCC-ccccccccCCceeECccCHH-H----HHHHHHH
Confidence 467889999999999999999999999976321 12 112 554332 34455764222 2 2322 11
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ .+ =|+||+|+|||+|.... - |--||||.|++.-..+ ++..+..++++
T Consensus 210 ~--G~-~rvfqI~~~FR~E~~~~--~--r~pEFT~lE~e~af~d~~dvm~~~E~li 258 (580)
T 1l0w_A 210 A--GL-DRYFQIARCFRDEDLRA--D--RQPDFTQLDLEMSFVEVEDVLELNERLM 258 (580)
T ss_dssp T--TC-SEEEEEEEEECCCCCCS--S--CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred h--cc-CCeEEEeceeeCCCCCC--C--cCCCccceeeeecCCCHHHHHHHHHHHH
Confidence 2 12 39999999999998865 2 6679999999985544 44444444443
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00049 Score=72.47 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcc-ccc---CCCceEEeecCceEEEecCChHHHHHHHHhhhc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHW-AHY---SENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~-~~~---~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
.-...+.+.+++.+...||+||.+|.+.+... |..-+.- ++- ..+.+.+. +..+||+++.|.+....+...
T Consensus 53 ~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---e~~vLRtsl~p~ll~~l~~N~- 128 (294)
T 2rhq_A 53 HPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---DEILMRTHTSPVQARTMEKRN- 128 (294)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS---SSEEECSSSHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc---CcceeeccCHHHHHHHHHhcC-
Confidence 34567888889999999999998888876532 2222110 010 01123342 456899999999877766443
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc-Cc
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GF 606 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L-Gl 606 (715)
+..|+|++++|+|||++..... ...||+|.++.+.+.+-. +..+......+++.+ |+
T Consensus 129 --~~~~~riFEiG~Vfr~d~~d~~----h~~Ef~~Le~~~~g~~~d----f~dlKg~le~ll~~l~g~ 186 (294)
T 2rhq_A 129 --GQGPVKIICPGKVYRRDSDDAT----HSHQFTQIEGLVVDKNIK----MSDLKGTLELVAKKLFGA 186 (294)
T ss_dssp --TCSCEEEEEEEEEECCCCCBTT----BCSEEEEEEEEEEESSCC----HHHHHHHHHHHHHHHHCT
T ss_pred --CCCCccEEEEcCEEecCCCCCC----CCChhhEEEEEEECCCCC----HHHHHHHHHHHHHHHhCC
Confidence 4689999999999998653321 336999999999886421 222445566667766 75
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00069 Score=76.70 Aligned_cols=113 Identities=14% Similarity=0.006 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++.++.+.+++.|...||.+|.||.|.... .|- ....|.+... +..++|+-..+-..-.+.. +
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~----gGA----~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v----~ 270 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP----GGA----AAKPFVTHHNALDMEMFLRIAPELYLKRLIV----G 270 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SSCCCEEEETTTTEEEEECSCSHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC----CCC----cccccccccccCCcceecccCHHHHHHHHHh----c
Confidence 356788999999999999999999999997531 221 1234544322 5678888544433222221 1
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. -=|+|++|+|||+|.+.. -+.-||||.|++.-..+ ++..+..++++
T Consensus 271 --G-~~rVyeIg~~FR~E~~~~----rH~pEFtmlE~e~af~d~~dlm~l~E~li 318 (529)
T 4ex5_A 271 --G-FERVFEINRNFRNEGVSP----RHNPEFTMMEFYAAYTDYRWLMDFTERLI 318 (529)
T ss_dssp --T-CSEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred --C-CCcEEEeehheecCCCCC----CcccHhHhhhhhhhcCCHHHHHHHHHHHH
Confidence 1 249999999999998763 27899999999985444 44444444444
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00058 Score=78.51 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 464 AFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
.+++.++...+++.|. +.||.+|.||.|.... ..|- .-|.+.. .+..++|+-..+-..-.+.. +
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st---~~GA------~~F~v~~~~~g~~~~L~qSpql~kq~l~v----~ 214 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT---PGGA------KEFLVPSREPGKFYSLPQSPQQFKQLLMV----G 214 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC---CSSS------CCCEEECSSTTCEEECCSSTTHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC---CCCC------cCceeccccCCcccccccCHHHHHHHHHh----c
Confidence 5778899999999996 7999999999997631 1121 1254433 25677887433322211111 1
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIV 591 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~ 591 (715)
.+ =|+||+|+|||+|.+.. - |.-||||.|++.-..+ ++..+..+
T Consensus 215 --g~-~rvfqi~~~FR~E~~~t--~--r~pEFt~lE~e~af~d~~d~m~~~E 259 (617)
T 4ah6_A 215 --GL-DRYFQVARCYRDEGSRP--D--RQPEFTQIDIEMSFVDQTGIQSLIE 259 (617)
T ss_dssp --SC-SEEEEEEEEECCCSSCS--S--SCSEEEEEEEEEESCCHHHHHHHHH
T ss_pred --cc-CcEEEEEhheecccCCC--C--cCcceecceeeecCCCHHHHHHHHH
Confidence 12 39999999999998764 3 8899999999985443 34333333
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0021 Score=72.60 Aligned_cols=84 Identities=17% Similarity=0.308 Sum_probs=60.3
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. .. . +.+||+|.++-+.+.+- .+..+....
T Consensus 192 ~svLRTsLlPGLL~~vr~N~-~r~~~pvrlFEiGrVFr~D~~~d~--t--h~~ef~qLaglv~G~~v----dF~DLKG~L 262 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLI-KKRKLPLKLFSIDRCFRREQREDR--S--HLMSYHSASCVVVGEDV----SVDDGKVVA 262 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTT-TTSCSSEEEEEEEEECCCCSSCSS--S--CCSCEEEEEEEEECTTC----CHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHH-hcCCCCeEEEEEeeEEecCCcccC--c--CCCcceEEEEEEECCCC----CHHHHHHHH
Confidence 46899999998766555332 345789999999999998763 32 2 45899999999998742 123356777
Q ss_pred HHHHHHcCcE-EEEE
Q psy10609 598 RNVYSIFGFT-FNLR 611 (715)
Q Consensus 598 ~~il~~LGl~-~~v~ 611 (715)
..+++.||+. ++++
T Consensus 263 e~ll~~LGi~~~rfr 277 (549)
T 2du7_A 263 EGLLAQFGFTKFKFK 277 (549)
T ss_dssp HHHHGGGTCCCCCCE
T ss_pred HHHHHHcCCCeEEEE
Confidence 8888888873 4443
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0046 Score=70.54 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vd----F~DLKGvL 269 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (648)
T 2odr_B 270 EGLLSQFGFTNFKFIPD 286 (648)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 655543
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0048 Score=70.52 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vd----F~DLKGvL 269 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (665)
T 2odr_A 270 EGLLSQFGFTNFKFIPD 286 (665)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 665543
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0049 Score=70.56 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vD----F~DLKGvL 269 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEeccEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (685)
T 2odr_D 270 EGLLSQFGFTNFKFIPD 286 (685)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 665544
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0052 Score=70.47 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++.-|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~EfhqLeGlv~G~~vD----F~DLKGvL 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEEeeEEccCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 45899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (701)
T 2odr_C 270 EGLLSQFGFTNFKFIPD 286 (701)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 655543
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0025 Score=68.04 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhh----CcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTS----GHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~s----G~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
.-...+.+.+++.|...||+++.+|.++... -|..- .|-..-..+.|.+. +..+||+.+.|.....+..
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~---e~~vLRThtsp~~lr~l~~--- 180 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD---TTRLLRTQTSGVQIRTMKA--- 180 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS---SSCEECSCTHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC---CCceecccCCHHHHHHHHh---
Confidence 4456788888999999999999999986532 12211 11000001234342 3568999888887766542
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
+..|+|++++|+|||.+. .+ . .+.+|+|.+..+.+.+-. +..+......+++.|
T Consensus 181 --~~~pirifeiGrVyR~d~-d~--t--h~p~fhqlegl~v~~~v~----f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 181 --QQPPIRIIAPGRVYRNDY-DQ--T--HTPMFHQMEGLIVDTNIS----FTNLKGTLHDFLRNF 234 (327)
T ss_dssp --CCSSCCBCCEECCBCSCC-BT--T--BCSBCCEEEEEEEETTCC----HHHHHHHHHHHHHHH
T ss_pred --CCCCeeEEeeccEEecCC-Cc--c--cCCcccEEEEEEECCCCC----HHHHHHHHHHHHHHH
Confidence 468999999999999983 22 1 456799998777654321 222344555556655
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.026 Score=64.83 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+.+.+.+++.+...||+|+.|+.|...+. +..-+.-+. ..+.+.+.+. .+.-+||++.-|++....+... + +.
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~-~-~~ 469 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR-K-MP 469 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTT-T-SC
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHh-c-CC
Confidence 456788889999999999999999998773 333331111 1223333321 2335899999998887665443 2 34
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
.|+|++++|+|||.+.... . ..+|+.+..+.+.+.... +..+-.....+++.||++
T Consensus 470 ~~vrlFEiG~Vf~~d~~~~-~---~~~e~~~la~~~~g~~~~----f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 470 LPLKLFEISDIVIKDSNTD-V---GAKNYRHLCAVYYNKNPG----FEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp SCEEEEEEEEEEEECTTST-T---SEEEEEEEEEEEESSSCC----HHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEeeeEEecCCccc-c---CCccccEEEEEEECCCCC----HHHHHHHHHHHHHHcCCC
Confidence 7999999999999875433 1 247888888877665421 222345566778888875
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.074 Score=53.05 Aligned_cols=137 Identities=11% Similarity=0.173 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 468 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 468 ~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
+++.+.+++.+...||+||.|-.|...+.+..-+..+ .++...+.+. .+.-+||++.-|++....+... +.+.-+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~~ 83 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNA-NRKNAD 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccC--cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHh-cCCCCC
Confidence 4678888889999999999999999988665443211 1123333321 3345899999998877665433 233456
Q ss_pred eEEEEeccCcccCCCCCC--CCcceeeeEeEeeEEEEeCc--h-----hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 546 LRMADFGVLHRNELSGAL--TGLTRVRRFQQDDAHIFCTV--E-----QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l--~GL~R~REFtq~d~~if~~~--e-----qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+|++++|+||+.+..... ..+-..+|..+..+-+-+.. + ....-+-.+....+.++..||++
T Consensus 84 v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 84 LKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp CEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999997653210 00013467777776665531 1 01122334566667777777765
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.028 Score=66.83 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCC-ceEEeec--CceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSFDVE--NETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e-my~~~d~--~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
+..-.+.+.+.+++.+...||+|+.|..|...+.+..-+ + ..+ .+.+.+. .+.-+||++.-|++....+...
T Consensus 491 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~- 565 (795)
T 2rhq_B 491 ELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNV- 565 (795)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHh-
Confidence 334466788889999999999999999999887552221 1 123 3444432 3345899999999887766433
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHH------HHHHHHHHHHHHHHHHcCcEEEE
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIG------DEIVGALDFLRNVYSIFGFTFNL 610 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~------~E~~~~l~~~~~il~~LGl~~~v 610 (715)
+.+..|+|++++|+|||.+.... + . +||+|..+-+.+... ... .-+..+....+.+++.||+++++
T Consensus 566 ~r~~~~vrlFEiG~Vf~~d~~~~--~--~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~ 638 (795)
T 2rhq_B 566 ARKNKDVRLYEIGRVFFGNGEGE--L--P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSY 638 (795)
T ss_dssp HTTCCCEEEEEEEEEEECCCTTS--C--C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCCCEE
T ss_pred cCCCCCeEEEEEeeEEecCCccc--C--c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 34568999999999999644321 1 3 899999888877531 110 12344667788888888875433
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.15 Score=50.81 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
.+++.+.+++.+...||+||.|-.|.+.+.+..-+..+. ++..++.+. .+.-+||++--|++....+... +.+.-
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~--~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~ 82 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNPLSQELNCMRQTLLFGGLETLSHNL-RRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHH-TTTCS
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCc--CCeEEecCCccHHHHHHHHHhHHHHHHHHHHHH-cCCCC
Confidence 356788889999999999999999999886654332110 112222221 3445899999998877665433 23334
Q ss_pred CeEEEEeccCcccCCCCCC--CCcceeeeEeEeeEEEEeC
Q psy10609 545 PLRMADFGVLHRNELSGAL--TGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l--~GL~R~REFtq~d~~if~~ 582 (715)
++|++++|+||+.+..... ..+-..+|..+..+-+-+.
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~ 122 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQ 122 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEB
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCC
Confidence 5999999999997653210 0011347777777666664
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0054 Score=71.75 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=70.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHh-hccCCCcEEEEeeCCcccccCCccccCcChh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILK-EKVNTPTTTAYRCGPLIDLCRGPHVRHTGKI 352 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~-e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~ 352 (715)
++.+++..++..|.++|+++.|+....++.++|.++++ .+++. ...+...+.+|.+|+++++|.|||+++|+..
T Consensus 640 lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~-----l~L~~~~~~~~d~VRVV~IGd~~elCGGTHV~nTgeI 714 (739)
T 2ztg_A 640 PSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFG-----FRLYQGGVPPGRKIRVVQVGDDVQACGGTHCRSTGEI 714 (739)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHC-----GGGGTTCCCCSSEEEEEEETTEEEECCSCCCSBGGGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCC-----HhhhcCCCCCCCeEEEEEECCeeeCcCCcCcccHhHc
Confidence 55567788999999999999999999999999999885 34553 1224567899999999999999999999999
Q ss_pred hHHhhcccC
Q psy10609 353 KAFKVTKYN 361 (715)
Q Consensus 353 eA~eLf~~~ 361 (715)
.+|+|.+..
T Consensus 715 g~fkIls~s 723 (739)
T 2ztg_A 715 GMLKILKVE 723 (739)
T ss_dssp CCEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999998864
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.06 Score=63.84 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
+..-.+.+.+.+++.+...||+|+.|-.|...+.+.. ++. ..+-+.+.+. .+.-+||++.-|++....+... +
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~---l~~-~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~-~ 561 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR---FRL-DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENL-D 561 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH---TTC-CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHh---cCC-CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHh-h
Confidence 3344667888899999999999999999998875532 211 1333444432 3345899999999887766433 3
Q ss_pred cC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh-H-----HHHHHHHHHHHHHHHHHcCcEEEE
Q psy10609 541 WR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ-I-----GDEIVGALDFLRNVYSIFGFTFNL 610 (715)
Q Consensus 541 ~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq-a-----~~E~~~~l~~~~~il~~LGl~~~v 610 (715)
.+ ..|+|++++|+||| + +|+.+..+-+.+.... . ..-+..+....+.+++.||+++++
T Consensus 562 r~~~~~vrlFEiG~Vf~-~-----------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~ 626 (785)
T 1b7y_B 562 LDRPERALLFEVGRVFR-E-----------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRV 626 (785)
T ss_dssp HSCCSCEEEEEEEEEES-S-----------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCCCEE
T ss_pred cCCCCCeEEEEEeeeec-c-----------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 34 58999999999999 2 7888888888776310 0 012334567777888888875444
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.27 Score=54.02 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHc--------CcEEEec-Ccccchh-hhhhhCc-cccc---CCCceEEeecCceEEEecCChHHHHH
Q psy10609 467 YNTLVEFIRSEYRKR--------GFQEVVS-PNVYNVK-LWQTSGH-WAHY---SENMFSFDVENETYALKPMNCPGHCL 532 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~--------Gy~eV~t-P~L~~~e-l~~~sG~-~~~~---~~emy~~~d~~~~l~LRPt~e~~~~~ 532 (715)
...+.+.+++.|... ||+++.+ |.++... -|..-+. -++. ..+.|.+. +..+||..+.|....
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~---~~~vLRThts~~~~~ 126 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN---RTHMLRAHTSAHQWD 126 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS---SSEEECSSGGGGHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec---CCeEEcCCCcHHHHH
Confidence 345666666666665 9999998 7776544 3333221 0111 12334442 357899977777776
Q ss_pred HHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE
Q psy10609 533 IFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 580 (715)
Q Consensus 533 ~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if 580 (715)
.++. ..| |+...|.|||.+...+ . ...+|+|.+.-.+
T Consensus 127 ~l~~------~~~-k~~~~G~VyR~D~~da--~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 127 LLHA------GLD-AFLVVGDVYRRDQIDS--Q--HYPIFHQLEAVRL 163 (415)
T ss_dssp HHHT------TCS-EEEEEEEEECCCCCBT--T--BCSEEEEEEEEEE
T ss_pred HHHH------CCC-CEEEeeeEEeccchhh--h--hhHHhcCCCcEEE
Confidence 6543 236 9999999999996443 2 5688888886555
|
| >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 | Back alignment and structure |
|---|
Probab=92.14 E-value=0.22 Score=42.75 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=45.3
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
+..++|++ +|+.+.....++|+.|+.+.+. +....+++-|||++.+- +.+|..+.+|+++
T Consensus 18 ~~~M~I~v-NGe~~el~~~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 18 GGRHMLQL-NGKDVKWKKDTGTIQDLLASYQ--LENKIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp ----CEEE-TTEEECCSSSCCBHHHHHHHTT--CTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CcceEEEE-CCEEEECCCCCCcHHHHHHHhC--CCCCCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 34567888 8988887762289999999885 34456678899999876 5789999999998
|
| >1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.4 Score=39.08 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred eEEEecCCcE----EeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKI----VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|++ +|+. +.... ++|+.|+.+.+.. ....++.-|||++.+.+.+|..+.+|+++
T Consensus 5 m~i~v-Ng~~~~~~~~~~~-~~tv~~Ll~~l~~--~~~~v~vavN~~~v~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTV-ITDDGKKILESGA-PRRIKDVLGELEI--PIETVVVKKNGQIVIDEEEIFDGDIIEVI 64 (70)
T ss_dssp EEEEE-EETTEEEEEEESS-CCBHHHHHHHTTC--CTTTEEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEEEE-eCccCceeEECCC-CCcHHHHHHHhCC--CCCCEEEEECCEECCCcccCCCCCEEEEE
Confidence 56676 6665 66655 6899999998853 34556788999999999999999999998
|
| >1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 | Back alignment and structure |
|---|
Probab=90.56 E-value=0.45 Score=38.21 Aligned_cols=55 Identities=7% Similarity=0.139 Sum_probs=44.7
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
+|++ +|+.+.... ++|+.|+.+.+.. ....++.-|||+..+- +.+|..+.+|+++
T Consensus 2 ~i~v-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 2 QILF-NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CEEE-SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred EEEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 4677 888888766 7899999998853 3556778899999876 7899999999988
|
| >2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E | Back alignment and structure |
|---|
Probab=88.58 E-value=0.84 Score=36.37 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=43.2
Q ss_pred EEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
|++ +|+.+.. . ++|+.|+.+.+.. ....++.-|||+..+.+ .+|..+.+|+++
T Consensus 2 i~v-Ng~~~~~-~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 2 VWL-NGEPRPL-E-GKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EEE-TTEEECC-T-TCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred EEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 556 8888887 5 6999999998853 34566788999998866 899999999998
|
| >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 | Back alignment and structure |
|---|
Probab=84.16 E-value=0.82 Score=39.16 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=42.3
Q ss_pred CCceeEEcCCCcEEecccCC-CCHHHHHhhhcccccCceEEEEEcCcccccC-C-ccccccCccccccC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWR-TTPYDVAAGISKGLADSTIIAKDWTRANKSR-G-NELCESSQYFSLVS 275 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~-tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld-l-~~~i~~~~~ve~It 275 (715)
+.+|+|++ +|+.++++. + +|+.|+.+.++ +...-||+.||+++.+.+ . .+.+.+.+.++++.
T Consensus 18 ~~~M~I~v-NGe~~el~~-~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 18 GGRHMLQL-NGKDVKWKK-DTGTIQDLLASYQ--LENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ----CEEE-TTEEECCSS-SCCBHHHHHHHTT--CTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CcceEEEE-CCEEEECCC-CCCcHHHHHHHhC--CCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 34567777 678888887 6 99999999875 344556788999987632 1 24566667777765
|
| >2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} | Back alignment and structure |
|---|
Probab=84.12 E-value=0.93 Score=37.51 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=41.0
Q ss_pred eEEEecCCcE---EeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKI---VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|++- |.. +..+. ++|+.|+.+.+.- ....+++.|||+..+.+++++ +.+++++
T Consensus 3 v~Vkl~-g~~~~~~ev~~-g~Tv~dLL~~Lgl--~~~~VvV~vNG~~v~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 3 VTVEVV-GEETSEVAVDD-DGTYADLVRAVDL--SPHEVTVLVDGRPVPEDQSVE-VDRVKVL 60 (74)
T ss_dssp EEEECS-SSSEEEEECST-TCSHHHHHHTTCC--CSSCCCEECCCCCCCTTSSSC-CCCEEEC
T ss_pred EEEEEe-CccceeEEcCC-CCcHHHHHHHcCC--CcceEEEEECCEECCHHHCCC-CCEEEEE
Confidence 455553 443 55554 7899999998864 344457899999999999987 6789988
|
| >2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A | Back alignment and structure |
|---|
Probab=83.10 E-value=1.3 Score=37.09 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=43.6
Q ss_pred EEEecCCcEEeee--cCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 39 QVTLPDGKIVPAK--SWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
+|++ +|+.+... . ++|+.++.+.+.-.- ...++..|||++.+-+ .+|..+.+|+++
T Consensus 2 ~I~v-NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 2 NLTV-NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEE-TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEE-CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 5777 88888776 5 689999999875320 3445678999998775 789999999998
|
| >1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 | Back alignment and structure |
|---|
Probab=82.05 E-value=0.44 Score=41.41 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=35.5
Q ss_pred CCCHHHHHHhhhcCCc-------------CceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA-------------DSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+..... .+.++..|||+.++++.+|..+..|.++
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 5788998888764321 2557889999999999999999999988
|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.43 E-value=4.8 Score=34.84 Aligned_cols=52 Identities=29% Similarity=0.190 Sum_probs=43.0
Q ss_pred EeeecCCCCHHHHHHhhhcCCcCceEEEEE-------cCEEeccccccccCcceeeecc
Q psy10609 48 VPAKSWRTTPYDVAAGISKGLADSTIIAKV-------NGVLWDLDRPLETNCKLELLNK 99 (715)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 99 (715)
+.....++|+.|+|..|...+.+.+.-|.| ||+-..|+..|...--|+++.+
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 444233899999999999999999877776 9999999999997777888843
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 715 | ||||
| d1qf6a4 | 291 | d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th | 9e-85 | |
| d1nyra4 | 291 | d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th | 1e-68 | |
| d1g5ha2 | 290 | d.104.1.1 (A:41-330) The aaRS-like accessory subun | 1e-35 | |
| d1b76a2 | 331 | d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) | 3e-28 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 4e-28 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 2e-08 | |
| d1nj8a3 | 268 | d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) | 1e-27 | |
| d1hc7a2 | 272 | d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) | 5e-20 | |
| d1nj1a3 | 265 | d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS | 2e-15 | |
| d1seta2 | 311 | d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS | 2e-14 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 2e-14 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 3e-10 | |
| d1nyra2 | 59 | d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS | 1e-13 | |
| d1nyra2 | 59 | d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS | 2e-04 | |
| d1tkea1 | 62 | d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS | 2e-13 | |
| d1tkea1 | 62 | d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS | 2e-04 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 9e-09 | |
| d1z7ma1 | 318 | d.104.1.1 (A:6-323) ATP phosphoribosyltransferase | 3e-06 |
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Score = 267 bits (683), Expect = 9e-85
Identities = 126/257 (49%), Positives = 172/257 (66%), Gaps = 1/257 (0%)
Query: 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
RDHRKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + +
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 554
LW+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 555 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613
HRNE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LS
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
TRPEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 674 TIQLDFQLPIRFNLAYV 690
T+QLDF LP R + +YV
Sbjct: 241 TVQLDFSLPSRLSASYV 257
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 224 bits (572), Expect = 1e-68
Identities = 108/263 (41%), Positives = 160/263 (60%), Gaps = 8/263 (3%)
Query: 436 DHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
DHRKIG+E ELF +L G + P GA I + +I + G+ V +P + NV
Sbjct: 1 DHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANV 60
Query: 495 KLWQTSGHWAHYSENMFSFDVEN--ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFG 552
L++TSGHW HY E+MF + E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G
Sbjct: 61 DLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELG 120
Query: 553 VLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLR 611
+HR E SGA++GL RVR +D+HIF +QI +E ++ + +VY FGF ++ R
Sbjct: 121 TMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR 180
Query: 612 LSTR----PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALK 667
LS R EKY + ++WNKAE L+ + + G + E G+ AFYGPK+D+ + A+
Sbjct: 181 LSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMG 240
Query: 668 RPHQCATIQLDFQLPIRFNLAYV 690
+ +T QLDF LP RF+L Y+
Sbjct: 241 KEETLSTAQLDFLLPERFDLTYI 263
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 134 bits (337), Expect = 1e-35
Identities = 36/288 (12%), Positives = 71/288 (24%), Gaps = 54/288 (18%)
Query: 426 EKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQE 485
E L + +R H G Q+L LS F P G + L S ++
Sbjct: 1 EAL-VDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSM-VVFREQ 58
Query: 486 VVSPNVYNVKLWQTSGHWAHYSEN--------------------MFSFDVENETYALKPM 525
V + + + + + + + F ++ + L+
Sbjct: 59 VFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRAT 118
Query: 526 NCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGALTG--LTRVRRFQQDDAHIFCT 582
G + + + R+LP +A GV + T +TRV + F
Sbjct: 119 LLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTP 178
Query: 583 VEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGE 642
+ L + F P + K + +
Sbjct: 179 TRTSSQWLDFWLRHRLLWWRKFAM--------SPSNFSSADCQDELGRKGSKL---YYSF 227
Query: 643 PWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
PW + P + + ++
Sbjct: 228 PWGKEPIETLWNLGDQEL------------------LHTYPGNVSTIQ 257
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Score = 114 bits (285), Expect = 3e-28
Identities = 34/261 (13%), Positives = 68/261 (26%), Gaps = 35/261 (13%)
Query: 459 FQPKGAFIYNTLVEFIRSE--YRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-- 514
+ P G + N L + Y + + + + + + + SGH A +++ M
Sbjct: 34 YGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKA 93
Query: 515 ----------------------VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFG 552
Y + + R+L +A G
Sbjct: 94 RYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIG 153
Query: 553 VLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL 612
RNE++ + RVR F+Q + F + ++ + G
Sbjct: 154 KAFRNEIT-PRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGL------ 206
Query: 613 STRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 672
+R + + A + P +G D+ +
Sbjct: 207 -SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGI 265
Query: 673 ATIQLDFQLPIRFNLAYVKNV 693
L + LAY
Sbjct: 266 TARVLRNEHS-TQRLAYRDPE 285
|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Score = 109 bits (272), Expect = 4e-28
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 34/166 (20%)
Query: 270 YFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTT 329
+S+ DF +E MK IV E ER + +++ E+F + +KL ++
Sbjct: 48 IDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENV 107
Query: 330 TAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLC 389
T Y G DLCRG HV T KIK FK+
Sbjct: 108 TLYSQGDFTDLCRGVHVPSTAKIKEFKLL------------------------------- 136
Query: 390 RGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKR 435
+ YW G ++ + LQR+YG +F D K+LK ++ EE +R
Sbjct: 137 ---STAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKER 179
|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Score = 52.1 bits (124), Expect = 2e-08
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 137 FDNEEASSVFWHSTAHVLGEAMERVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWD 195
+EEA V HSTAH++ A++R+YG GP IE GFYYD +D ++
Sbjct: 2 PGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISS---DDFE 58
Query: 196 KLKKQYDEEIAAKVPEEIQVT 216
+++K + + + E +V
Sbjct: 59 QIEKTMKQIVNENMKIERKVV 79
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Score = 110 bits (275), Expect = 1e-27
Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 14/238 (5%)
Query: 445 ELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA 504
E++ G + P G I E IR+ + G E + P + L
Sbjct: 16 EIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHI 75
Query: 505 HYSENMFSFD------VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
E+ + + AL+P + + V+ +LP+++ R E
Sbjct: 76 KGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYE 135
Query: 559 LSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE 617
+ +AH T E+ +++ A+ + + G + + +
Sbjct: 136 TKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWD 195
Query: 618 KYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA---LKRPHQC 672
K+ G + G + +I +Q
Sbjct: 196 KFPGAEYTMAFDTIFPDGRTMQIATVH----NLGQNFSKTFEIIFETPTGDKDYAYQT 249
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Score = 88.4 bits (218), Expect = 5e-20
Identities = 42/282 (14%), Positives = 89/282 (31%), Gaps = 53/282 (18%)
Query: 417 PDNKQLKEW-EKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIR 475
P ++ EW ++ ++A D+ + G+ +P G I+ + + +
Sbjct: 5 PQSQDFSEWYLEVIQKAELADYGPV-------------RGTIVVRPYGYAIWENIQQVLD 51
Query: 476 SEYRKRGFQEVVSPNVYNVKLWQTSG-HWAHYSENMFSFDVE-----NETYALKPMNCPG 529
+++ G Q P + + H +S + E A++P +
Sbjct: 52 RMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETV 111
Query: 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDE 589
++ +RSWR+LP + +G + R E+ T +Q+ E
Sbjct: 112 IGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEA---- 167
Query: 590 IVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPG 649
E+ L ++ + ++ A G +
Sbjct: 168 --------------------------EEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKF 201
Query: 650 DGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYV 690
GA Y I+ + D + Q T L F++ +
Sbjct: 202 AGAVYTTTIEALMKD--GKALQAGTSHYLGENFARAFDIKFQ 241
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Score = 74.5 bits (182), Expect = 2e-15
Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 41/254 (16%)
Query: 445 ELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSGHW 503
E+ G + P G I ++ +R R +EV+ P + L + + H
Sbjct: 14 EIIDQRYPVKGMHVWMPHGFMIRKNTLKILR-RILDRDHEEVLFPLLVPEDELAKEAIHV 72
Query: 504 AHYSENMF-----SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
+ + ++ AL+P + +F VRS +LP+R R E
Sbjct: 73 KGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYE 132
Query: 559 LSGALTGLTRVRRF--QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRP 616
+ L RVR ++ I T + +++ A++ + ++ G +
Sbjct: 133 -TKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPY-------- 183
Query: 617 EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 676
+ W+K P + G +
Sbjct: 184 --LITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVH---------------------N 220
Query: 677 LDFQLPIRFNLAYV 690
L F + +
Sbjct: 221 LGQTFARTFEIKFE 234
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Score = 72.5 bits (177), Expect = 2e-14
Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 14/268 (5%)
Query: 418 DNKQLKEW-EKLQEEAAKRDHRKIGREQELFFFH--ELS-PGSCFFQPKGAFIYNTLVEF 473
N+++K + DH + + + ++S S + A L+ F
Sbjct: 6 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRF 65
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLI 533
+RGF + P+ K + +GH+ Y + + + + L +
Sbjct: 66 AMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQV--WAIAETDLYLTGTAEVVLNAL 123
Query: 534 FDHRVRSWRELPLRMADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCTVEQIGDEI 590
+ + LPLR A + R+E + GL RV +F + + ++ +
Sbjct: 124 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASL--EAS 181
Query: 591 VGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW-TENPG 649
A L L E G++ + +E L S G T +
Sbjct: 182 DRAFQELLENAEEILRLLELP-YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCS 240
Query: 650 DGAFYGPK-IDITITDALKRPHQCATIQ 676
+ + ++ D R T+
Sbjct: 241 ALLDWQARRANLRYRDPEGRVRYAYTLN 268
|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Escherichia coli [TaxId: 562]
Score = 69.1 bits (168), Expect = 2e-14
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 37/142 (26%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFK--YNPFKLRILKEKVNT-PTTTAYRC 334
D +E M ++ ++ + ++ + E F +K+ IL E + Y
Sbjct: 54 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFH 113
Query: 335 GPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHN 394
+D+CRGPHV + FK+ K
Sbjct: 114 EEYVDMCRGPHVPNMRFCHHFKLMK----------------------------------T 139
Query: 395 SSTYWEGKADAESLQRVYGISF 416
+ YW G ++ + LQR+YG ++
Sbjct: 140 AGAYWRGDSNNKMLQRIYGTAW 161
|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Escherichia coli [TaxId: 562]
Score = 57.1 bits (137), Expect = 3e-10
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 139 NEEASSVFWHSTAHVLGEAMERVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWDKL 197
+EE + HS AH+LG A+++++ + GP I+NGFYYD+ LD E + L
Sbjct: 2 DEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQE---DVEAL 58
Query: 198 KKQYDEEIAAKVPEEIQVTLPDGKIVPAKSW 228
+K+ E + +
Sbjct: 59 EKRMHELAEKNYDVIKKKVSWHEARETFANR 89
|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Score = 63.6 bits (155), Expect = 1e-13
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97
+ PDG TT D+A IS GL + K NG L DL +PLET+ +E++
Sbjct: 2 NIQFPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 59
|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Score = 37.8 bits (88), Expect = 2e-04
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
I + PDG TT D+A IS GL + K
Sbjct: 1 INIQFPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGK 38
|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Escherichia coli [TaxId: 562]
Score = 63.6 bits (155), Expect = 2e-13
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97
+TLPDG +P DVA I GLA + I +VNG L D +E + +L ++
Sbjct: 3 VITLPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII 60
|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (88), Expect = 2e-04
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
+TLPDG +P DVA I GLA + I +
Sbjct: 2 PVITLPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGR 39
|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: AlaX-like domain: Hypothetical protein PH0574 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 52.6 bits (125), Expect = 9e-09
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL 337
+ +E L + VKE P + E+ +E+ +MF + + L + E V
Sbjct: 54 EIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKV-VVIEDWN 112
Query: 338 IDLCRGPHVRHTGKIKAFKVTK 359
++ C H + TG+I K+ K
Sbjct: 113 VNACNKEHTKTTGEIGPIKIRK 134
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Score = 47.4 bits (111), Expect = 3e-06
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSF-DV 515
+ +R + + +QEV+ P+ +L+ E MF F
Sbjct: 10 MTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH 69
Query: 516 ENETYALKPMNCPGHCLIFDHRVRSW 541
E ++ L+ ++ S
Sbjct: 70 EGQSITLRYDFTLPLVRLYSQIKDST 95
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 100.0 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 100.0 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 100.0 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 100.0 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 100.0 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 100.0 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 100.0 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.95 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.94 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 99.92 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 99.78 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 99.77 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 99.75 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 99.75 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 99.75 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 99.71 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.6 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.54 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 99.39 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.35 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.32 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.01 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 98.86 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 98.76 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 97.86 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 97.86 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 97.73 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 97.7 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 97.69 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 97.53 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 97.13 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 97.09 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 96.76 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 93.73 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.48 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 84.57 | |
| d1zud21 | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 82.71 |
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.5e-61 Score=503.96 Aligned_cols=266 Identities=47% Similarity=0.900 Sum_probs=260.2
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~ 514 (715)
||||+||++||||+|++.++|+++|+|.|++++++|++++++++.+.||++|.||.|.+.++|++||||+.|.++||.+.
T Consensus 1 rDH~~lg~~l~lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~ 80 (291)
T d1qf6a4 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS 80 (291)
T ss_dssp TCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEE
T ss_pred CChHHHHHhCCCccccCCCCcceEEccCHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhcccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHH
Q psy10609 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594 (715)
Q Consensus 515 d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l 594 (715)
+++++++|+||+|+.++.+++++++||++||+|++|+++|||+|.+++++||+|+|||+|.|+|+||+++|+.+|+.+++
T Consensus 81 ~~~~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~ 160 (291)
T d1qf6a4 81 SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCI 160 (291)
T ss_dssp ETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred ccchhhcccccCcHHHHHHHHccccchhhcCeeEeecceeeecccccccccccccccceeccceeEecchhhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcE-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 595 DFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 595 ~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
+++.++++.|||+ +.+.+++++++++|+.|.|++++..+.+++.+.|+++.+.+++++|||||+|+++.|+.||.||+|
T Consensus 161 ~~~~~i~~~lGl~~~~v~~s~~~~~~~~~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~k~~~~~~~~~gr~~~~~ 240 (291)
T d1qf6a4 161 RLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240 (291)
T ss_dssp HHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecccccccccccccccccccCCCeEEec
Confidence 9999999999998 777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceeccc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
|+||||++|+||+++|+|+||++++|.
T Consensus 241 tiqld~~~~~rf~~~y~~~dg~~~~pv 267 (291)
T d1qf6a4 241 TVQLDFSLPSRLSASYVGEDNERKVPV 267 (291)
T ss_dssp EEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred eeEEeccchhhhCCEEECCCCCCcCCE
Confidence 999999999999999999999999984
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-60 Score=502.70 Aligned_cols=264 Identities=41% Similarity=0.775 Sum_probs=253.3
Q ss_pred hHHHHhhhcCcceecc-CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe
Q psy10609 436 DHRKIGREQELFFFHE-LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~-~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~ 514 (715)
|||+||++|+||+|.+ +|+|+++|+|+|++++++|++++++++.+.||++|.||.|.+.++|.+||||++|.++||.+.
T Consensus 1 DH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~ 80 (291)
T d1nyra4 1 DHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM 80 (291)
T ss_dssp CHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCE
T ss_pred ChHHHHHhcCCccccccccCcceEEehhHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEe
Confidence 8999999999999987 489999999999999999999999999999999999999999999999999999999999865
Q ss_pred e--cCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHH
Q psy10609 515 V--ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 592 (715)
Q Consensus 515 d--~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~ 592 (715)
. ++++++|+||+||.++.+++++++||++||+|++++++|||+|++++++||+|+|||+|+|+|+||+++|+.+|+.+
T Consensus 81 ~~~~~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~ 160 (291)
T d1nyra4 81 QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKR 160 (291)
T ss_dssp EETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHH
T ss_pred eccccccccccccchhHHHHhhhcEeccccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCCcccHHHHHH
Confidence 4 36789999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcE-EEEEEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCC
Q psy10609 593 ALDFLRNVYSIFGFT-FNLRLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALK 667 (715)
Q Consensus 593 ~l~~~~~il~~LGl~-~~v~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~g 667 (715)
+++++.++++.||++ +.+.+++++ ++++++.+.|++++..+++++++.+.++...+++++|||||+|+++.|++|
T Consensus 161 ~~~~~~~i~~~lGl~~~~v~~~~~d~~~~~~~~~d~e~w~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~k~d~~~~d~~g 240 (291)
T d1nyra4 161 VVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMG 240 (291)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTS
T ss_pred HHHHHHHHhhhcCcCceEEEEecCCCCChhheeechHHhhHHHHHHHHHHHhcCCcceeeecccceeccccceeecCCCC
Confidence 999999999999998 556677663 688999999999999999999999999999999999999999999999999
Q ss_pred CccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 668 RPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 668 r~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+|||||+|+||++|+||+++|+|+||++++|
T Consensus 241 r~~q~~Tiq~df~~~~rf~l~Y~~~dG~~~~P 272 (291)
T d1nyra4 241 KEETLSTAQLDFLLPERFDLTYIGQDGEHHRP 272 (291)
T ss_dssp CCEEEEEEEEESSHHHHTTCCEECTTSCEECC
T ss_pred CeEEEEEEeehhcchhhcCCEEECCCCCCcCC
Confidence 99999999999999999999999999999998
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=100.00 E-value=9.7e-40 Score=339.74 Aligned_cols=230 Identities=16% Similarity=0.233 Sum_probs=202.5
Q ss_pred HHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEee
Q psy10609 437 HRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDV 515 (715)
Q Consensus 437 H~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d 515 (715)
|.+|.+++||+++....+|+++|+|+|++++++|++++++.+.+.||++|.||.|.+.++|.++ ||++.+.++||.+..
T Consensus 8 y~el~~k~~L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~ 87 (268)
T d1nj8a3 8 YSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTH 87 (268)
T ss_dssp HHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEE
T ss_pred HHHHHHHcCCcccCCCCCccEEECccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEec
Confidence 5678899999999765689999999999999999999999999999999999999999999876 578888999998764
Q ss_pred c-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEe-EeeEEEEeCc-hhHHH
Q psy10609 516 E-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ-QDDAHIFCTV-EQIGD 588 (715)
Q Consensus 516 ~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFt-q~d~~if~~~-eqa~~ 588 (715)
. ++.|+||||+||+|+.+++++++||++||+|++++|+|||+|.++. +||+|+|||+ |.|+|+|+.. +++++
T Consensus 88 ~~~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~-~GllR~reF~~~dd~~~~~~~~~~~~~ 166 (268)
T d1nj8a3 88 GGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHT-RPLIRLREIMTFKEAHTAHSTKEEAEN 166 (268)
T ss_dssp SSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCC-BTTTBCSBCSCEEEEEEEESSHHHHHH
T ss_pred cccccchhhhhcccCCCchhHHhhhhhccchhhhheEEeecccccccccccc-ccceeEEEEeeechhceeccccchhhH
Confidence 3 4579999999999999999999999999999999999999997776 8999999997 7778999876 58889
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCC
Q psy10609 589 EIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKR 668 (715)
Q Consensus 589 E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr 668 (715)
++..+++.+.++++.||+++++.....++.. .-...++++...++.|+
T Consensus 167 ~~~~~~~~y~~if~~l~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~g~ 214 (268)
T d1nj8a3 167 QVKEAISIYKKFFDTLGIPYLISKRPEWDKF--------------------------------PGAEYTMAFDTIFPDGR 214 (268)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEECTTSCC--------------------------------TTCSEEEEEEEECTTSC
T ss_pred HHHHHHHHHHHHHHhcCcceeeccccccccc--------------------------------cchhcccchhhhhhccc
Confidence 9999999999999999999776654432211 11123568889999999
Q ss_pred ccccccc-eeccCcccccCcEEEcCCCceecc
Q psy10609 669 PHQCATI-QLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 669 ~~q~~Ti-QlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
.++++|+ |++.++|+|||++|+|+||++++|
T Consensus 215 ~~e~~t~~~lg~~~s~~f~l~y~~~dg~~~~~ 246 (268)
T d1nj8a3 215 TMQIATVHNLGQNFSKTFEIIFETPTGDKDYA 246 (268)
T ss_dssp EEEEEEEEEEETHHHHHTTCEEECTTSSEEEC
T ss_pred cEEEeeecccCCCcChhcCCEEECCCCCCcce
Confidence 9999999 799999999999999999999888
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=100.00 E-value=5.6e-39 Score=339.27 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=216.1
Q ss_pred ChhhhHHHHHHHH-HHhhhhHHHHhhhcCcceecc---CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccc
Q psy10609 418 DNKQLKEWEKLQE-EAAKRDHRKIGREQELFFFHE---LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYN 493 (715)
Q Consensus 418 ~~~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~---~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~ 493 (715)
++.+++.|+..++ +++++||++||++++|+|++. +|+|++++.+.+++|.++|.+|+.+.+.+.||++|.+|.|.+
T Consensus 6 ~n~~i~~~G~~~~~~f~~k~H~el~~~l~l~d~~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~ 85 (311)
T d1seta2 6 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAR 85 (311)
T ss_dssp GCEEEEEESCCCCCSSCCCCHHHHHHHHTCBCTTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEE
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHcCCcchhhceeecCceEEEECHHHHHHHHHHHHHHHhhhcccceEEeechhhc
Confidence 4666788887777 789999999999999999643 278889999999999999999999999999999999999999
Q ss_pred hhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceee
Q psy10609 494 VKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVR 570 (715)
Q Consensus 494 ~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~R 570 (715)
.+++.++||++++.++||.+. +++++|+||+|++++.++++++.++++||+|++++++|||+|++. .++||+|+|
T Consensus 86 ~~~~~~~G~~p~f~~~~y~~~--~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~Rvh 163 (311)
T d1seta2 86 EKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVH 163 (311)
T ss_dssp HHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCS
T ss_pred cchhhhccccccccccccccc--ccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhc
Confidence 999999999999999999874 457899999999999999999999999999999999999999965 368999999
Q ss_pred eEeEeeEEEEeC--chhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 571 RFQQDDAHIFCT--VEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 571 EFtq~d~~if~~--~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
||+++|+|++|. ++++..++.+++..++++++.|||||+++....++.
T Consensus 164 QF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~dl------------------------------ 213 (311)
T d1seta2 164 QFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDM------------------------------ 213 (311)
T ss_dssp EEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTS------------------------------
T ss_pred ccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhccccCCCC------------------------------
Confidence 999999999996 468889999999999999999999999875443221
Q ss_pred CCCccccceeeEEe-ecCCCCccccccce--eccCcccccCcEEEcCCCceecccccccccC
Q psy10609 649 GDGAFYGPKIDITI-TDALKRPHQCATIQ--LDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 649 g~~afYgpkid~~~-~D~~gr~~q~~TiQ--lDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
+.+++ -+.|+.+ ..+.|+-+++|+++ .||| |+||+|+|.++||+.++| +|||+-
T Consensus 214 ~~~a~--~~~diE~w~P~~~~y~Ev~S~sn~~d~q-srRl~i~y~~~dg~~~~~--htlngT 270 (311)
T d1seta2 214 GPGKW--RQVDIEVYLPSEGRYRETHSCSALLDWQ-ARRANLRYRDPEGRVRYA--YTLNNT 270 (311)
T ss_dssp CTTCS--EEEEEEEEEGGGTEEEEEEEEEECTTHH-HHHHTCEEECTTSCEEEC--EEEEEE
T ss_pred chHHH--hhhHHHHhHhhcCCcccccCceecchHH-HhhcccEEECCCCCEEeE--EEecCc
Confidence 11222 2445554 34467777888766 4777 999999999999998765 788864
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=100.00 E-value=2.6e-37 Score=320.51 Aligned_cols=229 Identities=17% Similarity=0.226 Sum_probs=194.7
Q ss_pred HHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhhCcccccCCCceEEee
Q psy10609 437 HRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSGHWAHYSENMFSFDV 515 (715)
Q Consensus 437 H~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~sG~~~~~~~emy~~~d 515 (715)
+.+|.++.+|+|+.+.++|++.|+|+|++++++|++++++.+ +.||++|.||.|.+.+ +|+.||||++|.++||.+..
T Consensus 6 y~el~~k~~lid~~~~~~G~~~~lP~G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~ 84 (265)
T d1nj1a3 6 FHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTH 84 (265)
T ss_dssp HHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEE
T ss_pred HHHHHHHcCCcccCCCCCceEEEcccHHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeec
Confidence 467889999999988789999999999999999999998765 5699999999988775 88999999999999999863
Q ss_pred c-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeE-eeEEEEeCc-hhHHH
Q psy10609 516 E-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ-DDAHIFCTV-EQIGD 588 (715)
Q Consensus 516 ~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq-~d~~if~~~-eqa~~ 588 (715)
. ++.|+||||+||+++.+++++++||++||+|++|+|+|||+|.++. +||+|+|||+| .+.++|+.. +++++
T Consensus 85 ~~~~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~~~-~Gl~R~reF~~~~d~~~~~~~~~~~~~ 163 (265)
T d1nj1a3 85 GGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHT-RPLIRVREITTFKEAHTIHATASEAEE 163 (265)
T ss_dssp ETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCC-BTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred cCccccceeEEeecccccceEEeeeeeeccccccceEEEeeccceeeecccC-cCCEEEEEEEEeccceeecCCHHHHHH
Confidence 2 5679999999999999999999999999999999999999998876 89999999975 566666554 58889
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCC
Q psy10609 589 EIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKR 668 (715)
Q Consensus 589 E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr 668 (715)
++..+++.+.++++.+|+++++......+. +.....++++......|+
T Consensus 164 e~~~~~~~~~~~~~~l~l~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~g~ 211 (265)
T d1nj1a3 164 QVERAVEIYKEFFNSLGIPYLITRRPPWDK--------------------------------FPGSEYTVAFDTLMPDGK 211 (265)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEECCTTTS--------------------------------CTTCSEEEEEEEECTTSC
T ss_pred HhhhhHHHHHHHHhhcCCceeEEEccCccc--------------------------------ccccccccchhhcccccc
Confidence 999999999999999999977654332111 112234566677777788
Q ss_pred ccccccc-eeccCcccccCcEEEcCCCceecc
Q psy10609 669 PHQCATI-QLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 669 ~~q~~Ti-QlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
.++++++ +++.++|+||||+|.|+||+++++
T Consensus 212 ~~e~~~~~~lg~~~s~~f~i~y~d~~g~~~~~ 243 (265)
T d1nj1a3 212 TLQIGTVHNLGQTFARTFEIKFETPEGDHEYV 243 (265)
T ss_dssp EEEEEEEEEEETHHHHHHTCEEECTTSCEEEC
T ss_pred cceecchhhcchhhHHhcCCEEECCCCCEEEE
Confidence 8888888 688888999999999999999865
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.4e-35 Score=307.14 Aligned_cols=227 Identities=18% Similarity=0.275 Sum_probs=191.1
Q ss_pred HHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhC-cccccCCCceEEeec
Q psy10609 438 RKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG-HWAHYSENMFSFDVE 516 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG-~~~~~~~emy~~~d~ 516 (715)
.+|.++.+|+|++++ +|++.|+|.|++++++|++++++++.+.||++|.||.|.+.++|.++| |++.+.++||.+.+.
T Consensus 15 ~~l~~~~~l~d~~~~-~G~~~~lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~ 93 (272)
T d1hc7a2 15 LEVIQKAELADYGPV-RGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHA 93 (272)
T ss_dssp HHHHHHTTSEEECSS-TTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEE
T ss_pred HHHHHHcCCcccCCC-CCeEEECccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeecc
Confidence 367788999998764 799999999999999999999999999999999999999999998887 789999999987653
Q ss_pred -----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHH
Q psy10609 517 -----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEI 590 (715)
Q Consensus 517 -----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~ 590 (715)
++.++|+||+|++++.+++++++||++||+|++++++|||+|+++. |+.|.|+|.+.++|.|+.. ++++.++
T Consensus 94 ~~~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~--g~~r~r~~~~~~~~~~~~~~~~~~~~~ 171 (272)
T d1hc7a2 94 GGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTR--PFLRTSEFLWQEGHTAHATREEAEEEV 171 (272)
T ss_dssp SSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCB--TTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ccccccchhhcccccccceeehhhceeccccccceeeeecccccccccccc--cccceEEEEEEhhhhhhcccccchhHH
Confidence 4679999999999999999999999999999999999999999995 8899999999999999886 5888888
Q ss_pred HHHHHHHHHHHHHcCcE-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCc
Q psy10609 591 VGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 669 (715)
Q Consensus 591 ~~~l~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~ 669 (715)
..+...+..++..++.. ..+...+.++. +.++.+ +.++...++.||.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~--~~~~~~~~~~~r~ 219 (272)
T d1hc7a2 172 RRMLSIYARLAREYAAIPVIEGLKTEKEK------------------------------FAGAVY--TTTIEALMKDGKA 219 (272)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCTTTS------------------------------CTTSSE--EEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHhcchhhhcCccccccc------------------------------ccccce--eccccccccCCCC
Confidence 88999999999887665 44444433221 122333 4578889999999
Q ss_pred cccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 670 HQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 670 ~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+++||+| +|+++|+||+|+|+|+||+.+++
T Consensus 220 ~Ev~t~~~l~~~~s~r~~i~Y~d~dg~~~~v 250 (272)
T d1hc7a2 220 LQAGTSHYLGENFARAFDIKFQDRDLQVKYV 250 (272)
T ss_dssp EEEEEEEEEETHHHHHTTCEEECTTSCEEEC
T ss_pred EEcccceecccccchhcCCEEECCCCCEEEE
Confidence 9999999 89999999999999999998765
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.5e-37 Score=328.57 Aligned_cols=249 Identities=15% Similarity=0.097 Sum_probs=204.4
Q ss_pred HHhhhcCcceecc-C-C--CeeEEeCcccHHHHHHHHHHHHHHH--HHcCcEEEecCcccchhhhhhhCcccccCCCceE
Q psy10609 439 KIGREQELFFFHE-L-S--PGSCFFQPKGAFIYNTLVEFIRSEY--RKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~-~-~--~G~~~~lP~G~~l~~~L~~~i~~~~--~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~ 512 (715)
.|+++-+.+.... + | +|+++|+|.|++|+++|+++|++.+ .+.||.+|.||+|.+.++|++||||+.|.+.||.
T Consensus 10 ~~~krrgf~~~s~~iy~g~~G~y~ygP~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~ 89 (331)
T d1b76a2 10 ALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD 89 (331)
T ss_dssp HHHHHTTSEEETTGGGSCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECB
T ss_pred HHHHHcCCccccchhcCCceeEeccCCcHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceee
Confidence 4677777654332 1 2 8999999999999999999999987 4789999999999999999999999999999885
Q ss_pred Eee-----------------------cCceEEEec-CChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcce
Q psy10609 513 FDV-----------------------ENETYALKP-MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTR 568 (715)
Q Consensus 513 ~~d-----------------------~~~~l~LRP-t~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R 568 (715)
..+ ++...+||| |+|+.++.+++....||++||++++|+|+|||+|.+++ +||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~-~gl~R 168 (331)
T d1b76a2 90 NAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR-NFIFR 168 (331)
T ss_dssp SSSCBCCCCCEEEECCEEEECSSSCCGGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCC-TTTTS
T ss_pred ecccccccCccchhhccccccccccccCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccccc-ccccc
Confidence 321 234455665 66666666777778899999999999999999999998 99999
Q ss_pred eeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC--CCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q psy10609 569 VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP--EKYLGELEVWNKAEKQLEASLNSFGEPWT 645 (715)
Q Consensus 569 ~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~--ek~~gd~e~w~~a~~~L~~~L~~~g~~~~ 645 (715)
+|||+|.|+|+||+++|+.+++...+..+...+..+|+. ++++..... +...+..+.|+ .+.+.+|.
T Consensus 169 vReFtq~D~~~F~~~~q~~~~~~~~~~~~~~~~~~~g~~~~~lr~~~~~~~e~a~~~~~~~~----------~e~~~~~g 238 (331)
T d1b76a2 169 VREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVD----------ILYRFPHG 238 (331)
T ss_dssp CSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTSSCTTEEEEEE----------EEEEETTE
T ss_pred cchhhhhhhhhhcCCcchhHHHHHHHHHHHHHHHHhhccchheeeeeeccchhhhhhHHHHH----------HHhcCCCc
Confidence 999999999999999999999999999999999999985 666655543 33333344442 23455677
Q ss_pred ccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEc-CCCceecc
Q psy10609 646 ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVK-NVRAQTHE 699 (715)
Q Consensus 646 ~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~-~dg~~~~~ 699 (715)
..+++|++|||++|++..|+.|+.|+++|.|+|+. +.++++.|.| ++|++..|
T Consensus 239 ~~e~eg~~y~~~~Dl~~~~~~~~~~~~~~~q~d~~-~s~~~l~~~d~e~g~k~~P 292 (331)
T d1b76a2 239 SLELEGIAQRTDFDLGSHTKDQEALGITARVLRNE-HSTQRLAYRDPETGKWFVP 292 (331)
T ss_dssp EEEEEEEEEECSHHHHHTCTTTTTTTCCSCCCCCS-SCSSCCCEECSSSSCEECC
T ss_pred cccchhhhccccccccccccccccccceeeeeccC-CcccceEEEecCCCeEEec
Confidence 78889999999999999999999999999999966 7777888886 55666566
|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=2e-28 Score=239.31 Aligned_cols=178 Identities=39% Similarity=0.687 Sum_probs=162.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCcee
Q psy10609 136 KFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQ 214 (715)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~ 214 (715)
|+++++|.++||||++|||++|++++||+ .++.||++++|||||+..+.+
T Consensus 1 T~~~~~~l~i~~HSathlL~~Al~~~~~~~~~~~G~~~~~gf~~Df~~~~~----------------------------- 51 (179)
T d1nyra3 1 TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQN----------------------------- 51 (179)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSC-----------------------------
T ss_pred CCcCHHHHHHHhHhHHHHHHHHHHHHCCCcEEEEeeeeccceEEEEeeccc-----------------------------
Confidence 57999999999999999999999999986 689999999999999976443
Q ss_pred EEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcC
Q psy10609 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQ 294 (715)
Q Consensus 215 I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~ 294 (715)
++.+++..|+..|.++|+++.
T Consensus 52 -----------------------------------------------------------lt~edl~~IE~~m~~iI~~~~ 72 (179)
T d1nyra3 52 -----------------------------------------------------------ISSDDFEQIEKTMKQIVNENM 72 (179)
T ss_dssp -----------------------------------------------------------CCSTTHHHHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999
Q ss_pred CCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCC
Q psy10609 295 PFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNT 374 (715)
Q Consensus 295 P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~ 374 (715)
|+.+..++.++|.++|..++++.+++++......+++|.+|+|+|+|.|||+++|+...+|+|..
T Consensus 73 ~i~~~~~~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g~~~dlC~G~Hv~~T~~I~~fki~~--------------- 137 (179)
T d1nyra3 73 KIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLS--------------- 137 (179)
T ss_dssp CEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEE---------------
T ss_pred ceEEEEcCHHHHHHHhccCccceehhhhcCCCCcEEEEeeCCEEEecCCCCCccccccCceEEEE---------------
Confidence 99999999999999998888889999876555678899999999999999999999999988877
Q ss_pred CceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhh
Q psy10609 375 PTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKR 435 (715)
Q Consensus 375 ~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~r 435 (715)
++++||+|..++-+|+|++|.+|++++.|++|++..+|+++|
T Consensus 138 -------------------~sgay~~g~~~~~~L~ri~G~a~~~~~~L~~~l~~leEa~~R 179 (179)
T d1nyra3 138 -------------------TAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKER 179 (179)
T ss_dssp -------------------EEEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred -------------------eecccccCccchhheeeeHhhccCCHHHHHHHHHHHHHHhcC
Confidence 566789999999999999999999999999999999999875
|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.7e-27 Score=228.94 Aligned_cols=157 Identities=31% Similarity=0.616 Sum_probs=127.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEE
Q psy10609 138 DNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVT 216 (715)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~ 216 (715)
.++||.+|||||+||||++|++++||+ .+.+||++++|||||+..+..
T Consensus 1 kd~egl~v~rhS~ahlLa~Av~~l~p~~kl~~g~~~~~GfyyD~~~~~~------------------------------- 49 (162)
T d1tkea2 1 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT------------------------------- 49 (162)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEeccccCCeEEEEeeccCC-------------------------------
Confidence 368999999999999999999999975 899999999999999975433
Q ss_pred cCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCC
Q psy10609 217 LPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPF 296 (715)
Q Consensus 217 lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~ 296 (715)
++.+++..++..|.++|.++.|+
T Consensus 50 ---------------------------------------------------------~~~edl~~ie~~m~~ii~~~~~~ 72 (162)
T d1tkea2 50 ---------------------------------------------------------LTQEDVEALEKRMHELAEKNYDV 72 (162)
T ss_dssp ---------------------------------------------------------CCHHHHHHHHHHHHHHHTTCCBC
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHHhcCCc
Confidence 45567888999999999999999
Q ss_pred ceeecCHHHHHHHHhcCh--hHHHHHhhcc-CCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccC
Q psy10609 297 ERLEMKKEDLIEMFKYNP--FKLRILKEKV-NTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVN 373 (715)
Q Consensus 297 ~r~~vs~eda~~If~~~~--~m~eLI~e~~-pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~ 373 (715)
.+..++.+++.+++..+. .+.+++.... +...+++|+||+|+|+|+|||+++|+..++|+|.+
T Consensus 73 ~~~~~s~~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~y~~g~~~dlc~Gphv~sTg~ik~FkL~~-------------- 138 (162)
T d1tkea2 73 IKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK-------------- 138 (162)
T ss_dssp EEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEE--------------
T ss_pred eEEEechHHHHHHHHHhhcchhhheeeccccccccceeeccCceEeecCCCccccCcccceEEEEE--------------
Confidence 999999999999998643 3444554432 34456777788888888888888877777777776
Q ss_pred CCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccC
Q psy10609 374 TPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISF 416 (715)
Q Consensus 374 ~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~ 416 (715)
++++||+|+.++.+|||+||++|
T Consensus 139 --------------------vsgaYw~gd~~n~~LqRiyg~af 161 (162)
T d1tkea2 139 --------------------TAGAYWRGDSNNKMLQRIYGTAW 161 (162)
T ss_dssp --------------------EEEEEGGGCTTSCEEEEEEEEEC
T ss_pred --------------------echhhcCCCCCCcccEEEEEEEe
Confidence 66777888888888888887776
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=3.5e-27 Score=246.85 Aligned_cols=218 Identities=12% Similarity=0.026 Sum_probs=158.0
Q ss_pred Cee-EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE-------------------
Q psy10609 454 PGS-CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF------------------- 513 (715)
Q Consensus 454 ~G~-~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~------------------- 513 (715)
+|+ ++|.|.|+.|+++|+++|++.+.. ...+|.+|...+.++|..|||+..+...+...
T Consensus 27 ~g~~~dyGP~G~~Lk~ni~~~w~~~~v~-~~~~v~~~d~~~~~~~~~sgh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (290)
T d1g5ha2 27 SGCHARFGPLGVELRKNLASQWWSSMVV-FREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFL 105 (290)
T ss_dssp HCCSCCBCHHHHHHHHHHHHHHHHHHTT-TCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHHh-ccCceeeccccccccCCCccccchhhhccccccccccccccchhhhhhcce
Confidence 455 499999999999999999998754 33478999999999999999988775432110
Q ss_pred -eecCceEEEecCChHHHHHHHHhhh-cccCCCCeEEEEeccCcccCCCCC--CCCcceeeeEeEeeEEEEeCchhHHHH
Q psy10609 514 -DVENETYALKPMNCPGHCLIFDHRV-RSWRELPLRMADFGVLHRNELSGA--LTGLTRVRRFQQDDAHIFCTVEQIGDE 589 (715)
Q Consensus 514 -~d~~~~l~LRPt~e~~~~~~~~~~~-~s~~~LPlrl~~~g~~FR~E~~~~--l~GL~R~REFtq~d~~if~~~eqa~~E 589 (715)
...+...+||||+|+++...|++.. .++++||++++|+|+|||+|.++. .+||+|+|||+|+|+|+||.|+++.++
T Consensus 106 ~~~~~~~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~ 185 (290)
T d1g5ha2 106 ENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQW 185 (290)
T ss_dssp HHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHH
T ss_pred eccccccceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCCcchHHH
Confidence 0113457899999999999998854 688999999999999999887652 279999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcE-EEEEEccCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCC
Q psy10609 590 IVGALDFLRNVYSIFGFT-FNLRLSTRPEKYL-GELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALK 667 (715)
Q Consensus 590 ~~~~l~~~~~il~~LGl~-~~v~l~~~~ek~~-gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~g 667 (715)
+..++....++++.|||+ -.+++...+..+. .+.+.| |..|.-...+ .
T Consensus 186 ~~~~~~~~~~~~~~lGi~~~~~~~~~~~~~~a~~~~die--------------------------~~~p~g~~Ei----~ 235 (290)
T d1g5ha2 186 LDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLY--------------------------YSFPWGKEPI----E 235 (290)
T ss_dssp HHHHHHHHHHHHHTTCSSGGGEEEEEEECTTSCEEEEEE--------------------------EEETTEEEEE----E
T ss_pred HHHHHHHHHHHHHHcCCChhheeecccchhhcccceeeE--------------------------EcCCCCEEEE----E
Confidence 999999999999999997 3334433221110 000000 1112111111 1
Q ss_pred CccccccceeccCcccccCcEEEcCCCceeccccccc
Q psy10609 668 RPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTL 704 (715)
Q Consensus 668 r~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~ 704 (715)
..|++++.|+. +++++++++|.|+||++++. |+.+
T Consensus 236 g~~~r~D~dl~-~~~~~~~l~y~~~d~~~k~v-P~vI 270 (290)
T d1g5ha2 236 TLWNLGDQELL-HTYPGNVSTIQGRDGRKNVV-PCVL 270 (290)
T ss_dssp EEEEEESHHHH-HHSTTCGGGSCEEETTEEEC-CEEE
T ss_pred EecCChhhhhh-hcccccCCEEEccCCCeeEe-eEEE
Confidence 34778888875 56899999999999998864 4433
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=3.7e-19 Score=189.91 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=138.4
Q ss_pred HHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHH--HcCcEEEecCcccchhhhhhhCcccccCCCce-
Q psy10609 439 KIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYR--KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF- 511 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~--~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy- 511 (715)
.|.++-+.+.... + .+|++||.|.|+.|+++|++.|++.+. +-+..+|.+|+|.+.++|++|||.+.|.|-|-
T Consensus 10 ~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv~~F~D~mv~ 89 (394)
T d1atia2 10 ALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD 89 (394)
T ss_dssp HHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEE
T ss_pred HHHHhcCCcccChhhccCcccccCcCccHHHHHHHHHHHHHHHHhhccCCEEEecccccCCHHHhhhcCCCCCCcccccc
Confidence 4555556554332 1 289999999999999999999999875 46788999999999999999999887764332
Q ss_pred --------------------------------------------------------------------------------
Q psy10609 512 -------------------------------------------------------------------------------- 511 (715)
Q Consensus 512 -------------------------------------------------------------------------------- 511 (715)
T Consensus 90 c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t~~~~FNLMF 169 (394)
T d1atia2 90 NRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMF 169 (394)
T ss_dssp C--------------------------------------------------------------------CCCCEEEECBE
T ss_pred cCCCCceecchhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhChHhhhhhHHhhCCCCCCCCCcCCcCccchhhhhc
Confidence
Q ss_pred EEeec-----CceEEEecCChHHHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh
Q psy10609 512 SFDVE-----NETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ 585 (715)
Q Consensus 512 ~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq 585 (715)
+...+ +...+|||+++.++...|++...+.+ .||+-++|+|++||||.+++ .||+|+|||+|.|++.|+.|+.
T Consensus 170 ~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr-~~l~R~REF~q~EiE~Fv~P~~ 248 (394)
T d1atia2 170 QDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVRPGE 248 (394)
T ss_dssp EEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCC-TGGGSCSEEEEEEEEEEECGGG
T ss_pred cccccccccccceeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcc-cCCcccccceeeeeEEEEeCCc
Confidence 11111 12578999999999999988766554 79999999999999999998 8999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHcCcE
Q psy10609 586 IGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 586 a~~E~~~~l~~~~~il~~LGl~ 607 (715)
....+...+......+.++||+
T Consensus 249 ~~~~~~yw~~~~~~f~~~lGi~ 270 (394)
T d1atia2 249 DEYWHRYWVEERLKWWQEMGLS 270 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhcCC
Confidence 8887777788888899999985
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=99.77 E-value=7.4e-19 Score=184.88 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=127.8
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhC-cc-cccCCCceEEeec-CceEEEecCChHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG-HW-AHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG-~~-~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
+.|+.+++|..+..++.|++.+++.|.++||++|.||.+++.++|...+ .. +...++||++.|. |+.++|||..+++
T Consensus 4 P~g~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~ 83 (318)
T d1z7ma1 4 PEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLP 83 (318)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHH
T ss_pred CCchhhhCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCCccEEEeeccccch
Confidence 6799999999999999999999999999999999999999999997543 22 2345789999875 8999999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++.. ...+.|.|++|+|+|||+|.++. | |.|||+|+++++||.++ .+++| ++.++.++++.||++
T Consensus 84 iaR~~~~---~~~~~~~r~~Y~g~vfR~~~~~~--~--r~rE~~Q~g~EiiG~~~~~ad~E---ii~l~~e~l~~lgi~~ 153 (318)
T d1z7ma1 84 LVRLYSQ---IKDSTSARYSYFGKIFRKEKRHK--G--RSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLNK 153 (318)
T ss_dssp HHHHHHT---CCSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHH---HHHHHHHHHHHHTCSS
T ss_pred HHHHHHH---hcccCCcccccccceeEEccccc--c--ccchhhhhheeccccchhhHHHH---HHHHHHHHHHHhhhcc
Confidence 9887753 23578999999999999999874 7 99999999999999975 66766 688999999999997
Q ss_pred EEEEEccC
Q psy10609 608 FNLRLSTR 615 (715)
Q Consensus 608 ~~v~l~~~ 615 (715)
+.+.++++
T Consensus 154 ~~i~i~~~ 161 (318)
T d1z7ma1 154 TVFEIGSA 161 (318)
T ss_dssp EEEEEEEH
T ss_pred ccccchhh
Confidence 99999885
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.75 E-value=3.2e-18 Score=180.48 Aligned_cols=157 Identities=17% Similarity=0.335 Sum_probs=123.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCc-ccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGH-WAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~-~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.+.|++|++|..+..++.|++.+.+.++++||++|.||.|++.+++.. .|. .+...++||.+.+. ++.++|||..++
T Consensus 4 lP~G~rD~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~~~~~~lr~d~t~ 83 (325)
T d1qe0a2 4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTA 83 (325)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhccccccccccccccc
Confidence 478999999999999999999999999999999999999999999864 342 33456789999876 788999997776
Q ss_pred HHHHHH-HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 529 GHCLIF-DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 529 ~~~~~~-~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
++++.+ .....+....|+|+||+|+|||++.++. | |.|||+|+++++|+.+. .+++| ++.++.++++.+|+
T Consensus 84 ~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~--~--~~rE~~Q~G~EiiG~~~~~ad~E---ii~l~~~~l~~~g~ 156 (325)
T d1qe0a2 84 AVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK--G--RYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGL 156 (325)
T ss_dssp HHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTC
T ss_pred cHHHHHHhhccccccccchhhheecceeeeccccC--C--ccceeeecceeecCCcCcHHHHH---HHHHHHHHHHhhCC
Confidence 666544 4444555679999999999999999884 7 99999999999999975 77777 68899999999999
Q ss_pred E-EEEEEccC
Q psy10609 607 T-FNLRLSTR 615 (715)
Q Consensus 607 ~-~~v~l~~~ 615 (715)
. +.+.+++.
T Consensus 157 ~~~~i~i~~~ 166 (325)
T d1qe0a2 157 KHLKLVINSV 166 (325)
T ss_dssp CCEEEEEEEC
T ss_pred cCcceeeccc
Confidence 6 88888765
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=3.5e-18 Score=180.32 Aligned_cols=157 Identities=19% Similarity=0.259 Sum_probs=129.9
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcc-cccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHW-AHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~-~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
..+|++|++|..+..++.|++.+.+.|.++||++|.||.|++.+++.. .|.. +...+.||.+.+. |+.++|||..++
T Consensus 4 ~~kG~rD~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~ 83 (324)
T d1h4vb2 4 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTA 83 (324)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEEEECCCSHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccCCccccccccccc
Confidence 458999999999999999999999999999999999999999998864 4432 2356789999886 899999999988
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++........+.|+|+||+|+|||++.++. | |.|||+|+++++++.+. .+++| ++.++.++++.+|+.
T Consensus 84 ~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~~--g--r~re~~Q~g~EiiG~~~~~ad~E---ii~l~~~~l~~l~~~ 156 (324)
T d1h4vb2 84 AMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQK--G--RYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLR 156 (324)
T ss_dssp HHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC--------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhhhhchhhhheeeCcccccCcccC--C--CcceeccccccccCCCChHHHHH---HHHHHHHHHHHhccc
Confidence 8888776544444468999999999999999984 8 99999999999999874 77777 578999999999997
Q ss_pred -EEEEEccC
Q psy10609 608 -FNLRLSTR 615 (715)
Q Consensus 608 -~~v~l~~~ 615 (715)
+.+.+++.
T Consensus 157 ~~~~~i~~~ 165 (324)
T d1h4vb2 157 RLKVKLSSV 165 (324)
T ss_dssp SCEEEEEEC
T ss_pred Ccceeeecc
Confidence 77777765
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=3.3e-18 Score=180.76 Aligned_cols=152 Identities=22% Similarity=0.330 Sum_probs=133.3
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.+|++|++|..+..++.|++.+.+.|+++||++|.||.|++.+++.. +| +...++||+|.|. |+.++|||..++++
T Consensus 7 ~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g--~~~~~~~~~f~D~~g~~l~LRpD~T~~i 84 (327)
T d1wu7a2 7 IRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG--EELLQQTYSFVDKGGREVTLIPEATPST 84 (327)
T ss_dssp CTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSC--TTGGGGSCEEECTTSCEEEECSCSHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCc--hhHHHHHhhhhcccchhhcccccccchh
Confidence 58999999999999999999999999999999999999999999864 44 3456889999886 89999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE--
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-- 607 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-- 607 (715)
++++.... ....|+|+||+|+|||++.++. | |.|||+|++++++|.+. .+++| ++.++.++++.+|++
T Consensus 85 ar~~~~~~--~~~~p~k~~y~g~VfR~~~~~~--g--~~re~~Q~G~EiiG~~~~~~D~E---ii~l~~~~l~~~~~~~~ 155 (327)
T d1wu7a2 85 VRMVTSRK--DLQRPLRWYSFPKVWRYEEPQA--G--RYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLQDI 155 (327)
T ss_dssp HHHHTTCT--TCCSSEEEEECCEEECCCCSCS--S--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTTTTS
T ss_pred hhHhhhhh--hccccceeeccCcceecccccc--C--CcchhhhhhhhhcCCcchHHHHH---HHHHHHHHHhccccccc
Confidence 88776543 2468999999999999999884 7 99999999999999874 77777 678999999999984
Q ss_pred EEEEEccC
Q psy10609 608 FNLRLSTR 615 (715)
Q Consensus 608 ~~v~l~~~ 615 (715)
+.+.++++
T Consensus 156 ~~i~l~~~ 163 (327)
T d1wu7a2 156 YEIRINSR 163 (327)
T ss_dssp EEEEEEEH
T ss_pred eeecccch
Confidence 77888775
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.7e-17 Score=171.21 Aligned_cols=147 Identities=18% Similarity=0.286 Sum_probs=128.4
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcc-cccCCCceEEeec-CceEEEecCChHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHW-AHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~-~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.+|++|++|..+..++.|++.+.+.|+++||++|.||.|++.+++.. .|.. +...+.+|.+.+. |+.++|||.-+++
T Consensus 5 ~~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~ 84 (322)
T d1kmma2 5 IRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAG 84 (322)
T ss_dssp CTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccch
Confidence 58999999999999999999999999999999999999999999864 4532 2345788998886 8999999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+++++..... ....|+|+|++|+|||+|.++. | |.|||+|+++++++.+. .++.| ++.++.++++.+|+.
T Consensus 85 iaR~~~~~~~-~~~~p~r~~y~g~v~r~~~~~~--g--r~re~~Q~g~EiiG~~~~~ad~E---ii~l~~~~l~~lgl~ 155 (322)
T d1kmma2 85 CVRAGIEHGL-LYNQEQRLWYIGPMFRHERPQK--G--RYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGIS 155 (322)
T ss_dssp HHHHHHHTTC-STTCCEEEEEEEEEECCCCCBT--T--BCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHTCG
T ss_pred hhHHHHhhhh-hhhhhhhHhhcccccccCCCCC--C--ccchhhhhhHHHhccccchhHHH---HHHHHHHHHHhcCCC
Confidence 9888876543 3468999999999999999984 8 99999999999999874 67777 688899999999996
|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2e-16 Score=151.02 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 282 MEGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
..++|.+||++++|..+ ..++.+|+..|.+ +|.++|+++.|+.+..
T Consensus 13 ~ahlLa~Av~~l~p~~kl~~g~~~~~GfyyD~~~~~~~~~edl~~ie~---~m~~ii~~~~~~~~~~------------- 76 (162)
T d1tkea2 13 CAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEK---RMHELAEKNYDVIKKK------------- 76 (162)
T ss_dssp HHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHH---HHHHHHTTCCBCEEEE-------------
T ss_pred HHHHHHHHHHHHCCCcEEEeccccCCeEEEEeeccCCCCHHHHHHHHH---HHHHHHHhcCCceEEE-------------
Confidence 58899999999999765 2579999999999 8999999999988874
Q ss_pred ccccCcChhhHHhhcccC--cchhhcccccc-CCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 344 PHVRHTGKIKAFKVTKYN--PFKLRILKEKV-NTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~--~~Kl~Ll~~~~-~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|..+ ++|..++.... ....+++|+||+|+|+|+||||||| |.++.|+|++++|.+|.
T Consensus 77 -----~s~~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~y~~g~~~dlc~Gphv~sT---g~ik~FkL~~vsgaYw~ 145 (162)
T d1tkea2 77 -----VSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM---RFCHHFKLMKTAGAYWR 145 (162)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBG---GGCCCEEEEEEEEEEGG
T ss_pred -----echHHHHHHHHHhhcchhhheeeccccccccceeeccCceEeecCCCccccC---cccceEEEEEechhhcC
Confidence 7999999999986 67777776533 4568999999999999999999999 77999999999999998
|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Probab=99.54 E-value=2.1e-15 Score=146.17 Aligned_cols=113 Identities=21% Similarity=0.297 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 282 MEGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
..++|.+|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 15 athlL~~Al~~~~~~~~~~~G~~~~~gf~~Df~~~~~lt~edl~~IE~---~m~~iI~~~~~i~~~~------------- 78 (179)
T d1nyra3 15 TAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEK---TMKQIVNENMKIERKV------------- 78 (179)
T ss_dssp HHHHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSCCCSTTHHHHHH---HHHHHHHTTCCEEEEE-------------
T ss_pred HHHHHHHHHHHHCCCcEEEEeeeeccceEEEEeecccCCHHHHHHHHH---HHHHHHHhhcceEEEE-------------
Confidence 37899999999999764 2689999999999 8999999999888774
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|..+.+|+.++...+.++.+++|++|+|+|+|.|||||+| |.++.|+|++.+|.+|..
T Consensus 79 -----~~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g~~~dlC~G~Hv~~T---~~I~~fki~~~sgay~~g 145 (179)
T d1nyra3 79 -----VSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPST---AKIKEFKLLSTAGAYWRG 145 (179)
T ss_dssp -----CTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTEEEECCSCCCSCG---GGCCEEEEEEEEEEETTS
T ss_pred -----cCHHHHHHHhccCccceehhhhcCCCCcEEEEeeCCEEEecCCCCCccc---cccCceEEEEeecccccC
Confidence 8999999999988999999998876778999999999999999999999 889999999999999973
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=5.2e-13 Score=137.41 Aligned_cols=125 Identities=13% Similarity=0.054 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeE
Q psy10609 468 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLR 547 (715)
Q Consensus 468 ~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlr 547 (715)
+++.++ .+.+.++||++|.||+|++.+. .....| ++.+|+.++|||..+++++++++.. ..+.|+|
T Consensus 7 ek~~sf-~~~~~~~Gy~~i~tP~~E~~e~---------~~~~~F-~D~~g~~l~LRpD~T~~iaR~~~~~---~~~~p~k 72 (275)
T d1usya_ 7 EKVFSF-YSKATKKGFSPFFVPALEKAEE---------PAGNFF-LDRKGNLFSIREDFTKTVLNHRKRY---SPDSQIK 72 (275)
T ss_dssp HHHHHH-HHHHHHTTCEECCCCSEEECSS---------CCSSCE-EETTSCEEEECCCHHHHHHHHHTTC---TTCCCEE
T ss_pred HHHHHH-HHHHHHcCCceeecCccccccc---------ccccee-EcCCCCEEEECCCCcHHHHHHHHHc---CCCCCee
Confidence 345554 4567889999999999999663 122233 2334899999999999998877643 2467999
Q ss_pred EEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 548 MADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 548 l~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
+|++|+|||++.+ +.|||+|+++++|+.+. .+++| ++.++.++++.+|++ +++.+++++
T Consensus 73 ~~Y~g~VfR~~~~-------~~re~~Q~G~EiiG~~~~~aD~E---vi~l~~~~l~~lgi~~~~i~l~~~~ 133 (275)
T d1usya_ 73 VWYADFVYRYSGS-------DLVAEYQLGLEKVPRNSLDDSLE---VLEIIVESASEFFEGPVIVEIGHTG 133 (275)
T ss_dssp EECCEEEEEEETT-------EEEEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHCCSCEEEEEEETT
T ss_pred eeEEeeEEEeCCC-------cccceeecCceeechhhHHHHHH---HHHHHHHHHHhhcccccEEEecCcc
Confidence 9999999998753 46999999999999875 77777 688999999999997 999999875
|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.8e-13 Score=109.51 Aligned_cols=60 Identities=35% Similarity=0.534 Sum_probs=57.9
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
|++||||||++..++. ++|+.|+|..|++++++.+++|+|||+++||++||+.||+|+++
T Consensus 1 M~~ItlPDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vng~l~dL~~~l~~d~~veii 60 (62)
T d1tkea1 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII 60 (62)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEE
T ss_pred CCEEECCCCCEEEcCC-CCCHHHHHHHHCchhhheEEEEEECCEEeCCCcCcCCCCEEEEE
Confidence 5789999999999988 89999999999999999999999999999999999999999998
|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Probab=99.32 E-value=1.5e-13 Score=108.94 Aligned_cols=59 Identities=37% Similarity=0.582 Sum_probs=56.5
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++||||||+.+.+++ ++|++|+|..|++++++.+++|+|||++|||++||+.||+|+++
T Consensus 1 I~ItlPDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vNg~~~dL~~~l~~d~~veii 59 (59)
T d1nyra2 1 INIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 59 (59)
T ss_dssp CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEE
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHChhhhheEEEEEECCEEccCCcCcCCCCEEEEC
Confidence 478999999999998 89999999999999999999999999999999999999999985
|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=4.9e-11 Score=95.10 Aligned_cols=62 Identities=27% Similarity=0.362 Sum_probs=58.4
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
|++|+||||+.++++. |+|+.|+|+.|++.+++.+|+|+|||++++ +++++.++|.++++|.
T Consensus 1 M~~ItlPDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vng~l~d--L~~~l~~d~~veiiTs 62 (62)
T d1tkea1 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVD--ACDLIENDAQLSIITA 62 (62)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEE--TTCCBCSCEEEEEECT
T ss_pred CCEEECCCCCEEEcCC-CCCHHHHHHHHCchhhheEEEEEECCEEeC--CCcCcCCCCEEEEEeC
Confidence 6899999999999998 999999999999999999999999999985 6899999999999973
|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Probab=98.86 E-value=2.2e-10 Score=90.32 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=55.2
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCcccccc
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~I 274 (715)
|+|+||||+.+++++ |+|+.|+|+.+++.+++.+|||+|||++++ +++++.+++.+++|
T Consensus 1 I~ItlPDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vNg~~~d--L~~~l~~d~~veii 59 (59)
T d1nyra2 1 INIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVD--LTKPLETDGSIEIV 59 (59)
T ss_dssp CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEEC--TTSCCCSCBCCCEE
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHChhhhheEEEEEECCEEcc--CCcCcCCCCEEEEC
Confidence 689999999999998 999999999999999999999999999985 68999999998875
|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: AlaX-like domain: Hypothetical protein PH0574 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=4.3e-09 Score=98.27 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.2
Q ss_pred CceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 375 PTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 375 ~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
..+.++.+|++ ++.|.||||++| |.++.|++.++.
T Consensus 101 ~~iriv~i~~~d~~~CgGTHV~~T---~eIg~~kI~~~~ 136 (151)
T d1v4pa_ 101 RILKVVVIEDWNVNACNKEHTKTT---GEIGPIKIRKVR 136 (151)
T ss_dssp CEEEEEEETTTEEEECCSCCCSBG---GGTCCEEEEEEE
T ss_pred cceEEEeecCceeeCCCCCccCCh---hhceeEEEEEEE
Confidence 46888999998 789999999999 668888877654
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=6.8e-05 Score=78.30 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..|.+.+++.|.+.||.||.||+|....- -| ..+.|.+.--+...+|+-..+-..-.+.. + .
T Consensus 44 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~---eg-----~~~~f~~~~~~~~~yL~~Spel~lk~ll~----~--g 109 (353)
T d1eova2 44 FRIQAGVCELFREYLATKKFTEVHTPKLLGAPS---EG-----GSSVFEVTYFKGKAYLAQSPQFNKQQLIV----A--D 109 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SS-----SSCCCEEEETTEEEEECSCTHHHHHHHHH----T--T
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC---cc-----hhccccceeeCCcceeccchhhhhhhhhh----c--c
Confidence 467888999999999999999999999966431 12 23456665445667788655544333322 1 1
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
+ =|+|++|+|||+|.....+ -.-||||.|++.-..
T Consensus 110 ~-~~vf~I~~~FR~E~~~~~r---H~pEFtmLE~y~a~~ 144 (353)
T d1eova2 110 F-ERVYEIGPVFRAENSNTHR---HMTEFTGLDMEMAFE 144 (353)
T ss_dssp C-CEEEEEEEEECCCCCCCTT---CCSEEEEEEEEEECS
T ss_pred c-ccceeechhhhcccccccc---ccchhcccccccccc
Confidence 2 2899999999999765311 225999999997544
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=97.86 E-value=5.6e-05 Score=78.31 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++.+|.+.+++.|.+.||.||.||+|..... .|+ .+.|.+...++.++|+-..+-..-. .+.+
T Consensus 33 ~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~---~~~-----~~~f~~~~~~~~~yL~~SpE~~lkr----ll~~-- 98 (335)
T d1b8aa2 33 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGG-----TELFPMKYFEEDAFLAESPQLYKEI----MMAS-- 98 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCC---SSS-----SSCCEEEETTEEEEECSCSHHHHHH----GGGT--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccCccCC---chh-----hhhccccccccccccccChHHHHHH----HHhh--
Confidence 3567889999999999999999999999965431 122 2457777778889998654433322 2222
Q ss_pred CCCeEEEEeccCcccCCCCCCCCccee-eeEeEeeEEE-EeCc-hhHHHHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRV-RRFQQDDAHI-FCTV-EQIGDEIVGALDFL 597 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~-REFtq~d~~i-f~~~-eqa~~E~~~~l~~~ 597 (715)
.+ =|+||+|+|||+|.++.. |- -||+|.+.+. +..+ ++.......++...
T Consensus 99 g~-~~if~i~~~FR~e~~~~~----rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~ 151 (335)
T d1b8aa2 99 GL-DRVYEIAPIFRAEEHNTT----RHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 151 (335)
T ss_dssp TC-CEEEEEEEEECCCSSCCS----SCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred hh-hhHHHhhccccccccccc----ccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 12 499999999999987641 33 4999996655 3344 34444444444433
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.73 E-value=0.00012 Score=74.52 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcc-cccCC--CceEEeecCceEEEecCChHHHHHHHHhhhcc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHW-AHYSE--NMFSFDVENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~-~~~~~--emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
.+++..|.+.+++.|.+.||.||.||++.+... +.. +...+ ..|.+.--++.++|+...+-..-.+.. .
T Consensus 14 l~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~----~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~lla----~ 85 (293)
T d1nnha_ 14 LDIQTKILEYMTDFFVKEGFKWLLPVIISPITD----PLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIA----M 85 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEECCCCEESCCC----CCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEcCCcccccCC----CCCCccccCccccccccCCCceeecccChhhhHHHHHH----h
Confidence 467889999999999999999999999865211 111 11111 233444347788999655433222221 1
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
.+ =|+|++|+|||+|.+....+ -..-||||.|.+.-..+ ++....+++++.
T Consensus 86 --g~-~~Vf~I~~~FR~E~~~s~t~-RH~~EFtmLE~e~~~~d~~d~m~~~e~li~ 137 (293)
T d1nnha_ 86 --GL-KKIFVLSPNIRLESRQKDDG-RHAYEFTQLDFEVERAKMEDIMRLIERLVY 137 (293)
T ss_dssp --TC-CEEEEEEEEECCCCGGGCSS-SCCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred --cc-ccceeechhhhcCcccCCCC-ccchhhhhhccccccccHHHHHHHHHHHHH
Confidence 23 28999999999996532112 13459999999874433 444455444443
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00018 Score=74.87 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|.+.||.||.||+|..... .| ..+.+.... .++.++|+-..+-..-.+. .+
T Consensus 32 lr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~---~g-----~~~~~~~~~~~~~~~~~L~~Spel~lk~ll----~~- 98 (346)
T d1c0aa3 32 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---EG-----ARDYLVPSRVHKGKFYALPQSPQLFKQLLM----MS- 98 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SS-----SCCCEEECSSSTTCEEECCSCSHHHHHHHH----HT-
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC---cc-----ccccccccccCCCccccCCcCHHHHHHHHh----hc-
Confidence 367889999999999999999999999966331 11 112333322 2567778865553332222 12
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.++.. |.-||||.|.+.-..+ ++..+..+.++
T Consensus 99 -g~-~~Vf~i~~~FR~E~~~~~----H~~EFtmLE~e~a~~~~~~~m~~~E~li 146 (346)
T d1c0aa3 99 -GF-DRYYQIVKCFRDEDLRAD----RQPEFTQIDVETSFMTAPQVREVMEALV 146 (346)
T ss_dssp -TC-CEEEEEEEEECCCCCBTT----BCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred -CC-CceEEEeeeccccccCch----hhhHhhhhccccccccHhHhHHHHHHHH
Confidence 12 399999999999988752 6699999999985544 34444443333
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=97.69 E-value=0.0002 Score=74.26 Aligned_cols=112 Identities=15% Similarity=0.065 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|.+.||.+|.||+|.... +|. ..+.|.+..+ +...+|....+-..-.+.. +.
T Consensus 23 ~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~----~~~----~~~~f~~~~~~~~~~~yL~~Spql~~k~~l~----~g 90 (342)
T d1e1oa2 23 FVVRSKILAAIRQFMVARGFMEVETPMMQVIP----GGA----SARPFITHHNALDLDMYLRIAPELYLKRLVV----GG 90 (342)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECCCCSEESSC----CSS----CCCCCEEEETTTTEEEEECSCSHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCccccC----CCC----CCcceeecccCCCcccccchhhHHHHHHHhh----hc
Confidence 56788999999999999999999999884421 121 2345655443 5667787655443322222 11
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
==|+|++|+|||+|..+. -++-||+|.|++.-..+ ++.....+.++
T Consensus 91 ---~~~vf~i~p~FR~E~~~~----rHl~EFtmlE~e~a~~~~~d~m~~~e~l~ 137 (342)
T d1e1oa2 91 ---FERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLF 137 (342)
T ss_dssp ---CCEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ---ccceeeeccccccccccc----cchHHHHHHHHHHHhhhhhhHHHhhhHHH
Confidence 148999999999997653 37799999999996554 44444444443
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=97.53 E-value=0.00038 Score=72.70 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..|.+.+++.|.+.||.+|.||.|..... .| ....|.... .+..++|+...+-..-.+.. +
T Consensus 39 ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~---eg-----~~~~~~~~~~~~~~~~yL~~Spel~lk~ll~----~ 106 (356)
T d1l0wa3 39 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---EG-----ARDFLVPYRHEPGLFYALPQSPQLFKQMLMV----A 106 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SS-----SCCCEEECTTSTTEEEECCSCSHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCCC---cc-----cccchhhhhcccccccCCCcChhHHHHHhhh----c
Confidence 3467889999999999999999999999965321 11 122333322 25566777544433222221 2
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVG 592 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~ 592 (715)
. + =|+|++|+|||+|.++.. +.-||+|.|++....+ ++.....++
T Consensus 107 g--~-~~Vf~i~~~FRaE~~~t~----H~~EFtmLE~e~~~~~~~~~m~~~E~ 152 (356)
T d1l0wa3 107 G--L-DRYFQIARCFRDEDLRAD----RQPDFTQLDLEMSFVEVEDVLELNER 152 (356)
T ss_dssp T--C-SEEEEEEEEECCCCCCSS----CCSEEEEEEEEEESCCHHHHHHHHHH
T ss_pred c--c-CcEEEEeccccccccCCc----chhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 1 2 399999999999998752 5689999999997765 344444333
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.0023 Score=63.81 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchh-hhhh----hCcccccCCCceEEeec------------CceEEEecCChHH
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQT----SGHWAHYSENMFSFDVE------------NETYALKPMNCPG 529 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~----sG~~~~~~~emy~~~d~------------~~~l~LRPt~e~~ 529 (715)
...+.+.+++.|...||+++..|.++... -|.. ..|-..-..+.|.++++ ...+.||.=+.+.
T Consensus 19 l~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~ 98 (266)
T d1jjca_ 19 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 98 (266)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHH
Confidence 55677888888999999999999887542 1221 22322222344555432 2457899844444
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcC
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 605 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LG 605 (715)
..+.... ..-|+|+...|+|||+|.--++ .+.+|+|.|+-++...-.. +. +......+++.++
T Consensus 99 q~r~~~~-----~~~p~~~~~~g~VyRrd~iD~t----H~p~FhQ~eg~~vd~~~~~-~~---Lk~~l~~~~~~~f 161 (266)
T d1jjca_ 99 QVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT----HEAVFHQLEGLVVGEGIAM-AH---LKGAIYELAQALF 161 (266)
T ss_dssp HHHHHHH-----SCSSEEEEEEEEEECCSCCCSS----CCSEEEEEEEEEEETTCCH-HH---HHHHHHHHHHHHH
T ss_pred HHHHHhc-----cCCCceEEecccceecCCCCCc----ccccceeeeeeeccccccH-HH---HHHHHHHHHHHhc
Confidence 4443332 2359999999999999986653 5699999999988765322 11 3345555666553
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=97.09 E-value=0.00095 Score=67.83 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++.+|...+++.|.+.||.||.||+|..... .|+ .+.|.++.-+..+.|+...+- +-.+... .
T Consensus 15 l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~---e~~-----~~~f~~~~~~~~~~L~~Spel-~k~ll~~---g--- 79 (304)
T d1n9wa2 15 LKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA---EGG-----SGLFGVDYFEKRAYLAQSPQL-YKQIMVG---V--- 79 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHH-HHHHHHH---H---
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC---CCC-----CceECCcccccchhccccHHH-HHHHhhc---c---
Confidence 567889999999999999999999999966321 121 234554433566778764443 2222221 1
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEe
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC 581 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~ 581 (715)
+. ++|++|+|||+|.+.. . -...||+|.|.+.-.
T Consensus 80 ~~-~if~i~~~FR~ee~~~--~-rh~~EF~~le~~~~~ 113 (304)
T d1n9wa2 80 FE-RVYEVAPVWRMEEHHT--S-RHLNEYLSLDVEMGF 113 (304)
T ss_dssp HS-EEEEEEEC----------------CCEEEEEEEES
T ss_pred cc-cceeehhhcccccccc--c-ccccHHHHHHHHHhh
Confidence 12 7999999999997642 1 135699999998743
|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: ThrRS/AlaRS common domain family: AlaX-like domain: AlaX-M trans-editing enzyme, C-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.76 E-value=0.0016 Score=57.98 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCC--ceeecCCcCCc-eEEEeecC
Q psy10609 147 WHSTAHVLGEAMERVYGG--CLCYGPPIENG-FYYDMYLD 183 (715)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~ 183 (715)
-||++|||+.|++++||. ..+.|..++.+ .++|+..+
T Consensus 11 ~HTa~Hll~~al~~~~g~~~~~~~G~~i~~~~~r~Df~~~ 50 (129)
T d2e1ba2 11 IHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYP 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECS
T ss_pred HhHHHHHHHHHHHHhcCCCcccccccccccceEEEEEecc
Confidence 499999999999999975 34568777665 77888643
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=93.73 E-value=0.1 Score=49.33 Aligned_cols=89 Identities=16% Similarity=0.059 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
....++.+++.+...||.|+.|-.|...+..+..+.- ++...+.+- .+.=+||++--|++....+.....-..-
T Consensus 17 ~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~----~~~i~l~NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~ 92 (207)
T d1jjcb5 17 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLD----PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPE 92 (207)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCC----CCSCEESSCSSGGGSEECSCSHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCC----CCcEEEeCCcchhhhhhhhhcchHHHHHHHhCccccccc
Confidence 3456777888899999999999999998877665531 223344432 2334799999999887776444211123
Q ss_pred CeEEEEeccCcccCC
Q psy10609 545 PLRMADFGVLHRNEL 559 (715)
Q Consensus 545 Plrl~~~g~~FR~E~ 559 (715)
++|++++|++|+...
T Consensus 93 ~~~lFEiG~vf~~~~ 107 (207)
T d1jjcb5 93 RALLFEVGRVFRERE 107 (207)
T ss_dssp EEEEEEEEEEESSSE
T ss_pred ceeeEeeeeeeeccc
Confidence 589999999997653
|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.48 E-value=0.043 Score=44.02 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=42.7
Q ss_pred EeeecCCCCHHHHHHhhhcCCcCceEEEEE--cCEEeccccccccCcceeee
Q psy10609 48 VPAKSWRTTPYDVAAGISKGLADSTIIAKV--NGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (715)
+..+. ++|+.|+|..|...+++.++-|++ ||+...++.+|+..-.++++
T Consensus 24 ~~Lp~-GsTv~D~A~~IH~dlg~~~~~A~~~~~g~~v~l~~~L~dgDvVeIi 74 (76)
T d1wxqa2 24 FLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIV 74 (76)
T ss_dssp EEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEE
T ss_pred EEeCC-CCcHHHHHHHHhHHHHhheEEEEECcCCEECCCCcCccCCCEEEEE
Confidence 44555 899999999999999999999987 99999999999987777776
|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.57 E-value=0.28 Score=39.04 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=40.9
Q ss_pred EecccCCCCHHHHHhhhcccccCceEEEEE--cCcccccCCccccccCccccccC
Q psy10609 223 VPAKSWRTTPYDVAAGISKGLADSTIIAKD--WTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 223 ~~~~~~~tT~~dia~~i~~~~~~~ivaA~V--n~~~~~ldl~~~i~~~~~ve~It 275 (715)
+.+++ |+|+.|+|..+...+++..+.|++ ||+..+ +++.+.+.+.++++|
T Consensus 24 ~~Lp~-GsTv~D~A~~IH~dlg~~~~~A~~~~~g~~v~--l~~~L~dgDvVeIiT 75 (76)
T d1wxqa2 24 FLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKRRVG--EDYELQFNDIVKIVS 75 (76)
T ss_dssp EEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCSBCC--TTCCCCTTEEEEEEE
T ss_pred EEeCC-CCcHHHHHHHHhHHHHhheEEEEECcCCEECC--CCcCccCCCEEEEEE
Confidence 45666 999999999999999999999997 777765 467777777777765
|
| >d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: MoaD/ThiS family: ThiS domain: Thiamin biosynthesis sulfur carrier protein ThiS species: Escherichia coli [TaxId: 562]
Probab=82.71 E-value=1.1 Score=34.14 Aligned_cols=54 Identities=6% Similarity=0.112 Sum_probs=43.2
Q ss_pred EEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
|++ +|+.+...+ ++|+.|+.+... .....++.-||+++.. -+.+|..+.+++++
T Consensus 2 I~v-Ng~~~~~~~-~~tl~~ll~~l~--~~~~~vaV~vN~~ivpk~~~~~~~L~~gD~ieIv 59 (65)
T d1zud21 2 ILF-NDQAMQCAA-GQTVHELLEQLD--QRQAGAALAINQQIVPREQWAQHIVQDGDQILLF 59 (65)
T ss_dssp EEE-TTEEECCCT-TCBHHHHHHHHT--CCCTTEEEEETTEECCGGGTTTCBCCTTCEEEEE
T ss_pred EEE-CCEEEEcCC-CCcHHHHHHHcC--CCCCcEEEEECCEEcCHHHHhhccCCCCCEEEEE
Confidence 566 899888887 799999998875 3445567779998876 46788888899988
|