Psyllid ID: psy10619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEcccccccccccHHHHHHHHHHccccEEccccccccccHHHHHHHHHcccEEEcccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEEEcccccEEEccccEEEEcccccccccccHHHHccccccccHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHccEEEEEEcccHHHccccHHHHHHHHHHHcccEEEcccccccccHHHHHHHHHcccEEccccHHHHHHHHcHHHHHHHHHHHcccEccEcccccccHHHHHHHHHHHcccEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEcccccEEEEEccccHHHcccccccHHHHHHEccccccccHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mlfpdpcvfqrhvkladeavcigppvaaqsyiNVDKIIDAIRQtradavhpgygflsenasFVSRLKeegvvfigptAECIRGMGDKLESKKLAKEAgvniipgfngiirdADHCVEIARDIGypvmikasaggggkgmriannDQEAIEGFKLSSQEAAASFGDDRILVEKFiknprhieiqgTTYKFLIQTEKEFeyakllppkpkldetkilhapmpglvksvnckvgdqimegqelcvvgkt
Flexible Loop (DISEMBL)
MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVniipgfngiiRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFiknprhieiqgTTYKFLIQTEKEFEYAKLLPPKPKLDetkilhapmpglvksvnCKVGDQIMEgqelcvvgkt
Low Complexity Region (SEG)
MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT
Disordered region (IsUnstruct)
*****PCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG**************************ASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV***
Disordered Region (DISOPRED)
MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT
Disordered Region (DISEMBL)
MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT
Disordered Region (DISPRO)
***PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q91ZA3	724	Propionyl-CoA carboxylase	yes	N/A	0.699	0.237	0.686	5e-63
P05165	728	Propionyl-CoA carboxylase	yes	N/A	0.699	0.236	0.686	4e-62
P14882	737	Propionyl-CoA carboxylase	yes	N/A	0.699	0.233	0.668	4e-60
Q19842	724	Propionyl-CoA carboxylase	yes	N/A	0.699	0.237	0.633	8e-57
Q612F5	738	Propionyl-CoA carboxylase	N/A	N/A	0.621	0.207	0.622	6e-56
Q06862	447	Biotin carboxylase OS=Nos	yes	N/A	0.699	0.384	0.517	3e-46
B9HBA8	528	Biotin carboxylase 1, chl	yes	N/A	0.723	0.337	0.483	5e-46
B9N843	526	Biotin carboxylase 2, chl	no	N/A	0.723	0.338	0.471	2e-44
Q42777	731	Methylcrotonoyl-CoA carbo	no	N/A	0.699	0.235	0.523	2e-44
O04983	537	Biotin carboxylase, chlor	yes	N/A	0.723	0.331	0.483	2e-44

>sp|Q91ZA3|PCCA_MOUSE Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Mus musculus GN=Pcca PE=2 SV=2

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 142/172 (82%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F  RL  E V
Sbjct: 98  HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKRLAAEDV 157

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 158 TFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 217

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 218 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 269

Mus musculus (taxid: 10090)
EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 3

>sp|P05165|PCCA_HUMAN Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Homo sapiens GN=PCCA PE=1 SV=4

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 144/172 (83%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F   L  E V
Sbjct: 102 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFARCLAAEDV 161

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
           VFIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DA+  V IAR+IGYPVMIKAS
Sbjct: 162 VFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKAS 221

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+LSSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 222 AGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P14882|PCCA_RAT Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Rattus norvegicus GN=Pcca PE=1 SV=3

 Score =  231 bits (588), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 139/172 (80%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D I++AI++T A AVHPGYGFLSEN  F   L  E V
Sbjct: 111 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTGAQAVHPGYGFLSENKEFAKCLAAEDV 170

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 171 TFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVLKDADEAVRIAREIGYPVMIKAS 230

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRI  +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 231 AGGGGKGMRIPWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 282

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q19842|PCCA_CAEEL Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Caenorhabditis elegans GN=pcca-1 PE=1 SV=1

 Score =  220 bits (560), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 138/172 (80%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+G    A+SY+  D+I+ A+  T A AVHPGYGFLSEN  F + L++ G 
Sbjct: 88  HVKMADEAVCVGEAPTAKSYLRADRILQAVEDTGAQAVHPGYGFLSENTKFAAELEKAGA 147

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP ++ I  MGDK+ SKK+A  A V++IPG++G I D D CV+++RDIGYPVMIKAS
Sbjct: 148 KFIGPNSKAILDMGDKIHSKKIATAARVSMIPGYDGEIADEDMCVKVSRDIGYPVMIKAS 207

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMR+A ND++A EG++LS QEAA+SFGDDR+LVEKFI NPRHIE+Q
Sbjct: 208 AGGGGKGMRVAWNDKQAREGYRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQ 259

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q612F5|PCCA_CAEBR Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Caenorhabditis briggsae GN=pcca-1 PE=3 SV=1

 Score =  217 bits (553), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/172 (62%), Positives = 139/172 (80%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEA+C+G    A+SY+ VD+I+ A+  T A AVHPGYGFLSEN  F + L++ G 
Sbjct: 102 HVKMADEAICVGEAPTAKSYLRVDRILQAVEDTGAQAVHPGYGFLSENTKFAAELEKAGA 161

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP ++ I  MGDK+ SKK+A  A V++IPG++G I + D CV+++R+IGYPVMIKAS
Sbjct: 162 KFIGPNSKAILDMGDKIHSKKIATAARVSMIPGYDGEIPEEDFCVKVSREIGYPVMIKAS 221

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMR+A ND++A EG++LS QEAA+SFGDDR+LVEKFI NPRHIE+Q
Sbjct: 222 AGGGGKGMRVAWNDKQAREGYRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQ 273

Caenorhabditis briggsae (taxid: 6238)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q06862|ACCC_NOSS1 Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 119/172 (69%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV+LADEAVCIG P +A+SY+N+  II A     A A+HPGYGFLSENA F     +  +
Sbjct: 42  HVQLADEAVCIGEPASAKSYLNIPNIIAAALTRNASAIHPGYGFLSENAKFAEICADHHI 101

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGPT E IR MGDK  +K+  ++AGV  +PG  G++      +E+A+DIGYPVMIKA+
Sbjct: 102 AFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEGLVETEQEGLELAKDIGYPVMIKAT 161

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+GMR+  +  E ++ F  +  EA A+FG+  + +EKFI+ PRHIE Q
Sbjct: 162 AGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQ 213

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1

 Score =  184 bits (467), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 124/178 (69%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVKLADE+VCIG   ++QSY+ +  ++ A    R   +HPGYGFL+ENA FV   +E G+
Sbjct: 104 HVKLADESVCIGEAPSSQSYLVIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGI 163

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP  + IR MGDK  +++  K+AGV  +PG +G+++  +  V +A +IGYPVMIKA+
Sbjct: 164 NFIGPNPDSIRVMGDKSTARETMKKAGVPTVPGSDGLLQSTEEGVRLANEIGYPVMIKAT 223

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189
           AGGGG+GMR+A    E ++  + +  EAAA+FG+D + +EK+++NPRHIE Q    KF
Sbjct: 224 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKF 281

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|B9N843|ACCC2_POPTR Biotin carboxylase 2, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_673504 PE=2 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 122/178 (68%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVKLADE+VCIG   + QSY+ +  ++ A        +HPGYGFL+ENA FV   +E G+
Sbjct: 106 HVKLADESVCIGEAPSNQSYLVIQNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGI 165

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP  + IR MGDK  +++  K+A V  +PG +G+++  +  V++A +IGYPVMIKA+
Sbjct: 166 NFIGPNPDSIRVMGDKSTARETMKKANVPTVPGSDGLLQSTEEAVKLASEIGYPVMIKAT 225

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189
           AGGGG+GMR+A    E ++  + +  EAAA+FG+D + +EK+++NPRHIE Q    KF
Sbjct: 226 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKF 283

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q42777|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 117/172 (68%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV  ADEA+ IGPP A  SY+N   I+DA  ++ A A+HPGYGFLSE+A F    +E G+
Sbjct: 72  HVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPGYGFLSESADFAKLCEESGL 131

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP A  IR MGDK  SK++   AGV ++PG++G  +D +     A  IGYPV+IK +
Sbjct: 132 TFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDIEKMKLEADRIGYPVLIKPT 191

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
            GGGGKGMRI +   E +E F  + +EAAASFG + IL+EK+I  PRHIE+Q
Sbjct: 192 HGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYITRPRHIEVQ 243

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|O04983|ACCC_ARATH Biotin carboxylase, chloroplastic OS=Arabidopsis thaliana GN=CAC2 PE=1 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 120/178 (67%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVKLADEAVCIG   + QSY+ +  ++ A        +HPGYGFLSENA FV   ++ G+
Sbjct: 113 HVKLADEAVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGI 172

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP  + IR MGDK  +++  K AGV  +PG +G+++  +  V +A +IG+PVMIKA+
Sbjct: 173 NFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQSTEEAVRVANEIGFPVMIKAT 232

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189
           AGGGG+GMR+A    E ++  + +  EAAA+FG+D   +EKF++NPRHIE Q    KF
Sbjct: 233 AGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKF 290

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
321477841	716	hypothetical protein DAPPUDRAFT_187192 [	0.589	0.202	0.744	6e-68
270007015	638	hypothetical protein TcasGA2_TC013459 [T	0.727	0.280	0.670	1e-62
91083023	684	PREDICTED: similar to Propionyl-CoA carb	0.727	0.261	0.670	1e-62
395527353	828	PREDICTED: propionyl-CoA carboxylase alp	0.711	0.211	0.677	2e-62
296481629	715	TPA: propionyl-CoA carboxylase alpha cha	0.699	0.240	0.686	8e-62
118084650	713	PREDICTED: propionyl-CoA carboxylase alp	0.699	0.241	0.691	8e-62
134085958	741	propionyl-CoA carboxylase alpha chain, m	0.699	0.232	0.686	8e-62
148668300	699	propionyl-Coenzyme A carboxylase, alpha	0.699	0.246	0.686	2e-61
348583772	702	PREDICTED: propionyl-CoA carboxylase alp	0.699	0.245	0.697	2e-61
348583768	728	PREDICTED: propionyl-CoA carboxylase alp	0.699	0.236	0.697	3e-61

>gi|321477841|gb|EFX88799.1| hypothetical protein DAPPUDRAFT_187192 [Daphnia pulex]

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 151/172 (87%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVCIGPP   +SY+N+DKI+  I+QT + AVHPGYGFLSENA FV+ L+ EGV
Sbjct: 88  HVKMADEAVCIGPPATRESYLNMDKILSVIKQTGSQAVHPGYGFLSENAEFVTILEREGV 147

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+A  I GMGDK+ESKK+AKEAGV++IPGF+G++ D DHC++IARDIGYPVMIKAS
Sbjct: 148 AFIGPSAHAISGMGDKIESKKVAKEAGVHVIPGFDGVVVDEDHCIQIARDIGYPVMIKAS 207

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA ND EA EGF+LS QEAA+SFGDDR+LVEKF+ NPRHIEIQ
Sbjct: 208 AGGGGKGMRIAWNDAEAREGFRLSKQEAASSFGDDRMLVEKFVDNPRHIEIQ 259

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007015|gb|EFA03463.1| hypothetical protein TcasGA2_TC013459 [Tribolium castaneum]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 154/182 (84%)

Query: 2   LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENAS 61
           ++ +   F  HVKLADEAV +GP +A++SY+N+ KIIDA++ T A+AVHPGYGFLSENAS
Sbjct: 8   VYSEADAFSPHVKLADEAVFLGPSLASESYLNIKKIIDAVKSTGAEAVHPGYGFLSENAS 67

Query: 62  FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121
           FVS L++E +VF+GP A  I  +GDKL SKKLA+ AGVN+IPGF+G IRDA HCVEIAR 
Sbjct: 68  FVSLLEDEKIVFVGPPAGVINKLGDKLASKKLAQNAGVNVIPGFDGEIRDAKHCVEIARQ 127

Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
           IGYPVMIKASAGGGGKGMRIA ND +A  GF++S++EAA+SFGD+RIL+EK I++PRH+E
Sbjct: 128 IGYPVMIKASAGGGGKGMRIARNDDDARNGFQMSTEEAASSFGDNRILLEKLIESPRHVE 187

Query: 182 IQ 183
           +Q
Sbjct: 188 VQ 189

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083023|ref|XP_974679.1| PREDICTED: similar to Propionyl-CoA carboxylase alpha chain, mitochondrial precursor (PCCase subunit alpha) (Propanoyl-CoA:carbon dioxide ligase subunit alpha) [Tribolium castaneum]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 154/182 (84%)

Query: 2   LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENAS 61
           ++ +   F  HVKLADEAV +GP +A++SY+N+ KIIDA++ T A+AVHPGYGFLSENAS
Sbjct: 54  VYSEADAFSPHVKLADEAVFLGPSLASESYLNIKKIIDAVKSTGAEAVHPGYGFLSENAS 113

Query: 62  FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121
           FVS L++E +VF+GP A  I  +GDKL SKKLA+ AGVN+IPGF+G IRDA HCVEIAR 
Sbjct: 114 FVSLLEDEKIVFVGPPAGVINKLGDKLASKKLAQNAGVNVIPGFDGEIRDAKHCVEIARQ 173

Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
           IGYPVMIKASAGGGGKGMRIA ND +A  GF++S++EAA+SFGD+RIL+EK I++PRH+E
Sbjct: 174 IGYPVMIKASAGGGGKGMRIARNDDDARNGFQMSTEEAASSFGDNRILLEKLIESPRHVE 233

Query: 182 IQ 183
           +Q
Sbjct: 234 VQ 235

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395527353|ref|XP_003765814.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial, partial [Sarcophilus harrisii]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 147/177 (83%)

Query: 7   CVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRL 66
           C+F+ HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F   L
Sbjct: 17  CLFKVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKLL 76

Query: 67  KEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPV 126
             EGV FIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPV
Sbjct: 77  AAEGVTFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPV 136

Query: 127 MIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           MIKASAGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 137 MIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 193

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296481629|tpg|DAA23744.1| TPA: propionyl-CoA carboxylase alpha chain, mitochondrial [Bos taurus]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 143/172 (83%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N++ I+DA+R TRA AVHPGYGFLSEN  F  RL  E V
Sbjct: 102 HVKMADEAVCVGPAPTSKSYLNMNAIMDAVRSTRAQAVHPGYGFLSENKEFAKRLAAEDV 161

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
           +FIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 162 IFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 221

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 222 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118084650|ref|XP_416970.2| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial [Gallus gallus]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 119/172 (69%), Positives = 142/172 (82%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D I++ I++TRA AVHPGYGFLSEN  F  RL  EGV
Sbjct: 87  HVKMADEAVCVGPAPTSKSYLNMDAIMEVIKKTRAQAVHPGYGFLSENKEFARRLAAEGV 146

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 147 TFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 206

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  EGF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 207 AGGGGKGMRIAWDDEETREGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 258

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|134085958|ref|NP_001076978.1| propionyl-CoA carboxylase alpha chain, mitochondrial [Bos taurus] gi|133778161|gb|AAI23877.1| PCCA protein [Bos taurus]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 143/172 (83%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N++ I+DA+R TRA AVHPGYGFLSEN  F  RL  E V
Sbjct: 102 HVKMADEAVCVGPAPTSKSYLNMNAIMDAVRSTRAQAVHPGYGFLSENKEFAKRLAAEDV 161

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
           +FIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 162 IFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 221

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 222 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148668300|gb|EDL00630.1| propionyl-Coenzyme A carboxylase, alpha polypeptide, isoform CRA_a [Mus musculus]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 142/172 (82%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F  RL  E V
Sbjct: 98  HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKRLAAEDV 157

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 158 TFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 217

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 218 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 269

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348583772|ref|XP_003477646.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial-like isoform 3 [Cavia porcellus]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 142/172 (82%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D IIDAIR+TRA AVHPGYGFLSEN  F   L  E V
Sbjct: 76  HVKMADEAVCVGPAPTSKSYLNMDAIIDAIRRTRAQAVHPGYGFLSENKEFARCLAAEDV 135

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 136 TFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 195

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 196 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 247

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348583768|ref|XP_003477644.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial-like isoform 1 [Cavia porcellus]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 142/172 (82%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEAVC+GP   ++SY+N+D IIDAIR+TRA AVHPGYGFLSEN  F   L  E V
Sbjct: 102 HVKMADEAVCVGPAPTSKSYLNMDAIIDAIRRTRAQAVHPGYGFLSENKEFARCLAAEDV 161

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct: 162 TFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 221

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct: 222 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
UNIPROTKB|F1P0M2	690	PCCA "Uncharacterized protein"	0.699	0.249	0.691	5.9e-76
UNIPROTKB|F6QNC4	741	PCCA "Uncharacterized protein"	0.699	0.232	0.686	2.3e-74
MGI|MGI:97499	724	Pcca "propionyl-Coenzyme A car	0.699	0.237	0.686	2.5e-73
UNIPROTKB|P05165	728	PCCA "Propionyl-CoA carboxylas	0.699	0.236	0.686	2.5e-73
UNIPROTKB|E2R518	731	PCCA "Uncharacterized protein"	0.699	0.235	0.686	1.1e-72
RGD|3264	737	Pcca "propionyl-coenzyme A car	0.699	0.233	0.668	3.3e-71
UNIPROTKB|P14882	737	Pcca "Propionyl-CoA carboxylas	0.699	0.233	0.668	3.3e-71
TIGR_CMR|SPO_1101	681	SPO_1101 "propionyl-CoA carbox	0.699	0.252	0.662	7.7e-70
ZFIN|ZDB-GENE-040718-246	721	pcca "propionyl-Coenzyme A car	0.699	0.238	0.680	8.7e-65
UNIPROTKB|E1BR16	393	PCCA "Uncharacterized protein"	0.699	0.437	0.691	2.3e-62

UNIPROTKB|F1P0M2 PCCA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 637 (229.3 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 119/172 (69%), Positives = 142/172 (82%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++ I++TRA AVHPGYGFLSEN  F  RL  EGV
Sbjct:    62 HVKMADEAVCVGPAPTSKSYLNMDAIMEVIKKTRAQAVHPGYGFLSENKEFARRLAAEGV 121

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
              FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:   122 TFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 181

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA +D+E  EGF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   182 AGGGGKGMRIAWDDEETREGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 233

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004658 "propionyl-CoA carboxylase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

UNIPROTKB|F6QNC4 PCCA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 636 (228.9 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
 Identities = 118/172 (68%), Positives = 143/172 (83%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N++ I+DA+R TRA AVHPGYGFLSEN  F  RL  E V
Sbjct:   102 HVKMADEAVCVGPAPTSKSYLNMNAIMDAVRSTRAQAVHPGYGFLSENKEFAKRLAAEDV 161

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
             +FIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:   162 IFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 221

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   222 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

GO:0019899 "enzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004658 "propionyl-CoA carboxylase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

MGI|MGI:97499 Pcca "propionyl-Coenzyme A carboxylase, alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 632 (227.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 118/172 (68%), Positives = 142/172 (82%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F  RL  E V
Sbjct:    98 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKRLAAEDV 157

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
              FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:   158 TFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 217

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   218 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0004658 "propionyl-CoA carboxylase activity" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008152 "metabolic process" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P05165 PCCA "Propionyl-CoA carboxylase alpha chain, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 628 (226.1 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 118/172 (68%), Positives = 144/172 (83%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F   L  E V
Sbjct:   102 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFARCLAAEDV 161

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
             VFIGP    I+ MGDK+ESK LAK+A VN IPGF+G+++DA+  V IAR+IGYPVMIKAS
Sbjct:   162 VFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKAS 221

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA +D+E  +GF+LSSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   222 AGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004658 "propionyl-CoA carboxylase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0009374 "biotin binding" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0019626 "short-chain fatty acid catabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E2R518 PCCA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 628 (226.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 118/172 (68%), Positives = 142/172 (82%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++AI++TRA AVHPGYGFLSEN  F   L  E V
Sbjct:   102 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKCLAAEDV 161

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
             VFIGP    I  MGDK+ESK LAK+A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:   162 VFIGPDTHAIHAMGDKIESKLLAKKAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 221

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   222 AGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 273

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

RGD|3264 Pcca "propionyl-coenzyme A carboxylase, alpha polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 611 (220.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 115/172 (66%), Positives = 139/172 (80%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++AI++T A AVHPGYGFLSEN  F   L  E V
Sbjct:   111 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTGAQAVHPGYGFLSENKEFAKCLAAEDV 170

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
              FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:   171 TFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVLKDADEAVRIAREIGYPVMIKAS 230

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRI  +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   231 AGGGGKGMRIPWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 282

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0004658 "propionyl-CoA carboxylase activity" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=TAS

GO:0009063 "cellular amino acid catabolic process" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P14882 Pcca "Propionyl-CoA carboxylase alpha chain, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 611 (220.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 115/172 (66%), Positives = 139/172 (80%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++AI++T A AVHPGYGFLSEN  F   L  E V
Sbjct:   111 HVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTGAQAVHPGYGFLSENKEFAKCLAAEDV 170

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
              FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:   171 TFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVLKDADEAVRIAREIGYPVMIKAS 230

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRI  +D+E  +GF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   231 AGGGGKGMRIPWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 282

GO:0004075 "biotin carboxylase activity" evidence=IEA

TIGR_CMR|SPO_1101 SPO_1101 "propionyl-CoA carboxylase, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 593 (213.8 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
 Identities = 114/172 (66%), Positives = 135/172 (78%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HV++ADEAV IGPP A QSYI +DK++ AIR T A AVHPGYGFLSEN+ F   L+ EGV
Sbjct:    41 HVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGV 100

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
             +F+GP    I  MGDK+ SKK+A+EA V+ +PG+ G+I DAD  V+I+  IGYPVMIKAS
Sbjct:   101 IFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKAS 160

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA NDQEA EGF+ S  EAA SFGDDRI +EKF+  PRHIEIQ
Sbjct:   161 AGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

GO:0004658 "propionyl-CoA carboxylase activity" evidence=ISS

GO:0019541 "propionate metabolic process" evidence=ISS

ZFIN|ZDB-GENE-040718-246 pcca "propionyl-Coenzyme A carboxylase, alpha polypeptide" [Danio rerio (taxid:7955)]

 Score = 623 (224.4 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 117/172 (68%), Positives = 141/172 (81%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++AI+ T A AVHPGYGFLSEN  F  RL  EGV
Sbjct:    95 HVKMADEAVCVGPAPTSKSYLNMDAIMNAIKLTGAQAVHPGYGFLSENKEFAKRLAAEGV 154

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
              FIGP    I+ MGDK+ESK +AK A VN IPGF+G+++DA+  V+IA +IGYPVMIKAS
Sbjct:   155 TFIGPDTHAIQAMGDKIESKLIAKAAKVNTIPGFDGVVKDAEEAVKIAGEIGYPVMIKAS 214

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA ND+E  EGF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   215 AGGGGKGMRIAWNDEETREGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 266

GO:0016874 "ligase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BR16 PCCA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 119/172 (69%), Positives = 142/172 (82%)

Query:    12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
             HVK+ADEAVC+GP   ++SY+N+D I++ I++TRA AVHPGYGFLSEN  F  RL  EGV
Sbjct:    18 HVKMADEAVCVGPAPTSKSYLNMDAIMEVIKKTRAQAVHPGYGFLSENKEFARRLAAEGV 77

Query:    72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
              FIGP    I+ MGDK+ESK LAK A VN IPGF+G+++DAD  V IAR+IGYPVMIKAS
Sbjct:    78 TFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKAS 137

Query:   132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             AGGGGKGMRIA +D+E  EGF+ SSQEAA+SFGDDR+L+EKFI NPRHIEIQ
Sbjct:   138 AGGGGKGMRIAWDDEETREGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQ 189

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05165	PCCA_HUMAN	6, ., 4, ., 1, ., 3	0.6860	0.6991	0.2362	yes	N/A
Q58626	PYCA_METJA	6, ., 4, ., 1, ., 1	0.5058	0.6991	0.3433	yes	N/A
Q06862	ACCC_NOSS1	6, ., 4, ., 1, ., 2	0.5174	0.6991	0.3847	yes	N/A
P14882	PCCA_RAT	6, ., 4, ., 1, ., 3	0.6686	0.6991	0.2333	yes	N/A
Q19842	PCCA_CAEEL	6, ., 4, ., 1, ., 3	0.6337	0.6991	0.2375	yes	N/A
Q2QMG2	MCCA_ORYSJ	6, ., 4, ., 1, ., 4	0.5116	0.6991	0.2333	yes	N/A
O52058	ACCC_ALLVD	6, ., 4, ., 1, ., 2	0.5172	0.7032	0.3853	yes	N/A
Q91ZA3	PCCA_MOUSE	6, ., 4, ., 1, ., 3	0.6860	0.6991	0.2375	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	246
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	2e-91
PRK08591	451	PRK08591, PRK08591, acetyl-CoA carboxylase biotin	7e-87
PRK06111	450	PRK06111, PRK06111, acetyl-CoA carboxylase biotin	1e-79
TIGR00514	449	TIGR00514, accC, acetyl-CoA carboxylase, biotin ca	4e-75
PRK08654	499	PRK08654, PRK08654, pyruvate carboxylase subunit A	6e-75
PRK05586	447	PRK05586, PRK05586, biotin carboxylase; Validated	1e-74
COG0439	449	COG0439, AccC, Biotin carboxylase [Lipid metabolis	3e-73
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	4e-70
PRK12833	467	PRK12833, PRK12833, acetyl-CoA carboxylase biotin	3e-68
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	2e-63
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	9e-61
PRK08462	445	PRK08462, PRK08462, biotin carboxylase; Validated	5e-60
PRK07178	472	PRK07178, PRK07178, pyruvate carboxylase subunit A	4e-56
TIGR01235	1143	TIGR01235, pyruv_carbox, pyruvate carboxylase	9e-53
PRK08463	478	PRK08463, PRK08463, acetyl-CoA carboxylase subunit	2e-48
pfam02786	211	pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha	2e-37
pfam00289	108	pfam00289, CPSase_L_chain, Carbamoyl-phosphate syn	2e-30
PRK14016	727	PRK14016, PRK14016, cyanophycin synthetase; Provis	1e-11
PRK01372	304	PRK01372, ddl, D-alanine--D-alanine ligase; Review	7e-11
TIGR01369	1050	TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth	5e-10
PRK12815	1068	PRK12815, carB, carbamoyl phosphate synthase large	1e-09
COG0458	400	COG0458, CarB, Carbamoylphosphate synthase large s	7e-09
PRK05294	1066	PRK05294, carB, carbamoyl phosphate synthase large	2e-08
TIGR02068	864	TIGR02068, cya_phycin_syn, cyanophycin synthetase	5e-08
PRK05294	1066	PRK05294, carB, carbamoyl phosphate synthase large	7e-08
PRK12767	326	PRK12767, PRK12767, carbamoyl phosphate synthase-l	8e-08
PRK01966	333	PRK01966, ddl, D-alanyl-alanine synthetase A; Revi	8e-08
TIGR01369	1050	TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth	2e-07
TIGR01205	315	TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l	2e-07
COG0026	375	COG0026, PurK, Phosphoribosylaminoimidazole carbox	2e-07
COG0151	428	COG0151, PurD, Phosphoribosylamine-glycine ligase	6e-07
TIGR01161	352	TIGR01161, purK, phosphoribosylaminoimidazole carb	2e-06
PRK06019	372	PRK06019, PRK06019, phosphoribosylaminoimidazole c	2e-06
TIGR00877	422	TIGR00877, purD, phosphoribosylamine--glycine liga	3e-06
pfam13535	183	pfam13535, ATP-grasp_4, ATP-grasp domain	5e-06
COG1181	317	COG1181, DdlA, D-alanine-D-alanine ligase and rela	2e-05
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	3e-05
pfam02222	171	pfam02222, ATP-grasp, ATP-grasp domain	3e-05
PRK00885	420	PRK00885, PRK00885, phosphoribosylamine--glycine l	3e-05
COG0189	318	COG0189, RimK, Glutathione synthase/Ribosomal prot	5e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	6e-05
pfam07478	201	pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t	8e-05
PLN02735	1102	PLN02735, PLN02735, carbamoyl-phosphate synthase	1e-04
PLN02735	1102	PLN02735, PLN02735, carbamoyl-phosphate synthase	2e-04
PRK12815	1068	PRK12815, carB, carbamoyl phosphate synthase large	3e-04
PRK02186	887	PRK02186, PRK02186, argininosuccinate lyase; Provi	5e-04
pfam01071	193	pfam01071, GARS_A, Phosphoribosylglycinamide synth	9e-04
TIGR02144	280	TIGR02144, LysX_arch, Lysine biosynthesis enzyme L	0.001
COG0045	387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	0.002
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	0.003

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score =  281 bits (722), Expect = 2e-91
 Identities = 104/173 (60%), Positives = 134/173 (77%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
            HV++ADEAV IGP  AA+SY+++DKIIDA R+T A A+HPGYGFLSENA F   +++ G
Sbjct: 40  LHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAG 99

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           +VFIGP+A  IR MGDK+ +KKLA EAGV  +PG++G I+DA   V IA +IGYPV+IKA
Sbjct: 100 LVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           SAGGGGKGMR+    +E  E  + + +EA ASFGDDR+ +EK++  PRHIEIQ
Sbjct: 160 SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQ 212

Length = 645

>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated

 Score =  264 bits (677), Expect = 7e-87
 Identities = 91/172 (52%), Positives = 126/172 (73%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV+LADEAVCIGP  + +SY+N+  II A   T ADA+HPGYGFLSENA F    ++ G 
Sbjct: 41  HVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGF 100

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+AE IR MGDK+ +K   K+AGV ++PG +G + D +  + IA++IGYPV+IKA+
Sbjct: 101 TFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+GMR+   + E  + F ++  EA A+FG+  + +EK+++NPRHIEIQ
Sbjct: 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQ 212

Length = 451

>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated

 Score =  246 bits (629), Expect = 1e-79
 Identities = 90/173 (52%), Positives = 127/173 (73%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
            HVK+ADEA  IG P   +SY+N++KII+  ++T A+A+HPGYG LSENASF  R KEEG
Sbjct: 40  LHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEG 99

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           +VFIGP+A+ I  MG K+E+++  + AGV ++PG    + DA+  + IAR IGYPVM+KA
Sbjct: 100 IVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKA 159

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           SAGGGG GM++   +QE  + F+ + + AA  FG+  + +EK+I++PRHIEIQ
Sbjct: 160 SAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQ 212

Length = 450

>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit

 Score =  234 bits (598), Expect = 4e-75
 Identities = 92/172 (53%), Positives = 126/172 (73%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV LADEAVCIGP  +A+SY+N+  II A   T ADA+HPGYGFLSENA+F  + +  G 
Sbjct: 41  HVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGF 100

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+AE IR MGDK+ + +  K+AGV  +PG +G++ D +  V IA+ IGYPV+IKA+
Sbjct: 101 TFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+GMR+     E ++   ++  EA A+FG+D + +EK+I+NPRH+EIQ
Sbjct: 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQ 212

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 449

>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated

 Score =  235 bits (601), Expect = 6e-75
 Identities = 83/172 (48%), Positives = 121/172 (70%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
            VK ADEA  IGP   ++SY+N+++IID  ++  ADA+HPGYGFL+EN  F    ++ G+
Sbjct: 41  FVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGI 100

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
           VFIGP+++ I  MG K+ +KKL K+AGV ++PG    I D +   EIA +IGYPV+IKAS
Sbjct: 101 VFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG GMR+  +++E  +  + +   A ++FGD  + +EK+++ PRHIEIQ
Sbjct: 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQ 212

Length = 499

>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated

 Score =  233 bits (595), Expect = 1e-74
 Identities = 90/172 (52%), Positives = 125/172 (72%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV+LADEAVCIGP  +  SY+N+  II A   T A A+HPG+GFLSEN+ F    KE  +
Sbjct: 41  HVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNI 100

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
           VFIGP +E I  MG+K  ++++  +AGV ++PG  G I + +  +EIA++IGYPVM+KAS
Sbjct: 101 VFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+G+RI  +++E I+ F  +  EA A+FGDD + +EKFI+NP+HIE Q
Sbjct: 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQ 212

Length = 447

>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism]

 Score =  229 bits (586), Expect = 3e-73
 Identities = 94/173 (54%), Positives = 129/173 (74%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
            HV LADEAVCIGP  +A SY+N+D II A  +T ADA+HPGYGFLSENA+F     E G
Sbjct: 40  LHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAG 99

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP+AE IR MGDK+ +++L  +AGV ++PG +G + D +  + IA +IGYPV++KA
Sbjct: 100 LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKA 159

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           +AGGGG+GMR+  N++E    F+ +  EA A+FG+ R+ +EKFI+ PRHIE+Q
Sbjct: 160 AAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQ 212

Length = 449

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score =  232 bits (594), Expect = 4e-70
 Identities = 87/171 (50%), Positives = 121/171 (70%), Gaps = 5/171 (2%)

Query: 16  ADEAVCIGP---PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
           ADEA  IG    PV A  Y+++D+II   +Q   DA+HPGYGFLSEN  F     E G+ 
Sbjct: 48  ADEAYLIGEGKHPVRA--YLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGIT 105

Query: 73  FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
           FIGPTAE +R +GDK+ ++  A +AGV +IPG  G I D +  +E A +IGYP+M+KASA
Sbjct: 106 FIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASA 165

Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           GGGG+GMRI  +++E  E F+ + +EA A+FG+D + +EK+++NPRHIE+Q
Sbjct: 166 GGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQ 216

Length = 1146

>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

 Score =  217 bits (554), Expect = 3e-68
 Identities = 84/171 (49%), Positives = 122/171 (71%)

Query: 13  VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
            ++ADEAV IGP  AA+SY+N   I+ A RQ  ADA+HPGYGFLSENA+F   ++  G++
Sbjct: 45  ARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLI 104

Query: 73  FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
           F+GP A+ IR MGDK  +++ A+ AGV  +PG +G++   D  +E+A  IGYP+MIKA+A
Sbjct: 105 FVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAA 164

Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           GGGG+G+R+A++  +      L+ +EA A+FGD  + +E+FI   RHIE+Q
Sbjct: 165 GGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQ 215

Length = 467

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score =  213 bits (545), Expect = 2e-63
 Identities = 82/181 (45%), Positives = 124/181 (68%), Gaps = 1/181 (0%)

Query: 3   FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF 62
           + D     +HV  ADEAVC+G   AA+SY+++DKI+ A ++T A A+HPGYGFLSENA+F
Sbjct: 31  YSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAF 90

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
               +  G+VF+GPT E IR  G K  +++LA+ AGV ++PG  G++   D  +E A++I
Sbjct: 91  AEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPG-TGLLSSLDEALEAAKEI 149

Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           GYPVM+K++AGGGG GM+  ++  E  E F+   +   + FGD  + +E+F++N RH+E+
Sbjct: 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEV 209

Query: 183 Q 183
           Q
Sbjct: 210 Q 210

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score =  206 bits (525), Expect = 9e-61
 Identities = 80/171 (46%), Positives = 117/171 (68%), Gaps = 5/171 (2%)

Query: 16  ADEAVCIGP---PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
           ADE+  IG    PV A  Y+++D+II   +++ ADA+HPGYGFLSEN  F     E G+ 
Sbjct: 50  ADESYLIGEGKGPVEA--YLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGIT 107

Query: 73  FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
           FIGP  E +  +GDK++++  A +AGV +IPG +G I   +  +E A + GYPVMIKA+A
Sbjct: 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAA 167

Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           GGGG+GMR+  ++ +  E F+ +  EA A+FG+D + VEK ++NP+HIE+Q
Sbjct: 168 GGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQ 218

Length = 1149

>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated

 Score =  195 bits (497), Expect = 5e-60
 Identities = 76/172 (44%), Positives = 116/172 (67%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K AD  +CIG   +++SY+N+  II A     ADA+ PGYGFLSEN +FV       +
Sbjct: 43  YLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNI 102

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+ E +  M DK ++K++ K AGV +IPG +G ++  +   +IA++IGYPV++KA+
Sbjct: 103 KFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+GMR+  ++ +    +  +  EA ++FGD  + +EKFI NPRHIE+Q
Sbjct: 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQ 214

Length = 445

>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated

 Score =  185 bits (472), Expect = 4e-56
 Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 3/173 (1%)

Query: 12  HVKLADEAVCIGP-PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           HVK ADEA  IG  P+A   Y+N  ++++   +T  DA+HPGYGFLSENA       E G
Sbjct: 41  HVKRADEAYSIGADPLAG--YLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERG 98

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP+AE IR MGDK E+++   +AGV + PG  G + D D  +  A  IGYPVM+KA
Sbjct: 99  IKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKA 158

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGG+G+R  N+ +E  + F     EA  +FG   + +EK I NP+HIE+Q
Sbjct: 159 TSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQ 211

Length = 472

>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase

 Score =  183 bits (465), Expect = 9e-53
 Identities = 76/177 (42%), Positives = 116/177 (65%), Gaps = 7/177 (3%)

Query: 12  HVKLADEAVCIG-----PPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRL 66
           H + ADE+  +G      P+ A  Y+++D+II   +    DA+HPGYGFLSEN+ F    
Sbjct: 38  HRQKADESYQVGEGPDLGPIEA--YLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADAC 95

Query: 67  KEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPV 126
            + G++FIGP AE +  +GDK+ ++ LA +AGV ++PG +G     +  ++ A  IGYPV
Sbjct: 96  NKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPV 155

Query: 127 MIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           +IKAS GGGG+GMR+  ++ +  + F+ +  EA A+FG+D + VEK I+ PRHIE+Q
Sbjct: 156 IIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQ 212

This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143

>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated

 Score =  165 bits (419), Expect = 2e-48
 Identities = 74/173 (42%), Positives = 115/173 (66%), Gaps = 2/173 (1%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVK+ADEA  IG     + Y++V +I++  +   ADA+HPGYGFLSEN  F   +++ G+
Sbjct: 41  HVKIADEAYRIGTD-PIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGI 99

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA-DHCVEIARDIGYPVMIKA 130
           +FIGP +E IR MG+K  ++ L K+ G+ I+PG   +  ++ +     AR IGYPV++KA
Sbjct: 100 IFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           S GGGG+G+R+ + +++    F+   +EA A F +D + +EK++ NPRHIE Q
Sbjct: 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQ 212

Length = 478

>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain

 Score =  130 bits (329), Expect = 2e-37
 Identities = 48/98 (48%), Positives = 66/98 (67%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           DK+  K   KEAGV  +PG  G +   +  +  A++IGYPV+IKA+ GGGG GM IA N+
Sbjct: 1   DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE 60

Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           +E  E F L+  EA A+FG+ ++LVEK +K P+HIE Q
Sbjct: 61  EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQ 98

Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Length = 211

>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain

 Score =  109 bits (274), Expect = 2e-30
 Identities = 38/79 (48%), Positives = 54/79 (68%)

Query: 1   MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
            +  +P     HV+LADEA  +GP  A++SY+N+++I+D   +  ADA+HPGYGFLSENA
Sbjct: 29  AVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPGYGFLSENA 88

Query: 61  SFVSRLKEEGVVFIGPTAE 79
            F    +E G+ FIGP+ E
Sbjct: 89  EFAEACEEAGITFIGPSPE 107

Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. Length = 108

>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANN 144
           DK  +K+L   AGV +  G   ++  A+   E A +IGYPV++K   G  G+G+ +    
Sbjct: 214 DKELTKRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITT 271

Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
            +E    +       A+    D ++VE++I 
Sbjct: 272 REEIEAAY-----AVASKESSD-VIVERYIP 296

Length = 727

>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed

 Score = 60.5 bits (148), Expect = 7e-11
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 34/139 (24%)

Query: 63  VSRLKEEG--VVFI---GPTAE--CIRG----MG---------------DKLESKKLAKE 96
            ++LKE G   VF    G   E   I+G    +G               DKL +K + + 
Sbjct: 49  AAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQA 108

Query: 97  AGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSS 156
           AG+   P    ++   +  +     +G P+++K +  G   G+     + E         
Sbjct: 109 AGLPTPPW--IVLTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAAL---- 162

Query: 157 QEAAASFGDDRILVEKFIK 175
            E A  + DD +LVEK+IK
Sbjct: 163 -ELAFKY-DDEVLVEKYIK 179

Length = 304

>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 30/162 (18%)

Query: 33  NVDKIIDAIRQTRADAVHPGYG---------FLSENASFVSRLKEEGVVFIGPTAECIRG 83
            V+KII    + R DA+ P +G          L E+      L++ GV  +G   E I+ 
Sbjct: 72  AVEKII---EKERPDAILPTFGGQTALNLAVELEESGV----LEKYGVEVLGTPVEAIKK 124

Query: 84  MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN 143
             D+   ++  KE G  +      I    +  +  A++IGYPV+++ +   GG G  IA 
Sbjct: 125 AEDRELFREAMKEIGEPVPESE--IAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAY 182

Query: 144 NDQEAIE----GFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
           N +E  E        S          +++LVEK +   + IE
Sbjct: 183 NREELKEIAERALSASPI--------NQVLVEKSLAGWKEIE 216

Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050

>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
              L+E G+  +G + + I  + D+    +L  E G+  +PG      D +     A+ I
Sbjct: 647 AKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPG--LTATDEEEAFAFAKRI 704

Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
           GYPV+I+ S   GG+GM +  ++        L +  A  +     IL+++FI
Sbjct: 705 GYPVLIRPSYVIGGQGMAVVYDEPA------LEAYLAENASQLYPILIDQFI 750

Length = 1068

>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 22/161 (13%)

Query: 32  INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV------FIGPTAECIRGMG 85
           I  + +   I + R DA+ P  G  +   +    LKE+GV+       +G   E I    
Sbjct: 57  ITKEPVEKIIEKERPDAILPTLGGQTA-LNAALELKEKGVLEKYGVEVVGSDPEAIEIAE 115

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           DK   K+  +E G+ +      I    +   EIA +IGYPV++K S G GG G  IA N+
Sbjct: 116 DKKLFKEAMREIGIPVPSR---IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNE 172

Query: 146 QEAIE----GFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           +E  E    G + S          + +L+E+ I   +  E 
Sbjct: 173 EELEEIIEEGLRAS--------PVEEVLIEESIIGWKEFEY 205

Length = 400

>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 53.9 bits (131), Expect = 2e-08
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 43/177 (24%)

Query: 15  LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYG---------FLSENASFVSR 65
           +AD A  I P       I  + +   I + R DA+ P  G          L+E+      
Sbjct: 60  MAD-ATYIEP-------ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGV---- 107

Query: 66  LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
           L++ GV  IG   E I    D+   K+  K+ G+ +     GI    +  +E+A +IGYP
Sbjct: 108 LEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRS--GIAHSMEEALEVAEEIGYP 165

Query: 126 VMIKAS--AGGGGKGMRIANNDQEAIE----GFKLS--SQEAAASFGDDRILVEKFI 174
           V+I+ S   GG G G  IA N++E  E    G  LS  ++          +L+E+ +
Sbjct: 166 VIIRPSFTLGGTGGG--IAYNEEELEEIVERGLDLSPVTE----------VLIEESL 210

Length = 1066

>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%)

Query: 3   FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF 62
           F      QR ++       +GP  AA       + I  +R +    V  GYG      S 
Sbjct: 139 FDLEQALQR-LRDLVADASLGPSTAAIVDEAEKRGIPYMRLSAGSLVQLGYG------SR 191

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
             R++          A  I    DK  +K++  +AGV +  G   +++ A+   E A+D+
Sbjct: 192 QKRIQATETDRTSAIAVEI--ACDKDLTKEILSDAGVPVPEG--TVVQSAEDAWEAAQDL 247

Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           GYPV+IK   G  G+G+ I    ++ IE    S+ EAA       ++VE+FI        
Sbjct: 248 GYPVVIKPYDGNHGRGVTINILTRDEIE----SAYEAAVEESSG-VIVERFIT------- 295

Query: 183 QGTTYKFLIQTEKEFEYAKLLPP 205
            G  ++ L+   K    A+ +P 
Sbjct: 296 -GRDHRLLVVGGKVVAVAERVPA 317

Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in E. coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. This model makes the designation as cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions [Cellular processes, Biosynthesis of natural products]. Length = 864

>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 52.4 bits (127), Expect = 7e-08
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
            L+  GV  +G + + I    D+    KL ++ G+   P  NG     +  +E+A +IGY
Sbjct: 648 ALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPP--NGTATSVEEALEVAEEIGY 705

Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           PV+++ S   GG+ M I  +++E     +    EA     D  +L++KF++    +++
Sbjct: 706 PVLVRPSYVLGGRAMEIVYDEEELERYMR----EAVKVSPDHPVLIDKFLEGAIEVDV 759

Length = 1066

>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 15  LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGY----GFLSENASFVSRLKEEG 70
            AD+   + P V   +YI  D+++D  ++ + D + P        L++N     R +E G
Sbjct: 42  FADKFY-VVPKVTDPNYI--DRLLDICKKEKIDLLIPLIDPELPLLAQNRD---RFEEIG 95

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-NGIIRDADHCVEIARDIGYPVMIK 129
           V  +  + E I    DK  + +  KE G+     +    + D    +     + +P+ +K
Sbjct: 96  VKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGE-LQFPLFVK 154

Query: 130 ASAGGGGKGMRIANNDQE 147
              G    G+   N+ +E
Sbjct: 155 PRDGSASIGVFKVNDKEE 172

Length = 326

>gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed

 Score = 51.7 bits (125), Expect = 8e-08
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVEIARDIGYPVMIKASAGGGGKG 138
            M DK+ +K+L   AG+ + P    ++   D       EI   +G PV +K +  G   G
Sbjct: 121 SM-DKILTKRLLAAAGIPVAPYV--VLTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVG 177

Query: 139 MRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           +    N++E          + A  + D ++LVE+ IK  R IE 
Sbjct: 178 ISKVKNEEELAAAL-----DLAFEY-DRKVLVEQGIK-GREIEC 214

Length = 333

>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
            L+E GV  +G + E I    D+ +  +L  E G+             +  VE A +IGY
Sbjct: 648 ALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASEIGY 705

Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           PV+++ S   GG+ M I  N++E     +    EA     +  +L++K++++   +++
Sbjct: 706 PVLVRPSYVLGGRAMEIVYNEEELRRYLE----EAVEVSPEHPVLIDKYLEDAVEVDV 759

Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050

>gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 24/167 (14%)

Query: 48  AVHPGYGFLSENASFVSRLKEEGVVFIGP--TAECIRGMGDKLESKKLAKEAGVNIIP-- 103
            +H  YG   E+ +    L+  G+ + G    A  +  M DKL +K L K  G+      
Sbjct: 70  VLHGRYG---EDGTIQGLLELMGIPYTGSGVLASAL-SM-DKLLTKLLWKALGLPTPDYI 124

Query: 104 GFNGIIRDADH--CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA 161
                   AD   C ++A  +G+PV++K +  G   G+    +++E            A 
Sbjct: 125 VLTQNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDE-----AF 179

Query: 162 SFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPK 208
            + D+ +LVE+FIK  R +E+       ++  E+     +++P    
Sbjct: 180 EY-DEEVLVEQFIK-GRELEVS------ILGNEEALPIIEIVPEIEG 218

This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315

>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
            A  + +L     VF  P+ + +R   D+L  K+   +AG+ + P    ++  A+     
Sbjct: 74  PAEALEKLAASVKVF--PSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAA 129

Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
           A D+G+P ++K   GG  GKG     +D +           AA        ++E+F+ 
Sbjct: 130 AADLGFPAVLKTRRGGYDGKGQWRIRSDADL-------ELRAAGLAEGGVPVLEEFVP 180

Length = 375

>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 16  ADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPG-YGFLSENASFVSRLKEEGVVFI 74
           A EA  +   +      + + ++   ++   D V  G    L   A  V  L+  G+   
Sbjct: 38  ALEAYLVNIEIDT----DHEALVAFAKEKNVDLVVVGPEAPLV--AGVVDALRAAGIPVF 91

Query: 75  GPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARDIGYPVMIKASAG 133
           GPT    +  G K  +K   K+ G   IP     +  D +       + G P+++KA   
Sbjct: 92  GPTKAAAQLEGSKAFAKDFMKKYG---IPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGL 148

Query: 134 GGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKF 173
             GKG+ +A   +EA        +  A      R+++E+F
Sbjct: 149 AAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEF 188

Length = 428

>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
           +L+  GV    P+ + +  + D+L  K+  ++ G+ + P F  +I+D +      +++G+
Sbjct: 78  KLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPV-PPFL-VIKDEEELDAALQELGF 134

Query: 125 PVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
           PV++KA  GG  G+G     N+ +          +AA   GD   +VE+F+ 
Sbjct: 135 PVVLKARTGGYDGRGQYRIRNEADL--------PQAAKELGDRECIVEEFVP 178

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 352

>gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
            A  +  L     V  GP  + +    D+L  K+   + G+ +   F  ++  A+     
Sbjct: 75  PAEALDALAARVPVPPGP--DALAIAQDRLTEKQFLDKLGIPV-APFA-VVDSAEDLEAA 130

Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
             D+G P ++K   GG  GKG  +  + ++         + A A  G    ++E+F+
Sbjct: 131 LADLGLPAVLKTRRGGYDGKGQWVIRSAEDL--------EAAWALLGSVPCILEEFV 179

Length = 372

>gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
           V  L+E G+   GPT E  +  G K  +K   K  G+           D +      ++ 
Sbjct: 81  VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV--FTDPEEAKSYIQEK 138

Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFK-LSSQEAAASFGDDRILVEKFI 174
           G P+++KA     GKG+ +A  ++EAI+  + +  Q+   +   +R+++E+F+
Sbjct: 139 GAPIVVKADGLAAGKGVIVAKTNEEAIKAVEDILEQKFGDAG--ERVVIEEFL 189

Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 422

>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           DK   ++L + AG+ + P F  ++ D +     A +IG+PV++K   G G  G+   ++ 
Sbjct: 4   DKALMRELLRAAGLPVPPFF--LVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSA 61

Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFI 174
            E           AA        LVE++I
Sbjct: 62  AELEAALA---ALAAEVEDTREYLVEEYI 87

This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183

>gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 32  INVDKIIDAIRQTRADAVHP-GYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLES 90
             +DK +      +AD V P  +G   E+ +    L+  G+ ++G       G  DK+ +
Sbjct: 48  WMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVT 107

Query: 91  KKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEA 148
           K+L K  G+ + P          +    E+   +G+P+ +K +  G   G    N + + 
Sbjct: 108 KRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDL 167

Query: 149 IEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
               +L+ +       D  +L E+ I   R IE+
Sbjct: 168 QSALELAFKY------DRDVLREQGI-TGREIEV 194

Length = 317

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 22/46 (47%)

Query: 198 EYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
           E  KL   K     +  L APMPG V SV  K G ++  G  L V+
Sbjct: 561 ELDKLGGAKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVL 606

Length = 645

>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 109 IRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR 167
               +  +E  +++GYP ++KA  GG  GKG  +  ++ +          +A    G   
Sbjct: 14  AESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADI--------PQAWEELGGGP 65

Query: 168 ILVEKFIK 175
           ++VE+F+ 
Sbjct: 66  VIVEEFVP 73

This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171

>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
           V   +  G+   GPT    +  G K  +K      G   IP        DA+  +    +
Sbjct: 79  VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYG---IPTAAYETFTDAEEALAYLDE 135

Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
            G P+++KA     GKG+ +A   +EA              FGD   R+++E+F
Sbjct: 136 KGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNK--FGDAGARVVIEEF 187

Length = 420

>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 62  FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE-IAR 120
           F+   + +GV  I    + IR   +KL + +L  +AG+ + P    I RD D   E +A 
Sbjct: 96  FLRLAERKGVPVIND-PQSIRRCRNKLYTTQLLAKAGIPVPP--TLITRDPDEAAEFVAE 152

Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPR 178
            +G+PV++K   G GG+G+ +  +    +    LS  E     G   I+V+++I   +
Sbjct: 153 HLGFPVVLKPLDGSGGRGVFLVEDADPEL----LSLLETLTQEGRKLIIVQEYIPKAK 206

Length = 318

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
           + APMPG V  V  K GD++  GQ L V+
Sbjct: 2   VTAPMPGTVVKVLVKEGDKVEAGQPLAVL 30

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 93  LAKEAGVNIIPGFNGIIRDADH---CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
           L K AG+ + P F  + R+        ++   +GYPV +K +  G   G+    + +E  
Sbjct: 1   LLKAAGIPVAP-FIVLTREDWVLATKEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQ 59

Query: 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
              + + Q       D+++L+E+ I+  R IE 
Sbjct: 60  SAIEEAFQY------DNKVLIEEAIEG-REIEC 85

This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201

>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 37/169 (21%)

Query: 24  PPVAAQSYIN------VDKIIDAIRQTRADAVHPGYG---------FLSENASFVSRLKE 68
           P  A ++YI       V+++I    + R DA+ P  G          L+E+      L++
Sbjct: 74  PETADRTYIAPMTPELVEQVIA---KERPDALLPTMGGQTALNLAVALAESGI----LEK 126

Query: 69  EGVVFIGPTAECIRGMGDKLESKKLAKEA----GVNIIPGFNGIIRDADHCVEIARDIG- 123
            GV  IG   + I     K E ++L K+A    G+   P  +GI    D C EIA DIG 
Sbjct: 127 YGVELIGAKLDAI----KKAEDRELFKQAMEKIGLKTPP--SGIATTLDECFEIAEDIGE 180

Query: 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEK 172
           +P++I+ +   GG G  IA N +E    F+   +   A+    ++LVEK
Sbjct: 181 FPLIIRPAFTLGGTGGGIAYNKEE----FETICKAGLAASITSQVLVEK 225

Length = 1102

>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 75  GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG 134
           G + + I    D+     +  E  +    G  GI R     + IA+ IGYPV+++ S   
Sbjct: 691 GTSPDSIDAAEDRERFNAILNELKIEQPKG--GIARSEADALAIAKRIGYPVVVRPSYVL 748

Query: 135 GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR-ILVEKFIKNPRHIEI 182
           GG+ M I  +D +          E A     +R +LV+K++ +   I++
Sbjct: 749 GGRAMEIVYSDDKLKTYL-----ETAVEVDPERPVLVDKYLSDATEIDV 792

Length = 1102

>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 66  LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
           L++ GV  +G   E I+   D+   + L KE G  +    + I+   +  +  A  IG+P
Sbjct: 108 LEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV--PESEIVTSVEEALAFAEKIGFP 165

Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
           ++++ +   GG G  IA N +E  + FK   Q   AS      L+E+ I   + IE
Sbjct: 166 IIVRPAYTLGGTGGGIAENLEELEQLFK---QGLQASPIHQ-CLLEESIAGWKEIE 217

Length = 1068

>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 21/143 (14%)

Query: 58  ENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE 117
           E AS V+R     +       E IR   DK    +  ++ G+++ P  + +   A   ++
Sbjct: 83  EVASEVAR----RLGLPAANTEAIRTCRDKKRLARTLRDHGIDV-PRTHALALRAV-ALD 136

Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP 177
               + YPV++K   G G  G+R+  +  EA          A    G    LV+ +++  
Sbjct: 137 ALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHC-----AALRRAGTRAALVQAYVEGD 191

Query: 178 ----------RHIEIQGTTYKFL 190
                     R  ++ G T K L
Sbjct: 192 EYSVETLTVARGHQVLGITRKHL 214

Length = 887

>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 85  GDKLESKKLAKEAGVNIIPGFN-GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN 143
           G K  +K   K  G   IP        D +      R+ G+P ++KA     GKG+ +A 
Sbjct: 1   GSKSFAKDFMKRHG---IPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAM 57

Query: 144 NDQEAIEGFKLSSQEAAASFGDDRILVEKF 173
           +++EAI+      ++       + +++E+F
Sbjct: 58  DNEEAIKAVDEILEQKKFGEAGEPVVIEEF 87

Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786). Length = 193

>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 60  ASFVSRLKEE-GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
           A + +RL E  GV  I  +   I   GDK+ +     +AGV   P    +  D +  +++
Sbjct: 61  ALYSARLLEALGVPVINSS-HVIEACGDKIFTYLKLAKAGVPT-PR-TYLAFDREAALKL 117

Query: 119 ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP- 177
           A  +GYPV++K   G  G+ +     D++ +E   L  +E           ++++I  P 
Sbjct: 118 AEALGYPVVLKPVIGSWGR-LVALIRDKDELESL-LEHKEVLGGSQHKLFYIQEYINKPG 175

Query: 178 RHIEI 182
           R I +
Sbjct: 176 RDIRV 180

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280

>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 89  ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKAS--AGGGGK--GMRIAN 143
           ++K+L  + G+ + PG+  +    +   E A+++G  PV++KA   AGG GK  G+++A 
Sbjct: 7   QAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAK 64

Query: 144 NDQEAIE 150
           + +EA E
Sbjct: 65  SPEEAKE 71

Length = 387

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 204  PPKPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
              + K D     H  APMPG V +V  K GD++  G  L V+
Sbjct: 1066 AAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVI 1107

Length = 1146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	100.0
KOG0238|consensus	670		100.0
COG0439	449	AccC Biotin carboxylase [Lipid metabolism]	100.0
PRK08654	499	pyruvate carboxylase subunit A; Validated	100.0
PRK08462	445	biotin carboxylase; Validated	100.0
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	100.0
PRK07178	472	pyruvate carboxylase subunit A; Validated	100.0
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	100.0
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	100.0
PRK08463	478	acetyl-CoA carboxylase subunit A; Validated	100.0
PRK05586	447	biotin carboxylase; Validated	100.0
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	100.0
KOG0369|consensus	1176		99.98
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.97
PRK12999	1146	pyruvate carboxylase; Reviewed	99.97
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.97
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	99.97
PLN02257	434	phosphoribosylamine--glycine ligase	99.93
PF15632	329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	99.93
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	99.93
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	99.93
PLN02735	1102	carbamoyl-phosphate synthase	99.93
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	99.92
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	99.92
PRK13790	379	phosphoribosylamine--glycine ligase; Provisional	99.92
PRK12767	326	carbamoyl phosphate synthase-like protein; Provisi	99.92
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.92
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	99.91
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	99.91
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.91
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	99.91
COG0458	400	CarB Carbamoylphosphate synthase large subunit (sp	99.91
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	99.91
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	99.91
PLN02735	1102	carbamoyl-phosphate synthase	99.91
PRK05784	486	phosphoribosylamine--glycine ligase; Provisional	99.91
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	99.9
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	99.9
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	99.9
KOG0368|consensus	2196		99.9
PRK14568	343	vanB D-alanine--D-lactate ligase; Provisional	99.9
PLN02948	577	phosphoribosylaminoimidazole carboxylase	99.89
PRK14572	347	D-alanyl-alanine synthetase A; Provisional	99.89
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	99.89
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	99.89
PRK01966	333	ddl D-alanyl-alanine synthetase A; Reviewed	99.89
PRK14570	364	D-alanyl-alanine synthetase A; Provisional	99.89
PRK07206	416	hypothetical protein; Provisional	99.89
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	99.88
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	99.88
PRK02186	887	argininosuccinate lyase; Provisional	99.88
PRK06524	493	biotin carboxylase-like protein; Validated	99.87
TIGR01205	315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	99.86
PRK14571	299	D-alanyl-alanine synthetase A; Provisional	99.86
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	99.85
PRK06849	389	hypothetical protein; Provisional	99.84
PRK14016	727	cyanophycin synthetase; Provisional	99.82
PF02786	211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	99.81
PRK10446	300	ribosomal protein S6 modification protein; Provisi	99.79
KOG0237|consensus	788		99.78
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	99.78
TIGR03103	547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	99.78
TIGR02144	280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	99.78
TIGR00768	277	rimK_fam alpha-L-glutamate ligases, RimK family. T	99.76
PRK13278	358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	99.73
PF13535	184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	99.72
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071	194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	99.69
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	99.69
TIGR01435	737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	99.67
PRK02471	752	bifunctional glutamate--cysteine ligase/glutathion	99.67
COG0189	318	RimK Glutathione synthase/Ribosomal protein S6 mod	99.66
COG1181	317	DdlA D-alanine-D-alanine ligase and related ATP-gr	99.63
PF07478	203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	99.62
PRK13277	366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	99.56
PF08443	190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	99.55
KOG0370|consensus	1435		99.49
PF02222	172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	99.47
PLN02941	328	inositol-tetrakisphosphate 1-kinase	99.46
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	99.43
PRK12458	338	glutathione synthetase; Provisional	99.36
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	99.34
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	99.33
TIGR01380	312	glut_syn glutathione synthetase, prokaryotic. This	99.32
PRK05246	316	glutathione synthetase; Provisional	99.3
KOG0370|consensus	1435		99.28
PF13549	222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	99.27
PF02655	161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	99.23
COG3919	415	Predicted ATP-grasp enzyme [General function predi	99.2
TIGR02291	317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	99.0
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	98.96
PRK14046	392	malate--CoA ligase subunit beta; Provisional	98.93
PF08442	202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	98.91
COG1759	361	5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu	98.9
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	98.81
COG1821	307	Predicted ATP-utilizing enzyme (ATP-grasp superfam	98.77
COG2232	389	Predicted ATP-dependent carboligase related to bio	98.72
PF14397	285	ATPgrasp_ST: Sugar-transfer associated ATP-grasp	98.56
PLN02235	423	ATP citrate (pro-S)-lyase	98.55
PF02955	173	GSH-S_ATP: Prokaryotic glutathione synthetase, ATP	98.28
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	98.27
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	98.02
PF05770	307	Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-	98.0
PRK06748	83	hypothetical protein; Validated	97.95
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	97.91
PF14398	262	ATPgrasp_YheCD: YheC/D like ATP-grasp	97.85
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.81
KOG0238|consensus	670		97.56
KOG0369|consensus	1176		97.5
PF14403	445	CP_ATPgrasp_2: Circularly permuted ATP-grasp type	97.49
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	97.46
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	97.44
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	97.43
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	97.4
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	97.31
PRK14042	596	pyruvate carboxylase subunit B; Provisional	97.3
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	97.05
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	97.03
PF11379	355	DUF3182: Protein of unknown function (DUF3182); In	97.02
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	96.97
PRK14040	593	oxaloacetate decarboxylase; Provisional	96.95
PF14305	239	ATPgrasp_TupA: TupA-like ATPgrasp	96.93
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	96.9
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.86
PRK12999	1146	pyruvate carboxylase; Reviewed	96.84
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.76
PRK07051	80	hypothetical protein; Validated	96.75
KOG2799|consensus	434		96.74
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.64
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	96.53
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.51
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	96.48
PRK07051	80	hypothetical protein; Validated	96.34
PRK06748	83	hypothetical protein; Validated	96.3
PF06849	124	DUF1246: Protein of unknown function (DUF1246); In	96.13
PRK09282	592	pyruvate carboxylase subunit B; Validated	96.0
KOG3895|consensus	488		95.98
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	95.65
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	95.55
PF02750	203	Synapsin_C: Synapsin, ATP binding domain; InterPro	95.22
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.16
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	95.06
PF03133	292	TTL: Tubulin-tyrosine ligase family; InterPro: IPR	94.74
PRK10476	346	multidrug resistance protein MdtN; Provisional	94.62
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	94.58
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	94.43
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	94.2
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	94.04
PRK11578	370	macrolide transporter subunit MacA; Provisional	93.7
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	93.69
PRK15136	390	multidrug efflux system protein EmrA; Provisional	93.56
KOG1447|consensus	412		93.51
PRK03598	331	putative efflux pump membrane fusion protein; Prov	93.49
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	93.41
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	93.38
PRK09859	385	multidrug efflux system protein MdtE; Provisional	93.32
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.26
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	93.09
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	92.9
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	92.89
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.67
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.66
PRK09783	409	copper/silver efflux system membrane fusion protei	92.49
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	92.22
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	91.96
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	91.73
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	91.06
PF01820	117	Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; In	90.69
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	90.55
KOG0559|consensus	457		90.45
COG2308	488	Uncharacterized conserved protein [Function unknow	89.98
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	89.67
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	89.56
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	89.29
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	88.92
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	88.29
PRK14042	596	pyruvate carboxylase subunit B; Provisional	88.07
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	87.86
PRK13380	144	glycine cleavage system protein H; Provisional	87.7
PRK15136	390	multidrug efflux system protein EmrA; Provisional	87.53
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	87.49
PRK10476	346	multidrug resistance protein MdtN; Provisional	87.47
PRK09282	592	pyruvate carboxylase subunit B; Validated	87.26
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	86.47
PRK14040	593	oxaloacetate decarboxylase; Provisional	86.45
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	85.73
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	85.68
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	85.59
PF04174	330	CP_ATPgrasp_1: A circularly permuted ATPgrasp ; In	85.48
PRK03598	331	putative efflux pump membrane fusion protein; Prov	85.3
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	84.85
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	83.93
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	83.8
TIGR02049	403	gshA_ferroox glutamate--cysteine ligase, T. ferroo	83.79
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	83.78
PRK09783	409	copper/silver efflux system membrane fusion protei	82.98
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	82.52
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	81.69
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	81.53
KOG2156|consensus	662		80.56

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=100.00  E-value=3.3e-39  Score=274.02  Aligned_cols=210  Identities=51%  Similarity=0.844  Sum_probs=195.8

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      |||||.|.+++|+++||+++.++|.+..+||++.+.|++.+++.+.++|+|+|||++||+.+++.++..|+.++||++.+
T Consensus        30 AVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~a  109 (645)
T COG4770          30 AVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGA  109 (645)
T ss_pred             EEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      ++.+.||...|.++.++|+|+.|++.....+.+++..+++++|||++||+..|+||+|++++.+.+|+.+++.....++.
T Consensus       110 I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~  189 (645)
T COG4770         110 IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAK  189 (645)
T ss_pred             HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecceee---cchhhhhh----hhcCCCCCCCC
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLI---QTEKEFEY----AKLLPPKPKLD  210 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v---~~~~~~~~----~~~~~~~~~~~  210 (246)
                      .+|+++.++||+|+...+++.++|++|.++.   ..+..|+.    +|++..+|.+-
T Consensus       190 asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~  246 (645)
T COG4770         190 ASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPF  246 (645)
T ss_pred             hhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCC
Confidence            9999999999999999999999999999873   25555554    45555444433

>KOG0238|consensus

Probab=100.00  E-value=1.8e-38  Score=265.96  Aligned_cols=199  Identities=54%  Similarity=0.864  Sum_probs=190.0

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      |||||.|.++.|+++||+++++++.+...+|++.+.+++.+++.+..+|+|++||++|+..+++.|+..|+.++||++.+
T Consensus        26 AV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~a  105 (670)
T KOG0238|consen   26 AVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSA  105 (670)
T ss_pred             EEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchHHHHHHHHcCCeEECCCHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      ++-+.||...|++++.+|+|+.|++.....|.+++...++++|||+++|+..|+||+|++++.+.+|+++.++....++.
T Consensus       106 IrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~  185 (670)
T KOG0238|consen  106 IRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAA  185 (670)
T ss_pred             HHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecceeec---chhhhhh
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ---TEKEFEY  199 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~---~~~~~~~  199 (246)
                      .+|+++.+|+|+||...+++.|++++|+++-.   .++.|..
T Consensus       186 ~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSv  227 (670)
T KOG0238|consen  186 KSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSV  227 (670)
T ss_pred             hhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccch
Confidence            99999999999999999999999999998832   4555544

>COG0439 AccC Biotin carboxylase [Lipid metabolism]

Probab=100.00  E-value=2.4e-35  Score=252.49  Aligned_cols=191  Identities=49%  Similarity=0.863  Sum_probs=181.5

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +|||+.|.++.|..+||+++.+++.....+|++.++++..++..+.|+|+|++||++++..+++.+++.|+.++||++++
T Consensus        30 av~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~  109 (449)
T COG0439          30 AVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEA  109 (449)
T ss_pred             EEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHH
Confidence            58999999999999999999999767778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      ++.|.||..+|++++++|+|+||+....+.+.+++.++++.+||||||||..|+||+|+++|++.++|.+++..+..++.
T Consensus       110 i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~  189 (449)
T COG0439         110 IRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAE  189 (449)
T ss_pred             HHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999865456888999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecceee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLI  191 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v  191 (246)
                      ..|+++.+++|+|+.+.+++.+++++|+.+.
T Consensus       190 ~~fg~~~v~iEk~i~~~rhievqv~gD~~g~  220 (449)
T COG0439         190 AAFGNPRVYLEKFIEGPRHIEVQVLGDGHGN  220 (449)
T ss_pred             HhcCCCcEEeeeeccCCceEEEEEEEcCccc
Confidence            8898888999999998889999999999863

>PRK08654 pyruvate carboxylase subunit A; Validated

Probab=100.00  E-value=2.6e-34  Score=253.27  Aligned_cols=190  Identities=44%  Similarity=0.783  Sum_probs=174.6

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +||++.|.++++.++||+++.+++.....+|++.+.+++++++.++|+|+|++|+.+|+..+++.+++.|++++|+++++
T Consensus        30 ~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~  109 (499)
T PRK08654         30 AVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDV  109 (499)
T ss_pred             EEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHH
Confidence            46888899999999999999998877778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +..++||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.++++.....+.
T Consensus       110 i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~  189 (499)
T PRK08654        110 IEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQ  189 (499)
T ss_pred             HHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999763236889999999999999999999999999999999999999999998876665


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..++++.+++|+|+.+++|+++++++|+.+
T Consensus       190 ~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G  219 (499)
T PRK08654        190 SAFGDSTVFIEKYLEKPRHIEIQILADKHG  219 (499)
T ss_pred             HhCCCCeEEEEeCCCCCcEEEEEEEEcCCC
Confidence            566667899999999889999999998754

>PRK08462 biotin carboxylase; Validated

Probab=100.00  E-value=5.2e-33  Score=243.82  Aligned_cols=189  Identities=41%  Similarity=0.721  Sum_probs=170.4

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ++|++.|.++++.++||+.+.+++...+.+|.+.+.++++|+++++|+|+|++|+++++..+++.+++.|++++|+++++
T Consensus        32 ~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~  111 (445)
T PRK08462         32 AIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEV  111 (445)
T ss_pred             EEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHH
Confidence            47889999999999999999998777777899999999999999999999999998999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +.+++||..++++|+++|||+|++++..+.+.+++.+++++++||+|+||.+|+||+|+++++|.+|+..++........
T Consensus       112 ~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~  191 (445)
T PRK08462        112 MALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEAL  191 (445)
T ss_pred             HHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999754457889999999999999999999999999999999999999999877655433


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ..++++.+++|+||++++|++++++++..
T Consensus       192 ~~~~~~~vlvEe~i~g~~e~~v~v~~~~~  220 (445)
T PRK08462        192 SAFGDGTMYMEKFINNPRHIEVQILGDKH  220 (445)
T ss_pred             hccCCCcEEEeccCCCCeEEEEEEEECCC
Confidence            34445679999999978899999998754

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=100.00  E-value=9.7e-33  Score=242.68  Aligned_cols=190  Identities=45%  Similarity=0.758  Sum_probs=172.8

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ++|++.|.++++.++||+.+.++|...+.+|++.+.++++|+++++|+|+|++++++|+..+++.+++.|++++|+++++
T Consensus        33 ~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~a  112 (467)
T PRK12833         33 AACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQT  112 (467)
T ss_pred             EEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHH
Confidence            36788899999999999999887766777899999999999999999999999999999988899999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +++++||..+|++|+++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|+++++|.+|+.+++......+.
T Consensus       113 i~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~  192 (467)
T PRK12833        113 IRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQ  192 (467)
T ss_pred             HHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999743467899999999999999999999999999999999999999999988766555


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++..++||+|+++++|+++++++|+..
T Consensus       193 ~~~~~~~vlvEefi~~~~ei~v~v~~dg~~  222 (467)
T PRK12833        193 AAFGDGGVYLERFIARARHIEVQILGDGER  222 (467)
T ss_pred             HhcCCCcEEEEecCCCCEEEEEEEEeCCCc
Confidence            556667899999999889999999998764

>PRK07178 pyruvate carboxylase subunit A; Validated

Probab=100.00  E-value=1e-32  Score=242.80  Aligned_cols=189  Identities=42%  Similarity=0.694  Sum_probs=171.4

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ++|+|.|+.+++.++||+++.+|+... .+|++.+.++++|+++++|+|+|++|+++|+..+++.+++.|++++|+++++
T Consensus        30 ~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~  108 (472)
T PRK07178         30 AIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEV  108 (472)
T ss_pred             EEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHH
Confidence            478899999999999999999986544 6899999999999999999999999999999989999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +..++||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||+.|+||+|++++++.+|+.++++.+...+.
T Consensus       109 i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~  188 (472)
T PRK07178        109 IRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEAT  188 (472)
T ss_pred             HHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999753347889999999999999999999999999999999999999999988776655


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..++...+++|+|+.+++|+++++++++.+
T Consensus       189 ~~~~~~~v~iE~~i~~~~eiev~v~~d~~G  218 (472)
T PRK07178        189 KAFGSAEVFLEKCIVNPKHIEVQILADSHG  218 (472)
T ss_pred             HhcCCCCEEEEEcCCCCeEEEEEEEEECCC
Confidence            556567899999998899999999987654

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=100.00  E-value=6.2e-33  Score=243.11  Aligned_cols=208  Identities=39%  Similarity=0.699  Sum_probs=190.2

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcC-CCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAA-QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE   79 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~   79 (246)
                      |||+..|..+.|...||++|.++..-.+ .+|++++.+++++++.+.|+|+|++|+++|+.++++.|.+.|+.++||.++
T Consensus        35 AIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e  114 (1149)
T COG1038          35 AIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPE  114 (1149)
T ss_pred             EEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHH
Confidence            6899999999999999999999876666 569999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      .+..+.||...+.+..++|+|+.|+....+.+.+++.++++..|||+++|...|+||+|++++.+.+++.+++.+...++
T Consensus       115 ~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEA  194 (1149)
T COG1038         115 VLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEA  194 (1149)
T ss_pred             HHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887677888999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeecceeec---chhhhhh----hhcCCCCCC
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ---TEKEFEY----AKLLPPKPK  208 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~---~~~~~~~----~~~~~~~~~  208 (246)
                      +..|+++.+.||+|+.+.+++.|++++|.++..   .++.|+.    ++.+.-+|.
T Consensus       195 kaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa  250 (1149)
T COG1038         195 KAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPA  250 (1149)
T ss_pred             HHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeEEecCC
Confidence            999999999999999999999999999988732   4555544    355443333

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=100.00  E-value=5.3e-32  Score=237.51  Aligned_cols=188  Identities=49%  Similarity=0.856  Sum_probs=168.2

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++++.|+++++.++||+++.+++.....+|++.+.++++|+++++|+|+|++++.+|+..+++.+++.|++++|++++++
T Consensus        31 ~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~  110 (449)
T TIGR00514        31 VHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESI  110 (449)
T ss_pred             EEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHH
Confidence            45666889999999999999877667778999999999999999999999999888998888999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++.+++++++||+|+||.+++||+|++++++.+|+..+++.+......
T Consensus       111 ~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~  190 (449)
T TIGR00514       111 RLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKA  190 (449)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997533577899999999999999999999999999999999999999999887655444


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecce
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .++...++||+||++++|+++++++++.
T Consensus       191 ~~~~~~vlvEe~i~g~~e~~v~v~~d~~  218 (449)
T TIGR00514       191 AFGNDGVYIEKYIENPRHVEIQVLADKY  218 (449)
T ss_pred             hCCCCCEEEEECCCCCeEEEEEEEEcCC
Confidence            4445789999999977899999998754

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK08463 acetyl-CoA carboxylase subunit A; Validated

Probab=100.00  E-value=4.9e-32  Score=238.74  Aligned_cols=189  Identities=40%  Similarity=0.739  Sum_probs=167.5

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +||++.|.++++.++||+++.+++... .+|+|.+.++++|+++++|+|+|++++++|+..+++.+++.|++++|+++++
T Consensus        30 ~v~~~~d~~~~~~~~AD~~~~i~~~~~-~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~  108 (478)
T PRK08463         30 AIYTEPDRECLHVKIADEAYRIGTDPI-KGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEV  108 (478)
T ss_pred             EEECCCccCCcchhhcCEEEEcCCCch-hcccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHH
Confidence            367778888999999999999986543 6799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccc-cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGI-IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      +..++||..++++++++|||+|+++... ..+.+++.++++.+|||+|+||..|+||+|++++++.+|+..++......+
T Consensus       109 i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a  188 (478)
T PRK08463        109 IRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREA  188 (478)
T ss_pred             HHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998864311 257888988999999999999999999999999999999999998766555


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ...++++.++||+||.+++|+++++++++.+
T Consensus       189 ~~~~~~~~vlvEefI~~~~~iev~v~~d~~g  219 (478)
T PRK08463        189 LAYFNNDEVFMEKYVVNPRHIEFQILGDNYG  219 (478)
T ss_pred             HHhcCCCcEEEEecCCCCeEEEEEEEEcCCC
Confidence            4445567899999999788999999988644

>PRK05586 biotin carboxylase; Validated

Probab=100.00  E-value=9.9e-32  Score=235.57  Aligned_cols=189  Identities=48%  Similarity=0.837  Sum_probs=170.0

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ||++.|.++++..+||+++.+++..+..+|.+.+.++++|+++++|+|+|++++++|+..++..++..|++++|++++++
T Consensus        31 v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~  110 (447)
T PRK05586         31 VYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETI  110 (447)
T ss_pred             EcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHH
Confidence            56788899999999999999877666778999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++.++++.++||+||||++|+||+|++++++.+|+.++++........
T Consensus       111 ~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~  190 (447)
T PRK05586        111 ELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKA  190 (447)
T ss_pred             HhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997433578899999889999999999999999999999999999999999887665544


Q ss_pred             hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .++++.+++|+||++++|++++++++..+
T Consensus       191 ~~~~~~vivEe~i~g~~ei~v~v~~d~~G  219 (447)
T PRK05586        191 AFGDDSMYIEKFIENPKHIEFQILGDNYG  219 (447)
T ss_pred             hcCCCeEEEEecCCCCeEEEEEEEECCCC
Confidence            45556899999999668999999988643

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=100.00  E-value=5e-31  Score=231.75  Aligned_cols=189  Identities=48%  Similarity=0.821  Sum_probs=168.5

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++++.|.++++.++||+.+.+++..+..+|.+.+.++++|+++++|+|+|++++.+++..++..+++.|++++|++++++
T Consensus        31 ~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~  110 (451)
T PRK08591         31 VHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETI  110 (451)
T ss_pred             EcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHH
Confidence            46677888899999999998866666678999999999999999999999998888988888999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++.++++.++||+|+||+.++||+|+.+++|.+|+..+++.+......
T Consensus       111 ~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~  190 (451)
T PRK08591        111 RLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKA  190 (451)
T ss_pred             HHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997433578899999999999999999999999999999999999999999987665444


Q ss_pred             hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+++..++||+||++++|+++++++|+.+
T Consensus       191 ~~~~~~vlvEe~i~g~~e~~v~v~~d~~g  219 (451)
T PRK08591        191 AFGNPGVYMEKYLENPRHIEIQVLADGHG  219 (451)
T ss_pred             hcCCCCEEEEeCCCCCcEEEEEEEEcCCC
Confidence            45567899999999778999999988753

>KOG0369|consensus

Probab=99.98  E-value=8.1e-32  Score=232.43  Aligned_cols=190  Identities=40%  Similarity=0.742  Sum_probs=182.0

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcC-CCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAA-QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE   79 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~   79 (246)
                      ||||..|..+.|...||++|.++..-.+ ..|+.++.++++|+++++|+|+|++||++|+..+++.+...|+.++||+++
T Consensus        61 AiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspe  140 (1176)
T KOG0369|consen   61 AIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPE  140 (1176)
T ss_pred             EEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHH
Confidence            6899999999999999999999865544 569999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      .+..+.||...|.+..++|+|+.|+.-..+++.+|+.+++++.|+|+|+|.++|+||+|++++++.++++++|++...++
T Consensus       141 Vi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA  220 (1176)
T KOG0369|consen  141 VIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEA  220 (1176)
T ss_pred             HHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHH
Confidence            99999999999999999999999987778999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ...|++..++||+|++..+++.|++++|.++
T Consensus       221 ~aaFGnG~~FvEkF~ekPrHIEvQllgD~~G  251 (1176)
T KOG0369|consen  221 LAAFGNGTLFVEKFLEKPRHIEVQLLGDKHG  251 (1176)
T ss_pred             HHhcCCceeeHHhhhcCcceeEEEEecccCC
Confidence            9999999999999999999999999999887

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.97  E-value=1.4e-30  Score=245.68  Aligned_cols=190  Identities=39%  Similarity=0.738  Sum_probs=173.9

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCC---cCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCC
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPV---AAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPT   77 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~   77 (246)
                      +||++.|..++|...||++|.+++..   ...+|+|.+.++++|+++++|+|+|++|+++|+..+++.+++.|++++|++
T Consensus        27 av~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps  106 (1143)
T TIGR01235        27 AIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPK  106 (1143)
T ss_pred             EEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCC
Confidence            57899999999999999999998653   236799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHH
Q psy10619         78 AECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQ  157 (246)
Q Consensus        78 ~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~  157 (246)
                      +++++.++||..++++++++|||+|+++...+.+.+++.++++++|||+||||..|+||+|++++++.+|+.+++..+..
T Consensus       107 ~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~  186 (1143)
T TIGR01235       107 AEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKS  186 (1143)
T ss_pred             HHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999753456889999999999999999999999999999999999999999999877


Q ss_pred             HHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        158 EAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       158 ~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ++...++++.++||+||++++|++|++++|+.+
T Consensus       187 ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G  219 (1143)
T TIGR01235       187 EAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHG  219 (1143)
T ss_pred             HHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCC
Confidence            766667778899999999789999999998755

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=99.97  E-value=3.2e-30  Score=244.26  Aligned_cols=190  Identities=45%  Similarity=0.786  Sum_probs=172.8

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCc-CCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE   79 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~   79 (246)
                      +||++.|+++++..+||+++.+++... ..+|++.+.++++|+++++|+|+|++|+++|+..+++.+++.|++++|++++
T Consensus        33 av~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~e  112 (1146)
T PRK12999         33 AIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAE  112 (1146)
T ss_pred             EEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHH
Confidence            478999999999999999999986533 3679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      ++..++||..+|++++++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.++++.+...+
T Consensus       113 ai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea  192 (1146)
T PRK12999        113 VLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREA  192 (1146)
T ss_pred             HHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998875325789999999999999999999999999999999999999999999887766


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ...+++..+++|+||++++|+++++++|+.+
T Consensus       193 ~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G  223 (1146)
T PRK12999        193 KAAFGNDEVYLEKYVENPRHIEVQILGDKHG  223 (1146)
T ss_pred             HhhcCCCcEEEecCCCCCeEEEEEEEEECCC
Confidence            6666677899999999778999999998654

>TIGR02712 urea_carbox urea carboxylase

Probab=99.97  E-value=1.5e-29  Score=240.89  Aligned_cols=189  Identities=43%  Similarity=0.762  Sum_probs=172.1

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ++++|.|..++++++||+.+.+++.....+|.+.+.++++|+++++|+|+|++++++|+..+++.+++.|++++|+++++
T Consensus        29 ~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea  108 (1201)
T TIGR02712        29 AVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQ  108 (1201)
T ss_pred             EEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHH
Confidence            46788888999999999999998877778899999999999999999999999999999988999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      ++++.||..+|++|+++|||+++++ ..+.+.+++.+++++++||+||||..++||+|+++|+|.+|+..+++.+.....
T Consensus       109 ~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~  187 (1201)
T TIGR02712       109 IRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGE  187 (1201)
T ss_pred             HHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998854 367899999999999999999999999999999999999999999998876555


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++..++||+||++++|+++++++|+.+
T Consensus       188 ~~f~~~~vlVEefI~g~~eveV~v~~Dg~g  217 (1201)
T TIGR02712       188 SFFGDAGVFLERFVENARHVEVQIFGDGKG  217 (1201)
T ss_pred             HhcCCCcEEEEecCCCCEEEEEEEEECCCC
Confidence            555567899999999889999999998754

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=99.97  E-value=9e-29  Score=217.52  Aligned_cols=188  Identities=48%  Similarity=0.836  Sum_probs=162.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++++.+..+.+.++||+.+.+|+.....+|.+.+.++++|+++++|+|+|++++.+|+..+++.++..|++++|++.+++
T Consensus        31 ~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~  110 (450)
T PRK06111         31 IYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADII  110 (450)
T ss_pred             EechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHH
Confidence            45566777788889999999887666678889999999999999999999988778888888899999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|++....+.+.+++.++++.++||+|+||++++||+|+.++++.+|+..+++........
T Consensus       111 ~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~  190 (450)
T PRK06111        111 AKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAAN  190 (450)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999996322468899998899999999999999999999999999999999999886543333


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecce
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .+++..++||+|+++++|+++.++.+..
T Consensus       191 ~~~~~~~lvEe~i~g~~e~~v~v~~~~~  218 (450)
T PRK06111        191 FFGNGEMYIEKYIEDPRHIEIQLLADTH  218 (450)
T ss_pred             hcCCCcEEEEcccCCCcEEEEEEEEcCC
Confidence            3345679999999966899999888753

>PLN02257 phosphoribosylamine--glycine ligase

Probab=99.93  E-value=1.3e-24  Score=188.88  Aligned_cols=170  Identities=20%  Similarity=0.236  Sum_probs=140.7

Q ss_pred             hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHH
Q psy10619         11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLES   90 (246)
Q Consensus        11 ~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~   90 (246)
                      ++...+++.+.+|+    .++.|.+.++++|+++++|+|+++.+... ...+.+.|++.|++++|++..++++++||..+
T Consensus        32 ~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~~~id~vvvg~E~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~  106 (434)
T PLN02257         32 AGIATSGDATCVPD----LDISDSAAVISFCRKWGVGLVVVGPEAPL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFM  106 (434)
T ss_pred             HHHhhhccceeecC----CCCCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHH
Confidence            55555555544432    24567899999999999999998863211 13677888999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCce
Q psy10619         91 KKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRI  168 (246)
Q Consensus        91 ~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~  168 (246)
                      |++|+++|||+|++.  .+.+.+++.+++++++||+||||..+++|+||.++++.+|+.+++..++...  .++  ...+
T Consensus       107 K~~l~~~GIptp~~~--~~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~--~fg~~~~~v  182 (434)
T PLN02257        107 KDLCDKYKIPTAKYE--TFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKG--AFGSAGSEV  182 (434)
T ss_pred             HHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhh--hccCCCCeE
Confidence            999999999999965  6889999999999999999999999999999999999999999998875421  122  3579


Q ss_pred             EEEecccCcceEEEEeeeccee
Q psy10619        169 LVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       169 lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      |||+||. |.|+++.++.|+..
T Consensus       183 lIEefi~-G~E~Sv~~~~dG~~  203 (434)
T PLN02257        183 VVEEFLD-GEEASFFALVDGEN  203 (434)
T ss_pred             EEEECCC-CCEEEEEEEECCCc
Confidence            9999999 88999999888654

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon

Probab=99.93  E-value=1.4e-25  Score=186.00  Aligned_cols=183  Identities=19%  Similarity=0.231  Sum_probs=150.2

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeC-CCHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIG-PTAE   79 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g-~~~~   79 (246)
                      .++||.+++++.+.+||+++.+|.  +..+|.  +.++++|+++++|+++|+..... .....+.|+..|++++. ++.+
T Consensus        26 i~~sh~~~~~~~~~~aD~~~~eP~--~~~~yv--~~~l~~C~~~~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~  100 (329)
T PF15632_consen   26 IIASHRDPRAPILYAADEAYLEPA--DGEEYV--DWCLDFCKEHGIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAE  100 (329)
T ss_pred             EEEEeCCCCchHHhcCceeeecCC--CHHHHH--HHHHHHHHHhCCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHH
Confidence            368999999999999999999876  555676  99999999999999999963211 23556788999999998 7799


Q ss_pred             HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc---EEEEeccCCCCceeEEeC-CHHHHHHHHH--
Q psy10619         80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP---VMIKASAGGGGKGMRIAN-NDQEAIEGFK--  153 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P---~vvKp~~g~g~~gv~~v~-~~~el~~~~~--  153 (246)
                      +++++.||..+.+.++++|+|+|+++  .+++.+++..+++++++|   ++|||+.|.||+|.++++ +.+++...+.  
T Consensus       101 ~l~~~~dK~~~y~~~~~~~ipvp~~~--~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~  178 (329)
T PF15632_consen  101 TLELADDKAAFYEFMEANGIPVPPYW--RVRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPD  178 (329)
T ss_pred             HHHHHhhHHHHHHHHHhCCCCCCCEE--EeCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCC
Confidence            99999999999999999999999976  799999999999998777   999999999999999997 6666555443  


Q ss_pred             -------HHHHHHHhhcCCCceEEEecccCcceEEEEeeecceee
Q psy10619        154 -------LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLI  191 (246)
Q Consensus       154 -------~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v  191 (246)
                             .+...........++||++|++ |.||||+++.+.+.+
T Consensus       179 ~~~i~~~~~~~~l~~~~~~~~llvMeyL~-G~EySVD~l~~~G~v  222 (329)
T PF15632_consen  179 SRRISLDELLAALQRSEEFPPLLVMEYLP-GPEYSVDCLADEGRV  222 (329)
T ss_pred             cceeCHHHHHHHHhccCCCCCcEEecCCC-CCeEEEEEEecCCEE
Confidence                   1111111111236899999999 999999999987654

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=99.93  E-value=1.2e-24  Score=188.81  Aligned_cols=153  Identities=21%  Similarity=0.308  Sum_probs=134.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619         29 QSYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF  105 (246)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~  105 (246)
                      .++.|.+.++++|+++++|+|+++.    |..   .+++.+++.|++++|++..++.+++||..+|++|+++|||+|++.
T Consensus        52 ~~~~d~~~l~~~a~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~  127 (426)
T PRK13789         52 FSILDKSSVQSFLKSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYK  127 (426)
T ss_pred             cCcCCHHHHHHHHHHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeE
Confidence            4568999999999999999999886    444   456778899999999999999999999999999999999999964


Q ss_pred             ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEE
Q psy10619        106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQ  183 (246)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~  183 (246)
                        .+++.+++.+++++++||+||||..+++|+||.++++.+|+.++++.++...  .++  ...++||+||. |.|+++.
T Consensus       128 --~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~-G~E~Sv~  202 (426)
T PRK13789        128 --TFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFME-GQEASIF  202 (426)
T ss_pred             --eeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcC-CeEEEEE
Confidence              6889999999999999999999999999999999999999999999876432  222  24799999999 7999999


Q ss_pred             eeeccee
Q psy10619        184 GTTYKFL  190 (246)
Q Consensus       184 v~~d~~~  190 (246)
                      ++.++..
T Consensus       203 ~~~dg~~  209 (426)
T PRK13789        203 AISDGDS  209 (426)
T ss_pred             EEECCCE
Confidence            9998754

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=99.93  E-value=1.6e-24  Score=186.75  Aligned_cols=172  Identities=20%  Similarity=0.330  Sum_probs=143.6

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      +..|.++++++.++||+.+..+       +.|.+.+.++++++++|+|++.++...  ......+++.|++++ ++++++
T Consensus        26 ~~~d~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e~v~--~~~~~~l~~~g~~~~-~~~~~~   95 (380)
T TIGR01142        26 IAVDRYANAPAMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIEAIA--TDALFELEKEGYFVV-PNARAT   95 (380)
T ss_pred             EEEeCCCCCchhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccCccC--HHHHHHHHhcCCeeC-CCHHHH
Confidence            4567788999999999998764       467899999999999999998875432  233456788898754 889999


Q ss_pred             HHhcCHHHHHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..+++++ +++|||+|+++  .+.+.+++.+++++++||+|+||+++++|+|+.+++|.+|+..+++.+.....
T Consensus        96 ~~~~dK~~~~~~~~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~  173 (380)
T TIGR01142        96 KLTMNREGIRRLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGAR  173 (380)
T ss_pred             HHhhCHHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcc
Confidence            9999999999985 89999999975  68899999888899999999999999999999999999999999988653211


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeec
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                        ..++.+|||+||+++.|+++.++.+
T Consensus       174 --~~~~~~ivEe~i~~~~E~sv~~~~~  198 (380)
T TIGR01142       174 --GGAGRVIVEEFIDFDYEITLLTVRH  198 (380)
T ss_pred             --CCCCCEEEEEecCCCEEEEEEEEEc
Confidence              1235799999999768999988753

This enzyme is an alternative to PurN (TIGR00639)

>PLN02735 carbamoyl-phosphate synthase

Probab=99.93  E-value=6.5e-25  Score=208.41  Aligned_cols=175  Identities=19%  Similarity=0.301  Sum_probs=145.2

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHH---------c
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKE---------E   69 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~---------~   69 (246)
                      |+++.+..+.+..+||+.|+++        ++.+.++++|+++++|+|+|.+|......   .+.+.|.+         .
T Consensus       614 v~~npetvstd~~~aD~~y~~p--------l~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~  685 (1102)
T PLN02735        614 MNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNG  685 (1102)
T ss_pred             EeCCCccccCCcccCCeEEEEe--------CCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcC
Confidence            3444444456688899999875        67899999999999999999886422111   12222332         3


Q ss_pred             CCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHH
Q psy10619         70 GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI  149 (246)
Q Consensus        70 g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~  149 (246)
                      |++++|++++++.++.||..++++|+++|||+|++.  .+.+.+++.++++.+|||+||||.+++||+|+.+++|.+|+.
T Consensus       686 gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~--~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~  763 (1102)
T PLN02735        686 NVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGG--IARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLK  763 (1102)
T ss_pred             CeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCee--EeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHH
Confidence            899999999999999999999999999999999975  678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+++.+...    .+.+.++||+||++|+|++|++++|+.+
T Consensus       764 ~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G  800 (1102)
T PLN02735        764 TYLETAVEV----DPERPVLVDKYLSDATEIDVDALADSEG  800 (1102)
T ss_pred             HHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECCCC
Confidence            999887643    2245799999998789999999998653

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=99.92  E-value=1.7e-24  Score=187.55  Aligned_cols=174  Identities=20%  Similarity=0.316  Sum_probs=144.2

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      +..|.++++++..+||..+..+       +.|.+.++++++++++|+|++..+...  ......+++.|++++ ++.+++
T Consensus        39 ~~~~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~~e~~~--~~~~~~l~~~g~~~~-~~~~a~  108 (395)
T PRK09288         39 IAVDRYANAPAMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPEIEAIA--TDALVELEKEGFNVV-PTARAT  108 (395)
T ss_pred             EEEeCCCCCchHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEeeCcCC--HHHHHHHHhcCCeeC-CCHHHH
Confidence            3456778888889999887764       357799999999999999998874321  233456677898865 889999


Q ss_pred             HHhcCHHHHHHHHH-HhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAK-EAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~-~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..+|++|. ++|||+|++.  .+++.+++.++++.++||+|+||..+++|+|+.+++|.+|+.++++.+.....
T Consensus       109 ~~~~dK~~~k~~l~~~~gip~p~~~--~~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~  186 (395)
T PRK09288        109 RLTMNREGIRRLAAEELGLPTSPYR--FADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGR  186 (395)
T ss_pred             HHHhCHHHHHHHHHHhCCCCCCCce--EECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhcc
Confidence            99999999999995 7999999965  78999999999999999999999999999999999999999999988654211


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                        .....+|||+||+++.|+++.++.++.
T Consensus       187 --~~~~~~lvEefi~~~~E~sv~~~~~~~  213 (395)
T PRK09288        187 --GGAGRVIVEEFIDFDYEITLLTVRAVD  213 (395)
T ss_pred             --ccCCCEEEEEecCCCEEEEEEEEEcCC
Confidence              113579999999988899999888755

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=99.92  E-value=4e-24  Score=186.40  Aligned_cols=158  Identities=17%  Similarity=0.216  Sum_probs=133.7

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      ++.+.+.++++|+++++|+++++.+.. -...+.+.+++.|++++|++.+++.+++||..+|++|+++|||+|++.  .+
T Consensus        47 ~~~d~~~l~~~~~~~~id~vi~~~e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~  123 (420)
T PRK00885         47 DVTDIEALVAFAKEEGIDLTVVGPEAP-LVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYE--TF  123 (420)
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECCchH-HHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeE--Ee
Confidence            457889999999999999999875321 112456788899999999999999999999999999999999999965  68


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .+.+++.++++.++||+|+||..++||+|+++++|.+|+.++++.+............+|||+|++ |.|+++.++.++.
T Consensus       124 ~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-G~E~sv~~~~~g~  202 (420)
T PRK00885        124 TDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD-GEEASFFAFVDGE  202 (420)
T ss_pred             CCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence            899999999999999999999999999999999999999999988764211001135799999999 8999999998876


Q ss_pred             ee
Q psy10619        190 LI  191 (246)
Q Consensus       190 ~v  191 (246)
                      .+
T Consensus       203 ~~  204 (420)
T PRK00885        203 NV  204 (420)
T ss_pred             ce
Confidence            53

>PRK13790 phosphoribosylamine--glycine ligase; Provisional

Probab=99.92  E-value=4.2e-24  Score=183.36  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=133.2

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      ++.|.+.++++|+++++|.|+++++.. -...+.+.|++.|++++|++.+++.+++||..+|++|+++|||+|++.  .+
T Consensus        12 ~~~d~~~l~~~~~~~~id~vi~g~E~~-l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~--~~   88 (379)
T PRK13790         12 SESDHQAILDFAKQQNVDWVVIGPEQP-LIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYK--EV   88 (379)
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECCcHH-HHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEE--EE
Confidence            457889999999999999999887431 112567789999999999999999999999999999999999999965  67


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .+.+++.++++.++||+||||..+++|+||.+++|.+|+..+++.++..   .. ...+|||+|+. |.|+++.++.++.
T Consensus        89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~---~~-~~~vlvEe~i~-G~E~sv~~~~~g~  163 (379)
T PRK13790         89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGD---EE-EGTVVFETFLE-GEEFSLMTFVNGD  163 (379)
T ss_pred             CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc---CC-CCeEEEEEccc-CceEEEEEEeeCC
Confidence            8899999999999999999999999999999999999999999886531   11 35799999999 7999999998876


Q ss_pred             e
Q psy10619        190 L  190 (246)
Q Consensus       190 ~  190 (246)
                      .
T Consensus       164 ~  164 (379)
T PRK13790        164 L  164 (379)
T ss_pred             E
Confidence            4

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional

Probab=99.92  E-value=3e-24  Score=181.39  Aligned_cols=170  Identities=16%  Similarity=0.229  Sum_probs=142.6

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +++|.++++++...||+.+.+|... +..  ..+.++++++++++|+++|+.+... ......+.++..|++++++++++
T Consensus        29 i~~d~~~~~~~~~~~d~~~~~p~~~-~~~--~~~~l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~  105 (326)
T PRK12767         29 IGADISELAPALYFADKFYVVPKVT-DPN--YIDRLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEV  105 (326)
T ss_pred             EEECCCCcchhhHhccCcEecCCCC-Chh--HHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHH
Confidence            5678889999999999998886432 222  3489999999999999999863211 11234566788899999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHH--HHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE--IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE  158 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~--~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~  158 (246)
                      +.+++||..++++|+++|+|+|+++  .+++.+++.+  +...++||+|+||.++.+|+|+++++|.+|+.+++...   
T Consensus       106 ~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~---  180 (326)
T PRK12767        106 IEICNDKWLTYEFLKENGIPTPKSY--LPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV---  180 (326)
T ss_pred             HHHHhcHHHHHHHHHHcCCCCCCEE--cccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC---
Confidence            9999999999999999999999975  6788888877  45678999999999999999999999999998887652   


Q ss_pred             HHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619        159 AAASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       159 ~~~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                             ..++||+||. |.|+++.++.+
T Consensus       181 -------~~~lvqeyi~-G~e~~v~~~~~  201 (326)
T PRK12767        181 -------PNLIIQEFIE-GQEYTVDVLCD  201 (326)
T ss_pred             -------CCeEEEeccC-CceEEEEEEEc
Confidence                   4799999998 89999999887

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=99.92  E-value=4e-24  Score=203.39  Aligned_cols=227  Identities=19%  Similarity=0.300  Sum_probs=170.9

Q ss_pred             cCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          3 FPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         3 ~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ..+.+++.  .....+|..+..+        .+.+.++++++++++|+|++.++.. ....++..+++.|++++|+++++
T Consensus       593 ~v~~npetvs~d~~~~D~ly~ep--------~~~e~vl~i~~~e~idgVI~~~gg~-~~~~la~~le~~Gi~i~G~s~~~  663 (1050)
T TIGR01369       593 MINYNPETVSTDYDTSDRLYFEP--------LTFEDVMNIIELEKPEGVIVQFGGQ-TPLNLAKALEEAGVPILGTSPES  663 (1050)
T ss_pred             EEecCCccccccccccceEEEec--------CCHHHHHHHHhhcCCCEEEEccCcH-hHHHHHHHHHHCCCcEECCCHHH
Confidence            34555554  3456788877653        4679999999999999999887542 12256778899999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +..+.||..++++|+++|||+|++.  .+.+.+++.++++++|||+||||.++.||+|+.+++|.+|+..+++.+...  
T Consensus       664 i~~~~DK~~f~~lL~~~GIp~P~~~--~v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~--  739 (1050)
T TIGR01369       664 IDRAEDREKFSELLDELGIPQPKWK--TATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEV--  739 (1050)
T ss_pred             HHHHCCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHh--
Confidence            9999999999999999999999975  689999999999999999999999999999999999999999999987542  


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecceeecchhhhhh---h--------hcCCCCC-CCCcccceeccccceeeeeee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEY---A--------KLLPPKP-KLDETKILHAPMPGLVKSVNC  228 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~~~~~~~~---~--------~~~~~~~-~~~~~~~l~sp~pg~i~~l~~  228 (246)
                        ....+++||+||++|.|++++++.++..+.....++.   .        ...|+.. .......++..+..++..+++
T Consensus       740 --s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi  817 (1050)
T TIGR01369       740 --SPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNV  817 (1050)
T ss_pred             --CCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence              2246799999999889999999998765432111110   0        1112211 111123455555556666666


Q ss_pred             cCC----CeeeCCCeEEEEcc
Q psy10619        229 KVG----DQIMEGQELCVVGK  245 (246)
Q Consensus       229 ~~G----~~v~~g~~~~v~e~  245 (246)
                      . |    |..-.++.+.+||.
T Consensus       818 ~-G~~~vqf~~~~~~~yvIEv  837 (1050)
T TIGR01369       818 K-GLMNIQFAVKDGEVYVIEV  837 (1050)
T ss_pred             c-ceEEEEEEEECCeEEEEEE
Confidence            4 5    44445677888885

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=99.91  E-value=3.6e-23  Score=176.45  Aligned_cols=164  Identities=21%  Similarity=0.413  Sum_probs=136.8

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      +..|.++++++.++||+.+..       +|.|.+.+.+++++  +|++...++..  .......+++.|++++ ++.+++
T Consensus        26 ~~~d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e~i--~~~~l~~l~~~g~~~~-p~~~~~   93 (352)
T TIGR01161        26 HVLDPDANSPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFEHV--DVEALEKLEARGVKLF-PSPDAL   93 (352)
T ss_pred             EEECCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcCcC--CHHHHHHHHhCCCeEC-CCHHHH
Confidence            456788999999999998843       36788999999887  67765443221  2345677888888754 999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..++++|+++|||+|+++  .+.+.+++.+++++++||+|+||..++ +|+|++++++.+|+.++++.+.    
T Consensus        94 ~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----  167 (352)
T TIGR01161        94 AIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG----  167 (352)
T ss_pred             HHhcCHHHHHHHHHHcCCCCCCcc--EeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----
Confidence            999999999999999999999975  688999999999999999999999986 8999999999999998887642    


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeec
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                          ...+|+|+||+++.|+++.++++
T Consensus       168 ----~~~~lvEe~I~~~~E~sv~~~~~  190 (352)
T TIGR01161       168 ----DRECIVEEFVPFERELSVIVARS  190 (352)
T ss_pred             ----CCcEEEEecCCCCeEEEEEEEEc
Confidence                35799999999779999998764

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.91  E-value=3.9e-24  Score=204.12  Aligned_cols=227  Identities=18%  Similarity=0.290  Sum_probs=169.1

Q ss_pred             CcCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619          2 LFPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE   79 (246)
Q Consensus         2 v~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~   79 (246)
                      |..|.+|+.  ....+||..|..+        .+.+.++++++++++|+|++.+|.... ..++..+++.|++++|++++
T Consensus       592 i~v~~npetvs~~~~~aD~~y~e~--------~~~e~v~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~  662 (1066)
T PRK05294        592 IMVNCNPETVSTDYDTSDRLYFEP--------LTLEDVLEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPD  662 (1066)
T ss_pred             EEEeCCccccccccchhhheeecC--------CCHHHHHHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHH
Confidence            455667765  4466789888654        467999999999999999987654221 26678899999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      ++.++.||..++++|+++|||+|++.  .+.+.+++.++++.++||+||||.++.||+|+.+++|.+|+..+++..... 
T Consensus       663 ai~~~~DK~~~~~~L~~~GIp~P~~~--~~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~-  739 (1066)
T PRK05294        663 AIDLAEDRERFSKLLEKLGIPQPPNG--TATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV-  739 (1066)
T ss_pred             HHHHhCCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh-
Confidence            99999999999999999999999976  688999999999999999999999999999999999999999999886542 


Q ss_pred             HhhcCCCceEEEecccCcc-eEEEEeeecceeecchhhhhh-----------hhcCCCCC-CCCcccceeccccceeeee
Q psy10619        160 AASFGDDRILVEKFIKNPR-HIEIQGTTYKFLIQTEKEFEY-----------AKLLPPKP-KLDETKILHAPMPGLVKSV  226 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~-e~~v~v~~d~~~v~~~~~~~~-----------~~~~~~~~-~~~~~~~l~sp~pg~i~~l  226 (246)
                         .....++||+||+ |. |++|++++++..+.....++.           ....|+.. .......++..+..++..+
T Consensus       740 ---s~~~~vlIEefI~-G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aL  815 (1066)
T PRK05294        740 ---SPDHPVLIDKFLE-GAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALEL  815 (1066)
T ss_pred             ---CCCCcEEEEecCC-CCEEEEEEEEecCCeEEEeeeEEeeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence               1246799999999 66 999999998764322111110           01112211 1111133444455555556


Q ss_pred             eecCC----CeeeCCCeEEEEcc
Q psy10619        227 NCKVG----DQIMEGQELCVVGK  245 (246)
Q Consensus       227 ~~~~G----~~v~~g~~~~v~e~  245 (246)
                      ++. |    |.+-.++.+.|||.
T Consensus       816 g~~-G~~~vqf~~~~~~~yViEi  837 (1066)
T PRK05294        816 NVV-GLMNVQFAVKDDEVYVIEV  837 (1066)
T ss_pred             CCe-eeEEEEEEEECCeEEEEEE
Confidence            664 4    33445667888885

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=99.91  E-value=1.6e-23  Score=199.38  Aligned_cols=229  Identities=21%  Similarity=0.281  Sum_probs=172.3

Q ss_pred             cCCCCCC--ChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-C----CCHHHHHHHHHcCCeEeC
Q psy10619          3 FPDPCVF--QRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-S----ENASFVSRLKEEGVVFIG   75 (246)
Q Consensus         3 ~~d~~~~--~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~----e~~~~~~~~~~~g~~~~g   75 (246)
                      ..+.+++  ..+..+||+.|..|        .+.+.+.++++++++|+|+|++|+. +    ........+++.|++++|
T Consensus        45 ~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G  116 (1050)
T TIGR01369        45 LVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLG  116 (1050)
T ss_pred             EEecchhhccCChhcCCEEEECC--------CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEEC
Confidence            3445554  46677899999875        4678999999999999999987641 1    112335678999999999


Q ss_pred             CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHH
Q psy10619         76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLS  155 (246)
Q Consensus        76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~  155 (246)
                      ++++++.+++||..++++|+++|+|+|++.  .+++.+++.++++++|||+||||+.+.||+|+.+++|.+|+..++...
T Consensus       117 ~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~  194 (1050)
T TIGR01369       117 TPVEAIKKAEDRELFREAMKEIGEPVPESE--IAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERA  194 (1050)
T ss_pred             CCHHHHHHhCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHH
Confidence            999999999999999999999999999975  789999999999999999999999999999999999999999988776


Q ss_pred             HHHHHhhcCCCceEEEecccCcceEEEEeeeccee--ec--chhhhh-----hhh--cCCCCCCCC--cccceeccccce
Q psy10619        156 SQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL--IQ--TEKEFE-----YAK--LLPPKPKLD--ETKILHAPMPGL  222 (246)
Q Consensus       156 ~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~--v~--~~~~~~-----~~~--~~~~~~~~~--~~~~l~sp~pg~  222 (246)
                      ...    .....+|||+|++|.+|+++.+++|..+  +.  ....+.     ...  ...|....+  ....++..+..+
T Consensus       195 ~~~----s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i  270 (1050)
T TIGR01369       195 LSA----SPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKI  270 (1050)
T ss_pred             Hhc----CCCCcEEEEEcccCceEEEEEEEEeCCCCEEEEeeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHH
Confidence            542    1125799999999558999999988543  11  100110     000  011222111  224566677778


Q ss_pred             eeeeeecCCCee----e-CCCeEEEEcc
Q psy10619        223 VKSVNCKVGDQI----M-EGQELCVVGK  245 (246)
Q Consensus       223 i~~l~~~~G~~v----~-~g~~~~v~e~  245 (246)
                      +.++++.-|..|    . .++.+.++|.
T Consensus       271 ~~~Lg~~G~~~Vef~l~~~~g~~~viEi  298 (1050)
T TIGR01369       271 IRELGIEGGCNVQFALNPDSGRYYVIEV  298 (1050)
T ss_pred             HHHcCCcceeEEEEEEECCCCcEEEEEe
Confidence            888888877555    2 3567888885

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=99.91  E-value=4.3e-23  Score=180.22  Aligned_cols=157  Identities=20%  Similarity=0.333  Sum_probs=133.8

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      ++.|.+.++++|+++++|+++++.+.. -...+++.+++.|++++|++.+++.+++||..++++|+++|||+|++.  .+
T Consensus        49 ~~~d~~~l~~~~~~~~id~vi~~~e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~  125 (423)
T TIGR00877        49 SITDIEALVEFAKKKKIDLAVIGPEAP-LVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VF  125 (423)
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECCchH-HHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeE--EE
Confidence            346889999999999999999875321 012467788999999999999999999999999999999999999965  68


Q ss_pred             CCHHHHHHHHHHhCCc-EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        110 RDADHCVEIARDIGYP-VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P-~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      .+.+++.++++.++|| +|+||..++||+|+.+++|.+|+.+++..+...... .....+|||+|++ |.|+++.++.++
T Consensus       126 ~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g-~~~~~~lvEe~i~-G~E~sv~~~~dg  203 (423)
T TIGR00877       126 TDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFG-DAGERVVIEEFLD-GEEVSLLAFVDG  203 (423)
T ss_pred             CCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcC-CCCCeEEEEECcc-CceEEEEEEEcC
Confidence            8999999999999999 999999999999999999999999999887653200 0135799999999 799999999887


Q ss_pred             eee
Q psy10619        189 FLI  191 (246)
Q Consensus       189 ~~v  191 (246)
                      ..+
T Consensus       204 ~~~  206 (423)
T TIGR00877       204 KTV  206 (423)
T ss_pred             CeE
Confidence            653

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.91  E-value=9.6e-24  Score=175.65  Aligned_cols=227  Identities=25%  Similarity=0.330  Sum_probs=173.9

Q ss_pred             CCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCH--HH--HHHHHHcCCeEeCCCH
Q psy10619          4 PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENA--SF--VSRLKEEGVVFIGPTA   78 (246)
Q Consensus         4 ~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~--~~--~~~~~~~g~~~~g~~~   78 (246)
                      +...+......+||..|+.|        .+.+.+..+++++++|+++|++|... .+.  .+  ...|++.|++++|++.
T Consensus        37 snpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~  108 (400)
T COG0458          37 SNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDP  108 (400)
T ss_pred             CCCccccCCchhcceeeeec--------CcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCH
Confidence            33334445558999999987        57899999999999999999987532 222  22  2245677999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619         79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE  158 (246)
Q Consensus        79 ~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~  158 (246)
                      +++..+.||.+++++|+++|+|+| +.  ...+.+++.+....+|||+||||.++.||.|..+++|.+|+.+........
T Consensus       109 eaI~iaeDr~~fke~m~eigi~~P-~~--~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~  185 (400)
T COG0458         109 EAIEIAEDKKLFKEAMREIGIPVP-SR--IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRA  185 (400)
T ss_pred             HHhhhhhhHHHHHHHHHHcCCCCC-cc--ccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhcccc
Confidence            999999999999999999999999 33  678999999999999999999999999999999999999999988876543


Q ss_pred             HHhhcCCCceEEEecccCcceEEEEeeecceeec----chhhhhh-------hhcCCCCCCCCcc--cceeccccceeee
Q psy10619        159 AAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ----TEKEFEY-------AKLLPPKPKLDET--KILHAPMPGLVKS  225 (246)
Q Consensus       159 ~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~----~~~~~~~-------~~~~~~~~~~~~~--~~l~sp~pg~i~~  225 (246)
                      +    +..++|+|+++.|+.|+...+++|.....    ....++.       ...+.|++.....  +.++..+...++.
T Consensus       186 s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~  261 (400)
T COG0458         186 S----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIRE  261 (400)
T ss_pred             C----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence            1    24689999999989999999999887621    1111111       1223355544333  6678788888888


Q ss_pred             eeecCCCeee----CC-CeEEEEcc
Q psy10619        226 VNCKVGDQIM----EG-QELCVVGK  245 (246)
Q Consensus       226 l~~~~G~~v~----~g-~~~~v~e~  245 (246)
                      +++.-|..++    .+ -.+.+||.
T Consensus       262 igi~G~~niQ~av~~~~~~~~viEv  286 (400)
T COG0458         262 IGIEGGCNIQFAVDPGGGELYVIEI  286 (400)
T ss_pred             hcccCCCceeEEEcCCCceEEEEEe
Confidence            8888554432    33 26777774

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.91  E-value=9.5e-24  Score=200.98  Aligned_cols=171  Identities=19%  Similarity=0.320  Sum_probs=146.6

Q ss_pred             cCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          3 FPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         3 ~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ..+.+|++  .....||..|..|        .+.+.++++++++++|+|++.++.. ....++..+++.|++++|+++++
T Consensus       594 ~vn~npetvs~~~~~aD~~y~ep--------~~~e~vl~I~~~e~~dgVI~~~g~~-~~~~la~~le~~Gi~ilG~s~e~  664 (1068)
T PRK12815        594 MINNNPETVSTDYDTADRLYFEP--------LTLEDVLNVAEAENIKGVIVQFGGQ-TAINLAKGLEEAGLTILGTSPDT  664 (1068)
T ss_pred             EEeCCccccccccccCceEEEcc--------CCHHHHHHHHhhcCCCEEEEecCcH-HHHHHHHHHHHCCCeEECCcHHH
Confidence            44556654  4556799988764        4679999999999999999987542 12356778899999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +..+.||..++++|+++|||+|++.  .+.+.+++.++++.+|||+|+||.++.||+|+.+++|.+|++.+++...    
T Consensus       665 i~~~~DK~~f~~ll~~~GIp~P~~~--~~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~----  738 (1068)
T PRK12815        665 IDRLEDRDRFYQLLDELGLPHVPGL--TATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA----  738 (1068)
T ss_pred             HHHHcCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh----
Confidence            9999999999999999999999976  6899999999999999999999999999999999999999999988761    


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecceee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLI  191 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v  191 (246)
                        ....++|||+||+ |.|++++++.|+..+
T Consensus       739 --s~~~~vlIeefI~-G~E~~Vd~i~dg~~v  766 (1068)
T PRK12815        739 --SQLYPILIDQFID-GKEYEVDAISDGEDV  766 (1068)
T ss_pred             --cCCCCEEEEEeec-CceEEEEEEEcCCce
Confidence              1256799999998 889999999987654

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=99.91  E-value=3.2e-23  Score=180.41  Aligned_cols=156  Identities=18%  Similarity=0.163  Sum_probs=123.7

Q ss_pred             CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619         31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR  110 (246)
Q Consensus        31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~  110 (246)
                      ..+.+.++++|+++++|+|+++.+... ...+...|++.|++++|++.+++.+++||..+|++|+++|||+|+++. .+.
T Consensus        51 ~~d~e~l~~~~~~~~id~Vi~~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~-~~~  128 (435)
T PRK06395         51 EKDYDLIEDFALKNNVDIVFVGPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFN-ACF  128 (435)
T ss_pred             CCCHHHHHHHHHHhCCCEEEECCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccc-eeC
Confidence            468899999999999999999874311 124566788899999999999999999999999999999999986542 455


Q ss_pred             CHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCH-HHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        111 DADHCVEIARDIGYPVMIKASAGGGGKGMRIANND-QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       111 ~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +.+++..++..++||+||||.+++||+||.++++. +++++++..+....  . ....+|||||+. |.|++++++.|+.
T Consensus       129 ~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~-G~E~Svd~~~dg~  204 (435)
T PRK06395        129 SEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMT-GEEFSLQAFSDGK  204 (435)
T ss_pred             ChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecC-CceEEEEEEEcCC
Confidence            67788777788899999999999999999999543 23344443332210  1 135799999999 8899999999887


Q ss_pred             eec
Q psy10619        190 LIQ  192 (246)
Q Consensus       190 ~v~  192 (246)
                      .+.
T Consensus       205 ~~~  207 (435)
T PRK06395        205 HLS  207 (435)
T ss_pred             eEE
Confidence            753

>PLN02735 carbamoyl-phosphate synthase

Probab=99.91  E-value=3.8e-23  Score=196.48  Aligned_cols=230  Identities=21%  Similarity=0.283  Sum_probs=170.0

Q ss_pred             CcCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCHH--H--HHHHHHcCCeEe
Q psy10619          2 LFPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENAS--F--VSRLKEEGVVFI   74 (246)
Q Consensus         2 v~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~~--~--~~~~~~~g~~~~   74 (246)
                      |..|.+++.  .+..+||+.|+.|        .+.+.+.++++++++|+|+|++|.. +.+..  +  ...|+..|++++
T Consensus        61 i~vd~np~t~~~~~~~aD~~yi~p--------~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~  132 (1102)
T PLN02735         61 VLINSNPATIMTDPETADRTYIAP--------MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELI  132 (1102)
T ss_pred             EEEeCCcccccCChhhCcEEEeCC--------CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEE
Confidence            345556643  3446799988765        4678899999999999999987532 22221  1  356889999999


Q ss_pred             CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC-CcEEEEeccCCCCceeEEeCCHHHHHHHHH
Q psy10619         75 GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAGGGGKGMRIANNDQEAIEGFK  153 (246)
Q Consensus        75 g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~g~g~~gv~~v~~~~el~~~~~  153 (246)
                      |++++++.+++||..++++|+++|+|+|++.  .+.+.+++.++++++| ||+||||+++.||+|+.+++|.+|+..++.
T Consensus       133 G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~  210 (1102)
T PLN02735        133 GAKLDAIKKAEDRELFKQAMEKIGLKTPPSG--IATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICK  210 (1102)
T ss_pred             CCCHHHHHHhcCHHHHHHHHHHCCCCCCCee--EeCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHH
Confidence            9999999999999999999999999999975  6888999988899998 999999999999999999999999999998


Q ss_pred             HHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee-e---cchhhhh---hh--h--cCCCCCCCC--cccceecccc
Q psy10619        154 LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL-I---QTEKEFE---YA--K--LLPPKPKLD--ETKILHAPMP  220 (246)
Q Consensus       154 ~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~-v---~~~~~~~---~~--~--~~~~~~~~~--~~~~l~sp~p  220 (246)
                      .....    ...+.+|||+|+.|.+|+++++++|..+ +   ......+   ++  .  .+.|.+..+  ....++..+-
T Consensus       211 ~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~  286 (1102)
T PLN02735        211 AGLAA----SITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSV  286 (1102)
T ss_pred             HHHhc----CCCCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            76532    1257899999999558999999987432 1   1110011   00  0  011222222  2256777777


Q ss_pred             ceeeeeeecCCC-e----ee-CCCeEEEEcc
Q psy10619        221 GLVKSVNCKVGD-Q----IM-EGQELCVVGK  245 (246)
Q Consensus       221 g~i~~l~~~~G~-~----v~-~g~~~~v~e~  245 (246)
                      .++..++++.|- .    +. ++..+.+||.
T Consensus       287 ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEV  317 (1102)
T PLN02735        287 AIIREIGVECGGSNVQFAVNPVDGEVMIIEM  317 (1102)
T ss_pred             HHHHHhCCCcCceEEEEEEECCCCcEEEEEe
Confidence            888888886553 2    33 3567888885

>PRK05784 phosphoribosylamine--glycine ligase; Provisional

Probab=99.91  E-value=1.5e-22  Score=177.57  Aligned_cols=154  Identities=19%  Similarity=0.250  Sum_probs=125.1

Q ss_pred             CCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcc
Q psy10619         31 YINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNG  107 (246)
Q Consensus        31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~  107 (246)
                      ..|.+.++++|+++++|+|+++.    |.+   .+++.|++.|++++|++.+++.+++||..+|++|+++|||+|+.+ .
T Consensus        55 ~~d~~~l~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~  129 (486)
T PRK05784         55 INSPEEVKKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-K  129 (486)
T ss_pred             CCCHHHHHHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-e
Confidence            46789999999999999999885    444   567889999999999999999999999999999999999997432 2


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHH-----HHHHH----HHHHHHHHhhcC--CCceEEEecccC
Q psy10619        108 IIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQE-----AIEGF----KLSSQEAAASFG--DDRILVEKFIKN  176 (246)
Q Consensus       108 ~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~e-----l~~~~----~~~~~~~~~~~~--~~~~lve~~i~~  176 (246)
                      .+++.+++.++++.. +|+||||..++||+||.++++.++     +.+++    +.++... ..++  +..+|||||+. 
T Consensus       130 ~~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~-~~~g~~~~~VlIEEfL~-  206 (486)
T PRK05784        130 VFYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS-AYYKDVEPKILVEEKVD-  206 (486)
T ss_pred             EeCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH-hhccCCCCeEEEEEccC-
Confidence            678899998888655 699999999999999999999873     44444    3332210 1122  35799999999 


Q ss_pred             cceEEEEeeecceeec
Q psy10619        177 PRHIEIQGTTYKFLIQ  192 (246)
Q Consensus       177 g~e~~v~v~~d~~~v~  192 (246)
                      |.|++|.++.|+..+.
T Consensus       207 G~E~SV~al~dG~~~~  222 (486)
T PRK05784        207 GVEYTLQVLTDGETVI  222 (486)
T ss_pred             CeEEEEEEEECCCeEE
Confidence            8999999999876543

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=99.90  E-value=1.6e-22  Score=168.88  Aligned_cols=180  Identities=19%  Similarity=0.287  Sum_probs=151.2

Q ss_pred             CCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI  108 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~  108 (246)
                      .+.+.|.+++++.++|.++++.    |.+   .+.+.|++.|+++|||+.+++++-.+|..+|++|+++|||++.+  ..
T Consensus        50 ~~~~~lv~fA~~~~idl~vVGP----E~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~  123 (428)
T COG0151          50 TDHEALVAFAKEKNVDLVVVGP----EAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EV  123 (428)
T ss_pred             cCHHHHHHHHHHcCCCEEEECC----cHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cc
Confidence            4689999999999999999997    443   56889999999999999999999999999999999999999885  47


Q ss_pred             cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC--CceEEEecccCcceEEEEeee
Q psy10619        109 IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       109 ~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~--~~~lve~~i~~g~e~~v~v~~  186 (246)
                      +++.+++.+++++.+.|+||||..-.+|+||.++.+.++..++++.++...  .|++  ..++||+|+. |.|+|+.++.
T Consensus       124 f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~--~fg~~g~~VVIEEfL~-GeE~S~~a~~  200 (428)
T COG0151         124 FTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGN--AFGSAGARVVIEEFLD-GEEFSLQAFV  200 (428)
T ss_pred             cCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhc--cccCCCCcEEEEeccc-ceEEEEEEEE
Confidence            889999999999999999999999999999999999999999999887642  2322  4599999999 9999999999


Q ss_pred             cceeec-chhhhhhhhcCCCCCCCCccc-ceecccc
Q psy10619        187 YKFLIQ-TEKEFEYAKLLPPKPKLDETK-ILHAPMP  220 (246)
Q Consensus       187 d~~~v~-~~~~~~~~~~~~~~~~~~~~~-~l~sp~p  220 (246)
                      |+..+. ++...++.+....+..+.+.+ .-.||.|
T Consensus       201 DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P  236 (428)
T COG0151         201 DGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAP  236 (428)
T ss_pred             cCCeEEECccccccccccCCCCCCCCCCCCCCCCCC
Confidence            998864 555566655555555555443 2445554

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=99.90  E-value=1.1e-22  Score=174.39  Aligned_cols=165  Identities=20%  Similarity=0.337  Sum_probs=136.0

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      +..|.++++++..+||+.+..       +|.|.+.+.++++.  +|+|...++.  ......+.+++. . .++++++++
T Consensus        29 ~~~d~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a~~--~dvit~e~e~--i~~~~l~~l~~~-~-~~~p~~~~~   95 (372)
T PRK06019         29 IVLDPDPDSPAAQVADEVIVA-------DYDDVAALRELAEQ--CDVITYEFEN--VPAEALDALAAR-V-PVPPGPDAL   95 (372)
T ss_pred             EEEeCCCCCchhHhCceEEec-------CCCCHHHHHHHHhc--CCEEEeCcCC--CCHHHHHHHhcC-C-eeCcCHHHH
Confidence            345788899999999998875       36788999999884  8887644322  223444556555 3 356999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..+|++|+++|||+|++.  .+.+.+++.++.+++|||+|+||+.++ +|+|++++++.+|+..++..+     
T Consensus        96 ~~~~dK~~~k~~l~~~Gip~p~~~--~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~-----  168 (372)
T PRK06019         96 AIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL-----  168 (372)
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc-----
Confidence            999999999999999999999975  689999999989999999999999864 899999999999999998764     


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                         +...++||+||++++|+++.+.++..
T Consensus       169 ---~~~~~ivEe~I~~~~E~sv~~~~~~~  194 (372)
T PRK06019        169 ---GSVPCILEEFVPFEREVSVIVARGRD  194 (372)
T ss_pred             ---CCCCEEEEecCCCCeEEEEEEEECCC
Confidence               24689999999988999999887643

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=99.90  E-value=6.2e-23  Score=170.81  Aligned_cols=139  Identities=16%  Similarity=0.205  Sum_probs=118.0

Q ss_pred             HHHHHHHhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHH
Q psy10619         37 IIDAIRQTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC  115 (246)
Q Consensus        37 l~~~~~~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~  115 (246)
                      ++..+.+.++|++++.. |...|+..++..|+..|+|++|+++.++.+|+||..+|++|+++|||+|++.  .+.+..  
T Consensus        48 ~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~~--  123 (296)
T PRK14569         48 LVAKLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDKL--  123 (296)
T ss_pred             HHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchhh--
Confidence            34445566899998875 5677888999999999999999999999999999999999999999999964  343321  


Q ss_pred             HHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        116 VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       116 ~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                       .....++||+||||.++++|.|+.+++|.+|+..+++.+..       .+.+|||+||+ |+|++|.+++++
T Consensus       124 -~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~-G~E~tv~vl~~~  187 (296)
T PRK14569        124 -VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVT-GKEITVAIVNDE  187 (296)
T ss_pred             -hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccc-cEEEEEEEECCc
Confidence             23467899999999999999999999999999999887532       25799999999 899999999765

>KOG0368|consensus

Probab=99.90  E-value=2.3e-23  Score=191.87  Aligned_cols=182  Identities=36%  Similarity=0.592  Sum_probs=168.5

Q ss_pred             CCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHh
Q psy10619          5 DPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGM   84 (246)
Q Consensus         5 d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~   84 (246)
                      |...|+.+++|||.++.+|++++...|.+.+.+++++.+.+.|+|++++|..+||+.+.+.|.+.|+.++||+..++..+
T Consensus        97 dl~anaeyIrmADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sL  176 (2196)
T KOG0368|consen   97 DLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRAL  176 (2196)
T ss_pred             HHHhhHHHhhhhhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHh
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHhCCCCCCCC------------------------ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619         85 GDKLESKKLAKEAGVNIIPGF------------------------NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR  140 (246)
Q Consensus        85 ~dK~~~~~~l~~~gip~p~~~------------------------~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~  140 (246)
                      .||....-..+.+|+|+.+|.                        .+++.+.+|..++++.+|||+++|...|+||+|++
T Consensus       177 GDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIR  256 (2196)
T KOG0368|consen  177 GDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIR  256 (2196)
T ss_pred             cchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCccee
Confidence            999999999999999998871                        12367788999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .|++.+++...|++...+    .+..++++.+...+.+++.|+++.|.++
T Consensus       257 kv~n~ddF~~lf~qv~~E----vPGSPIFlMK~a~~ARHlEVQlLaDqYG  302 (2196)
T KOG0368|consen  257 KVENEDDFKALFKQVQNE----VPGSPIFLMKLADQARHLEVQLLADQYG  302 (2196)
T ss_pred             eccchHHHHHHHHHHHhh----CCCCceeeeecccCcceeeeehhhhhcC
Confidence            999999999999998765    4578899999999899999999999887

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional

Probab=99.90  E-value=7.8e-23  Score=173.57  Aligned_cols=136  Identities=21%  Similarity=0.285  Sum_probs=118.6

Q ss_pred             HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619         43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD  121 (246)
Q Consensus        43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~  121 (246)
                      ..++|++++. +|..+|++.++.+|+..|+|++|++..++.+|+||..++++|+++|||+|+++  .+.+.++..  ...
T Consensus        88 ~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~--~~~  163 (343)
T PRK14568         88 TIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--TVTADERPD--AAT  163 (343)
T ss_pred             cccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEECCchhh--hhh
Confidence            3579999988 67788999999999999999999999999999999999999999999999975  455444332  356


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ++||+||||+++++|.|+.+++|.+|+.++++.+..     + +..+|||+||+ |+|+++.+++++.
T Consensus       164 l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~-----~-~~~vlVEe~I~-G~E~sv~vl~~~~  224 (343)
T PRK14568        164 LTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ-----Y-DSKVLIEEAVV-GSEVGCAVLGNGA  224 (343)
T ss_pred             cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEECCcC-CEEEEEEEEcCCC
Confidence            899999999999999999999999999999987653     2 46799999999 8999999998754

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=99.89  E-value=2.8e-22  Score=179.48  Aligned_cols=168  Identities=17%  Similarity=0.236  Sum_probs=140.2

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      +..|.++++++..+||+.+..       +|.|.+.+.+++++  +|++....+.  -+....+.+++.|+++ +++++++
T Consensus        49 i~ld~~~~apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvIt~e~e~--v~~~~l~~le~~gi~v-~ps~~al  116 (577)
T PLN02948         49 KVLDPLEDCPASSVAARHVVG-------SFDDRAAVREFAKR--CDVLTVEIEH--VDVDTLEALEKQGVDV-QPKSSTI  116 (577)
T ss_pred             EEEeCCCCCchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEEEEecCC--CCHHHHHHHHhcCCcc-CCCHHHH
Confidence            455788899999999998864       35788999999988  7877654322  2234557889999875 5999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..+|++|+++|||+|+++  .+.+.+++.++.+++|||+|+||+.++ +|+|++++++.+|+..+++.+..   
T Consensus       117 ~i~~DK~~~K~~l~~~GIptp~~~--~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~---  191 (577)
T PLN02948        117 RIIQDKYAQKVHFSKHGIPLPEFM--EIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGG---  191 (577)
T ss_pred             HHhcCHHHHHHHHHHCCcCCCCeE--EeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhC---
Confidence            999999999999999999999975  678899998888999999999999877 79999999999999999887542   


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                        + +..+|||+||++.+|++|.+.++..
T Consensus       192 --~-~~~vlvEefI~~~~EisV~v~r~~~  217 (577)
T PLN02948        192 --F-ERGLYAEKWAPFVKELAVMVARSRD  217 (577)
T ss_pred             --C-CCcEEEEecCCCCeEEEEEEEECCC
Confidence              2 4679999999966999999997543

>PRK14572 D-alanyl-alanine synthetase A; Provisional

Probab=99.89  E-value=1.3e-22  Score=172.49  Aligned_cols=135  Identities=16%  Similarity=0.250  Sum_probs=117.1

Q ss_pred             hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC------CHHHHH
Q psy10619         44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR------DADHCV  116 (246)
Q Consensus        44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------~~~~~~  116 (246)
                      .++|++++. +|..+|++.++..|+.+|+|++|++..++.+++||..++++|+++|||+|+++  .+.      +.+++.
T Consensus        87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~~~~~~  164 (347)
T PRK14572         87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNSPRKTL  164 (347)
T ss_pred             cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccChHHHH
Confidence            468888877 57788999999999999999999999999999999999999999999999975  332      334444


Q ss_pred             HHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619        117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       117 ~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      ...++++||+||||+++++|.|+.+++|.+|+..+++.++.     + ++.+|||+||+ |+|++|.++++
T Consensus       165 ~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~-----~-~~~vlVEefI~-G~E~sv~vi~~  228 (347)
T PRK14572        165 LKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE-----S-DSKVMSQSFLS-GTEVSCGVLER  228 (347)
T ss_pred             HHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCCEEEEcCcc-cEEEEEEEEeC
Confidence            45667899999999999999999999999999999988753     1 46799999999 89999999974

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.89  E-value=2.3e-22  Score=192.09  Aligned_cols=229  Identities=21%  Similarity=0.261  Sum_probs=168.1

Q ss_pred             cCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCH--HH--HHHHHHcCCeEeC
Q psy10619          3 FPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENA--SF--VSRLKEEGVVFIG   75 (246)
Q Consensus         3 ~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~--~~--~~~~~~~g~~~~g   75 (246)
                      ..|.++..  ....+||+.|..|        .+.+.+.++++++++|+|+|+.+.. ..+.  .+  ...|++.|++++|
T Consensus        46 ~v~~~p~~~~~~~~~aD~~y~~p--------~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g  117 (1066)
T PRK05294         46 LVNSNPATIMTDPEMADATYIEP--------ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIG  117 (1066)
T ss_pred             EEcCCcccccCCcccCCEEEECC--------CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEEC
Confidence            44555543  4556899988865        4679999999999999999987542 1111  11  3468899999999


Q ss_pred             CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHH
Q psy10619         76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLS  155 (246)
Q Consensus        76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~  155 (246)
                      ++++++..++||..++++|+++|+|+|++.  .+++.+++.++++++|||+||||+.|.||+|+.++++.+|+.++++..
T Consensus       118 ~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~  195 (1066)
T PRK05294        118 AKLEAIDKAEDRELFKEAMKKIGLPVPRSG--IAHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERG  195 (1066)
T ss_pred             CCHHHHHHhcCHHHHHHHHHHCCcCCCCee--eeCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHH
Confidence            999999999999999999999999999975  789999999999999999999999999999999999999999998865


Q ss_pred             HHHHHhhcCCCceEEEecccCcceEEEEeeeccee-ec-ch--hhhhh-----hh--cCCCCCCCC--cccceeccccce
Q psy10619        156 SQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL-IQ-TE--KEFEY-----AK--LLPPKPKLD--ETKILHAPMPGL  222 (246)
Q Consensus       156 ~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~-v~-~~--~~~~~-----~~--~~~~~~~~~--~~~~l~sp~pg~  222 (246)
                      ...    .....+|||+||+|.+|+++.+++|..+ +. ..  ...+.     ..  ...|....+  ....++..+-.+
T Consensus       196 ~~~----s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki  271 (1066)
T PRK05294        196 LDL----SPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAI  271 (1066)
T ss_pred             Hhh----CCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            432    1135799999999557999999988654 11 10  00100     00  011221111  223466666677


Q ss_pred             eeeeeecCCCe-----ee-CCCeEEEEcc
Q psy10619        223 VKSVNCKVGDQ-----IM-EGQELCVVGK  245 (246)
Q Consensus       223 i~~l~~~~G~~-----v~-~g~~~~v~e~  245 (246)
                      +.++++..|-.     +. .+..+.++|.
T Consensus       272 ~~aLg~~~G~~~vef~~~~~~g~~~viEi  300 (1066)
T PRK05294        272 IREIGVETGGCNVQFALNPKDGRYIVIEM  300 (1066)
T ss_pred             HHHcCCccCceEEEEEEECCCCcEEEEEe
Confidence            77788875532     23 4567888885

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.89  E-value=4e-22  Score=189.95  Aligned_cols=229  Identities=20%  Similarity=0.265  Sum_probs=166.3

Q ss_pred             CcCCCCCCChhh--hccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCHH--H--HHHHHHcCCeEe
Q psy10619          2 LFPDPCVFQRHV--KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENAS--F--VSRLKEEGVVFI   74 (246)
Q Consensus         2 v~~d~~~~~~~~--~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~~--~--~~~~~~~g~~~~   74 (246)
                      |..+.++.....  .+||..|..|        .+.+.+.++++++++|+|+|+.|+.. .+..  +  ...|++.|++++
T Consensus        45 i~v~~np~~~~~d~~~ad~~y~ep--------~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~  116 (1068)
T PRK12815         45 VLVNPNPATIMTDPAPADTVYFEP--------LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELL  116 (1068)
T ss_pred             EEEeCCcchhhcCcccCCeeEECC--------CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEE
Confidence            344555543322  4688887654        46799999999999999999875421 1111  1  236788999999


Q ss_pred             CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHH
Q psy10619         75 GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKL  154 (246)
Q Consensus        75 g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~  154 (246)
                      |++.+++..++||..++++|+++|||+|+++  .+.+.+++.++++.+|||+||||+.+.||+|+.+++|.+|+.++++.
T Consensus       117 g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~  194 (1068)
T PRK12815        117 GTNIEAIQKGEDRERFRALMKELGEPVPESE--IVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQ  194 (1068)
T ss_pred             CCCHHHHHHhcCHHHHHHHHHHcCcCCCCce--eeCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHH
Confidence            9999999999999999999999999999975  78999999999999999999999999999999999999999999977


Q ss_pred             HHHHHHhhcCCCceEEEecccCcceEEEEeeeccee-ec---chhhhhhhhc-------CCCCCCCC--cccceeccccc
Q psy10619        155 SSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL-IQ---TEKEFEYAKL-------LPPKPKLD--ETKILHAPMPG  221 (246)
Q Consensus       155 ~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~-v~---~~~~~~~~~~-------~~~~~~~~--~~~~l~sp~pg  221 (246)
                      ....    ....++|||+|++|.+|+++.+++|..+ +.   .....+....       +.|....+  ....++..+..
T Consensus       195 ~~~~----s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~k  270 (1068)
T PRK12815        195 GLQA----SPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLK  270 (1068)
T ss_pred             HHhc----CCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence            6542    1135799999999557999999988643 11   1000110000       11221111  12446666777


Q ss_pred             eeeeeeecCC-Ce----ee-CCCeEEEEcc
Q psy10619        222 LVKSVNCKVG-DQ----IM-EGQELCVVGK  245 (246)
Q Consensus       222 ~i~~l~~~~G-~~----v~-~g~~~~v~e~  245 (246)
                      ++..+++ .| ..    +. .|+.+.++|.
T Consensus       271 i~~~Lg~-~G~~~vef~l~~~~g~~~ViEI  299 (1068)
T PRK12815        271 IISALGV-VGGCNIQFALDPKSKQYYLIEV  299 (1068)
T ss_pred             HHHHcCC-CCceEEEEEEECCCCcEEEEEE
Confidence            7778888 45 22    22 3567899985

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed

Probab=99.89  E-value=1.8e-22  Score=170.73  Aligned_cols=134  Identities=27%  Similarity=0.399  Sum_probs=118.2

Q ss_pred             CCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH----HHHHH
Q psy10619         45 RADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH----CVEIA  119 (246)
Q Consensus        45 ~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~----~~~~~  119 (246)
                      ++|++++. +|..+|+..++..|+..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.++    +....
T Consensus        81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~~  158 (333)
T PRK01966         81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEASLAEIE  158 (333)
T ss_pred             cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhhHHHHH
Confidence            69999988 57788999999999999999999999999999999999999999999999975  4444333    34456


Q ss_pred             HHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619        120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       120 ~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      +.++||+||||.++++|.|+.++++.+|+.++++.++.     + ++.+|||+||+ |+|++|.++++
T Consensus       159 ~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlvEefI~-G~E~~v~vl~~  219 (333)
T PRK01966        159 AKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFE-----Y-DRKVLVEQGIK-GREIECAVLGN  219 (333)
T ss_pred             HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEcCcC-CEEEEEEEECC
Confidence            78899999999999999999999999999999988653     2 46899999999 89999999986

>PRK14570 D-alanyl-alanine synthetase A; Provisional

Probab=99.89  E-value=3.6e-22  Score=169.99  Aligned_cols=137  Identities=23%  Similarity=0.291  Sum_probs=118.1

Q ss_pred             hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC------CHHHHH
Q psy10619         44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR------DADHCV  116 (246)
Q Consensus        44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------~~~~~~  116 (246)
                      .++|++++. +|..+|++.++.+|+.+|+|++|++..++.+++||..++++|+++|||+|+++  .+.      +.+++.
T Consensus        86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~--~~~~~~~~~~~~~~~  163 (364)
T PRK14570         86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFI--GFRKYDYFLDKEGIK  163 (364)
T ss_pred             cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEE--EEeccccccchHHHH
Confidence            469999988 46778999999999999999999999999999999999999999999999964  222      344554


Q ss_pred             HH-HHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        117 EI-ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       117 ~~-~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +. ...++||+||||.++++|.|+.++++.+|+..+++.++.     + ++.+|||+||. |+|++|.+++++.
T Consensus       164 ~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~-----~-~~~vlVEefI~-GrEi~v~Vlg~~~  230 (364)
T PRK14570        164 KDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFK-----Y-DLTVVIEKFIE-AREIECSVIGNEQ  230 (364)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHh-----C-CCCEEEECCcC-CEEEEEEEECCCC
Confidence            33 356899999999999999999999999999999988763     2 46799999999 9999999998753

>PRK07206 hypothetical protein; Provisional

Probab=99.89  E-value=2.4e-22  Score=175.17  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=145.4

Q ss_pred             CCHHHHHHHHHHhCCCEEccccccCCCCHHHHH-HHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVS-RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR  110 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~-~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~  110 (246)
                      .+.+.++++++++++|+|+++.+.   ...+++ +.+..|++ ++++++++..++||..|+++|+++|||+|+++  .+.
T Consensus        57 ~~~~~l~~~~~~~~~d~vi~~~e~---~~~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~--~~~  130 (416)
T PRK07206         57 GDIDDLVEFLRKLGPEAIIAGAES---GVELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQI--NTA  130 (416)
T ss_pred             CCHHHHHHHHHHcCCCEEEECCCc---cHHHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEE--ecC
Confidence            567899999999999999998522   123333 34456665 36889999999999999999999999999965  688


Q ss_pred             CHHHHHHHHHHhCC---cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh-hcCCCceEEEecccCcceEEEEeee
Q psy10619        111 DADHCVEIARDIGY---PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA-SFGDDRILVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       111 ~~~~~~~~~~~~~~---P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lve~~i~~g~e~~v~v~~  186 (246)
                      +.+++.++++.++|   |+||||..|+||+|+.+++|.+|++.+++++...... ......++||+||+ |.|++++++.
T Consensus       131 ~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~-G~E~sv~~~~  209 (416)
T PRK07206        131 DWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI-GTEYVVNFVS  209 (416)
T ss_pred             CHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc-cEEEEEEEEE
Confidence            99999999999888   9999999999999999999999999999887542110 01135799999999 8999999886


Q ss_pred             cceeecchhhhhhh-hcCCC----------CC-CCCcccceeccccceeeeeeecCCC----eeeCCCeEEEEcc
Q psy10619        187 YKFLIQTEKEFEYA-KLLPP----------KP-KLDETKILHAPMPGLVKSVNCKVGD----QIMEGQELCVVGK  245 (246)
Q Consensus       187 d~~~v~~~~~~~~~-~~~~~----------~~-~~~~~~~l~sp~pg~i~~l~~~~G~----~v~~g~~~~v~e~  245 (246)
                      .+..+.......+. .....          .+ ..+....+...+..++.+++++.|-    ..-..+...+||.
T Consensus       210 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEi  284 (416)
T PRK07206        210 LDGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEI  284 (416)
T ss_pred             ECCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEE
Confidence            43332110000000 00000          00 0111234556666777788877662    2333344577886

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=99.88  E-value=3.9e-22  Score=166.93  Aligned_cols=145  Identities=22%  Similarity=0.351  Sum_probs=125.6

Q ss_pred             HHHHHHHHhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH
Q psy10619         36 KIIDAIRQTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH  114 (246)
Q Consensus        36 ~l~~~~~~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~  114 (246)
                      .+++.++.+++|+|++.+ |..+++..+...++..|++++|++..++.++.||..++++|+++|||+|+++  .+.+.++
T Consensus        47 ~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~  124 (304)
T PRK01372         47 DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWI--VLTREED  124 (304)
T ss_pred             chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcch
Confidence            355566677899998875 3456777788999999999999999999999999999999999999999976  6788888


Q ss_pred             HHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        115 CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       115 ~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +..++..++||+|+||..+++|+|+.++++.+++.++++....     + ...+|||+||+ |+|+++.++++..
T Consensus       125 ~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~E~~v~vi~~~~  192 (304)
T PRK01372        125 LLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIK-GRELTVAVLGGKA  192 (304)
T ss_pred             HHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccC-CEEEEEEEECCCc
Confidence            8888889999999999999999999999999999988877642     2 46799999999 8999999987753

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=99.88  E-value=2.1e-21  Score=155.25  Aligned_cols=172  Identities=18%  Similarity=0.314  Sum_probs=148.0

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +|..|.=.++|+++.|+..+.+.+       +|.++|..+++++++|+|+|-.+...  ......+++.|..++ |...+
T Consensus        38 ViAVDrY~~APAmqVAhrs~Vi~M-------lD~~al~avv~rekPd~IVpEiEAI~--td~L~elE~~G~~VV-P~ArA  107 (394)
T COG0027          38 VIAVDRYANAPAMQVAHRSYVIDM-------LDGDALRAVVEREKPDYIVPEIEAIA--TDALVELEEEGYTVV-PNARA  107 (394)
T ss_pred             EEEecCcCCChhhhhhhheeeeec-------cCHHHHHHHHHhhCCCeeeehhhhhh--HHHHHHHHhCCceEc-cchHH
Confidence            367788899999999999998754       89999999999999999999875432  233456889999987 99999


Q ss_pred             HHHhcCHHHHHHHHH-HhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAK-EAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~-~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      ..+++|+...|++.. ++|+|+.++.  ...+.+++.++++++||||++||..+++|+|-+++++.++++.+|+......
T Consensus       108 t~ltMnRegiRrlAAeeLglpTs~Y~--fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~  185 (394)
T COG0027         108 TKLTMNREGIRRLAAEELGLPTSKYR--FADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGG  185 (394)
T ss_pred             HHhhhcHHHHHHHHHHHhCCCCcccc--ccccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcC
Confidence            999999999999865 6999999965  6899999999999999999999999999999999999999999999987543


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~  186 (246)
                      +  .+...++||+|+++..|+++-.++
T Consensus       186 R--~~~~RVIVE~fv~fd~EiTlLtvr  210 (394)
T COG0027         186 R--GGSGRVIVEEFVKFDFEITLLTVR  210 (394)
T ss_pred             C--CCCCcEEEEEEecceEEEEEEEEE
Confidence            2  335789999999977777766654

>PRK02186 argininosuccinate lyase; Provisional

Probab=99.88  E-value=7.5e-22  Score=185.65  Aligned_cols=212  Identities=13%  Similarity=0.196  Sum_probs=154.3

Q ss_pred             ccceeEEcCCCCcCCCCCCHHHHHHHHHHh-CCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHH
Q psy10619         15 LADEAVCIGPPVAAQSYINVDKIIDAIRQT-RADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL   93 (246)
Q Consensus        15 ~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~   93 (246)
                      .+|..+..       ++.|.+.+++.+++. .+++|+++.+..  ....+.+.+..|++  |++++++.+++||..++++
T Consensus        46 ~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~V~~~se~~--v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~  114 (887)
T PRK02186         46 IRVVTISA-------DTSDPDRIHRFVSSLDGVAGIMSSSEYF--IEVASEVARRLGLP--AANTEAIRTCRDKKRLART  114 (887)
T ss_pred             cceeEEEc-------CCCCHHHHHHHHHhcCCCCEEEeCchhh--HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHH
Confidence            35655544       346789999999986 678888775221  12345566778876  6899999999999999999


Q ss_pred             HHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEec
Q psy10619         94 AKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKF  173 (246)
Q Consensus        94 l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~  173 (246)
                      |+++|||+|+++  .+.+.+++.++.+.++||+||||.+++||+||++|+|.+|+.++++.+..     .....++||+|
T Consensus       115 L~~~GIp~P~~~--~v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~-----~~~~~~lvEEf  187 (887)
T PRK02186        115 LRDHGIDVPRTH--ALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR-----AGTRAALVQAY  187 (887)
T ss_pred             HHHcCCCCCCEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh-----cCCCcEEEeec
Confidence            999999999965  68889999988899999999999999999999999999999999887653     12568999999


Q ss_pred             ccCcceEEEEeeecceeecchhhhh-----------hhhcCCCCCCCCcccceeccccceeeeeeecCC----CeeeCCC
Q psy10619        174 IKNPRHIEIQGTTYKFLIQTEKEFE-----------YAKLLPPKPKLDETKILHAPMPGLVKSVNCKVG----DQIMEGQ  238 (246)
Q Consensus       174 i~~g~e~~v~v~~d~~~v~~~~~~~-----------~~~~~~~~~~~~~~~~l~sp~pg~i~~l~~~~G----~~v~~g~  238 (246)
                      |+ |.||+|+++.++.++......+           ..+..|.....+....+...+...+..++++.|    +..-.++
T Consensus       188 I~-G~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~  266 (887)
T PRK02186        188 VE-GDEYSVETLTVARGHQVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGD  266 (887)
T ss_pred             cc-CCcEEEEEEEECCcEEEEEEEeeecCCCCCeEEeccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECC
Confidence            99 8999999987654321110000           001112111112224466667777788888777    3333345


Q ss_pred             eEEEEcc
Q psy10619        239 ELCVVGK  245 (246)
Q Consensus       239 ~~~v~e~  245 (246)
                      .+.+||.
T Consensus       267 g~~liEI  273 (887)
T PRK02186        267 TVVIIEI  273 (887)
T ss_pred             CEEEEEE
Confidence            6888886

>PRK06524 biotin carboxylase-like protein; Validated

Probab=99.87  E-value=9.1e-21  Score=163.82  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH
Q psy10619         35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH  114 (246)
Q Consensus        35 ~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~  114 (246)
                      ..+++.+++++...-.   -++++++.++.+|+..|+++++++..++.+|+||..++++++++|||+|+++.....+.++
T Consensus        94 ~~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee  170 (493)
T PRK06524         94 PETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE  170 (493)
T ss_pred             HHHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence            4455666666543222   1346899999999999999999999999999999999999999999999986322466777


Q ss_pred             HHHHHHH--hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        115 CVEIARD--IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       115 ~~~~~~~--~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      +.+.++.  +|||+||||+.|++|+|++++++.+|++.++..+..       ...++||+||. |+|++|+++.+..+
T Consensus       171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~-------~~~viVEe~I~-GrEitVev~vd~dG  240 (493)
T PRK06524        171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG-------QPEIKVMKRIR-NVEVCIEACVTRHG  240 (493)
T ss_pred             HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC-------CCCEEEEeccC-cEEEEEEEEEeCCC
Confidence            7666665  999999999999999999999999999998776532       36789999999 89999988876543

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase

Probab=99.86  E-value=3.7e-21  Score=161.85  Aligned_cols=137  Identities=23%  Similarity=0.360  Sum_probs=115.8

Q ss_pred             hCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC-CHHH---H--H
Q psy10619         44 TRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR-DADH---C--V  116 (246)
Q Consensus        44 ~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~-~~~~---~--~  116 (246)
                      .++|+|++.. |..+++..+...++..|+|++|+++.++.++.||..++++|+++|||+|++.  .++ +.++   +  .
T Consensus        62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~  139 (315)
T TIGR01205        62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECE  139 (315)
T ss_pred             CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHH
Confidence            6799999875 3456777889999999999999999999999999999999999999999975  344 3332   2  2


Q ss_pred             HHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       117 ~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .+...++||+|+||..+++|.|+.+++|.+++.++++.+..     + ...++||+||+ |+|+++.+++++.
T Consensus       140 ~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~e~~v~vi~~~~  205 (315)
T TIGR01205       140 QVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-----Y-DEEVLVEQFIK-GRELEVSILGNEE  205 (315)
T ss_pred             HHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEcCCC-CEEEEEEEECCCC
Confidence            33467899999999999999999999999999999887653     2 46799999999 9999999998654

but a number of antibiotic resistance proteins score above the trusted cutoff of this model.

>PRK14571 D-alanyl-alanine synthetase A; Provisional

Probab=99.86  E-value=1.1e-20  Score=157.73  Aligned_cols=132  Identities=21%  Similarity=0.262  Sum_probs=111.8

Q ss_pred             hCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619         44 TRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI  122 (246)
Q Consensus        44 ~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~  122 (246)
                      .++|++++.. |..+++..+...++..|+|++|+++.++.+++||..++++|+ +|||+|++.  .+.+..    ....+
T Consensus        52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l  124 (299)
T PRK14571         52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPL  124 (299)
T ss_pred             cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhc
Confidence            4689988774 455678889999999999999999999999999999999998 589999965  444322    23568


Q ss_pred             CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       123 ~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +||+|+||.++++|.|+.+++|.+|+.++++..+..      ...+|||+||+ |+|+++.+++++.
T Consensus       125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~-G~E~sv~vl~~~~  184 (299)
T PRK14571        125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIP-GREMTVSILETEK  184 (299)
T ss_pred             CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEcccc-ceEEEEEEEcCCC
Confidence            999999999999999999999999999988765431      35799999999 8999999998764

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=99.85  E-value=1.4e-20  Score=175.89  Aligned_cols=139  Identities=21%  Similarity=0.282  Sum_probs=120.5

Q ss_pred             hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCC------HH-HH
Q psy10619         44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRD------AD-HC  115 (246)
Q Consensus        44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~------~~-~~  115 (246)
                      .++|++++. +|..+|++.++.+|+..|+|++|++..++.+++||..+|++|+++|||+|++.  .+..      .+ .+
T Consensus       525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~~~  602 (809)
T PRK14573        525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPELCL  602 (809)
T ss_pred             ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHHHH
Confidence            469999988 47788999999999999999999999999999999999999999999999975  3332      22 23


Q ss_pred             HHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        116 VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       116 ~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .++.+.++||+||||.++++|.|+.++++.+|+..+++.++.     + +..+|||+|+.+|+|++|.+++++.+
T Consensus       603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~-----~-~~~vlVEe~i~~grEi~v~vl~~~~~  671 (809)
T PRK14573        603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL-----Y-DTDVFVEESRLGSREIEVSCLGDGSS  671 (809)
T ss_pred             HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEeccCCCEEEEEEEEeCCCC
Confidence            455678999999999999999999999999999999988753     2 46799999998789999999998654

>PRK06849 hypothetical protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=161.90  Aligned_cols=172  Identities=13%  Similarity=0.124  Sum_probs=126.9

Q ss_pred             CCCCCC--ChhhhccceeEEcCCCC-cCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          4 PDPCVF--QRHVKLADEAVCIGPPV-AAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         4 ~d~~~~--~~~~~~ad~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      .|.++.  +...+.+|+++.+|.+. ++..|  .+.|+++++++++|+|+|+.+.........+.++ .+..+++++.++
T Consensus        34 ~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~  110 (389)
T PRK06849         34 ADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALLSIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCEVLHFDFEL  110 (389)
T ss_pred             EeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHHHHHHHcCCCEEEECChHHHhHHhhhhhhc-CCcEEEcCCHHH
Confidence            344544  34567899999885322 22334  4899999999999999999743211111223333 357788899999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      +..++||..++++++++|||+|+++  .+++.+++.++..+. +||+|+||..+++|.|+.++.+.+.+....       
T Consensus       111 ~~~~~DK~~~~~~~~~~GipvP~t~--~v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~-------  181 (389)
T PRK06849        111 LLLLHNKWEFAEQARSLGLSVPKTY--LITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELP-------  181 (389)
T ss_pred             HHHhhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccc-------
Confidence            9999999999999999999999975  688999988877766 899999999999999999988854432211       


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                        .....++++||||+ |.|+++..+..++.
T Consensus       182 --~~~~~~~ivQe~I~-G~e~~~~~~~~~G~  209 (389)
T PRK06849        182 --ISKDNPWVMQEFIQ-GKEYCSYSIVRSGE  209 (389)
T ss_pred             --cCCCCCeEEEEEec-CCeEEEEEEEECCE
Confidence              01124699999999 78888776654443

>PRK14016 cyanophycin synthetase; Provisional

Probab=99.82  E-value=3.6e-19  Score=163.70  Aligned_cols=159  Identities=26%  Similarity=0.403  Sum_probs=133.6

Q ss_pred             CCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCE--------EccccccCCCCHHHHHHHHHcCCeEeCC
Q psy10619          5 DPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADA--------VHPGYGFLSENASFVSRLKEEGVVFIGP   76 (246)
Q Consensus         5 d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~--------v~~~~~~~~e~~~~~~~~~~~g~~~~g~   76 (246)
                      |.|....+++.+++.+.++|        +...|++.|++.++++        +.+++|+.+      +.++..+..  ++
T Consensus       141 ~~~~~~~~~~~~~~~~~lgp--------st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~------~~i~~~~~~--~~  204 (727)
T PRK14016        141 DLEAALARLRELDEDERLGP--------STAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQ------RRIQAAETD--QT  204 (727)
T ss_pred             CHHHHHHHHHHHHHhcccCC--------CHHHHHHHHHHcCCCEEEeCCCCeEecCCcHHH------HHHHHhcCC--CC
Confidence            55677788888999988876        4579999999999998        556665533      334444443  58


Q ss_pred             CHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE-eCCHHHHHHHHHHH
Q psy10619         77 TAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANNDQEAIEGFKLS  155 (246)
Q Consensus        77 ~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~-v~~~~el~~~~~~~  155 (246)
                      +..++.++.||..++++|+++|||+|++.  .+.+.+++.++++++|||+|+||..|++|+||.+ +++.+++.++++.+
T Consensus       205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~~--~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a  282 (727)
T PRK14016        205 SAIAVDIACDKELTKRLLAAAGVPVPEGR--VVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA  282 (727)
T ss_pred             cHHHHHHhCCHHHHHHHHHHCCcCCCCee--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence            88999999999999999999999999975  6889999999999999999999999999999998 89999999999876


Q ss_pred             HHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        156 SQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       156 ~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ...      ...++||+|++ |.|+++.+++++
T Consensus       283 ~~~------~~~viVEe~I~-G~d~Rv~Vvgg~  308 (727)
T PRK14016        283 SKE------SSDVIVERYIP-GKDHRLLVVGGK  308 (727)
T ss_pred             HHh------CCeEEEEEecC-CceEEEEEECCE
Confidence            542      36799999999 899999887654

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=99.81  E-value=3.4e-19  Score=140.37  Aligned_cols=105  Identities=47%  Similarity=0.747  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      ||..++++++++|+|+|++....+.+.+++.++++++|||+++||..++||+|+.+++|.++|.++++.....+...|++
T Consensus         1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~   80 (211)
T PF02786_consen    1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD   80 (211)
T ss_dssp             SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence            89999999999999999987434599999999999999999999999999999999999999999999999988888888


Q ss_pred             CceEEEecccCcceEEEEeeeccee
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++|+|+.+.+|+.|++++|+.+
T Consensus        81 ~~v~iek~i~~~reiEvqvi~D~~g  105 (211)
T PF02786_consen   81 GPVLIEKFIEGAREIEVQVIRDGKG  105 (211)
T ss_dssp             S-EEEEE--SSEEEEEEEEEEETTS
T ss_pred             ceEEEeeehhhhhhhhhhhhhcccc
Confidence            9999999999779999999999876

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....

>PRK10446 ribosomal protein S6 modification protein; Provisional

Probab=99.79  E-value=4.1e-18  Score=142.27  Aligned_cols=135  Identities=22%  Similarity=0.274  Sum_probs=108.1

Q ss_pred             CCCEEccccccC-CCC-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619         45 RADAVHPGYGFL-SEN-ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI  122 (246)
Q Consensus        45 ~~d~v~~~~~~~-~e~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~  122 (246)
                      ++|++++..+.. ... ...+..++..|. ++++++.++.+++||..++++|+++|||+|++.  .+.+.+++.+++..+
T Consensus        57 ~~d~v~~~~~~~~~~~~~~~~~~le~~g~-~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~  133 (300)
T PRK10446         57 HFDAVIPRIGTAITFYGTAALRQFEMLGS-YPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDMV  133 (300)
T ss_pred             CCCEEEEcCCCchhhHHHHHHHHHHHCCC-ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHHh
Confidence            688888754221 111 123567889995 456999999999999999999999999999975  567788888877777


Q ss_pred             -CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc--CcceEEEEeeecc
Q psy10619        123 -GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK--NPRHIEIQGTTYK  188 (246)
Q Consensus       123 -~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~--~g~e~~v~v~~d~  188 (246)
                       +||+|+||.+|++|+|++++++.+++..++..+..     . +..++||+||+  .|+|+++.+++++
T Consensus       134 ~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~-----~-~~~~lvQe~I~~~~g~d~rv~vig~~  196 (300)
T PRK10446        134 GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRG-----L-NAHILVQEYIKEAQGCDIRCLVVGDE  196 (300)
T ss_pred             CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHh-----c-CCCEEEEeeeccCCCceEEEEEECCE
Confidence             79999999999999999999999998887776432     2 36799999995  3899999998754

>KOG0237|consensus

Probab=99.78  E-value=8.1e-18  Score=144.45  Aligned_cols=174  Identities=14%  Similarity=0.189  Sum_probs=144.5

Q ss_pred             CCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI  108 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~  108 (246)
                      .|.+++.++|+++++.+|+++.    |.+   .+...|.+.|+++|||+.+++.+..+|..+|++|.++|||+..+.  .
T Consensus        55 ~d~~ala~f~~e~~I~lVvvGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~--~  128 (788)
T KOG0237|consen   55 ADFEALASFCKEHNINLVVVGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYK--T  128 (788)
T ss_pred             hhHHHHHHHHHHcceeEEEECC----chhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceee--e
Confidence            4788999999999999999997    444   567889999999999999999999999999999999999999964  7


Q ss_pred             cCCHHHHHHHHHHhCC-cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619        109 IRDADHCVEIARDIGY-PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       109 ~~~~~~~~~~~~~~~~-P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      +++.+++..+.++.+| ++|||...-..|+||.+..+.+|..++++.++.......-...++|||+++ |.|+++-.+.|
T Consensus       129 ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LE-GeEvS~laftD  207 (788)
T KOG0237|consen  129 FTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLE-GEEVSFLAFTD  207 (788)
T ss_pred             eCCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcC-cceEEEEEEec
Confidence            8999999999999985 599999999999999999999999999999886533211136799999999 99999999999


Q ss_pred             ceeec-chhhhhhhhcCCCCCCCCcc
Q psy10619        188 KFLIQ-TEKEFEYAKLLPPKPKLDET  212 (246)
Q Consensus       188 ~~~v~-~~~~~~~~~~~~~~~~~~~~  212 (246)
                      ++.+. ++..-++.++...+..+.+.
T Consensus       208 G~s~~~mp~aQDHKRl~dgD~GpNTG  233 (788)
T KOG0237|consen  208 GYSVRPLPPAQDHKRLGDGDTGPNTG  233 (788)
T ss_pred             CcccccCCcccchhhhcCCCCCCCCC
Confidence            98864 44444444444444334333

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=99.78  E-value=1e-17  Score=138.24  Aligned_cols=166  Identities=20%  Similarity=0.301  Sum_probs=135.6

Q ss_pred             cCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619          3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR   82 (246)
Q Consensus         3 ~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~   82 (246)
                      .-|.++++|+..+||..+..       .|.|.+++.+++.+  +|+|.--++.  -.....+.+... .++. |+++++.
T Consensus        29 vLdp~~~~PA~~va~~~i~~-------~~dD~~al~ela~~--~DViT~EfE~--V~~~aL~~l~~~-~~v~-p~~~~l~   95 (375)
T COG0026          29 VLDPDADAPAAQVADRVIVA-------AYDDPEALRELAAK--CDVITYEFEN--VPAEALEKLAAS-VKVF-PSPDALR   95 (375)
T ss_pred             EecCCCCCchhhcccceeec-------CCCCHHHHHHHHhh--CCEEEEeecc--CCHHHHHHHHhh-cCcC-CCHHHHH
Confidence            45789999999999999874       46789999999998  7777644322  233445556555 5555 9999999


Q ss_pred             HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      +.+||...|++|+++|+|+|+|.  .+.+.+++..+++++|+|+|+|.+.|+ .|+|.+++++.+++...+.....    
T Consensus        96 ~~qdR~~eK~~l~~~Gi~va~~~--~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~----  169 (375)
T COG0026          96 IAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE----  169 (375)
T ss_pred             HHhhHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc----
Confidence            99999999999999999999975  799999999999999999999999877 99999999999888775554321    


Q ss_pred             hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                         ....++|+|++..+|+||-+.++..+
T Consensus       170 ---~~~~vlE~fV~F~~EiSvi~aR~~~G  195 (375)
T COG0026         170 ---GGVPVLEEFVPFEREISVIVARSNDG  195 (375)
T ss_pred             ---cCceeEEeecccceEEEEEEEEcCCC
Confidence               23349999999999999999876544

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103

Probab=99.78  E-value=1.7e-18  Score=154.57  Aligned_cols=166  Identities=19%  Similarity=0.293  Sum_probs=127.8

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCH--HHHHHHHHHhCCCEEccccccCCCCHHH-------HHHHHHcCCe
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINV--DKIIDAIRQTRADAVHPGYGFLSENASF-------VSRLKEEGVV   72 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~d~v~~~~~~~~e~~~~-------~~~~~~~g~~   72 (246)
                      +|+..|.++.     |+.+.++|.+...  +++  +.|++.|++.++++++...    ++..+       ...+++ .+.
T Consensus       217 ~y~~~d~~~~-----~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~s----e~~~~~L~~g~~~~~~~~-s~~  284 (547)
T TIGR03103       217 VFALKRKNAI-----NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLDA----EGGLFRLSLGGRSIRCRE-SLS  284 (547)
T ss_pred             EEEEeccCCc-----CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEECC----CCCEEEecCCceEEEEEe-ccC
Confidence            4566666666     8888887654432  555  8999999999999998653    11100       001111 111


Q ss_pred             EeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE-eCCHHHHHHH
Q psy10619         73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANNDQEAIEG  151 (246)
Q Consensus        73 ~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~-v~~~~el~~~  151 (246)
                       ..+++.++.+|.||..++++|+++|||+|++.  .+.+.+++.++++++| |+||||..|++|+|+.+ +++.+++..+
T Consensus       285 -~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~--~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a  360 (547)
T TIGR03103       285 -ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQ--LAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAA  360 (547)
T ss_pred             -CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHH
Confidence             12688999999999999999999999999976  5788888988888998 69999999999999997 8999999999


Q ss_pred             HHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        152 FKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       152 ~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      +......      ...+|||+|++ |.|+++.|+++...
T Consensus       361 ~~~a~~~------~~~vlvEe~i~-G~d~Rv~Vigg~vv  392 (547)
T TIGR03103       361 IAKARQF------CDRVLLERYVP-GEDLRLVVIDFEVV  392 (547)
T ss_pred             HHHHHhc------CCcEEEEEecc-CCeEEEEEECCEEE
Confidence            9886532      35799999999 89999987765443

Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX

Probab=99.78  E-value=7.5e-18  Score=139.45  Aligned_cols=124  Identities=19%  Similarity=0.276  Sum_probs=101.8

Q ss_pred             HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619         61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR  140 (246)
Q Consensus        61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~  140 (246)
                      .+...++..|++++ ++++++.++.||..++++|+++|||+|++.  .+.+.+++..+...++||+|+||..|++|+|+.
T Consensus        63 ~~~~~le~~g~~~~-n~~~~~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~  139 (280)
T TIGR02144        63 YSARLLEALGVPVI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTY--LAFDREAALKLAEALGYPVVLKPVIGSWGRLVA  139 (280)
T ss_pred             HHHHHHHHCCCcEE-CcHHHHHHHhhHHHHHHHHHHCCcCCCCeE--eeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEE
Confidence            45667888999998 567999999999999999999999999975  567888888888889999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeecce
Q psy10619        141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYKF  189 (246)
Q Consensus       141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~  189 (246)
                      ++++.+++.++++.....  .......+++|+||++ ++++++.++++..
T Consensus       140 ~v~~~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig~~~  187 (280)
T TIGR02144       140 LIRDKDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIGDEA  187 (280)
T ss_pred             EECCHHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEECCEE
Confidence            999999998876542211  0111356999999985 7889998886653

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family

Probab=99.76  E-value=2.7e-17  Score=135.75  Aligned_cols=121  Identities=23%  Similarity=0.339  Sum_probs=100.4

Q ss_pred             HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619         61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR  140 (246)
Q Consensus        61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~  140 (246)
                      .+.+.++..|++++ ++++++..+.||..++++|+++|+|+|++.  .+.+.+++.++..+++||+|+||..|++|+|+.
T Consensus        64 ~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~--~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~  140 (277)
T TIGR00768        64 AVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTG--LAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVS  140 (277)
T ss_pred             HHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHhcCCCEEEEECcCCCCCceE
Confidence            56778888999998 568999999999999999999999999975  678899998889999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc--ceEEEEeeec
Q psy10619        141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP--RHIEIQGTTY  187 (246)
Q Consensus       141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g--~e~~v~v~~d  187 (246)
                      ++++.+++..++.......   .....+++|+||++.  .++++.++++
T Consensus       141 ~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~~~  186 (277)
T TIGR00768       141 LARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVVGD  186 (277)
T ss_pred             EEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEECC
Confidence            9999999988776543210   012479999999952  4666666544

This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional

Probab=99.73  E-value=1.4e-16  Score=134.39  Aligned_cols=157  Identities=18%  Similarity=0.219  Sum_probs=111.4

Q ss_pred             ChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHH
Q psy10619         10 QRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLE   89 (246)
Q Consensus        10 ~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~   89 (246)
                      .+..+++|+++.+...   .+..+.+...++++.   +.++..+|.+..... .+.+...+++++| +.+++++.+||..
T Consensus        55 y~~~~~~De~i~v~~~---~di~~~~~~~~l~~~---~~iiIp~gs~v~y~~-~d~l~~~~~p~~g-n~~~l~~e~dK~~  126 (358)
T PRK13278         55 YKRFPVADEFIIVDDF---SDILNEAVQEKLREM---NAILIPHGSFVAYLG-LENVEKFKVPMFG-NREILRWEADRDK  126 (358)
T ss_pred             cccccccceEEEEcch---hhhcCHHHHHHHhhc---CcEEEeCCCcceeec-HHHHHHCCCCcCC-CHHHHHHhcCHHH
Confidence            4566778998887411   011222333333333   443333344332223 3344478899885 7789999999999


Q ss_pred             HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceE
Q psy10619         90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRIL  169 (246)
Q Consensus        90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~l  169 (246)
                      ++++|+++|||+|++    +.+.++       ++||+||||..+.||+|+++++|.+|+.++++.+........ ...++
T Consensus       127 ~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~i  194 (358)
T PRK13278        127 ERKLLEEAGIRIPRK----YESPED-------IDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAI  194 (358)
T ss_pred             HHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEE
Confidence            999999999999994    344443       579999999999999999999999999999988754211111 46799


Q ss_pred             EEecccCcceEEEEeeec
Q psy10619        170 VEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       170 ve~~i~~g~e~~v~v~~d  187 (246)
                      |||||. |.||+++.+..
T Consensus       195 IEEfI~-G~e~sv~~f~s  211 (358)
T PRK13278        195 IQEYVV-GVPYYFHYFYS  211 (358)
T ss_pred             EEecCC-CcEEEEEEEEe
Confidence            999999 89999998864

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A

Probab=99.72  E-value=3.9e-17  Score=126.60  Aligned_cols=103  Identities=21%  Similarity=0.418  Sum_probs=80.6

Q ss_pred             HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619         83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAAS  162 (246)
Q Consensus        83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~  162 (246)
                      +++||..++++++++|+|+|++.  .+.+.+++..+...++||+|+||..++||.|++++++.+++.++++.+.....  
T Consensus         1 ~~~dK~~~~~~~~~~gv~~P~~~--~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~--   76 (184)
T PF13535_consen    1 RCNDKYRMRELLKKAGVPVPKTR--IVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP--   76 (184)
T ss_dssp             -TCCHHHHHHHHHHHTS----EE--EECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred             CCCCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence            47899999999999999999965  78999999999999999999999999999999999999999999988865321  


Q ss_pred             cCCCceEEEecccCcceEEEEeeeccee
Q psy10619        163 FGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       163 ~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .....+++|+||+ |.|+++.++.....
T Consensus        77 ~~~~~~ivqe~i~-g~e~~~~~~~~~G~  103 (184)
T PF13535_consen   77 LGNGPVIVQEYIP-GDEYSVDGVVDDGE  103 (184)
T ss_dssp             -HSSSEEEEE----SEEEEEEEEEETTE
T ss_pred             cCCccEEEEEeee-eeeEEEEEEEEcce
Confidence            1136799999999 89999998765433

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6

Probab=99.69  E-value=5.9e-17  Score=124.57  Aligned_cols=130  Identities=22%  Similarity=0.340  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcE-EEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPV-MIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG  164 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~-vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~  164 (246)
                      +|..+|++|+++|||++++.  .+++.+++.+++++.++|+ |||+....+|+||.++++.+|..+++++++..  ..++
T Consensus         2 SK~faK~fm~~~~IPTa~~~--~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~fg   77 (194)
T PF01071_consen    2 SKSFAKEFMKRYGIPTAKYK--VFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKFG   77 (194)
T ss_dssp             BHHHHHHHHHHTT-SB--EE--EESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STTC
T ss_pred             CHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--cccC
Confidence            79999999999999999864  7999999999999999999 99999999999999999999999999998753  2233


Q ss_pred             --CCceEEEecccCcceEEEEeeecceeec-chhhhhhhhcCCCCCCCCccc-ceecccc
Q psy10619        165 --DDRILVEKFIKNPRHIEIQGTTYKFLIQ-TEKEFEYAKLLPPKPKLDETK-ILHAPMP  220 (246)
Q Consensus       165 --~~~~lve~~i~~g~e~~v~v~~d~~~v~-~~~~~~~~~~~~~~~~~~~~~-~l~sp~p  220 (246)
                        ...++||||+. |.|+|+.++.|+..+. ++...++.+.......+.+.+ .-.+|.|
T Consensus        78 ~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p  136 (194)
T PF01071_consen   78 DAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVP  136 (194)
T ss_dssp             CCGSSEEEEE----SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTT
T ss_pred             CCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCccceeecc
Confidence              36799999999 9999999999998754 455556655555444444442 2444444

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=99.69  E-value=1.8e-16  Score=148.64  Aligned_cols=202  Identities=20%  Similarity=0.261  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619         33 NVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR  110 (246)
Q Consensus        33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~  110 (246)
                      +...|++.|.+++|++.....+.+-..  +...+..+.  -..-..+..++.++.||..++++|+++|||+|++.  .+.
T Consensus       160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~--~~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~--~~~  235 (864)
T TIGR02068       160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQA--TETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGT--VVQ  235 (864)
T ss_pred             cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEe--ecCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEC
Confidence            457788888888888766442211000  000010100  01112567889999999999999999999999975  688


Q ss_pred             CHHHHHHHHHHhCCcEEEEeccCCCCceeEE-eCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        111 DADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       111 ~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~-v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +.+++.++++++|||+|+||.++++|+||.+ +++.+++.++++.+...      ...+|||+|++ |+||++.+++++-
T Consensus       236 s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~-G~e~rvlVv~~~v  308 (864)
T TIGR02068       236 SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFIT-GRDHRLLVVGGKV  308 (864)
T ss_pred             CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEecc-CCEEEEEEECCEE
Confidence            9999999999999999999999999999998 99999999999887542      36799999999 8999998876543


Q ss_pred             eecc---------hhhhhhhhcCC-----CCCCCCcc-----cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        190 LIQT---------EKEFEYAKLLP-----PKPKLDET-----KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       190 ~v~~---------~~~~~~~~~~~-----~~~~~~~~-----~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ....         ........++.     |.......     -.+-..+...+.+-++..-+-..+|+.|..-++
T Consensus       309 vaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~  383 (864)
T TIGR02068       309 VAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRAT  383 (864)
T ss_pred             EEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecc
Confidence            3221         11111111111     11110000     112222334556667777777888888876654

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Probab=99.67  E-value=7.9e-16  Score=139.69  Aligned_cols=161  Identities=16%  Similarity=0.145  Sum_probs=114.0

Q ss_pred             CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCC---HHHHHHH
Q psy10619         76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANN---DQEAIEG  151 (246)
Q Consensus        76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~---~~el~~~  151 (246)
                      .+..+..+|.||..++++|+++|||+|++.  .+.+.+++.+....+ +||+||||.++++|+||.++.+   .+++.++
T Consensus       465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~--~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A  542 (737)
T TIGR01435       465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGD--EFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA  542 (737)
T ss_pred             ccHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence            466778999999999999999999999975  677877777766666 6999999999999999999765   7888888


Q ss_pred             HHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee---------ecchhhhhhhhcCC-----CCCCCC----ccc
Q psy10619        152 FKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL---------IQTEKEFEYAKLLP-----PKPKLD----ETK  213 (246)
Q Consensus       152 ~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~---------v~~~~~~~~~~~~~-----~~~~~~----~~~  213 (246)
                      +..++.     + +..+|||+||+ |+||++.|++++..         |...+......++.     |.-...    ...
T Consensus       543 l~~A~~-----~-~~~VLVEefI~-G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~  615 (737)
T TIGR01435       543 LNIAFS-----E-DSSVIIEEFLP-GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEK  615 (737)
T ss_pred             HHHHHh-----c-CCeEEEEeccc-CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCccc
Confidence            876543     2 46799999999 99999999977644         22222223322221     100000    001


Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .........+.+-++..-+-..+|+.|...++
T Consensus       616 I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~  647 (737)
T TIGR01435       616 ITGPEETLMLKEQGLTIDSIPKKEQIVYLREN  647 (737)
T ss_pred             ccchHHHHHHHHcCCCccccCCCCCEEEEcCC
Confidence            11111223455677777888999999987765

gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional

Probab=99.67  E-value=9.2e-16  Score=141.01  Aligned_cols=204  Identities=14%  Similarity=0.091  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHhCCCEEccccc-cCCCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYG-FLSEN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI  108 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~-~~~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~  108 (246)
                      .+...+++.|.+.++++.+.... .+...  ..-...+...+. ...++..+..+|.||..++++|+++|||+|++.  .
T Consensus       432 ~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~~~-t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~--~  508 (752)
T PRK02471        432 LSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNM-TSKDNYISPLIMENKVVTKKILAEAGFPVPAGD--E  508 (752)
T ss_pred             hhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEeccc-cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEE--E
Confidence            56689999999999998875531 10000  000000011111 112445567888999999999999999999975  6


Q ss_pred             cCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEe---CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEe
Q psy10619        109 IRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIA---NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG  184 (246)
Q Consensus       109 ~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v---~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v  184 (246)
                      +.+.+++..++..+ |||+||||.+|++|+||.++   ++.+++.+++..++.     + +..+|||+||+ |+||+|.+
T Consensus       509 ~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~-----~-~~~vlVEEfI~-G~E~Rv~V  581 (752)
T PRK02471        509 FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFR-----E-DSSVLVEEFIV-GTEYRFFV  581 (752)
T ss_pred             EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHh-----c-CCcEEEEeccc-CCEEEEEE
Confidence            78888887777664 89999999999999999985   568888888877543     2 46799999999 99999998


Q ss_pred             eeccee---------ecchhhhhhhhcCC---CCC--CCCccc-----ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        185 TTYKFL---------IQTEKEFEYAKLLP---PKP--KLDETK-----ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       185 ~~d~~~---------v~~~~~~~~~~~~~---~~~--~~~~~~-----~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ++++..         |...+......++.   ..+  ......     .+-......+.+-++..-+-..+||.|...++
T Consensus       582 iggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~  661 (752)
T PRK02471        582 LDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLREN  661 (752)
T ss_pred             ECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCC
Confidence            865432         11222222222221   100  000000     01112223455677788888899999887665

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2.2e-15  Score=125.67  Aligned_cols=139  Identities=23%  Similarity=0.373  Sum_probs=107.7

Q ss_pred             CCCEEccccccCCCC-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHH-Hh
Q psy10619         45 RADAVHPGYGFLSEN-ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIAR-DI  122 (246)
Q Consensus        45 ~~d~v~~~~~~~~e~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~  122 (246)
                      ..|++++..+..... ..+.+.++..|++++ +++.++..|+||..+.++|..+|+|+|++.  ...+.+++..+.+ .+
T Consensus        78 ~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~--i~~~~~~~~~~~~~~~  154 (318)
T COG0189          78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTL--ITRDPDEAAEFVAEHL  154 (318)
T ss_pred             cCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEE--EEcCHHHHHHHHHHhc
Confidence            567777664322222 356778999999999 999999999999999999999999999975  6777666665554 56


Q ss_pred             CCcEEEEeccCCCCceeEEeCCHH-HHHHHHHHHHHHHHhhcCCCceEEEecccCcc-eEEEEeeecceee
Q psy10619        123 GYPVMIKASAGGGGKGMRIANNDQ-EAIEGFKLSSQEAAASFGDDRILVEKFIKNPR-HIEIQGTTYKFLI  191 (246)
Q Consensus       123 ~~P~vvKp~~g~g~~gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~-e~~v~v~~d~~~v  191 (246)
                      |||+|+||.+|++|+||++++|.+ ++.+.+..+..     .+...+|+|+||+... +...-+++++..+
T Consensus       155 g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~-----~~~~~~ivQeyi~~~~~~~rrivv~~~~~~  220 (318)
T COG0189         155 GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQ-----EGRKLIIVQEYIPKAKRDDRRVLVGGGEVV  220 (318)
T ss_pred             CCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhc-----cccceEehhhhcCcccCCcEEEEEeCCEEe
Confidence            899999999999999999999999 88877776543     1123599999998743 5555566665543

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=4.3e-15  Score=123.67  Aligned_cols=137  Identities=23%  Similarity=0.372  Sum_probs=117.7

Q ss_pred             hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCC----HHHHHHH
Q psy10619         44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRD----ADHCVEI  118 (246)
Q Consensus        44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~----~~~~~~~  118 (246)
                      .++|+++|. +|+..|+..++.+++..|+|++|++..+...++||..+|.+++..|+|++++.  .++.    .....+.
T Consensus        60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~--~~~~~~~~~~~~e~~  137 (317)
T COG1181          60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYV--ALTRDEYSSVIVEEV  137 (317)
T ss_pred             ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCcccee--eeecccchhHHHHHh
Confidence            457777776 57788999999999999999999999999999999999999999999999975  3332    2223455


Q ss_pred             HHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        119 ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       119 ~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ...++||++|||...++|.|+..+++.+|+..+++.++..      +.++++|+++. ++|++|.++++..
T Consensus       138 ~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~  201 (317)
T COG1181         138 EEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY  201 (317)
T ss_pred             hcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc
Confidence            6678999999999999999999999999999977776652      68899999999 9999999998854

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6

Probab=99.62  E-value=8.2e-16  Score=120.80  Aligned_cols=89  Identities=26%  Similarity=0.479  Sum_probs=70.1

Q ss_pred             HHHHhCCCCCCCCccccCCHHH----HHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCce
Q psy10619         93 LAKEAGVNIIPGFNGIIRDADH----CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRI  168 (246)
Q Consensus        93 ~l~~~gip~p~~~~~~~~~~~~----~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~  168 (246)
                      +|+.+|||+|+++  .+...+.    .......++||++|||.++++|.|+.+++|.+++..++..++.     + ++.+
T Consensus         1 l~~~~gI~tp~~~--~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~-----~-~~~v   72 (203)
T PF07478_consen    1 LLKSAGIPTPPYV--VVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK-----Y-DDDV   72 (203)
T ss_dssp             HHHHTT-BB-SEE--EEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT-----T-HSEE
T ss_pred             ChhhcCCCCCCEE--EEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh-----h-cceE
Confidence            5889999999986  3443322    2345678999999999999999999999999999999988653     3 4789


Q ss_pred             EEEecccCcceEEEEeeeccee
Q psy10619        169 LVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       169 lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      |||+||+ |+|++|.+++++..
T Consensus        73 lVEefI~-G~E~tv~vl~~~~~   93 (203)
T PF07478_consen   73 LVEEFIS-GREFTVGVLGNGEP   93 (203)
T ss_dssp             EEEE--S-SEEEEEEEEESSST
T ss_pred             EEEeeec-ccceEEEEEecCCc
Confidence            9999998 99999999997653

3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional

Probab=99.56  E-value=6.7e-14  Score=116.77  Aligned_cols=153  Identities=16%  Similarity=0.193  Sum_probs=108.9

Q ss_pred             hccceeEEcCCCCcCCCCCC--HHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHh--cCHHH
Q psy10619         14 KLADEAVCIGPPVAAQSYIN--VDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGM--GDKLE   89 (246)
Q Consensus        14 ~~ad~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~--~dK~~   89 (246)
                      .++|+++.++      +|.+  .+.+.+.+++.  ++|+.-++.+.+.........+..+|++|+. ..+++-  +||..
T Consensus        59 ~~~d~~i~~~------~f~~~~~~~~~~~l~~~--n~i~iPh~sf~~y~g~~~ie~~~~vp~fGnr-~~lrwE~~~dKk~  129 (366)
T PRK13277         59 GIVDEVIVLD------KFKDILSEKVQDELREE--NAIFVPNRSFAVYVGYDAIENEFKVPIFGNR-YLLRWEERTGEKN  129 (366)
T ss_pred             cccceEEEec------chhhhhhHHHHHHHHHC--CeEEecCCCeEEEecHHHHhhcCCCCcccCH-HHhhhhhccCHHH
Confidence            3689999875      2332  23555555553  4666666665554444444446899999776 455444  78888


Q ss_pred             HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCC--CceeEEeCCHHHHHHHHHHHHHHHHh-hcCCC
Q psy10619         90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGG--GKGMRIANNDQEAIEGFKLSSQEAAA-SFGDD  166 (246)
Q Consensus        90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g--~~gv~~v~~~~el~~~~~~~~~~~~~-~~~~~  166 (246)
                      +.++|+++||++|+.+    .++       .++.+|++|||..++|  |+|+++++|.+|+......+.....- .....
T Consensus       130 ~yk~L~~aGI~~Pk~~----~~p-------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~  198 (366)
T PRK13277        130 YYWLLEKAGIPYPKLF----KDP-------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLK  198 (366)
T ss_pred             HHHHHHHcCCCCceee----cCc-------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccc
Confidence            8889999999999964    333       3568999999999999  99999999999998887665421000 00114


Q ss_pred             ceEEEecccCcceEEEEeeec
Q psy10619        167 RILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       167 ~~lve~~i~~g~e~~v~v~~d  187 (246)
                      +++|||||. |.||+++++.+
T Consensus       199 ~~iIQEyI~-G~ey~~d~F~s  218 (366)
T PRK13277        199 NARIEEYVI-GAHFNFNYFYS  218 (366)
T ss_pred             cceeEeccC-CCEEEEEEEEe
Confidence            567999999 89999999987

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []

Probab=99.55  E-value=1.7e-14  Score=112.56  Aligned_cols=99  Identities=24%  Similarity=0.397  Sum_probs=64.3

Q ss_pred             hcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619         84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAAS  162 (246)
Q Consensus        84 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~  162 (246)
                      +.||..+.++|+++|||+|++.  .+.+.+++.++.+.+ ++|+|+||..|+.|.||.++++.+++...+.....     
T Consensus         1 a~dK~~~~~~l~~~gipvP~t~--~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~-----   73 (190)
T PF08443_consen    1 AEDKLLTLQLLAKAGIPVPETR--VTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKR-----   73 (190)
T ss_dssp             -HBHHHHHHHHHHTT-----EE--EESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred             CCCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHh-----
Confidence            3699999999999999999965  788999999999999 89999999999999999999999999888776432     


Q ss_pred             cCCCceEEEecccCc--ceEEEEeeeccee
Q psy10619        163 FGDDRILVEKFIKNP--RHIEIQGTTYKFL  190 (246)
Q Consensus       163 ~~~~~~lve~~i~~g--~e~~v~v~~d~~~  190 (246)
                       .+..+++|+||+..  ++++|.++++...
T Consensus        74 -~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv  102 (190)
T PF08443_consen   74 -LENPILVQEFIPKDGGRDLRVYVIGGKVV  102 (190)
T ss_dssp             --TTT-EEEE----SS---EEEEEETTEEE
T ss_pred             -ccCcceEeccccCCCCcEEEEEEECCEEE
Confidence             14678999999863  5999999987654

It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.

>KOG0370|consensus

Probab=99.49  E-value=5.5e-14  Score=126.58  Aligned_cols=162  Identities=17%  Similarity=0.309  Sum_probs=138.5

Q ss_pred             hhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHH
Q psy10619         13 VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENASFVSRLKEEGVVFIGPTAECIRGMGDKLESK   91 (246)
Q Consensus        13 ~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~   91 (246)
                      ...||..|+..        ++.+.++++-..++...++...|+. ..|  ++-.|.+.|++++|.+++.+..+.|+..+-
T Consensus       969 yDecdrLYFee--------is~E~vmDiYe~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS 1038 (1435)
T KOG0370|consen  969 YDECDRLYFEE--------ISYERVMDIYELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFS 1038 (1435)
T ss_pred             hHHHhhHhHhh--------hhhhhhhhhhhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHH
Confidence            34577666542        5678899999999999998887653 333  455688999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEE
Q psy10619         92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVE  171 (246)
Q Consensus        92 ~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve  171 (246)
                      +.|.+.|+..|+|.  .+++.+++.++++..||||++.|.+--+|..+.++++.++|+..++++...+    .++++++.
T Consensus      1039 ~~Ld~i~v~Qp~Wk--elt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVis 1112 (1435)
T KOG0370|consen 1039 RMLDSIGVDQPAWK--ELTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVIS 1112 (1435)
T ss_pred             HHHHHcCCCchhhh--hhccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhH
Confidence            99999999999986  6899999999999999999999999999999999999999999998876542    36889999


Q ss_pred             ecccCcceEEEEeeeccee
Q psy10619        172 KFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       172 ~~i~~g~e~~v~v~~d~~~  190 (246)
                      +||++.+|+.++.+.....
T Consensus      1113 Kfie~AkEidvDAVa~~G~ 1131 (1435)
T KOG0370|consen 1113 KFIEGAKEIDVDAVASDGK 1131 (1435)
T ss_pred             HhhcccceechhhhccCCe
Confidence            9999999999997765444

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Probab=99.47  E-value=2e-13  Score=104.04  Aligned_cols=87  Identities=22%  Similarity=0.347  Sum_probs=72.0

Q ss_pred             HHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEecc-CCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEe
Q psy10619         94 AKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA-GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEK  172 (246)
Q Consensus        94 l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~-g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~  172 (246)
                      |+++|||+|++.  .+.+.+++.++++++|||+|+|+.. |..|+|..++++.+|+..+++.+        +...+++|+
T Consensus         1 l~~~gip~~~~~--~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~   70 (172)
T PF02222_consen    1 LDELGIPTAPYA--TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE   70 (172)
T ss_dssp             HHHTT--B-EEE--EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred             CcccCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence            688999999975  7999999999999999999999655 55999999999999999999875        257899999


Q ss_pred             cccCcceEEEEeeeccee
Q psy10619        173 FIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       173 ~i~~g~e~~v~v~~d~~~  190 (246)
                      |++..+|+++.+.++..+
T Consensus        71 ~v~f~~EiSvivaR~~~G   88 (172)
T PF02222_consen   71 FVPFDREISVIVARDQDG   88 (172)
T ss_dssp             ---ESEEEEEEEEEETTS
T ss_pred             ccCCcEEEEEEEEEcCCC
Confidence            999999999999997765

This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....

>PLN02941 inositol-tetrakisphosphate 1-kinase

Probab=99.46  E-value=8.4e-13  Score=110.12  Aligned_cols=141  Identities=11%  Similarity=0.172  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhCCCEEccccc-cC--------------CCC-H-HH-HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHH
Q psy10619         34 VDKIIDAIRQTRADAVHPGYG-FL--------------SEN-A-SF-VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAK   95 (246)
Q Consensus        34 ~~~l~~~~~~~~~d~v~~~~~-~~--------------~e~-~-~~-~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~   95 (246)
                      ...+++.+++++++++..... .+              +.. . .+ ....+..|++++ ++++++..|.||..+..+|.
T Consensus        38 ~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~  116 (328)
T PLN02941         38 QPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVA  116 (328)
T ss_pred             hHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHH
Confidence            355788999999888765432 11              100 0 11 223456789988 99999999999999999999


Q ss_pred             HhC-------CCCCCCCccccCCHHHHH---HHHHHhCCcEEEEeccC---CCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619         96 EAG-------VNIIPGFNGIIRDADHCV---EIARDIGYPVMIKASAG---GGGKGMRIANNDQEAIEGFKLSSQEAAAS  162 (246)
Q Consensus        96 ~~g-------ip~p~~~~~~~~~~~~~~---~~~~~~~~P~vvKp~~g---~g~~gv~~v~~~~el~~~~~~~~~~~~~~  162 (246)
                      ++|       ||+|+++  ++.+.+.+.   ....+++||+|+||..|   +.|+++.++.+++.+...           
T Consensus       117 ~~~~~~~~~~i~~P~t~--v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l-----------  183 (328)
T PLN02941        117 DLKLSDGYGSVGVPKQL--VVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL-----------  183 (328)
T ss_pred             HcCCcccCCCCCCCCEE--EEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc-----------
Confidence            999       9999975  677766533   33467899999999999   788899999999887651           


Q ss_pred             cCCCceEEEecccC-cceEEEEeeeccee
Q psy10619        163 FGDDRILVEKFIKN-PRHIEIQGTTYKFL  190 (246)
Q Consensus       163 ~~~~~~lve~~i~~-g~e~~v~v~~d~~~  190 (246)
                        ...+++||||+. |+.|.|-|+++...
T Consensus       184 --~~p~~lQEfVnh~g~d~RVfVvGd~v~  210 (328)
T PLN02941        184 --EPPLVLQEFVNHGGVLFKVYVVGDYVK  210 (328)
T ss_pred             --CCcEEEEEecCCCCEEEEEEEECCEEE
Confidence              246999999955 88999999998864

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=99.43  E-value=1.9e-13  Score=96.40  Aligned_cols=81  Identities=46%  Similarity=0.813  Sum_probs=74.8

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +|+++.|..+.+..+||+.|.+|+.+...+|++.+.++++++++++|+++|++++++|+..+++.+++.|+.++||++++
T Consensus        30 ~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~  109 (110)
T PF00289_consen   30 AVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEA  109 (110)
T ss_dssp             EEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHH
T ss_pred             eccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHh
Confidence            47889999999999999999999888889999999999999999999999999999999999999999999999999987


Q ss_pred             H
Q psy10619         81 I   81 (246)
Q Consensus        81 ~   81 (246)
                      +
T Consensus       110 i  110 (110)
T PF00289_consen  110 I  110 (110)
T ss_dssp             H
T ss_pred             C
Confidence            5

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK12458 glutathione synthetase; Provisional

Probab=99.36  E-value=9.7e-12  Score=105.23  Aligned_cols=110  Identities=15%  Similarity=0.236  Sum_probs=85.0

Q ss_pred             HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCceeEEeCC
Q psy10619         66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGKGMRIANN  144 (246)
Q Consensus        66 ~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~gv~~v~~  144 (246)
                      ++..|++++ ++++++..+.||..+..+++   +++|++.  ...+.+++.++++..++| +|+||..|++|+|++++++
T Consensus       110 ~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~--v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~  183 (338)
T PRK12458        110 AARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTH--ISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEK  183 (338)
T ss_pred             HHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEE--EeCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEec
Confidence            356788877 99999999999999977665   6788864  567888888888888765 9999999999999999976


Q ss_pred             HHH--HHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeecc
Q psy10619        145 DQE--AIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTYK  188 (246)
Q Consensus       145 ~~e--l~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d~  188 (246)
                      .++  +...++.+..       ...+|+|+||++  +.++++-++++.
T Consensus       184 ~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv~g~  224 (338)
T PRK12458        184 SAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLLNGE  224 (338)
T ss_pred             CChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEECCE
Confidence            653  4444443321       357999999984  357777766554

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=99.34  E-value=7e-12  Score=108.31  Aligned_cols=102  Identities=23%  Similarity=0.298  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +++.+|++|+++|||+|++.  .+++.+++.+++.++ +||+|+||....+++    ||.+.+|.+++.++++++.....
T Consensus         4 ~e~~ak~lL~~~gIpvp~~~--~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~   81 (388)
T PRK00696          4 HEYQAKELFAKYGVPVPRGI--VATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL   81 (388)
T ss_pred             CHHHHHHHHHHcCCCCCCCe--eeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence            67889999999999999975  789999999999999 999999998654444    89999999999999988875311


Q ss_pred             ---hh--cC--CCceEEEecccCcceEEEEeeecce
Q psy10619        161 ---AS--FG--DDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ---~~--~~--~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                         ..  .+  -..++||+|++++.|+.+.+..|..
T Consensus        82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~  117 (388)
T PRK00696         82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRA  117 (388)
T ss_pred             eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCC
Confidence               00  01  1359999999989999999999864

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=99.33  E-value=1.4e-11  Score=106.42  Aligned_cols=102  Identities=20%  Similarity=0.331  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC-CcEEEEeccC--C--CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAG--G--GGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~g--~--g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +.+..|++|+++|||+|++.  .+++.+++.++++++| ||+|+||...  +  ++.||.+++|.+++.+++++++....
T Consensus         4 ~E~~aK~ll~~~GIpvp~~~--~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~   81 (386)
T TIGR01016         4 HEYQAKQIFAKYGIPVPRGY--VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL   81 (386)
T ss_pred             cHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence            56788999999999999976  6789999999999999 9999999822  2  23389999999999999988764211


Q ss_pred             hhc-----C--CCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASF-----G--DDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~-----~--~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ...     +  -..++||+|+++|+|+.+.++.|+.
T Consensus        82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~  117 (386)
T TIGR01016        82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS  117 (386)
T ss_pred             eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence            100     0  1369999999989999999999864

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>TIGR01380 glut_syn glutathione synthetase, prokaryotic

Probab=99.32  E-value=3.1e-11  Score=101.29  Aligned_cols=131  Identities=16%  Similarity=0.220  Sum_probs=97.3

Q ss_pred             CCCEEccccccC-CC-C---HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH
Q psy10619         45 RADAVHPGYGFL-SE-N---ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA  119 (246)
Q Consensus        45 ~~d~v~~~~~~~-~e-~---~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~  119 (246)
                      ++|++++..... .. .   ..+.+.++..|++++ +++.+++.+.||..+.+++.    ++|++.  ...+.+++.+++
T Consensus        78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~--v~~~~~~~~~~~  150 (312)
T TIGR01380        78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTL--VTRDKAEIRAFL  150 (312)
T ss_pred             cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEE--EeCCHHHHHHHH
Confidence            588888664211 11 1   256788888999988 99999999999999887753    789965  567888999998


Q ss_pred             HHhCCcEEEEeccCCCCceeEEeCCH-HHHHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeecc
Q psy10619        120 RDIGYPVMIKASAGGGGKGMRIANND-QEAIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTYK  188 (246)
Q Consensus       120 ~~~~~P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d~  188 (246)
                      +..+ |+|+||..|++|+|++++++. .++...++.+.     ..+...+++|+||+.  +.++++-++++.
T Consensus       151 ~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~  216 (312)
T TIGR01380       151 AEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLIDGE  216 (312)
T ss_pred             HHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEECCe
Confidence            8887 999999999999999998653 33333332221     112357999999974  569999888764

This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.

>PRK05246 glutathione synthetase; Provisional

Probab=99.30  E-value=7.2e-11  Score=99.35  Aligned_cols=130  Identities=14%  Similarity=0.229  Sum_probs=95.5

Q ss_pred             CCCEEccccccC-CC----CHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH
Q psy10619         45 RADAVHPGYGFL-SE----NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA  119 (246)
Q Consensus        45 ~~d~v~~~~~~~-~e----~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~  119 (246)
                      .+|+|++..... ..    ...+.+.++..|++++ +++.++..+.||..+.+++.    ++|++.  ...+.+++.+++
T Consensus        79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~--~~~~~~~~~~~~  151 (316)
T PRK05246         79 DFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTL--VTRDKAEIRAFR  151 (316)
T ss_pred             cCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEE--EeCCHHHHHHHH
Confidence            378888653211 11    1245677777899988 88999999999999888765    788864  677888888888


Q ss_pred             HHhCCcEEEEeccCCCCceeEEeCC-HHHHHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeec
Q psy10619        120 RDIGYPVMIKASAGGGGKGMRIANN-DQEAIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTY  187 (246)
Q Consensus       120 ~~~~~P~vvKp~~g~g~~gv~~v~~-~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d  187 (246)
                      ++.+ |+|+||..|++|+|+.++.. ..++...++.+..     .+...+++|+||+.  +.++++-++++
T Consensus       152 ~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv~g  216 (316)
T PRK05246        152 AEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLVDG  216 (316)
T ss_pred             HHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEECC
Confidence            8887 99999999999999999943 3444433333221     22467999999975  46899888854

>KOG0370|consensus

Probab=99.28  E-value=2.6e-12  Score=116.08  Aligned_cols=204  Identities=20%  Similarity=0.293  Sum_probs=163.7

Q ss_pred             ccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCC-H--HH--HHHHHHcCCeEeCCCHHHHHHhcCHHH
Q psy10619         15 LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSEN-A--SF--VSRLKEEGVVFIGPTAECIRGMGDKLE   89 (246)
Q Consensus        15 ~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~-~--~~--~~~~~~~g~~~~g~~~~~~~~~~dK~~   89 (246)
                      +||+.|.+|        .+.+.+-..++.+++|++..++|+.... .  .+  .-.+++.|++++|.+.+++....|+..
T Consensus       430 lAD~vyflp--------vT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~l  501 (1435)
T KOG0370|consen  430 LADKVYFLP--------VTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDL  501 (1435)
T ss_pred             cceEEEEee--------cCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHH
Confidence            799999997        6789999999999999999998742111 1  12  347788999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceE
Q psy10619         90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRIL  169 (246)
Q Consensus        90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~l  169 (246)
                      +.+.|.+.+.+..++.  .+.+.+++.++++++|||+++..++.-||-|--.++|++||.+.....++      ....+|
T Consensus       502 fa~am~ei~e~ia~s~--a~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a------~s~Qil  573 (1435)
T KOG0370|consen  502 FARALNEINEKIAPSE--AVSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALA------LSPQIL  573 (1435)
T ss_pred             HHHHHHhhcccccchh--hHhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccc------cCceee
Confidence            9999999999999965  78999999999999999999999998899998899999999888777654      147899


Q ss_pred             EEecccCcceEEEEeeecceee----cchhhhhhh-------hcCCCCCCCCcc--cceeccccceeeeeeecCCCee
Q psy10619        170 VEKFIKNPRHIEIQGTTYKFLI----QTEKEFEYA-------KLLPPKPKLDET--KILHAPMPGLVKSVNCKVGDQI  234 (246)
Q Consensus       170 ve~~i~~g~e~~v~v~~d~~~v----~~~~~~~~~-------~~~~~~~~~~~~--~~l~sp~pg~i~~l~~~~G~~v  234 (246)
                      ||+-+.|..|+..++++|....    .....++..       ..+.|.+..+++  +++|..+-.+|+-+++---+.+
T Consensus       574 vekSlkGwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcni  651 (1435)
T KOG0370|consen  574 VEKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNI  651 (1435)
T ss_pred             ehhhhccccceEEEEEeccccchhhhcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccc
Confidence            9999998889999999987762    222223322       223466655544  7899999888888887544444

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A

Probab=99.27  E-value=4.2e-11  Score=94.92  Aligned_cols=103  Identities=24%  Similarity=0.370  Sum_probs=72.4

Q ss_pred             cCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-----CCceeEE-eCCHHHHHHHHHHHHHH
Q psy10619         85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-----GGKGMRI-ANNDQEAIEGFKLSSQE  158 (246)
Q Consensus        85 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-----g~~gv~~-v~~~~el~~~~~~~~~~  158 (246)
                      .+....+++|+.+|||+|++.  .+++.+++.++++.+|||+++|..+..     ...||.+ ++|.++++++++++...
T Consensus        10 L~e~e~~~lL~~yGI~~~~~~--~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~   87 (222)
T PF13549_consen   10 LTEAEAKELLAAYGIPVPPTR--LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRER   87 (222)
T ss_dssp             E-HHHHHHHHHTTT------E--EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCcCCCCee--EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHH
Confidence            467789999999999999975  799999999999999999999999765     2237777 78999999999999887


Q ss_pred             HHhhcCC---CceEEEeccc-CcceEEEEeeecce
Q psy10619        159 AAASFGD---DRILVEKFIK-NPRHIEIQGTTYKF  189 (246)
Q Consensus       159 ~~~~~~~---~~~lve~~i~-~g~e~~v~v~~d~~  189 (246)
                      .....+.   .+++||++++ +|.|+.+++..|..
T Consensus        88 ~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~  122 (222)
T PF13549_consen   88 VAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQ  122 (222)
T ss_dssp             HHHH-TT----EEEEEE------EEEEEEEEEETT
T ss_pred             HHHhCCCCccceEEEEEcccCCcEEEEEEEEECCC
Confidence            6653332   5799999999 89999999998863

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []

Probab=99.23  E-value=6.9e-12  Score=95.23  Aligned_cols=85  Identities=26%  Similarity=0.347  Sum_probs=44.2

Q ss_pred             hcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhc
Q psy10619         84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF  163 (246)
Q Consensus        84 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~  163 (246)
                      |.||.+++++|+++|||+|..+.  ....       ....+|+|+||.+|+||.|++++++.+++...+..         
T Consensus         1 ~~dK~~~~~~L~~~gi~~P~~~~--~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~---------   62 (161)
T PF02655_consen    1 CSDKLKTYKFLKELGIPVPTTLR--DSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK---------   62 (161)
T ss_dssp             -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred             CCCHHHHHHHHHccCCCCCCccc--cccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence            68999999999999999994321  1111       12378999999999999999999999887665432         


Q ss_pred             CCCceEEEecccCcceEEEEeeeccee
Q psy10619        164 GDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       164 ~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                         ..++|+||+ |.++|+.++.++..
T Consensus        63 ---~~i~Qe~i~-G~~~Sv~~l~~~~~   85 (161)
T PF02655_consen   63 ---LRIVQEFIE-GEPYSVSFLASGGG   85 (161)
T ss_dssp             -----EEEE----SEEEEEEEEE-SSS
T ss_pred             ---ceEEeeeeC-CEEeEEEEEEeCCc
Confidence               239999999 99999999987754

This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.

>COG3919 Predicted ATP-grasp enzyme [General function prediction only]

Probab=99.20  E-value=2.4e-10  Score=91.64  Aligned_cols=138  Identities=16%  Similarity=0.179  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         33 NVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      .+..+.+++.+++....+...++.++..   ...+.|.+. ..++-++...++..-+|-.++..+.++|+|.|.++  .+
T Consensus        59 aiafLrd~Aekhglkg~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v  135 (415)
T COG3919          59 AIAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LV  135 (415)
T ss_pred             HHHHHHHHHhhcCcCceEEEecCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Ee
Confidence            3578889999988775544333323322   222333222 23344899999999999999999999999999986  57


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCC-----ceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcce
Q psy10619        110 RDADHCVEIARDIGYPVMIKASAGGGG-----KGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH  179 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~-----~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e  179 (246)
                      +|..+.  ...++.||+|+||..|++-     .-.+.+.|.+|++.++..+..+    .+.++++||+||+||.|
T Consensus       136 ~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE  204 (415)
T COG3919         136 NSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGE  204 (415)
T ss_pred             cchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCc
Confidence            765544  4678899999999988742     2345678999999998887654    34688999999998765

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein

Probab=99.00  E-value=4.6e-09  Score=87.30  Aligned_cols=69  Identities=23%  Similarity=0.362  Sum_probs=53.5

Q ss_pred             CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh--CC-cEEEEeccCCCCceeEEeCCHH
Q psy10619         76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI--GY-PVMIKASAGGGGKGMRIANNDQ  146 (246)
Q Consensus        76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--~~-P~vvKp~~g~g~~gv~~v~~~~  146 (246)
                      ++.+...++.||..+..+|+++|||+|+++  .+.+.+...+.+.++  ++ |+|+||..|++|+|+.++++.+
T Consensus        27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~   98 (317)
T TIGR02291        27 NKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRK   98 (317)
T ss_pred             CCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEecc
Confidence            666777889999999999999999999965  445444333333333  56 6999999999999999986653

Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=98.96  E-value=2.7e-09  Score=89.06  Aligned_cols=102  Identities=22%  Similarity=0.374  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC-CcEEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHH--
Q psy10619         87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEA--  159 (246)
Q Consensus        87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~--  159 (246)
                      .+..+++|+++|||+|+++  +..+.+++..++.++| .|+|+|+.-..|+|    ||.++.|.+|+.++.++++...  
T Consensus         5 EYqaKelf~~~GiPvp~g~--v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q   82 (387)
T COG0045           5 EYQAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ   82 (387)
T ss_pred             HHHHHHHHHHcCCCCCCce--eeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence            5678999999999999986  7899999999999998 79999998777666    6899999999999999887611  


Q ss_pred             --HhhcCCCceEEEecccC-cceEEEEeeeccee
Q psy10619        160 --AASFGDDRILVEKFIKN-PRHIEIQGTTYKFL  190 (246)
Q Consensus       160 --~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~~  190 (246)
                        .....-..+|||++++. .+||.+.++.|+..
T Consensus        83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~  116 (387)
T COG0045          83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSS  116 (387)
T ss_pred             cCcCCceeeEEEEEecCCCccceEEEEEEEEcCC
Confidence              11111256899999984 45999999988764

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=98.93  E-value=1.2e-08  Score=88.02  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCC----ceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGG----KGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~----~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +.+..+++|+++|||+|++.  .+++.+++.++++++||| +|+|.....++    .||.+..|.+++.++++++.....
T Consensus         4 ~E~eak~lL~~yGIpvp~~~--~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~   81 (392)
T PRK14046          4 HEYQAKELLASFGVAVPRGA--LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKL   81 (392)
T ss_pred             cHHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchh
Confidence            35678999999999999976  789999999999999995 59998543333    378888999999999999886421


Q ss_pred             --hhc-----CCCceEEEecccCcceEEEEeeecce
Q psy10619        161 --ASF-----GDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 --~~~-----~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                        ...     .-..++||++++.++|+.+.+..|..
T Consensus        82 ~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~  117 (392)
T PRK14046         82 VTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRK  117 (392)
T ss_pred             hhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCC
Confidence              101     12469999999989999999998864

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []

Probab=98.91  E-value=2.2e-09  Score=83.86  Aligned_cols=101  Identities=24%  Similarity=0.369  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+..+++|+++|||+|++.  ++++++++.+++..++.+ +|+||.-..|+|    ||.+++|++|+.++..+++.....
T Consensus         4 EyqaK~ll~~~gi~vp~g~--~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~   81 (202)
T PF08442_consen    4 EYQAKELLRKYGIPVPRGV--VATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK   81 (202)
T ss_dssp             HHHHHHHHHCTT----SEE--EESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred             HHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence            5678999999999999976  789999999999999875 799998777666    688999999999999887653111


Q ss_pred             -------hcCCCceEEEecccCcceEEEEeeecce
Q psy10619        162 -------SFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       162 -------~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                             ...-..+|||++++..+|+.+.++.|+.
T Consensus        82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~  116 (202)
T PF08442_consen   82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE  116 (202)
T ss_dssp             -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred             eeecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence                   0001468999999988899999887754

They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....

>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]

Probab=98.90  E-value=2.3e-08  Score=81.21  Aligned_cols=151  Identities=19%  Similarity=0.265  Sum_probs=105.8

Q ss_pred             hccceeEEcCCCCcCCCCCCH--HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHH
Q psy10619         14 KLADEAVCIGPPVAAQSYINV--DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESK   91 (246)
Q Consensus        14 ~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~   91 (246)
                      ..||+.+.+.      +|.+.  +.+.+..++  -++|+.-++.+.....+.....+.-+|++|+. ..+++-.|....+
T Consensus        59 ~~a~e~i~v~------~f~dil~~~iqe~L~~--~n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR-~lLrwE~~~~~~~  129 (361)
T COG1759          59 PVADEVIIVD------KFSDILNEEIQEELRE--LNAIFIPHGSFVAYVGYDGIENEFEVPMFGNR-ELLRWEEDRKLEY  129 (361)
T ss_pred             chhheEEEec------hhHHHhhHHHHHHHHH--cCeEEecCCceEEEecchhhhhcccCcccccH-hHhhhhcchhhHH
Confidence            3466777664      23321  233444555  34666555554444444446677889999765 6777777999999


Q ss_pred             HHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh-hcCCCceEE
Q psy10619         92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA-SFGDDRILV  170 (246)
Q Consensus        92 ~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lv  170 (246)
                      .+|+++||+.|+    ...+++++       ..|+|||.....|++|.+++.|.+|+.+..+++.....- .-.-.++.|
T Consensus       130 ~lLekAgi~~P~----~~~~PeeI-------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~I  198 (361)
T COG1759         130 KLLEKAGLRIPK----KYKSPEEI-------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARI  198 (361)
T ss_pred             HHHHHcCCCCCc----ccCChHHc-------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhcee
Confidence            999999999999    45777764       569999999999999999999999999998887752110 001246889


Q ss_pred             EecccCcceEEEEee
Q psy10619        171 EKFIKNPRHIEIQGT  185 (246)
Q Consensus       171 e~~i~~g~e~~v~v~  185 (246)
                      |||+- |..+....+
T Consensus       199 eEYv~-G~~f~~~yF  212 (361)
T COG1759         199 EEYVV-GAPFYFHYF  212 (361)
T ss_pred             eEEee-ccceeeeee
Confidence            99998 655554443

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=98.81  E-value=4.1e-08  Score=84.97  Aligned_cols=101  Identities=14%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             cCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh---CCcEEEEeccCCCCc-----------eeEEeCCHHHHHH
Q psy10619         85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI---GYPVMIKASAGGGGK-----------GMRIANNDQEAIE  150 (246)
Q Consensus        85 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~---~~P~vvKp~~g~g~~-----------gv~~v~~~~el~~  150 (246)
                      ...+..+++|+++|||+|++.  .+.+.+++.++++++   ++|+|+|+.-..|||           ||.++++ +++.+
T Consensus        30 l~EyqaK~LL~~~GIpvp~~~--va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~  106 (422)
T PLN00124         30 IHEYQGAELMSKYGVNVPKGA--AASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE  106 (422)
T ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence            467788999999999999975  789999999999998   699999999544433           4666766 99999


Q ss_pred             HHHHHHHHHH--hhc-----CCCceEEEecccCcceEEEEeeecc
Q psy10619        151 GFKLSSQEAA--ASF-----GDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       151 ~~~~~~~~~~--~~~-----~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ++++++....  ...     .-..++|++.+..++|+.+.+..|.
T Consensus       107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr  151 (422)
T PLN00124        107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR  151 (422)
T ss_pred             HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence            9999876411  100     0135786666666899999999997

>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]

Probab=98.77  E-value=1.8e-08  Score=79.34  Aligned_cols=111  Identities=22%  Similarity=0.200  Sum_probs=82.7

Q ss_pred             CCCEEcc-ccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC
Q psy10619         45 RADAVHP-GYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG  123 (246)
Q Consensus        45 ~~d~v~~-~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~  123 (246)
                      ++|+.+. ..+.......+.+..++. +..+|+++++++.|.||+++.+.|+.+ +++|+++.            ....+
T Consensus        73 ~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e------------~~~~~  138 (307)
T COG1821          73 KADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE------------WAEEP  138 (307)
T ss_pred             cCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc------------cccCC
Confidence            5775432 232222334667777777 778899999999999999999999999 99999641            11234


Q ss_pred             CcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        124 YPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       124 ~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      --.|+||++|.||.|+.+..+..++                   .|+|+||+ |.++||. +.+|..
T Consensus       139 ~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIe-G~~lSVS-L~~GEk  184 (307)
T COG1821         139 KKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIE-GEHLSVS-LSVGEK  184 (307)
T ss_pred             ceEEecccccCCcceeeccCCCcch-------------------hhHHHhcC-CcceEEE-EecCCc
Confidence            4689999999999999877664442                   57899999 9999999 444433

>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]

Probab=98.72  E-value=5.1e-08  Score=79.58  Aligned_cols=127  Identities=19%  Similarity=0.224  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHhC--CCE-EccccccCCCCHHHHHHHHHcCCeEeCCCHH-HHHHhcCHHHHHHHHHHhCCCCCCCCcc
Q psy10619         32 INVDKIIDAIRQTR--ADA-VHPGYGFLSENASFVSRLKEEGVVFIGPTAE-CIRGMGDKLESKKLAKEAGVNIIPGFNG  107 (246)
Q Consensus        32 ~~~~~l~~~~~~~~--~d~-v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~-~~~~~~dK~~~~~~l~~~gip~p~~~~~  107 (246)
                      .+.++|++++.+..  +|+ +++..++-..     +.--+.+.++.|+++. ....+.||..+.+.+..+|+|.|+..  
T Consensus        68 ~de~~li~~~~~~~~dvD~~ii~~sg~e~l-----~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--  140 (389)
T COG2232          68 LDEQKLIEAAEDLAEDVDAPIIPFSGFEAL-----RTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--  140 (389)
T ss_pred             CCHHHHHHHHHhhhhhcceeeeeccccccc-----cccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--
Confidence            57789999988754  555 3444332111     1112456777888887 88889999999999999999999853  


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEEeccCCCCc-eeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeee
Q psy10619        108 IIRDADHCVEIARDIGYPVMIKASAGGGGK-GMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       108 ~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~-gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~  186 (246)
                      ..   +.    ...-.+++|+||.+|+||. ++...+  ++.               ...++++|+||+ |+.+|+.++.
T Consensus       141 ~~---e~----~~~gekt~IlKPv~GaGG~~el~~~~--Ee~---------------~~~~~i~Qefi~-G~p~Svs~is  195 (389)
T COG2232         141 KI---EP----LEEGEKTLILKPVSGAGGLVELVKFD--EED---------------PPPGFIFQEFIE-GRPVSVSFIS  195 (389)
T ss_pred             hh---hh----hhhcceeeEEeeccCCCceeeecccc--ccc---------------CCcceehhhhcC-CceeEEEEEe
Confidence            11   11    1222368999999999884 332111  111               025799999999 9999999999


Q ss_pred             ccee
Q psy10619        187 YKFL  190 (246)
Q Consensus       187 d~~~  190 (246)
                      ++..
T Consensus       196 ~g~~  199 (389)
T COG2232         196 NGSD  199 (389)
T ss_pred             cCcc
Confidence            8765

>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp

Probab=98.56  E-value=2.5e-07  Score=76.60  Aligned_cols=100  Identities=19%  Similarity=0.255  Sum_probs=68.4

Q ss_pred             CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcc---------ccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCH
Q psy10619         76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNG---------IIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANND  145 (246)
Q Consensus        76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~---------~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~  145 (246)
                      ++.+...++.||..+++++.++|||+|+.+..         ...+.+++.++++.. ..++|+||..|++|+|+.+++..
T Consensus        16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~   95 (285)
T PF14397_consen   16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR   95 (285)
T ss_pred             CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence            66788889999999999999999999993210         124567777777664 57999999999999999987554


Q ss_pred             HH--HHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619        146 QE--AIEGFKLSSQEAAASFGDDRILVEKFIKN  176 (246)
Q Consensus       146 ~e--l~~~~~~~~~~~~~~~~~~~~lve~~i~~  176 (246)
                      +.  +............. ....++|||++|..
T Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~liqe~i~q  127 (285)
T PF14397_consen   96 DGSEINRDISALYAGLES-LGGKDYLIQERIEQ  127 (285)
T ss_pred             cCcccccchhHHHHHHHh-cCCccEEEEecccC
Confidence            31  11111111111111 11128999999973

>PLN02235 ATP citrate (pro-S)-lyase

Probab=98.55  E-value=5e-07  Score=77.49  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHh-----CCCCCCCCcccc-CCHHHHHHHHHH---hCCc-EEEEeccCCCCc----eeEEeCCHHHHHHH
Q psy10619         86 DKLESKKLAKEA-----GVNIIPGFNGII-RDADHCVEIARD---IGYP-VMIKASAGGGGK----GMRIANNDQEAIEG  151 (246)
Q Consensus        86 dK~~~~~~l~~~-----gip~p~~~~~~~-~~~~~~~~~~~~---~~~P-~vvKp~~g~g~~----gv~~v~~~~el~~~  151 (246)
                      ..+..+++|+++     |||+|.+.  ++ ++.+++.+++++   ++.| +||||.-..|+|    ||.+++|++|+.++
T Consensus         7 ~EyqaK~ll~~~~~~~~gipvP~~~--v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~   84 (423)
T PLN02235          7 REYDSKRLLKEHLKRLAGIDLPIRS--AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATF   84 (423)
T ss_pred             cHHHHHHHHHHhhcccCCCCCCCCe--eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHH
Confidence            356678889998     99999975  45 899999998888   7765 699999877777    58889999999999


Q ss_pred             HHHHHHHHHhhc----CCCceEEEecccCcceEEEEeeeccee
Q psy10619        152 FKLSSQEAAASF----GDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       152 ~~~~~~~~~~~~----~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .++++.......    .-..+|||++++.-+||.+.++.|+..
T Consensus        85 a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~  127 (423)
T PLN02235         85 VKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLG  127 (423)
T ss_pred             HHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCC
Confidence            999876321100    114689999998889999999887654

>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6

Probab=98.28  E-value=2.8e-06  Score=64.82  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             CCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCH-HHHHHHHHHHHHHHHhhcCCCceEEEecccC--c
Q psy10619        101 IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND-QEAIEGFKLSSQEAAASFGDDRILVEKFIKN--P  177 (246)
Q Consensus       101 ~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g  177 (246)
                      +|+++  +.++.+++.++.++.+. +|+||..|.||+||+++... ..+...++.+.     ..+...+++|+|++.  .
T Consensus        12 ~P~T~--vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~-----~~~~~~~mvQ~flp~i~~   83 (173)
T PF02955_consen   12 IPPTL--VSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLT-----KNGERPVMVQPFLPEIKE   83 (173)
T ss_dssp             S--EE--EES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHT-----TTTTS-EEEEE--GGGGG
T ss_pred             CcCEE--EECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHH-----hcCCccEEEEeccccccC
Confidence            46754  66789999999999988 99999999999999998653 33444444332     122457999999985  2


Q ss_pred             ceEEEEeeec
Q psy10619        178 RHIEIQGTTY  187 (246)
Q Consensus       178 ~e~~v~v~~d  187 (246)
                      -|.++-++..
T Consensus        84 GDkRii~~nG   93 (173)
T PF02955_consen   84 GDKRIILFNG   93 (173)
T ss_dssp             -EEEEEEETT
T ss_pred             CCEEEEEECC
Confidence            2777776644

3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=98.27  E-value=8.3e-07  Score=65.46  Aligned_cols=33  Identities=30%  Similarity=0.489  Sum_probs=31.4

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...++|||+|++.++.+++||.|++||+||+||
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE  102 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE  102 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence            356999999999999999999999999999999

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=98.02  E-value=8.4e-06  Score=48.90  Aligned_cols=32  Identities=38%  Similarity=0.589  Sum_probs=29.9

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.+|.+|.|.++.++.||.|++||+|++|+-
T Consensus         4 ~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~   35 (50)
T PF13533_consen    4 TIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS   35 (50)
T ss_pred             EEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence            47899999999999999999999999999974

>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase

Probab=98.00  E-value=2e-05  Score=65.35  Aligned_cols=115  Identities=17%  Similarity=0.268  Sum_probs=76.0

Q ss_pred             HHHHHHH-cCCeEeCCCHHHHHHhcCHHHHHHHHHHh-------CCCCCCCCccccC-CHHHHHHHH--HHhCCcEEEEe
Q psy10619         62 FVSRLKE-EGVVFIGPTAECIRGMGDKLESKKLAKEA-------GVNIIPGFNGIIR-DADHCVEIA--RDIGYPVMIKA  130 (246)
Q Consensus        62 ~~~~~~~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp  130 (246)
                      +.+..++ -.+.++ .+.++++.+.|+..+.+++.++       .+.+|++.  .+. +.+++.+..  +.+.||+|+||
T Consensus        69 l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agL~fPlI~KP  145 (307)
T PF05770_consen   69 LEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFV--VINSDAESLPELLKEAGLKFPLICKP  145 (307)
T ss_dssp             HHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EE--EESSSHCCHHHHHHCTTS-SSEEEEE
T ss_pred             HHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceE--EEcCCHHHHHHHHHHCCCcccEEeee
Confidence            3344444 356666 8889999999999999998876       66788854  444 444454444  35789999999


Q ss_pred             ccCCC---CceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeecceeec
Q psy10619        131 SAGGG---GKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYKFLIQ  192 (246)
Q Consensus       131 ~~g~g---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~~v~  192 (246)
                      ....|   |-.+.++.+.+.|.+.             ..++++||||+- |.-|-|-++|+...+.
T Consensus       146 lvA~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~v~~v  198 (307)
T PF05770_consen  146 LVACGSADSHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDKVFVV  198 (307)
T ss_dssp             SB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTEEEEE
T ss_pred             hhhcCCccceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCEEEEE
Confidence            87654   4578999999988542             367999999976 6788899998877643

Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.

>PRK06748 hypothetical protein; Validated

Probab=97.95  E-value=1e-05  Score=53.58  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.|||||.+.+..++.||.|++||+|++||-
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            58899999999999999999999999999983

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=97.91  E-value=1.3e-05  Score=70.19  Aligned_cols=39  Identities=38%  Similarity=0.505  Sum_probs=34.9

Q ss_pred             CCCCCcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        206 KPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       206 ~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      +......+.+.+||||+|.++.|+.|+.|.+||+|+|||
T Consensus       569 ~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE  607 (645)
T COG4770         569 KVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE  607 (645)
T ss_pred             cccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence            334455688999999999999999999999999999998

>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp

Probab=97.85  E-value=0.00034  Score=57.35  Aligned_cols=109  Identities=19%  Similarity=0.216  Sum_probs=77.3

Q ss_pred             HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhC-CC--CCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEe
Q psy10619         66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAG-VN--IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA  142 (246)
Q Consensus        66 ~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~g-ip--~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v  142 (246)
                      -++.|++++.+.      ..||+.+.++|.+.. +.  .|++.  .+.+.+++.+++...+ -++|||..|+.|+||.++
T Consensus         4 k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~--~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri   74 (262)
T PF14398_consen    4 KKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETE--LLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI   74 (262)
T ss_pred             HhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCce--EcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence            356789998653      589999999999864 33  46743  6788899988888765 699999999999998654


Q ss_pred             C----------------------CHHHHHHHHHHHHHHHHhhcCCCceEEEecccC----cc--eEEEEeeeccee
Q psy10619        143 N----------------------NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN----PR--HIEIQGTTYKFL  190 (246)
Q Consensus       143 ~----------------------~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~----g~--e~~v~v~~d~~~  190 (246)
                      +                      +.+++...+...       .+...+|||+.|+-    |+  +++|.+-.++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G  143 (262)
T PF14398_consen   75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSG  143 (262)
T ss_pred             EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCC
Confidence            2                      234555555443       23568999999953    44  566666655443

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.81  E-value=2.7e-05  Score=50.47  Aligned_cols=31  Identities=29%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .+++|++|.+.++.++.||.|++||+|+++|
T Consensus         4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve   34 (71)
T PRK05889          4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLE   34 (71)
T ss_pred             EEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            4899999999999999999999999999987

>KOG0238|consensus

Probab=97.56  E-value=9.5e-05  Score=64.12  Aligned_cols=35  Identities=46%  Similarity=0.775  Sum_probs=32.0

Q ss_pred             CcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        210 DETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       210 ~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .....+.+||||.|.++.++.||.|++||.++|||
T Consensus       599 ~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~  633 (670)
T KOG0238|consen  599 DGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLI  633 (670)
T ss_pred             CCCCceecCCCCeeeeeeccchhhhcccCceEEEE
Confidence            34466899999999999999999999999999997

>KOG0369|consensus

Probab=97.50  E-value=0.00021  Score=64.05  Aligned_cols=42  Identities=33%  Similarity=0.532  Sum_probs=36.6

Q ss_pred             CCCCCCCCcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        203 LPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       203 ~~~~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..|+..+...+.+.+||||.+..+.++.|+.|+|||+|+||-
T Consensus      1097 ~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1097 TRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred             ccccCCCCCcccccCCCCCceEEEEEecCceecCCCceEeee
Confidence            345556667788999999999999999999999999999983

>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2

Probab=97.49  E-value=0.0019  Score=56.46  Aligned_cols=134  Identities=14%  Similarity=0.185  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHhCCCEEccccc------------c------------------CCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYG------------F------------------LSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~------------~------------------~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ...+.+.+..+++++++++....            .                  ..+...+.++....-+.++|+  -..
T Consensus       200 ~Ef~~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vgs--frs  277 (445)
T PF14403_consen  200 SEFEVFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVGS--FRS  277 (445)
T ss_pred             chHHHHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEecc--hhh
Confidence            34577788888889988874421            0                  011112333444445565543  344


Q ss_pred             HHhcCHHHHHHHHHHhCCC------------CCCCCccccCC--------HHHHHHHHHHhCCcEEEEeccCCCCceeEE
Q psy10619         82 RGMGDKLESKKLAKEAGVN------------IIPGFNGIIRD--------ADHCVEIARDIGYPVMIKASAGGGGKGMRI  141 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip------------~p~~~~~~~~~--------~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~  141 (246)
                      .++.||..+.-+-....-.            ..|+ ++.++.        ..++.+.+....--+|+||.++.||+||++
T Consensus       278 ~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~-T~~l~~~~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~  356 (445)
T PF14403_consen  278 QLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPW-TRLLTAGRTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYI  356 (445)
T ss_pred             hhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCc-eEEEcCccccccccchhHHHHHHhchhcEEeccccccCCCCeEE
Confidence            5566777655443322211            1122 123333        345555555555679999999999999988


Q ss_pred             e--CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619        142 A--NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN  176 (246)
Q Consensus       142 v--~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~  176 (246)
                      -  .++++.+++++++.        .+++|+|||+.-
T Consensus       357 G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~  385 (445)
T PF14403_consen  357 GWETSPEEWEAALEEAA--------REPYILQEYVRP  385 (445)
T ss_pred             CCcCCHHHHHHHHHHHh--------cCCcEEEEEecC
Confidence            4  57888888888865        368999999984

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.46  E-value=0.00018  Score=46.46  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=25.3

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .+.+|++|.+.+..++.||.|++||+|+++|
T Consensus         3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve   33 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILE   33 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            3678888888888888888888888888876

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.44  E-value=0.00025  Score=51.32  Aligned_cols=33  Identities=36%  Similarity=0.614  Sum_probs=31.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++||+|.+.++.++.||.|++||.|++||-
T Consensus        62 ~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEa   94 (130)
T PRK06549         62 DAMPSPMPGTILKVLVAVGDQVTENQPLLILEA   94 (130)
T ss_pred             cEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            569999999999999999999999999999983

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.43  E-value=0.00025  Score=52.97  Aligned_cols=34  Identities=29%  Similarity=0.570  Sum_probs=31.7

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ...+++|++|.+.++.++.||.|++||.|++||-
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEa  117 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEA  117 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEee
Confidence            3569999999999999999999999999999984

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=97.40  E-value=0.00024  Score=48.86  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHH
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRG   83 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~   83 (246)
                      +..+.+.++++|+++++|.++++.    |.+   .+.+.|++.|++++||+.++.++
T Consensus        47 ~~~d~~~l~~~a~~~~idlvvvGP----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L   99 (100)
T PF02844_consen   47 DITDPEELADFAKENKIDLVVVGP----EAPLVAGLADALRAAGIPVFGPSKEAARL   99 (100)
T ss_dssp             -TT-HHHHHHHHHHTTESEEEESS----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCEEEECC----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence            357889999999999999999996    333   46889999999999999888765

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=97.31  E-value=0.00055  Score=62.12  Aligned_cols=33  Identities=24%  Similarity=0.462  Sum_probs=31.5

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...+.+||||.+.++.++.||.|++||+|++||
T Consensus       517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE  549 (582)
T TIGR01108       517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE  549 (582)
T ss_pred             CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence            457999999999999999999999999999998

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=97.30  E-value=0.00056  Score=61.99  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=31.2

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .+.+.+||||.+.++.++.||.|++||+|++||
T Consensus       525 ~~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE  557 (596)
T PRK14042        525 PGDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE  557 (596)
T ss_pred             CCeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence            356999999999999999999999999999998

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=97.05  E-value=0.00087  Score=50.37  Aligned_cols=33  Identities=30%  Similarity=0.595  Sum_probs=30.0

Q ss_pred             cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..++|||+|.+.+       ..++.||.|++||+||+||-
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa  120 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA  120 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence            4699999999997       48999999999999999984

The gene name is accB or fabE.

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=97.03  E-value=0.00071  Score=44.13  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=27.9

Q ss_pred             ceeccccceeee------eeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKS------VNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~------l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+++|++|....      ..++.||.|++||+|+.||-
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet   39 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIET   39 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEES
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEc
Confidence            367888887666      99999999999999999983

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria

Probab=97.02  E-value=0.0066  Score=50.52  Aligned_cols=82  Identities=16%  Similarity=0.326  Sum_probs=64.7

Q ss_pred             CCCCCCccccCCHHHHHHHHHHh--CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc
Q psy10619        100 NIIPGFNGIIRDADHCVEIARDI--GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP  177 (246)
Q Consensus       100 p~p~~~~~~~~~~~~~~~~~~~~--~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g  177 (246)
                      -+-+++  .+.+.+++..+...+  +.|+=+||..+.||+|..++.+.++|+.++..+-.....   ..++++|+-+..-
T Consensus       113 ~vL~G~--tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~  187 (355)
T PF11379_consen  113 AVLPGY--TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEV  187 (355)
T ss_pred             hccCCc--cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCC
Confidence            344455  478899998887765  679999999999999999999999999999876543322   3678999999866


Q ss_pred             ceEEEEeee
Q psy10619        178 RHIEIQGTT  186 (246)
Q Consensus       178 ~e~~v~v~~  186 (246)
                      .-|||+-+.
T Consensus       188 ~T~SVGqv~  196 (355)
T PF11379_consen  188 VTYSVGQVR  196 (355)
T ss_pred             ceeeEEEEE
Confidence            678887554

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=96.97  E-value=0.0013  Score=60.41  Aligned_cols=32  Identities=41%  Similarity=0.703  Sum_probs=30.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .-+-+||||.+.++.|+.||.|++||.|++||
T Consensus      1080 ~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038        1080 GHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred             cccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence            56999999999999999999999999999998

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=96.95  E-value=0.002  Score=58.68  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ...+.+||+|.+.++.++.||.|++||+|++||-
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEa  557 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEA  557 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEec
Confidence            3479999999999999999999999999999983

>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp

Probab=96.93  E-value=0.0084  Score=48.42  Aligned_cols=105  Identities=15%  Similarity=0.202  Sum_probs=65.7

Q ss_pred             HHHHhcCHHHHHHHHHHhC--CCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHH---HHHHHHH
Q psy10619         80 CIRGMGDKLESKKLAKEAG--VNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQE---AIEGFKL  154 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~g--ip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~e---l~~~~~~  154 (246)
                      ....+.||...|+++++.+  ...||.+ .+.++.+++.  ...+.-++||||..|+|+..+....+.-+   +...+..
T Consensus        14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~   90 (239)
T PF14305_consen   14 LFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNR   90 (239)
T ss_pred             cceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHH
Confidence            3456899999999999986  2334532 3566666653  34566789999999999888877544333   3322322


Q ss_pred             HHHHHHh------hcC--CCceEEEecccC--c---ceEEEEeeec
Q psy10619        155 SSQEAAA------SFG--DDRILVEKFIKN--P---RHIEIQGTTY  187 (246)
Q Consensus       155 ~~~~~~~------~~~--~~~~lve~~i~~--g---~e~~v~v~~d  187 (246)
                      .+.....      .+.  ...++||+++..  +   .+|.+-++..
T Consensus        91 wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G  136 (239)
T PF14305_consen   91 WLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNG  136 (239)
T ss_pred             HhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECC
Confidence            2211000      010  257899999965  3   3677776654

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=96.90  E-value=0.0015  Score=52.53  Aligned_cols=33  Identities=33%  Similarity=0.620  Sum_probs=30.6

Q ss_pred             cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+||+|.+.+       +.++.||.|++||+|++||-
T Consensus       198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEA  237 (274)
T PLN02983        198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEA  237 (274)
T ss_pred             CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEe
Confidence            5699999999999       49999999999999999984

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.86  E-value=0.0017  Score=41.79  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.++..|.+.++.++.||.|..||+|+.||
T Consensus        39 ~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         39 IPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             ceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            35899999999999999999999999999997

>PRK12999 pyruvate carboxylase; Reviewed

Probab=96.84  E-value=0.0023  Score=62.66  Aligned_cols=35  Identities=37%  Similarity=0.581  Sum_probs=32.1

Q ss_pred             cccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ....+.+||||.+.++.++.||.|++||+|++||-
T Consensus      1075 ~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999       1075 NPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred             CCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence            34569999999999999999999999999999983

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.76  E-value=0.002  Score=40.71  Aligned_cols=31  Identities=45%  Similarity=0.682  Sum_probs=27.7

Q ss_pred             eeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        215 LHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ++||+.|.+.+..++.|+.|++||.|+.+|.
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~   32 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA   32 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            6789999999999999999999999998873

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK07051 hypothetical protein; Validated

Probab=96.75  E-value=0.0018  Score=42.93  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=30.1

Q ss_pred             cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|++|.+.+       +.++.||.|++||+++.+|-
T Consensus         4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~   43 (80)
T PRK07051          4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEV   43 (80)
T ss_pred             cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEE
Confidence            3589999999999       99999999999999999984

>KOG2799|consensus

Probab=96.74  E-value=0.01  Score=49.72  Aligned_cols=74  Identities=24%  Similarity=0.350  Sum_probs=61.1

Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC-cEEEEeccCCCCc-----------eeEEeCCHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKASAGGGGK-----------GMRIANNDQEAI  149 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~g~g~~-----------gv~~v~~~~el~  149 (246)
                      .+....+...++|+++|+.+|+++  +..|++++..++++++. -+|||...-.||+           ||.++.+++|.+
T Consensus        22 ~L~~hey~~~~ll~~~Gv~vp~g~--vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak   99 (434)
T KOG2799|consen   22 SLGIHEYRSAALLRKYGINVPLGY--VAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAK   99 (434)
T ss_pred             hhhHHHHHHHHHHHHcCCCCCCCc--ccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHH
Confidence            344456677899999999999987  78999999999999974 5999998765554           688999999998


Q ss_pred             HHHHHHHH
Q psy10619        150 EGFKLSSQ  157 (246)
Q Consensus       150 ~~~~~~~~  157 (246)
                      ....++..
T Consensus       100 ~va~qmiG  107 (434)
T KOG2799|consen  100 AVASQMIG  107 (434)
T ss_pred             HHHHHhhc
Confidence            88877764

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.64  E-value=0.002  Score=48.42  Aligned_cols=33  Identities=33%  Similarity=0.662  Sum_probs=30.2

Q ss_pred             cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..++|||.|++..       ..++.||.|++||+||+||-
T Consensus        80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEa  119 (155)
T PRK06302         80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEA  119 (155)
T ss_pred             CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEe
Confidence            4699999999987       67999999999999999984

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=96.53  E-value=0.005  Score=60.20  Aligned_cols=33  Identities=30%  Similarity=0.581  Sum_probs=31.2

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...+.+||+|.+.++.++.||.|++||+|++||
T Consensus      1074 ~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235      1074 PAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred             CceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence            356999999999999999999999999999998

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.51  E-value=0.0042  Score=40.07  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+++|..|.+.++.++.||.|+.||.|++|+
T Consensus        40 ~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         40 IPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             eEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            45899999999999999999999999999985

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=96.48  E-value=0.0031  Score=46.50  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=31.8

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.+.||..|.+.++.++.||.|..||+|++||+
T Consensus       107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~  140 (140)
T COG0511         107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP  140 (140)
T ss_pred             cceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence            4679999999999999999999999999999985

>PRK07051 hypothetical protein; Validated

Probab=96.34  E-value=0.0055  Score=40.54  Aligned_cols=31  Identities=23%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .+++|..|.+.++.++.|+.|+.||.|+.||
T Consensus        49 ~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         49 EVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             EEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            5899999999999999999999999999987

>PRK06748 hypothetical protein; Validated

Probab=96.30  E-value=0.0065  Score=40.31  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+|..|.+.++.++.||.|..||.|++||-
T Consensus        43 ~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         43 VEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             EEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            358999999999999999999999999999973

>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []

Probab=96.13  E-value=0.0049  Score=43.64  Aligned_cols=84  Identities=15%  Similarity=0.227  Sum_probs=48.3

Q ss_pred             hccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHH
Q psy10619         14 KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL   93 (246)
Q Consensus        14 ~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~   93 (246)
                      .++|+++.++...    ..-.+.+.+..++  -++|+.-++.+.+....-..-.+..+|++|+. ..++.-.|...-+.+
T Consensus        39 ~~iDe~i~~d~f~----di~~~~~q~~L~~--~N~I~VPhgSfv~Y~G~d~ie~~~~vP~FGNR-~lLrwEseR~~~~~l  111 (124)
T PF06849_consen   39 PFIDEVIVLDSFS----DILSEEVQEKLRE--MNAIFVPHGSFVAYVGYDRIENEFKVPIFGNR-NLLRWESERDKERNL  111 (124)
T ss_dssp             TT-SEEEEESSCG----HCCSHHHHHHHHH--TTEEE--BTTHHHHH-HHHHHHT-SS-EES-C-CGGHCCCSHHHHHHH
T ss_pred             CcCcEEEEeCCHH----HHHhHHHHHHHHH--CCeEEecCCCeeEeecHHHHhhcCCCCeecCh-HHHHhhhhhhhHHHH
Confidence            3789999885211    1112456666666  34777666655443333333344999999876 566776788888999


Q ss_pred             HHHhCCCCCCC
Q psy10619         94 AKEAGVNIIPG  104 (246)
Q Consensus        94 l~~~gip~p~~  104 (246)
                      |+++|||.|+.
T Consensus       112 L~~AgI~~P~~  122 (124)
T PF06849_consen  112 LEKAGIPMPRK  122 (124)
T ss_dssp             HHHTT-BB--B
T ss_pred             HHHcCCCCCcc
Confidence            99999999984

Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=96.00  E-value=0.016  Score=52.92  Aligned_cols=35  Identities=31%  Similarity=0.563  Sum_probs=32.1

Q ss_pred             cccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ....+.+||+|.+.++.++.||.|++||+|++||-
T Consensus       521 ~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~iea  555 (592)
T PRK09282        521 APGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEA  555 (592)
T ss_pred             CCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEec
Confidence            34679999999999999999999999999999983

>KOG3895|consensus

Probab=95.98  E-value=0.024  Score=47.41  Aligned_cols=138  Identities=19%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             HHHhCCCEEccccccC--CC--C-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHH-HHH---HHHHhC---CCCCCCCccc
Q psy10619         41 IRQTRADAVHPGYGFL--SE--N-ASFVSRLKEEGVVFIGPTAECIRGMGDKLE-SKK---LAKEAG---VNIIPGFNGI  108 (246)
Q Consensus        41 ~~~~~~d~v~~~~~~~--~e--~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~-~~~---~l~~~g---ip~p~~~~~~  108 (246)
                      .|.+.+|+|+..-+.+  ..  + ..+...+.-.|+|.+ ++...+-.+-||.. +++   +.+..|   +|..+..+  
T Consensus       151 ~RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--  227 (488)
T KOG3895|consen  151 VRSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--  227 (488)
T ss_pred             eeeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee--
Confidence            4667788888774321  22  2 245566788999988 77777666666654 333   334455   55544221  


Q ss_pred             cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        109 IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       109 ~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      .-+-   ......-.||+|||--.+..|.|-.+|+|.+|+.+.-.-+ +..     ....-+|.||....++.|+=++..
T Consensus       228 yPnH---K~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svv-al~-----~Tyat~epFiDaKYDiriQKIG~n  298 (488)
T KOG3895|consen  228 YPNH---KEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVV-ALT-----KTYATAEPFIDAKYDIRIQKIGHN  298 (488)
T ss_pred             cCCc---hhhccCCCCcEEEEecccccccceeeecchhhhHhHHHHH-HHH-----hhhhhccccccccceeehhhhhhh
Confidence            1121   2223344699999999999999999999998876543222 111     244668999986667888777655


Q ss_pred             ee
Q psy10619        189 FL  190 (246)
Q Consensus       189 ~~  190 (246)
                      +.
T Consensus       299 YK  300 (488)
T KOG3895|consen  299 YK  300 (488)
T ss_pred             HH
Confidence            44

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=95.65  E-value=0.016  Score=37.69  Aligned_cols=31  Identities=29%  Similarity=0.581  Sum_probs=29.3

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ..+.||..|.+.++.++.||.|..||.|++|
T Consensus        44 ~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen   44 MEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             eEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            4699999999999999999999999999987

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>TIGR02712 urea_carbox urea carboxylase

Probab=95.55  E-value=0.014  Score=57.61  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...+.|||+|.++++.++.||.|++||+|++||
T Consensus      1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712      1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred             CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence            357999999999999999999999999999998

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments)

Probab=95.22  E-value=0.13  Score=39.71  Aligned_cols=106  Identities=19%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             CHHHHHHhcCHHHH----HHHHHHh---CCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHH
Q psy10619         77 TAECIRGMGDKLES----KKLAKEA---GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI  149 (246)
Q Consensus        77 ~~~~~~~~~dK~~~----~~~l~~~---gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~  149 (246)
                      +..++-.+.||...    .++.+++   .+|..+..  ...+..+.   .....||+|||--...+|.|-.+++|..++.
T Consensus         2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~q   76 (203)
T PF02750_consen    2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQ   76 (203)
T ss_dssp             -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHHH
T ss_pred             cccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHHH
Confidence            44566667777542    2233344   45554422  13333332   2335799999999999999999999999887


Q ss_pred             HHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecceeecc
Q psy10619        150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQT  193 (246)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~~  193 (246)
                      +...-+...      +.-+.+|+||.-..++.++-+++.....+
T Consensus        77 Di~sll~~~------~~Y~T~EPfId~kyDirvqkIG~~ykA~~  114 (203)
T PF02750_consen   77 DIASLLAIT------KDYATTEPFIDAKYDIRVQKIGNNYKAYM  114 (203)
T ss_dssp             HHHHHHHHH------TS-EEEEE---EEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHhc------CceEEeeccccceeEEEEEEEcCeEEEEE
Confidence            765544321      35678999998677889988887766443

The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.16  E-value=0.029  Score=35.20  Aligned_cols=31  Identities=42%  Similarity=0.648  Sum_probs=28.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ..+++|..|.+..+.++.|+.|..|+.|+.|
T Consensus        37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850          37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            4599999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=95.06  E-value=0.024  Score=48.09  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++..|.+.++.++.||.|++||+|+.|+-
T Consensus        43 ~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~   75 (334)
T TIGR00998        43 LQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP   75 (334)
T ss_pred             EEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            458999999999999999999999999999974

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed

Probab=94.74  E-value=0.03  Score=46.61  Aligned_cols=43  Identities=26%  Similarity=0.471  Sum_probs=23.7

Q ss_pred             cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619        125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN  176 (246)
Q Consensus       125 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~  176 (246)
                      -+|+||..++.|+|+.++++.+++.+.         .......++||+||+.
T Consensus        67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~  109 (292)
T PF03133_consen   67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIEN  109 (292)
T ss_dssp             -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SS
T ss_pred             EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCC
Confidence            489999999999999999999888654         0122578999999974

This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=94.62  E-value=0.037  Score=47.28  Aligned_cols=33  Identities=9%  Similarity=0.163  Sum_probs=30.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++++|.|.++.++.||.|++||.|+.|+.
T Consensus        49 v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~   81 (346)
T PRK10476         49 VHVASEVGGRIVELAVTENQAVKKGDLLFRIDP   81 (346)
T ss_pred             EEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            458899999999999999999999999999974

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=94.58  E-value=0.039  Score=46.43  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++..|.+.++.++.||.|++||.|+.|+-
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~   80 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ   80 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence            348889999999999999999999999999973

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=94.43  E-value=0.049  Score=35.50  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEE
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ++....+..+.||.|++||+|+.|
T Consensus        30 ~~vGi~l~~k~Gd~V~~Gd~l~~i   53 (75)
T PF07831_consen   30 PAVGIELHKKVGDRVEKGDPLATI   53 (75)
T ss_dssp             TT-EEEESS-TTSEEBTTSEEEEE
T ss_pred             cCcCeEecCcCcCEECCCCeEEEE
Confidence            466778999999999999999986

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=94.20  E-value=0.85  Score=41.86  Aligned_cols=140  Identities=17%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             HHHHH-HHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHH--------------------------hcCH
Q psy10619         35 DKIID-AIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRG--------------------------MGDK   87 (246)
Q Consensus        35 ~~l~~-~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~--------------------------~~dK   87 (246)
                      +.++. ...+.+...++..++. .......+.+++.|++++..+..+...                          ..++
T Consensus       395 ~~~~~~~~~~~~k~~v~~~~gg-~~~~~~~~~l~~~gip~~~~pe~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (598)
T COG1042         395 EAIIRATAKKRGKPVVVSSMGG-ESSEKARRLLEEAGIPTYPTPERAVKALSALARYRRWLKKLRETPVFEGGGGTTLDE  473 (598)
T ss_pred             HHHHHhhhhhCCCceEEEecCC-cchHHHHHHhhhcCCCCccCchHHHHHHHHHHHHHHHHHhhccCcccccCCccccCc
Confidence            44444 3445555666655544 222344567889999988655554422                          1367


Q ss_pred             HHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-----CCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619         88 LESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-----GGKGMRIANNDQEAIEGFKLSSQEAAAS  162 (246)
Q Consensus        88 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-----g~~gv~~v~~~~el~~~~~~~~~~~~~~  162 (246)
                      ...+++++.+|+++|++   ...+.+++..+++.++     |-.+..     .-.|+.+-.+..++.+++..+...  . 
T Consensus       474 ~e~~~~l~~~gi~~~~~---~~~~~~ea~~~a~~~~-----Kl~s~~i~hksev~gv~l~~~~~~v~~a~~~~~~~--p-  542 (598)
T COG1042         474 PEAKELLEAYGIPVPAT---IASTLDEAVHIAESIG-----KLRSPDIDHKSEVGGVMLNRTADAVEKAADDILAR--P-  542 (598)
T ss_pred             hhhhhHHHHhcCccccc---ccCCHHHHHHHHHHhh-----hccCCccchhhhccceeecCcHHHHHHHHHhHhcc--c-
Confidence            77899999999999995   5789999999888887     555433     112444447788999998888765  2 


Q ss_pred             cCCCceEEEecccCcceEEEEeeecc
Q psy10619        163 FGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       163 ~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ..-..++||++..  .|..+.+..|.
T Consensus       543 a~i~g~lvq~m~~--~E~~vgv~~dp  566 (598)
T COG1042         543 ARIAGVLVQTMAK--LELIVGVKNDP  566 (598)
T ss_pred             chhhhhhhHhhhh--ccceeeccCCC
Confidence            2236789999988  78888877664

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.04  E-value=0.077  Score=38.48  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ...+.+|..|.+.++.++.||.|..||.|+.|
T Consensus        98 e~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         98 ENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             cEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            35699999999999999999999999999886

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=93.70  E-value=0.072  Score=45.97  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .-.+.+++.|.+.++.++.||.|++||.|+.|+
T Consensus        61 ~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld   93 (370)
T PRK11578         61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID   93 (370)
T ss_pred             EEEEecccceEEEEEEcCCCCEEcCCCEEEEEC
Confidence            346899999999999999999999999999986

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=93.69  E-value=0.098  Score=39.31  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.++..|.+.++.++.|+.|.-||.|+.||
T Consensus       125 ~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       125 NEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             eEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            45899999999999999999999999999986

The gene name is accB or fabE.

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=93.56  E-value=0.08  Score=46.05  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus        62 v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~   94 (390)
T PRK15136         62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP   94 (390)
T ss_pred             EEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence            358899999999999999999999999999973

>KOG1447|consensus

Probab=93.51  E-value=0.68  Score=37.63  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCc-----------eeEEeCCHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGK-----------GMRIANNDQEAIEGFK  153 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~-----------gv~~v~~~~el~~~~~  153 (246)
                      ..+..+++|.++|+.+-+++  +.++..++.+.+.+++-| .|+|..--.||+           ||.+-.+++..-+..+
T Consensus        23 qEfQSK~~l~k~Gv~vQ~F~--Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~  100 (412)
T KOG1447|consen   23 QEFQSKEILSKNGVRVQRFF--VADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAK  100 (412)
T ss_pred             HHhhhHHHHHhcCeeEEEEE--EecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHH
Confidence            35567889999999998864  677888888888888765 899987655554           3566678888888888


Q ss_pred             HHHHHHHhhc--CC-----CceEEEecccCcceEEEEeeecce
Q psy10619        154 LSSQEAAASF--GD-----DRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       154 ~~~~~~~~~~--~~-----~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ++.......-  +.     ..++|-+-+...+|-.+.++.|+.
T Consensus       101 qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe  143 (412)
T KOG1447|consen  101 QMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRE  143 (412)
T ss_pred             HHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccc
Confidence            8766432211  11     356777777777887777776654

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=93.49  E-value=0.084  Score=44.78  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.++++|.|.++.++.||.|++||+|..|+-
T Consensus        45 ~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~   76 (331)
T PRK03598         45 NLGFRVGGRLASLAVDEGDAVKAGQVLGELDA   76 (331)
T ss_pred             EeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence            58999999999999999999999999999863

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.41  E-value=0.11  Score=39.02  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++++..|.+.++.++.|+.|..||.|+.||
T Consensus       124 ~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        124 NEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             eEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            46899999999999999999999999999986

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=93.38  E-value=0.087  Score=45.95  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .-.+.+...|.|.++.++.||.|++||.|+.|+.
T Consensus        65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~   98 (397)
T PRK15030         65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   98 (397)
T ss_pred             EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence            3458999999999999999999999999999974

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=93.32  E-value=0.092  Score=45.59  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus        62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~   94 (385)
T PRK09859         62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP   94 (385)
T ss_pred             EEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence            458999999999999999999999999999974

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.26  E-value=0.092  Score=45.93  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.++.+|.|.++.|+.||.|++||+|+.|+-
T Consensus        45 ~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~   76 (423)
T TIGR01843        45 VVQHLEGGIVREILVREGDRVKAGQVLVELDA   76 (423)
T ss_pred             ecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence            47899999999999999999999999999974

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=93.09  E-value=0.13  Score=32.98  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=28.4

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ..+++|..|.+.+++.+.|+.+..|+.|+.|
T Consensus        43 ~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          43 SDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             EEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            3589999999999999999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=92.90  E-value=0.12  Score=44.97  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+++.|.+.++.++.||.|++||.|+.|+-
T Consensus        64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~   96 (385)
T PRK09578         64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP   96 (385)
T ss_pred             EEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence            469999999999999999999999999999974

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=92.89  E-value=0.11  Score=43.56  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+|..|.+.++.++.||.|++||+|+.|+.
T Consensus        27 ~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~   59 (322)
T TIGR01730        27 ADLAAEVAGKITKISVREGQKVKKGQVLARLDD   59 (322)
T ss_pred             EEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence            358999999999999999999999999999864

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.67  E-value=0.13  Score=45.77  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.++..|.|.++.|+.||.|++||.|+.|+-
T Consensus        60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~   92 (457)
T TIGR01000        60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN   92 (457)
T ss_pred             EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence            358889999999999999999999999999864

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.66  E-value=0.13  Score=45.22  Aligned_cols=32  Identities=28%  Similarity=0.527  Sum_probs=30.2

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus        60 ~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~   91 (421)
T TIGR03794        60 TIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ   91 (421)
T ss_pred             EEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence            58999999999999999999999999999974

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=92.49  E-value=0.14  Score=44.83  Aligned_cols=32  Identities=28%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             cceeccccceeeeee-ecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVN-CKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~-~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.++..|.|.++. ++.||.|++||.|+.|+
T Consensus       124 ~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~  156 (409)
T PRK09783        124 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT  156 (409)
T ss_pred             EEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence            358999999999998 99999999999999986

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=92.22  E-value=0.16  Score=44.61  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -.+.++..|.|.++.++.||.|++||.|+.|.
T Consensus        88 v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld  119 (415)
T PRK11556         88 VTVRSRVDGQLMALHFQEGQQVKAGDLLAEID  119 (415)
T ss_pred             EEEEccccEEEEEEECCCCCEecCCCEEEEEC
Confidence            45899999999999999999999999999985

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=91.96  E-value=0.22  Score=37.21  Aligned_cols=31  Identities=35%  Similarity=0.507  Sum_probs=29.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ..+.+|..|.+.++.++.||.|..||.|+.|
T Consensus       122 ~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641        122 NEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             eEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            4699999999999999999999999999986

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=91.73  E-value=0.23  Score=40.20  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.++..|.|.++.++.||.|..||.|++||
T Consensus       242 ieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        242 NEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             eEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            46899999999999999999999999999997

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=91.06  E-value=0.21  Score=44.09  Aligned_cols=26  Identities=12%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -+|.+.+..++.||.|++||+|+++|
T Consensus       104 ~eG~I~~w~v~~GD~V~~Gq~L~~VE  129 (463)
T PLN02226        104 TDGTLATFLKKPGERVQADEAIAQIE  129 (463)
T ss_pred             ceEEEEEEEeCCCCEecCCCEEEEEE
Confidence            35777888888888888888888887

>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6

Probab=90.69  E-value=0.27  Score=34.99  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCC
Q psy10619         43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGP   76 (246)
Q Consensus        43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~   76 (246)
                      ...+|+++|. +|..+|+..++.+|+.+++|++|+
T Consensus        83 ~~~~DvvFp~lHG~~GEDG~iQglle~~~iPYvG~  117 (117)
T PF01820_consen   83 KLEVDVVFPVLHGPNGEDGTIQGLLELLGIPYVGC  117 (117)
T ss_dssp             CTTCSEEEEECCSTTTSSSHHHHHHHHTT-EBSSS
T ss_pred             cccCCEEEEeccCCCCcccHHHHHHHHcCCCCcCC
Confidence            5679999988 688899999999999999999875

3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=90.55  E-value=0.25  Score=43.16  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=24.2

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..|.|.+..++.||.|++||.|++||
T Consensus        57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vE   82 (418)
T PTZ00144         57 SEGTVVEWKKKVGDYVKEDEVICIIE   82 (418)
T ss_pred             ceEEEEEEEeCCCCEeCCCCEEEEEE
Confidence            35889999999999999999999998

>KOG0559|consensus

Probab=90.45  E-value=0.26  Score=41.48  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEccC
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT  246 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~~  246 (246)
                      -.+-+|..|++.+++|+.||.|+.||.|.+|+++
T Consensus       116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             eeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence            4588999999999999999999999999999873

>COG2308 Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=1.3  Score=38.64  Aligned_cols=123  Identities=15%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             HhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE--eCCHHHHHHHHHHHHHHHHhhcCCCceEEEec
Q psy10619         96 EAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI--ANNDQEAIEGFKLSSQEAAASFGDDRILVEKF  173 (246)
Q Consensus        96 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~--v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~  173 (246)
                      +.-+|.++++  .+...+++...+..+. -+||||+.++|+-|+.+  .-+.+|+.+..+++.+.      ...++.|+.
T Consensus       341 ~~lL~nv~T~--~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~------p~~~IaQ~~  411 (488)
T COG2308         341 EPLLPNVPTY--WCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKAD------PENYIAQPV  411 (488)
T ss_pred             ccccCCCCee--ecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhC------hhhhccccc
Confidence            4567888865  6788888877776664 58999999998888766  35677777777666542      356888888


Q ss_pred             ccCcceEEEEeeecceeecchhhhhhhhcCCCCCCCCcccceeccccceeeeeeecCCCeeeCCC
Q psy10619        174 IKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQ  238 (246)
Q Consensus       174 i~~g~e~~v~v~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~  238 (246)
                      +...   ++=++.++.. ... ..+.      .+-.-....-...|||-+..+..+.|..|---+
T Consensus       412 ~~lS---T~Pt~v~~~l-~pr-~vdl------R~f~~~~~~~~~v~pGGLtRVal~~gs~vvn~s  465 (488)
T COG2308         412 LQLS---TVPTFVDGGL-APR-HVDL------RPFALADRDGVQVMPGGLTRVALREGSLVVNSS  465 (488)
T ss_pred             cccc---ccceEECCee-ccc-cccc------eeEEEEcCCceEEcccceeeeeecCCceeEEcc
Confidence            7632   3334444432 111 1111      000000111267889999888888887665433

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=89.67  E-value=0.48  Score=30.35  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .|.+.+..++.|+.|++||+++.+|.
T Consensus        13 ~g~~~~~~v~~G~~v~~g~~l~~ie~   38 (73)
T cd06663          13 DGTVVKWLKKVGDKVKKGDVLAEIEA   38 (73)
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            57788899999999999999999984

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=89.56  E-value=0.43  Score=42.24  Aligned_cols=33  Identities=21%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.||..|++.++.++.||.|..||.|++||-
T Consensus       135 ~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~  167 (463)
T PLN02226        135 IDIASPASGVIQEFLVKEGDTVEPGTKVAIISK  167 (463)
T ss_pred             eEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence            469999999999999999999999999999973

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=89.29  E-value=0.47  Score=38.39  Aligned_cols=33  Identities=30%  Similarity=0.670  Sum_probs=29.8

Q ss_pred             cccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .+.-++||..|++.. .++.||.|+|||.|..|+
T Consensus       163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~  195 (256)
T TIGR03309       163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG  195 (256)
T ss_pred             ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence            346799999999998 999999999999999875

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=88.92  E-value=0.49  Score=40.38  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+|..|+|.++.++.|+.|..||.|+.++
T Consensus        46 ~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~   77 (371)
T PRK14875         46 NEVEAPAAGTLRRQVAQEGETLPVGALLAVVA   77 (371)
T ss_pred             EEEecCCCeEEEEEEcCCCCEeCCCCEEEEEe
Confidence            45999999999999999999999999999986

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=88.29  E-value=0.6  Score=40.89  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.||..|.+.++.++.||.|..||.|++||-
T Consensus        88 ~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~  120 (418)
T PTZ00144         88 VDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT  120 (418)
T ss_pred             EEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence            569999999999999999999999999999973

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=88.07  E-value=0.65  Score=42.62  Aligned_cols=34  Identities=32%  Similarity=0.566  Sum_probs=31.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEccC
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT  246 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~~  246 (246)
                      ..+.||..|+|.++.++.|+.|..||.|+.||-+
T Consensus       563 ~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~~  596 (596)
T PRK14042        563 TEIKAPANGVVAEILCQKGDKVTPGQVLIRVEVS  596 (596)
T ss_pred             eEEecCCCeEEEEEEeCCcCEECCCCEEEEEeCC
Confidence            5689999999999999999999999999999854

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=87.86  E-value=0.61  Score=39.48  Aligned_cols=32  Identities=31%  Similarity=0.480  Sum_probs=29.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -.++||..|.|..+.+..|+.|..|++|+.|.
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~  236 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVV  236 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEE
Confidence            46999999999999999999999999999874

>PRK13380 glycine cleavage system protein H; Provisional

Probab=87.70  E-value=0.57  Score=34.67  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=27.1

Q ss_pred             eeccccceeeeeeec-CCCeeeCCCeEEEEcc
Q psy10619        215 LHAPMPGLVKSVNCK-VGDQIMEGQELCVVGK  245 (246)
Q Consensus       215 l~sp~pg~i~~l~~~-~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+.|.+..+.+. .|+.|++||++++||-
T Consensus        38 ~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs   69 (144)
T PRK13380         38 YAQTMAGDVVFVRLKELGKKVEKGKPVATLES   69 (144)
T ss_pred             HHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEE
Confidence            456678899999987 8999999999999994

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=87.53  E-value=0.65  Score=40.43  Aligned_cols=31  Identities=32%  Similarity=0.449  Sum_probs=29.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      -.++||+.|.|..+.++.|+.|..|++|+.|
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~I  246 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAV  246 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEE
Confidence            3599999999999999999999999999876

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=87.49  E-value=13  Score=30.50  Aligned_cols=114  Identities=20%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCEEc--cccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619         29 QSYINVDKIIDAIRQTRADAVH--PGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN  106 (246)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~d~v~--~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~  106 (246)
                      ..|.+.+.+++-+++.++..|.  |+.+.  -+..+.+.|++.|+.+           .....+-+..++.|+-+.++  
T Consensus        92 DP~~~~~~fl~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~Gmgy-----------~~EVemi~~A~~~gl~T~~y--  156 (268)
T PF09370_consen   92 DPFRDMDRFLDELKELGFSGVQNFPTVGL--IDGQFRQNLEETGMGY-----------DREVEMIRKAHEKGLFTTAY--  156 (268)
T ss_dssp             -TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--H-----------HHHHHHHHHHHHTT-EE--E--
T ss_pred             CCCCcHHHHHHHHHHhCCceEEECCccee--eccHHHHHHHhcCCCH-----------HHHHHHHHHHHHCCCeeeee--
Confidence            4478899999999999999996  44444  3468899999998854           22455777789999999884  


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEEec--cCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619        107 GIIRDADHCVEIARDIGYPVMIKAS--AGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~P~vvKp~--~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                        +.+.+++...+ +.|--+++=-.  ..+|+.|.....+.++..+..+++.....
T Consensus       157 --vf~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~  209 (268)
T PF09370_consen  157 --VFNEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAAR  209 (268)
T ss_dssp             --E-SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHH
T ss_pred             --ecCHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHH
Confidence              56888887765 45544443222  23366677777788888888887776544

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=87.47  E-value=0.58  Score=39.98  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -.++||..|+|..+.++.|+.|..|++|+.|-
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~  240 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLI  240 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEe
Confidence            46999999999999999999999999999873

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=87.26  E-value=0.7  Score=42.47  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=30.4

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++||..|+|.++.++.|+.|..||.|++||
T Consensus       560 ~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        560 NEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             eEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            46999999999999999999999999999997

>cd06848 GCS_H Glycine cleavage H-protein

Probab=86.47  E-value=0.97  Score=30.86  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=24.0

Q ss_pred             ccccceeeeeeecC-CCeeeCCCeEEEEcc
Q psy10619        217 APMPGLVKSVNCKV-GDQIMEGQELCVVGK  245 (246)
Q Consensus       217 sp~pg~i~~l~~~~-G~~v~~g~~~~v~e~  245 (246)
                      ..+.|.+..+.+.. |+.|++||.+++||-
T Consensus        25 ~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs   54 (96)
T cd06848          25 QDLLGDIVFVELPEVGTEVKKGDPFGSVES   54 (96)
T ss_pred             HhhCCCEEEEEecCCCCEEeCCCEEEEEEE
Confidence            34567888877776 999999999999983

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=86.45  E-value=0.83  Score=41.99  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ..+.||..|+|.++.++.||.|..||.|++|
T Consensus       562 ~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        562 TEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             EEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            5699999999999999999999999999986

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=85.73  E-value=0.93  Score=36.89  Aligned_cols=29  Identities=24%  Similarity=0.479  Sum_probs=27.7

Q ss_pred             eeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ++||..|.+..+.+..|+.|..|++|+.|
T Consensus        91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i  119 (265)
T TIGR00999        91 VRSPFDGYITQKSVTLGDYVAPQAELFRV  119 (265)
T ss_pred             EECCCCeEEEEEEcCCCCEeCCCCceEEE
Confidence            79999999999999999999999999876

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=85.68  E-value=0.9  Score=38.04  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -.++||+.|.+..+.++.|+.|.+|++|+.|-
T Consensus       135 ~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~  166 (322)
T TIGR01730       135 TEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV  166 (322)
T ss_pred             CEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence            35999999999999999999999999999874

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=85.59  E-value=0.95  Score=38.10  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      -.++||..|.|..+.++.|+.|..|++++.|
T Consensus       155 ~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~I  185 (310)
T PRK10559        155 TVIRAPADGWVTNLNVYTGEFITRGSTAVAL  185 (310)
T ss_pred             CEEECCCCeEEEeEecCCCCEecCCCeeEEE
Confidence            4699999999999999999999999999875

>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function

Probab=85.48  E-value=1.5  Score=37.20  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=46.4

Q ss_pred             HHHHHHHHcCCeEeCCCHHHHHHhcCHHH-------HHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEecc
Q psy10619         61 SFVSRLKEEGVVFIGPTAECIRGMGDKLE-------SKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA  132 (246)
Q Consensus        61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~-------~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~  132 (246)
                      .+.+...+-++.+..+.  ...+..||..       .+.+| ++.-++.++++  .+.+.++.....+.+. -+|+||+.
T Consensus       222 GL~~A~r~G~V~iaNa~--G~gv~edkal~~~lp~~~r~~LgeellL~~VpT~--~cg~~~~~~~Vl~~l~-~lvvKp~~  296 (330)
T PF04174_consen  222 GLLEAYRAGNVVIANAP--GSGVAEDKALYAFLPRMIRYYLGEELLLPNVPTW--WCGDPEDREYVLANLD-ELVVKPAD  296 (330)
T ss_dssp             THHHHHHTTS-EEES-T--TTHHHHSTTTGGGHHHHHHHHH-S--SSEE---E--ETTSHHHHHHHHHSGG-GEEEEE--
T ss_pred             HHHHHHHhCCEEEECCC--ccchhcchhHHHHhHHHHHHHcCCCcccCCCCcE--eCCCHHHHHHHHhchh-hcEEEecC
Confidence            45666666777766322  2233445542       23333 24456666654  5788888877777665 69999999


Q ss_pred             CCCCceeEEeC--CHHHHHHHHHHHHH
Q psy10619        133 GGGGKGMRIAN--NDQEAIEGFKLSSQ  157 (246)
Q Consensus       133 g~g~~gv~~v~--~~~el~~~~~~~~~  157 (246)
                      +.||.|+.+-.  +. |.++.++++.+
T Consensus       297 g~gg~~~~~G~~~s~-e~~~~~~~I~~  322 (330)
T PF04174_consen  297 GYGGKGVYIGPKLSA-ERRALRAEILA  322 (330)
T ss_dssp             ------EEEGGG--H-HHHHHHHHHHH
T ss_pred             CCCCCcceeCCcCCH-HHHHHHHHHHh
Confidence            99999998853  33 66677776654

It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=85.30  E-value=0.81  Score=38.81  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      -.++||..|.+..+.++.|+.|..|++|+.|
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I  234 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTL  234 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEE
Confidence            4699999999999999999999999999976

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=84.85  E-value=3.5  Score=22.74  Aligned_cols=32  Identities=16%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD  121 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~  121 (246)
                      +...++.+|.++||+.|+..    .+.+++.+.+++
T Consensus         5 s~~~L~~wL~~~gi~~~~~~----~~rd~Ll~~~k~   36 (38)
T PF10281_consen    5 SDSDLKSWLKSHGIPVPKSA----KTRDELLKLAKK   36 (38)
T ss_pred             CHHHHHHHHHHcCCCCCCCC----CCHHHHHHHHHH
Confidence            34668999999999999842    577888776653

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=83.93  E-value=1.3  Score=38.71  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+|..|.+.++.++.|+.|..|+.|+.||-
T Consensus        46 ~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~   78 (407)
T PRK05704         46 LEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDE   78 (407)
T ss_pred             eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence            468999999999999999999999999999973

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=83.80  E-value=1.1  Score=38.33  Aligned_cols=30  Identities=27%  Similarity=0.620  Sum_probs=28.3

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      .+++|+.|.+..+.+++|+.|..|.+|+.+
T Consensus       210 ~IrAP~dG~V~~~~v~~G~~V~~G~~l~al  239 (352)
T COG1566         210 VIRAPVDGYVTNLSVRVGQYVSAGTPLMAL  239 (352)
T ss_pred             EEECCCCceEEeecccCCCeecCCCceEEE
Confidence            599999999999999999999999999865

>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T

Probab=83.79  E-value=5.5  Score=34.11  Aligned_cols=50  Identities=20%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH---hhcCCCceEEEeccc
Q psy10619        126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA---ASFGDDRILVEKFIK  175 (246)
Q Consensus       126 ~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~---~~~~~~~~lve~~i~  175 (246)
                      ++||...|.-|.||..+++.+|+...=++-+..-.   ....-+++||||=+.
T Consensus       260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~  312 (403)
T TIGR02049       260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY  312 (403)
T ss_pred             EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence            79999999999999999999998775444332211   111125789998775

ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=83.78  E-value=1.3  Score=37.39  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.++..|.+.++.++.||.|++||.|..|+-
T Consensus        68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            46777899999999999999999999999875

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=82.98  E-value=1.5  Score=38.49  Aligned_cols=31  Identities=19%  Similarity=0.458  Sum_probs=29.3

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .++||..|.|.+.+++.|+.|+.|++|+.|-
T Consensus       211 ~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~  241 (409)
T PRK09783        211 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  241 (409)
T ss_pred             EEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence            5999999999999999999999999999873

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=82.52  E-value=1.7  Score=38.07  Aligned_cols=32  Identities=25%  Similarity=0.462  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+|..|++.++.++.|+.|..|+.++.||
T Consensus        44 ~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~   75 (403)
T TIGR01347        44 LEVPSPADGVLQEILFKEGDTVESGQVLAILE   75 (403)
T ss_pred             eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            45899999999999999999999999999997

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=81.69  E-value=2.1  Score=26.42  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=27.1

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      .+.+|..|.+.......|+.+..|++|+.|
T Consensus        45 ~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          45 EVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            578899999999999999999999999864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=81.53  E-value=1.8  Score=40.21  Aligned_cols=33  Identities=27%  Similarity=0.527  Sum_probs=30.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.||..|++.++.++.||.|+.||.|+.||.
T Consensus        44 ~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~   76 (633)
T PRK11854         44 MEVPSPQAGVVKEIKVKVGDKVETGALIMIFES   76 (633)
T ss_pred             EEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEec
Confidence            459999999999999999999999999999974

>KOG2156|consensus

Probab=80.56  E-value=3.6  Score=36.76  Aligned_cols=64  Identities=19%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619         98 GVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK  175 (246)
Q Consensus        98 gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~  175 (246)
                      .++..|..+..-.+.+++....++. .--+||||....-|.|+++++...++..              ...++||+||+
T Consensus       279 ef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yie  343 (662)
T KOG2156|consen  279 EFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIE  343 (662)
T ss_pred             ccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhh
Confidence            3444333344667888888776652 2238899999999999999988776511              34567777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
3n6r_A	681	Crystal Structure Of The Holoenzyme Of Propionyl-co		3e-58
3n6r_A	681	Crystal Structure Of The Holoenzyme Of Propionyl-co		1e-08
2vqd_A	464	Crystal Structure Of Biotin Carboxylase From Pseudo		3e-43
3ho8_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		3e-41
3hbl_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		3e-41
3hb9_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		3e-41
3bg5_A	1173	Crystal Structure Of Staphylococcus Aureus Pyruvate		3e-41
4hnv_A	1173	Crystal Structure Of R54e Mutant Of S. Aureus Pyruv		3e-41
4hnu_A	1173	Crystal Structure Of K442e Mutant Of S. Aureus Pyru		3e-41
4hnt_A	1173	Crystal Structure Of F403a Mutant Of S. Aureus Pyru		3e-41
1ulz_A	451	Crystal Structure Of The Biotin Carboxylase Subunit		2e-39
3va7_A	1236	Crystal Structure Of The Kluyveromyces Lactis Urea		2e-39
3jzf_A	486	Crystal Structure Of Biotin Carboxylase From E. Col		5e-39
3g8d_A	444	Crystal Structure Of The Biotin Carboxylase Subunit		6e-39
2gps_A	469	Crystal Structure Of The Biotin Carboxylase Subunit		6e-39
1dv2_A	452	The Structure Of Biotin Carboxylase, Mutant E288k,		6e-39
3rv4_A	452	Crystal Structure Of E.Coli Biotin Carboxylase R16e		6e-39
1bnc_A	449	Three-Dimensional Structure Of The Biotin Carboxyla		6e-39
3rup_B	452	Crystal Structure Of E.Coli Biotin Carboxylase In C		7e-39
3g8c_A	444	Crystal Stucture Of Biotin Carboxylase In Complex W		7e-39
2gpw_A	469	Crystal Structure Of The Biotin Carboxylase Subunit		7e-39
2dzd_A	461	Crystal Structure Of The Biotin Carboxylase Domain		7e-38
2vpq_A	451	Crystal Structure Of Biotin Carboxylase From S. Aur		3e-37
2cqy_A	108	Solution Structure Of B Domain From Human Propionyl		8e-33
3tw7_A	1165	Structure Of Rhizobium Etli Pyruvate Carboxylase T8		1e-32
2qf7_A	1165	Crystal Structure Of A Complete Multifunctional Pyr		1e-32
3u9s_A	655	Crystal Structure Of P. Aeruginosa 3-methylcrotonyl		3e-32
3ouz_A	446	Crystal Structure Of Biotin Carboxylase-Adp Complex		3e-28
2yl2_A	540	Crystal Structure Of Human Acetyl-Coa Carboxylase 1		9e-22
3jrw_A	587	Phosphorylated Bc Domain Of Acc2 Length = 587		7e-20
3jrx_A	587	Crystal Structure Of The Bc Domain Of Acc2 In Compl		7e-20
3gid_A	540	The Biotin Carboxylase (Bc) Domain Of Human Acetyl-		7e-20
2hjw_A	573	Crystal Structure Of The Bc Domain Of Acc2 Length =		7e-20
1w96_A	554	Crystal Structure Of Biotin Carboxylase Domain Of A		7e-19
1w93_A	553	Crystal Structure Of Biotin Carboxylase Domain Of A		7e-19
4dim_A	403	Crystal Structure Of Phosphoribosylglycinamide Synt		5e-06
3orq_A	377	Crystal Structure Of N5-Carboxyaminoimidazole Synth		2e-05
3q1k_A	367	The Crystal Structure Of The D-Alanyl-Alanine Synth		2e-04
1ce8_A	1073	Carbamoyl Phosphate Synthetase From Escherichis Col		2e-04
1jdb_B	1073	Carbamoyl Phosphate Synthetase From Escherichia Col		2e-04
1a9x_A	1073	Carbamoyl Phosphate Synthetase: Caught In The Act O		2e-04
3i12_A	364	The Crystal Structure Of The D-alanyl-alanine Synth		2e-04
3mjf_A	431	Phosphoribosylamine-Glycine Ligase From Yersinia Pe		4e-04
2jku_A	94	Crystal Structure Of The N-Terminal Region Of The B		6e-04

>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681

Iteration: 1
 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 135/172 (78%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV++ADEAV IGPP A QSYI +DK++ AIR T A AVHPGYGFLSEN+ F   L+ EGV
Sbjct: 41  HVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGV 100
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
           +F+GP    I  MGDK+ SKK+A+EA V+ +PG+ G+I DAD  V+I+  IGYPVMIKAS
Sbjct: 101 IFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKAS 160
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKGMRIA NDQEA EGF+ S  EAA SFGDDRI +EKF+  PRHIEIQ
Sbjct: 161 AGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 179 HIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQ 238
            I  +G   K  ++T ++ E A+L+P K   D +K+L  PMPGL+  V+ +VG ++ EGQ
Sbjct: 579 RIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQ 638
Query: 239 ELCVV 243
            LC +
Sbjct: 639 ALCTI 643

>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas Aeruginosa Complexed With Ampcp Length = 464

Iteration: 1
 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 122/173 (70%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           H+ LADE+VCIGP  A QSY+ +  II A   T A A+HPGYGFL+ENA F  +++  G 
Sbjct: 41  HLSLADESVCIGPAPATQSYLQIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGF 100
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNG-IIRDADHCVEIARDIGYPVMIKA 130
            F+GPTAE IR MGDK+ +K   K AGV  +PG +G +  D +  + IAR++GYPV+IKA
Sbjct: 101 TFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKA 160
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           + GGGG+GMR+  ++ E I+  KL+  EA A+FG+  + +EKF+ NPRH+E+Q
Sbjct: 161 AGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQ 213

>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 43  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215

>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 43  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215

>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 43  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215

>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 66  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238

>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 66  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238

>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 66  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238

>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 66  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238

>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase Length = 451

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 126/174 (72%), Gaps = 3/174 (1%)
Query: 11  RHVKLADEAVCIGP-PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEE 69
           RHVKLADEA  IG  P+   +Y+N  +II+   +  ADA+HPGYGFL+ENA F    +E 
Sbjct: 40  RHVKLADEAYMIGTDPL--DTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEA 97
Query: 70  GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIK 129
           G+ FIGP  + I  MGDK  SK++ K+AGV ++PG +G+++  +    +AR+IGYPV++K
Sbjct: 98  GITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLK 157
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           A+AGGGG+G+RI  N++E ++ ++ +S+EA  +FG   +L+EKFI+NP+HIE Q
Sbjct: 158 ATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQ 211

>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea Carboxylase Length = 1236

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
Query: 2   LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENAS 61
           ++ DP  + +HV  AD +V +    AA++Y+++DKII+A ++T A A+ PGYGFLSENA 
Sbjct: 60  VYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENAD 119
Query: 62  FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121
           F  R  +E +VF+GP+ + IR +G K  ++++A+ A V ++PG +G+I+DA    E+A+ 
Sbjct: 120 FSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPG-SGLIKDAKEAKEVAKK 178
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
           + YPVM+K++AGGGG G++  +++ +    F+    +  + FGD  + +E+F+ N RH+E
Sbjct: 179 LEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVE 238
Query: 182 IQ 183
           IQ
Sbjct: 239 IQ 240

>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In Complex With Benzimidazoles Series Length = 486

Iteration: 1
 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 61  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 120
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 121 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 180
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 181 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 234

>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli Length = 444

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 40  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213

>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 60  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 119
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 120 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 179
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 180 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 233

>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 43  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 216

>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase Subunit Of Acetyl-Coa Carboxylase Length = 449

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 40  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213

>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With Biotin, Bicarbonate, Adp And Mg Ion Length = 444

Iteration: 1
 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 40  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213

>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469

Iteration: 1
 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G
Sbjct: 60  KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 119
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
            +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IK
Sbjct: 120 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 179
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AS GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 180 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 233

>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of Pyruvate Carboxylase Length = 461

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 12  HVKLADEAVCIG---PPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
           H   ADEA  +G    P+ A  Y++++ II+  +    DA+HPGYGFLSEN  F  R +E
Sbjct: 45  HRYKADEAYLVGEGKKPIEA--YLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCRE 102
Query: 69  EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
           EG++FIGP    +   GDK++++  A  AG+ +IPG +G +   +  V  A   GYP++I
Sbjct: 103 EGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIII 162
Query: 129 KASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           KA+ GGGG+GMRI  +  E  E F+ +  EA A+FG D + VEK I+NP+HIE+Q
Sbjct: 163 KAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQ 217

>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus Complexed With Amppnp Length = 451

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 123/183 (67%), Gaps = 2/183 (1%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           H ++ADEA C+GP ++  SY+N+  I+     T  D VHPGYGFL+ENA F    +   +
Sbjct: 40  HTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQL 99
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+ + I+ MG K  +K    +A V ++PG +G+++D     +IA+ IGYPV+IKA+
Sbjct: 100 KFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKAT 159
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ--GTTYKF 189
           AGGGGKG+R+A +++E   GF+++ QEA  +FG+  + +EKFI+N RHIEIQ  G +Y  
Sbjct: 160 AGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGN 219
Query: 190 LIQ 192
           +I 
Sbjct: 220 VIH 222

>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa Carboxylase Alpha Subunit Length = 108

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 86/96 (89%)
Query: 85  GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN 144
           GDK+ESK LAK+A VN IPGF+G+++DA+  V IAR+IGYPVMIKASAGGGGKGMRIA +
Sbjct: 7   GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHI 180
           D+E  +GF+LSSQEAA+SFGDDR+L+EKFI NPRHI
Sbjct: 67  DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102

>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 12  HVKLADEAVCIG--PPVAA-----QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS 64
           H   ADE+  +G  P +A      +SY+++D++I   + + ADA+HPGYG LSE+  FV 
Sbjct: 53  HRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVD 112
Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
              + G++FIGP A+ +R +G+K+ ++ LA   GV ++P    +  D     ++A  IGY
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           PVM+KAS GGGG+GMR+  ++ +  +    + +EA A+FG D + +EK ++  RH+E Q
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231

>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 12  HVKLADEAVCIG--PPVAA-----QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS 64
           H   ADE+  +G  P +A      +SY+++D++I   + + ADA+HPGYG LSE+  FV 
Sbjct: 53  HRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVD 112
Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
              + G++FIGP A+ +R +G+K+ ++ LA   GV ++P    +  D     ++A  IGY
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           PVM+KAS GGGG+GMR+  ++ +  +    + +EA A+FG D + +EK ++  RH+E Q
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231

>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex Length = 655

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 114/173 (65%)
Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           RHV  AD AV +G    A SY+  D+II A   + A A+HPGYGFLSENA F    +E G
Sbjct: 46  RHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAG 105
Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           ++F+GP A  I  MG K  +K L +EAGV ++PG++G  +D +     A  IGYPV++KA
Sbjct: 106 LLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKA 165
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           +AGGGGKGM++   + E  E    + +EA A+FGD R+LVEK++  PRH+EIQ
Sbjct: 166 AAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQ 218

>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From Campylobacter Jejuni Length = 446

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 118/183 (64%), Gaps = 6/183 (3%)
Query: 7   CVFQR------HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
           CV+        ++K AD ++CIG   +++SY+N+  II A     ADA+ PGYGFLSEN 
Sbjct: 34  CVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQ 93
Query: 61  SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIAR 120
           +FV    +  + FIGP+ E      DK ++K++ + AGV +IPG +G +  A+   ++A+
Sbjct: 94  NFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQVXQRAGVPVIPGSDGALAGAEAAKKLAK 153
Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHI 180
           +IGYPV++KA+AGGGG+G R+  N+++  + +  +  EA  +FGD     EK+I+NPRHI
Sbjct: 154 EIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSAESEAXTAFGDGTXYXEKYIQNPRHI 213
Query: 181 EIQ 183
           E+Q
Sbjct: 214 EVQ 216

>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain Length = 540

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 30/198 (15%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + G+
Sbjct: 91  YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGI 150
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
            F+GP ++ +  +GDK+ S  +A+ AG+  +P                            
Sbjct: 151 AFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYE 210
Query: 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD 165
            G ++D D  ++ A ++GYPVMIKAS GGGGKG+R  NN  +    F+    E   S   
Sbjct: 211 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS--- 267
Query: 166 DRILVEKFIKNPRHIEIQ 183
             I V +  K  RH+E+Q
Sbjct: 268 -PIFVMRLAKQSRHLEVQ 284

>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2 Length = 587

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + GV
Sbjct: 106 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 165
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
            F+GP +E +  +GDK+ S  +A+   V  +P                            
Sbjct: 166 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 225
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
             G ++D D  +E A  IG+P+MIKAS GGGGKG+R A    E+ E F +  ++  +   
Sbjct: 226 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 281
Query: 165 DDRILVEKFIKNPRHIEIQ 183
              I + K  ++ RH+E+Q
Sbjct: 282 GSPIFLMKLAQHARHLEVQ 300

>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With Soraphen A Length = 587

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + GV
Sbjct: 106 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 165
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
            F+GP +E +  +GDK+ S  +A+   V  +P                            
Sbjct: 166 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 225
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
             G ++D D  +E A  IG+P+MIKAS GGGGKG+R A    E+ E F +  ++  +   
Sbjct: 226 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 281
Query: 165 DDRILVEKFIKNPRHIEIQ 183
              I + K  ++ RH+E+Q
Sbjct: 282 GSPIFLMKLAQHARHLEVQ 300

>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa Carboxylase 2 (Acc2) In Complex With Soraphen A Length = 540

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + GV
Sbjct: 90  YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 149
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
            F+GP +E +  +GDK+ S  +A+   V  +P                            
Sbjct: 150 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 209
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
             G ++D D  +E A  IG+P+MIKAS GGGGKG+R A    E+ E F +  ++  +   
Sbjct: 210 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 265
Query: 165 DDRILVEKFIKNPRHIEIQ 183
              I + K  ++ RH+E+Q
Sbjct: 266 GSPIFLMKLAQHARHLEVQ 284

>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 Length = 573

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + GV
Sbjct: 100 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 159
Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
            F+GP +E +  +GDK+ S  +A+   V  +P                            
Sbjct: 160 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 219
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
             G ++D D  +E A  IG+P+MIKAS GGGGKG+R A    E+ E F +  ++  +   
Sbjct: 220 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 275
Query: 165 DDRILVEKFIKNPRHIEIQ 183
              I + K  ++ RH+E+Q
Sbjct: 276 GSPIFLMKLAQHARHLEVQ 294

>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae In Complex With Soraphen A Length = 554

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG- 70
           ++++AD+ + +       +Y NVD I+D   +   DAV  G+G  SEN     +L +   
Sbjct: 97  YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 156
Query: 71  -VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC-------------- 115
            V+FIGP    +R +GDK+ S  +A+ A V  IP ++G   D  H               
Sbjct: 157 KVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIP-WSGTGVDTVHVDEKTGLVSVDDDIY 215
Query: 116 -----------VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
                      ++ A+ IG+PVMIKAS GGGGKG+R    +++ I  +  ++ E   S  
Sbjct: 216 QKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS-- 273
Query: 165 DDRILVEKFIKNPRHIEIQ 183
              I + K     RH+E+Q
Sbjct: 274 --PIFIMKLAGRARHLEVQ 290

>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae Length = 553

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG- 70
           ++++AD+ + +       +Y NVD I+D   +   DAV  G+G  SEN     +L +   
Sbjct: 96  YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 155
Query: 71  -VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC-------------- 115
            V+FIGP    +R +GDK+ S  +A+ A V  IP ++G   D  H               
Sbjct: 156 KVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIP-WSGTGVDTVHVDEKTGLVSVDDDIY 214
Query: 116 -----------VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
                      ++ A+ IG+PVMIKAS GGGGKG+R    +++ I  +  ++ E   S  
Sbjct: 215 QKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS-- 272
Query: 165 DDRILVEKFIKNPRHIEIQ 183
              I + K     RH+E+Q
Sbjct: 273 --PIFIMKLAGRARHLEVQ 289

>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase From Anaerococcus Prevotii Length = 403

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 73  FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
            +G   E     GDK + K+  K+  VN    F  ++R+ +       ++  PV++KA+ 
Sbjct: 96  LVGLNEEAAIXCGDKYKXKEAFKKYNVNTARHF--VVRNENELKNALENLKLPVIVKATD 153
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ 192
             G KG+ IA  ++EAI+GF     E       D  +VE+FI+           Y+F  Q
Sbjct: 154 LQGSKGIYIAKKEEEAIDGF----NETXNLTKRDYCIVEEFIEG----------YEFGAQ 199
Query: 193 TEKEFEYAK-LLPPKPKLDETKILHAPMP 220
               F Y   +L   P  DET   H  +P
Sbjct: 200 A---FVYKNDVLFVXPHGDETYXSHTAVP 225

>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase From Staphylococcus Aureus Complexed With Adp Length = 377

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 79  ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGK 137
           + I+ + D+L  K+  K AG  ++P  +  ++++    +    +GYP ++K   GG  GK
Sbjct: 103 QAIQLLQDRLTEKETLKSAGTKVVPFIS--VKESTDIDKAIETLGYPFIVKTRFGGYDGK 160
Query: 138 GMRIANNDQEAIEGFKL 154
           G  + NN+++  EGFKL
Sbjct: 161 GQVLINNEKDLQEGFKL 177

>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp Length = 367

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA 112
           +G L E+ S    L+   + F+G          DK  +K+L ++AG+NI P F  + R  
Sbjct: 110 HGTLGEDGSLQGXLRVANLPFVGSDVLSSAACXDKDVAKRLLRDAGLNIAP-FITLTRTN 168
Query: 113 DHC---VEIARDIGYPVMIKASAGGGGKGM-RIANNDQEAIEGFKLSSQEAAASFG-DDR 167
            H     E+   +G P+ +K +  G   G+ ++AN  Q          Q  A +F  D +
Sbjct: 169 RHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQ--------YQQAVALAFEFDHK 220
Query: 168 ILVEKFIKNPRHIE 181
           ++VE+ IK  R IE
Sbjct: 221 VVVEQGIKG-REIE 233

>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 19  AVCIGPPVAAQSYIN------VDKIIDAIRQTRADAVHPGYGFLSE-NASF-VSR---LK 67
            +   P +A  +YI       V KII+   + R DAV P  G  +  N +  + R   L+
Sbjct: 53  TIMTDPEMADATYIEPIHWEVVRKIIE---KERPDAVLPTMGGQTALNCALELERQGVLE 109
Query: 68  EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVM 127
           E GV  IG TA+ I    D+       K+ G+      +GI    +  + +A D+G+P +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 128 IKASAGGGGKGMRIANNDQE 147
           I+ S   GG G  IA N +E
Sbjct: 168 IRPSFTMGGSGGGIAYNREE 187

>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 19  AVCIGPPVAAQSYIN------VDKIIDAIRQTRADAVHPGYGFLSE-NASF-VSR---LK 67
            +   P +A  +YI       V KII+   + R DAV P  G  +  N +  + R   L+
Sbjct: 53  TIMTDPEMADATYIEPIHWEVVRKIIE---KERPDAVLPTMGGQTALNCALELERQGVLE 109
Query: 68  EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVM 127
           E GV  IG TA+ I    D+       K+ G+      +GI    +  + +A D+G+P +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 128 IKASAGGGGKGMRIANNDQE 147
           I+ S   GG G  IA N +E
Sbjct: 168 IRPSFTMGGSGGGIAYNREE 187

>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 20  VCIGPPVAAQSYIN------VDKIIDAIRQTRADAVHPGYGFLSE-NASF-VSR---LKE 68
           +   P +A  +YI       V KII+   + R DAV P  G  +  N +  + R   L+E
Sbjct: 54  IMTDPEMADATYIEPIHWEVVRKIIE---KERPDAVLPTMGGQTALNCALELERQGVLEE 110
Query: 69  EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
            GV  IG TA+ I    D+       K+ G+      +GI    +  + +A D+G+P +I
Sbjct: 111 FGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCII 168
Query: 129 KASAGGGGKGMRIANNDQE 147
           + S   GG G  IA N +E
Sbjct: 169 RPSFTMGGSGGGIAYNREE 187

>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA 112
           +G L E+ S    L+   + F+G          DK  +K+L ++AG+NI P F  + R  
Sbjct: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAP-FITLTRTN 165
Query: 113 DHC---VEIARDIGYPVMIKASAGGGGKGM-RIANNDQEAIEGFKLSSQEAAASFG-DDR 167
            H     E+   +G P+ +K +  G   G+ ++AN  Q          Q  A +F  D +
Sbjct: 166 RHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQ--------YQQAVALAFEFDHK 217
Query: 168 ILVEKFIKNPRHIE 181
           ++VE+ IK  R IE
Sbjct: 218 VVVEQGIKG-REIE 230

>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis Length = 431

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKK-LAKEAGVNIIPGFNGIIRDADHCVEIARD 121
           V   +  G+   GPT    +  G K  +K  LA+    NI         D +  +   R 
Sbjct: 84  VDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARH---NIPSAEYQNFTDVEAALAYVRQ 140
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKFIKNPRH 179
            G P++IKA     GKG+ +A   +EA     ++   A  +FGD   RI+VE+F      
Sbjct: 141 KGAPIVIKADGLAAGKGVIVAXTQEEAET--AVNDXLAGNAFGDAGHRIVVEEF------ 192
Query: 180 IEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKI-------------LHAPMPGLVKSV 226
             + G    F++  + E     +LP     D  ++              ++P P +   V
Sbjct: 193 --LDGEEASFIVXVDGE----NVLPXATSQDHKRVGDGDTGPNTGGXGAYSPAPVVTDDV 246
Query: 227 NCKVGDQIM 235
           + +V DQ++
Sbjct: 247 HQRVXDQVI 255

>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin Acceptor Domain Of Human Propionyl-Coa Carboxylase Length = 94

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
           + +L +PMPG+V +V+ K GD + EGQE+CV+
Sbjct: 25  SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVI 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	1e-105
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	2e-13
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	1e-100
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	1e-07
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	1e-97
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	2e-97
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	3e-97
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	1e-96
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	8e-04
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	7e-95
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	4e-89
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	6e-88
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	6e-88
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	5e-86
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	6e-83
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	2e-04
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	7e-83
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	9e-05
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	9e-60
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	2e-21
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	9e-18
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	1e-16
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	1e-11
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	2e-11
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	9e-11
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	1e-10
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	3e-10
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	4e-10
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	2e-09
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	2e-09
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	2e-09
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	2e-09
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	4e-09
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	5e-09
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	1e-08
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	1e-08
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	5e-08
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	6e-08
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	7e-08
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	7e-08
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	9e-08
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	8e-08
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	9e-08
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	1e-07
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	1e-07
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	2e-07
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	6e-07
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	6e-07
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	9e-07
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	1e-06
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	3e-06
3df7_A	305	Putative ATP-grAsp superfamily protein; putative p	3e-06
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	6e-06
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	7e-06
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	8e-06
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	1e-05
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	2e-05
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	2e-05
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	4e-05
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	4e-05
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	6e-05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	7e-05
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	7e-05
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	2e-04
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	6e-04
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	2e-04
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	5e-04
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	9e-04

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score =  318 bits (818), Expect = e-105
 Identities = 114/173 (65%), Positives = 135/173 (78%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
            HV++ADEAV IGPP A QSYI +DK++ AIR T A AVHPGYGFLSEN+ F   L+ EG
Sbjct: 40  LHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEG 99

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           V+F+GP    I  MGDK+ SKK+A+EA V+ +PG+ G+I DAD  V+I+  IGYPVMIKA
Sbjct: 100 VIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKA 159

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           SAGGGGKGMRIA NDQEA EGF+ S  EAA SFGDDRI +EKF+  PRHIEIQ
Sbjct: 160 SAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPR--HI 180
           G    +  +A   G  +   +     +        + A    D   LV K  K      I
Sbjct: 521 GADFPVTIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKISGGFRI 580

Query: 181 EIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQEL 240
             +G   K  ++T ++ E A+L+P K   D +K+L  PMPGL+  V+ +VG ++ EGQ L
Sbjct: 581 RTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQAL 640

Query: 241 CVV 243
           C +
Sbjct: 641 CTI 643

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451

 Score =  291 bits (747), Expect = 1e-97
 Identities = 79/172 (45%), Positives = 118/172 (68%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           H ++ADEA C+GP ++  SY+N+  I+     T  D VHPGYGFL+ENA F    +   +
Sbjct: 40  HTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQL 99

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+ + I+ MG K  +K    +A V ++PG +G+++D     +IA+ IGYPV+IKA+
Sbjct: 100 KFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKAT 159

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGGKG+R+A +++E   GF+++ QEA  +FG+  + +EKFI+N RHIEIQ
Sbjct: 160 AGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQ 211

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446

 Score =  290 bits (746), Expect = 2e-97
 Identities = 75/172 (43%), Positives = 120/172 (69%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           ++K AD ++CIG   +++SY+N+  II A     ADA+ PGYGFLSEN +FV    +  +
Sbjct: 45  YLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNI 104

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP+ E +  M DK ++K++ + AGV +IPG +G +  A+   ++A++IGYPV++KA+
Sbjct: 105 KFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAA 164

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+GMR+  N+++  + +  +  EA  +FGD  + +EK+I+NPRHIE+Q
Sbjct: 165 AGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQ 216

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451

 Score =  290 bits (745), Expect = 3e-97
 Identities = 83/172 (48%), Positives = 123/172 (71%), Gaps = 1/172 (0%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HVKLADEA  IG      +Y+N  +II+   +  ADA+HPGYGFL+ENA F    +E G+
Sbjct: 41  HVKLADEAYMIGTD-PLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGI 99

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
            FIGP  + I  MGDK  SK++ K+AGV ++PG +G+++  +    +AR+IGYPV++KA+
Sbjct: 100 TFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKAT 159

Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           AGGGG+G+RI  N++E ++ ++ +S+EA  +FG   +L+EKFI+NP+HIE Q
Sbjct: 160 AGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQ 211

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score =  305 bits (784), Expect = 1e-96
 Identities = 71/173 (41%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           +HV  AD +V +    AA++Y+++DKII+A ++T A A+ PGYGFLSENA F  R  +E 
Sbjct: 69  QHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQEN 128

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           +VF+GP+ + IR +G K  ++++A+ A V ++PG  G+I+DA    E+A+ + YPVM+K+
Sbjct: 129 IVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKS 187

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           +AGGGG G++  +++ +    F+    +  + FGD  + +E+F+ N RH+EIQ
Sbjct: 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQ 240

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 210  DETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
            D+ ++L++   G        VGD +  G  + ++
Sbjct: 1165 DDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIII 1198

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449

 Score =  284 bits (729), Expect = 7e-95
 Identities = 88/173 (50%), Positives = 119/173 (68%), Gaps = 1/173 (0%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
           HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++  G 
Sbjct: 41  HVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGF 100

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR-DADHCVEIARDIGYPVMIKA 130
           +FIGP AE IR MGDK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IKA
Sbjct: 101 IFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA 160

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           S GGGG+GMR+   D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 161 SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461

 Score =  270 bits (692), Expect = 4e-89
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 12  HVKLADEAVCIGP-PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADEA  +G      ++Y++++ II+  +    DA+HPGYGFLSEN  F  R +EEG
Sbjct: 45  HRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEG 104

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           ++FIGP    +   GDK++++  A  AG+ +IPG +G +   +  V  A   GYP++IKA
Sbjct: 105 IIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKA 164

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           + GGGG+GMRI  +  E  E F+ +  EA A+FG D + VEK I+NP+HIE+Q
Sbjct: 165 ALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQ 217

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540

 Score =  269 bits (690), Expect = 6e-88
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 31/200 (15%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
            ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + G
Sbjct: 89  EYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNG 148

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG-------------------------- 104
           V F+GP +E +  +GDK+ S  +A+   V  +P                           
Sbjct: 149 VAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDV 208

Query: 105 -FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF 163
              G ++D D  +E A  IG+P+MIKAS GGGGKG+R A + ++    F    ++  +  
Sbjct: 209 YDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILF----RQVQSEI 264

Query: 164 GDDRILVEKFIKNPRHIEIQ 183
               I + K  ++ RH+E+Q
Sbjct: 265 PGSPIFLMKLAQHARHLEVQ 284

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587

 Score =  270 bits (693), Expect = 6e-88
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 31/200 (15%)

Query: 11  RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
            ++K+AD  V +       +Y NV+ I+D  ++    AV  G+G  SEN      L + G
Sbjct: 105 EYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNG 164

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG-------------------------- 104
           V F+GP +E +  +GDK+ S  +A+   V  +P                           
Sbjct: 165 VAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDV 224

Query: 105 -FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF 163
              G ++D D  +E A  IG+P+MIKAS GGGGKG+R A + ++    F    ++  +  
Sbjct: 225 YDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILF----RQVQSEI 280

Query: 164 GDDRILVEKFIKNPRHIEIQ 183
               I + K  ++ RH+E+Q
Sbjct: 281 PGSPIFLMKLAQHARHLEVQ 300

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554

 Score =  264 bits (678), Expect = 5e-86
 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 30/198 (15%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE--E 69
           ++++AD+ + +       +Y NVD I+D   +   DAV  G+G  SEN     +L +   
Sbjct: 97  YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 156

Query: 70  GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG------------------------F 105
            V+FIGP    +R +GDK+ S  +A+ A V  IP                          
Sbjct: 157 KVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQ 216

Query: 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD 165
            G     +  ++ A+ IG+PVMIKAS GGGGKG+R    +++ I  +     +AA     
Sbjct: 217 KGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALY----HQAANEIPG 272

Query: 166 DRILVEKFIKNPRHIEIQ 183
             I + K     RH+E+Q
Sbjct: 273 SPIFIMKLAGRARHLEVQ 290

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score =  267 bits (684), Expect = 6e-83
 Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)

Query: 12  HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
           H   ADE+  +G  +  A+SY+N+++IID  +Q   DA+HPGYGFLSEN  F  R  EEG
Sbjct: 43  HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           + FIGP  E +   GDK++++  A +A + +IPG +G I+  +   E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           ++GGGGKGMRI   + E  + F  +  EA  SFG+  + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 206  KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
            KPK D++   H  A MPG V  V   VG+ +   Q L + 
Sbjct: 1069 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1108

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score =  267 bits (685), Expect = 7e-83
 Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 7/179 (3%)

Query: 12  HVKLADEAVCIGPPVAA-------QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS 64
           H   ADE+  +G            +SY+++D++I   + + ADA+HPGYG LSE+  FV 
Sbjct: 53  HRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVD 112

Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
              + G++FIGP A+ +R +G+K+ ++ LA   GV ++P    +  D     ++A  IGY
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172

Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           PVM+KAS GGGG+GMR+  ++ +  +    + +EA A+FG D + +EK ++  RH+E Q
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 200  AKLLPPKPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
            A     + K +     H  APMPG++  V    G  +  G  L  +
Sbjct: 1081 ATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSI 1126

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108

 Score =  183 bits (466), Expect = 9e-60
 Identities = 71/104 (68%), Positives = 86/104 (82%)

Query: 81  IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
               GDK+ESK LAK+A VN IPGF+G+++DA+  V IAR+IGYPVMIKASAGGGGKGMR
Sbjct: 3   SGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMR 62

Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG 184
           IA +D+E  +GF+LSSQEAA+SFGDDR+L+EKFI NPRHI    
Sbjct: 63  IAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPS 106

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403

 Score = 90.9 bits (226), Expect = 2e-21
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 23/188 (12%)

Query: 14  KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGY-GFLSENASFVSRLKEEGVV 72
            LADE   +          N D++   ++    D            + + +    +E + 
Sbjct: 47  NLADEISYM-------DISNPDEVEQKVKDLNLDGAATCCLDTGIVSLARI--CDKENL- 96

Query: 73  FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
            +G   E     GDK + K+  K+  VN       ++R+ +       ++  PV++KA+ 
Sbjct: 97  -VGLNEEAAIMCGDKYKMKEAFKKYNVNTARH--FVVRNENELKNALENLKLPVIVKATD 153

Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI----QGTTYK 188
             G KG+ IA  ++EAI+GF  +          D  +VE+FI+                 
Sbjct: 154 LQGSKGIYIAKKEEEAIDGFNETMNLTK----RDYCIVEEFIEGY-EFGAQAFVYKNDVL 208

Query: 189 FLIQTEKE 196
           F++    E
Sbjct: 209 FVMPHGDE 216

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331

 Score = 79.9 bits (197), Expect = 9e-18
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 22/166 (13%)

Query: 14  KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYG----FLSENASFVSRLKEE 69
            +AD+   + P +    YI  D ++   +     A+          L++      R +  
Sbjct: 44  YMADQHYIV-PKIDEVEYI--DHLLTLCQDEGVTALLTLIDPELGLLAQATE---RFQAI 97

Query: 70  GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIK 129
           GV  I           DK    +     G+     +      +      A ++  PV +K
Sbjct: 98  GVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTY--ATMASFEEALAAGEVQLPVFVK 155

Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
              G     +R     +E  + F            +  ++V++ + 
Sbjct: 156 PRNGSASIEVRRVETVEEVEQLFSK----------NTDLIVQELLV 191

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474

 Score = 78.0 bits (192), Expect = 1e-16
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 34  VDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL 93
           V++I+       ADA+           +        G+   G   +      DK + +  
Sbjct: 91  VEQIVKVAEMFGADAITTNNELFIAPMAKACE--RLGLRGAGV--QAAENARDKNKMRDA 146

Query: 94  AKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFK 153
             +AGV  I   N  +   +       +IG P+++K +      G+ +  + + A + F 
Sbjct: 147 FNKAGVKSIK--NKRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFN 204

Query: 154 ------LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTE 194
                  S     A   +   + E+F++       Q   Y   I  E
Sbjct: 205 RVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIE 251

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 83  GMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
              DK  +K+L    G+        +    +     +I  ++G  V +KA+  G   G+ 
Sbjct: 133 SF-DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGIS 191

Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
              N +E  E         +  + D ++L+E+ +   R +E+
Sbjct: 192 RVTNAEEYTEALSD-----SFQY-DYKVLIEEAVNGARELEV 227

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
              +K  +K  AK+ G+  +     +            +  +P ++K S  G   G+ + 
Sbjct: 147 SY-NKYLTKLYAKDLGIKTLDYV-LLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVV 204

Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
             ++E I        ++A  +    +L+E FI+  +   +
Sbjct: 205 KEEKELIYAL-----DSAFEY-SKEVLIEPFIQGVKEYNL 238

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322

 Score = 59.9 bits (146), Expect = 9e-11
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
            M DK  SK++  +AGV ++P     +R  +           P  +K +  G   G+   
Sbjct: 116 CM-DKDLSKRVLAQAGVPVVPWV--AVRKGE---PPVVPFDPPFFVKPANTGSSVGISRV 169

Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
              Q+            A  + D++ +VEK +   R +E+
Sbjct: 170 ERFQDLEAAL-----ALAFRY-DEKAVVEKALSPVRELEV 203

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 38/154 (24%)

Query: 59  NASFVSRLKEEG--VVFI---GPTAE--CIRG----MG---------------DKLESKK 92
               +S LK+EG    F    G   E   I+G     G               DK  +K 
Sbjct: 54  AERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKL 113

Query: 93  LAKEAGVNIIPGFNGIIRDAD---HCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
           + ++ GV   P F  ++R  D      +I   +G P+ +K ++ G    +          
Sbjct: 114 VWQQTGVPT-PPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALP 172

Query: 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
                     AA+  D  ++VEK I+     E  
Sbjct: 173 AALSE-----AATH-DKIVIVEKSIEGGG--EYT 198

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           DK  SKK+ +  G+   P +  + +  D   +    +G+P+++K ++GG   G++I  + 
Sbjct: 97  DKNISKKILRYEGIET-PDWIELTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDK 155

Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
            E I   +   +       D  +++EK+IK
Sbjct: 156 DELISMLETVFEW------DSEVVIEKYIK 179

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 83  GMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
            M DK  +K+L ++AG+NI P        R A    E+   +G P+ +K +  G   G+ 
Sbjct: 138 CM-DKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVS 196

Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
              N+ +  +         A  F D +++VE+ IK  R IE 
Sbjct: 197 KVANEAQYQQAV-----ALAFEF-DHKVVVEQGIK-GREIEC 231

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 13/105 (12%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGF----NGIIRDADHCVE-IARDIGYPVMIKASAGGGGK 137
            M DKL  K+L +  G+  +P      +   +   + ++ +   + YPV +K +  G   
Sbjct: 127 SM-DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 138 GMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           G+   NN+ E  EG      + A  F D ++++E+ +   R IE+
Sbjct: 186 GISKCNNEAELKEGI-----KEAFQF-DRKLVIEQGVN-AREIEV 223

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
           GM DK  +KKL    G+ +          +    +    +G PV +K + GG   G+   
Sbjct: 149 GM-DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRV 207

Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           ++  +            A    D +++VE  I   R +E 
Sbjct: 208 SSWDQLPAAV-----ARARRH-DPKVIVEAAIS-GRELEC 240

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 83  GMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
            M DK  +K++ ++A + + P   F+           +   +G P+ +K +  G   G+ 
Sbjct: 157 AM-DKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVS 215

Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
                        L     A ++ D ++LVE  +   R IE 
Sbjct: 216 QVRTADAFAAALAL-----ALAY-DHKVLVEAAVA-GREIEC 250

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 37/148 (25%)

Query: 59  NASFVSRLKEEG--VVFI---GPTAE--CIRG----MG---------------DKLESKK 92
               V++LK  G   VFI   G   E   ++G    MG               DKL SK 
Sbjct: 43  KEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102

Query: 93  LAKEAGVN-----IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQE 147
           L + AG+       +         +D  +     +G PV++K S  G   GM     +  
Sbjct: 103 LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA 162

Query: 148 AIEGFKLSSQEAAASFGDDRILVEKFIK 175
             +  +L+ Q       D+ +L+EK++ 
Sbjct: 163 LQDALRLAFQH------DEEVLIEKWLS 184

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
            M DK  +  +AK AG+     +  +I   D    +A    YPV +K +  G   G++  
Sbjct: 130 CM-DKSLTYIVAKNAGIATPAFW--VINKDDR--PVAATFTYPVFVKPARSGSSFGVKKV 184

Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           N+  E          E+A  + D +IL+E+ +     +  
Sbjct: 185 NSADELDYAI-----ESARQY-DSKILIEQAVS-GCEVGC 217

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 16  ADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVF 73
           A  +  I       + ++ D +   +   +   + P      E      + +L+EEG+  
Sbjct: 52  AHRSHVI-------NMLDGDALRRVVELEKPHYIVP----EIEAIATDMLIQLEEEGLNV 100

Query: 74  IGPTAECIRGMGDKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
           + P A   +   ++   ++LA +E  +     +           E   DIGYP ++K   
Sbjct: 101 V-PCARATKLTMNREGIRRLAAEELQLPTST-Y-RFADSESLFREAVADIGYPCIVKPVM 157

Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
              GKG     + ++  + +K +  +     G  R++VE  +
Sbjct: 158 SSSGKGQTFIRSAEQLAQAWKYA--QQGGRAGAGRVIVEGVV 197

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Length = 750

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 20/112 (17%)

Query: 84  MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRI- 141
           M +K+ +KK+  E       G      D    +     I   P+++K  +   G G+ I 
Sbjct: 482 MANKVVTKKILDEKHFPTPFG--DEFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIF 539

Query: 142 --ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191
             + N     +   ++  E      D  ILVE++        I+GT Y+F +
Sbjct: 540 KTSANLASYEKAIDIAFTE------DSAILVEEY--------IEGTEYRFFV 577

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
            M DK  +  +A+ AG+     +   +   +        + YPV +K +  G   G+   
Sbjct: 130 CM-DKSLTYLVARSAGIATPNFW--TVTADEK--IPTDQLTYPVFVKPARSGSSFGVSKV 184

Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
             +++          EAA  + D ++L+E+ +     I  
Sbjct: 185 AREEDLQGAV-----EAAREY-DSKVLIEEAVI-GTEIGC 217

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 83  GMGDKLESKKLAKEAGVNIIPGF---NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGM 139
            M +K  +K + +  G+ ++           +  +   + R     + +KA + G     
Sbjct: 138 CM-EKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVAT 196

Query: 140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
                + E  +       +    + DDR++VE  I+  R IE 
Sbjct: 197 LPVKTETEFTKAV-----KEVFRY-DDRLMVEPRIR-GREIEC 232

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 23/165 (13%)

Query: 15  LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSE----NASFVSRLKEEG 70
           +A  +          + ++ D +   + + + DA+ P      E    N   +   +++G
Sbjct: 59  VAHRSYVG-------NMMDKDFLWSVVEREKPDAIIP------EIEAINLDALFEFEKDG 105

Query: 71  VVFIGPTAECIRG-MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIK 129
              + P A      M  +   + L KEA V     +       D   E    IGYP   K
Sbjct: 106 YFVV-PNARATWIAMHRERLRETLVKEAKVPTSR-Y-MYATTLDELYEACEKIGYPCHTK 162

Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
           A     GKG       ++  + ++ +  +  A    ++I+VE+ I
Sbjct: 163 AIMSSSGKGSYFVKGPEDIPKAWEEA--KTKARGSAEKIIVEEHI 205

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 205 PKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
              +   + +L +PMPG+V +V+ K GD + EGQE+CV+
Sbjct: 18  LYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVI 56

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 65  RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
            L+  GV  IG + + I    D+   +   +   +      N  +   +  VE A++IGY
Sbjct: 653 ALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPA--NATVTAIEMAVEKAKEIGY 710

Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
           P++++AS   GG+ M I  ++ +    F+     A +   D  +L++ F+ +   +++
Sbjct: 711 PLVVRASYVLGGRAMEIVYDEADLRRYFQ----TAVSVSNDAPVLLDHFLDDAVEVDV 764

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073

 Score = 51.3 bits (124), Expect = 9e-08
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 24  PPVAAQSYI---NVDKIIDAIRQTRADAVHPGYG---------FLSENASFVSRLKEEGV 71
           P +A  +YI   + + +   I + R DAV P  G          L         L+E GV
Sbjct: 58  PEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGV----LEEFGV 113

Query: 72  VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
             IG TA+ I    D+       K+ G+       GI    +  + +A D+G+P +I+ S
Sbjct: 114 TMIGATADAIDKAEDRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPS 171

Query: 132 --AGGGGKGMRIANNDQEAIE----GFKLS 155
              GG G G  IA N +E  E    G  LS
Sbjct: 172 FTMGGSGGG--IAYNREEFEEICARGLDLS 199

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Length = 757

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 21/113 (18%)

Query: 84  MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE-IARDIGYPVMIKASAGGGGKGMRI- 141
           M +K+ +KK+ ++AG N+           +  V   A      V+IK  +   G G+ I 
Sbjct: 487 MENKVVTKKVLQKAGFNVPQSV--EFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIF 544

Query: 142 ---ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191
                N ++  +  +++ +E      D  ++VE +        + GT Y+F +
Sbjct: 545 QQGVQNREDFAKALEIAFRE------DKEVMVEDY--------LVGTEYRFFV 583

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
                 RL+    ++  P A+ +    D+L  K   +  GV   P F+  +   +   E 
Sbjct: 71  PVEAARRLEGRLPLY--PPAKALEVAQDRLREKTFFQGLGVPT-PPFH-PVDGPEDLEEG 126

Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
            + +G P ++K   GG  GKG  +   ++EA         EA  + G   +++E F+
Sbjct: 127 LKRVGLPALLKTRRGGYDGKGQALVRTEEEA--------LEALKALGGRGLILEGFV 175

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 83  GMGDKLESKKLAKEA-GVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGM 139
            M DK+ + ++ + A  +  +                E+   + YPV +K +  G   G+
Sbjct: 159 AM-DKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGI 217

Query: 140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
             A N  +  +         A  + D R+L+E+ + + R IE+
Sbjct: 218 SKAENRTDLKQAI-----ALALKY-DSRVLIEQGV-DAREIEV 253

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Length = 361

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 4   PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFV 63
               V  +  K+AD+ + +       ++ ++       +    +++   +G         
Sbjct: 49  KGRDVPYKRFKVADKFIYV------DNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLD 102

Query: 64  SRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG 123
           +      V   G     +R   ++    KL +EAG+ +   +           E   DI 
Sbjct: 103 NVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKKY-----------ESPEDID 150

Query: 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFK-LSSQEAAASFGDDRILVEKFIKNPR 178
             V++K     GG+G  IA++ +E  +  + L  +            +E+++    
Sbjct: 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTN 206

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Length = 389

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 17/117 (14%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
           +   +  L++   +     ++ +    ++   K   ++AG+ +   +  ++++ +   E 
Sbjct: 87  DYRCLQWLEKHAYLP--QGSQLLSKTQNRFTEKNAIEKAGLPVAT-YR-LVQNQEQLTEA 142

Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
             ++ YP ++K + GG  GKG  +  ++ +          EA         ++EK++
Sbjct: 143 IAELSYPSVLKTTTGGYDGKGQVVLRSEADV--------DEARKLANAAECILEKWV 191

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Length = 355

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 17/120 (14%)

Query: 58  EN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC 115
           E    + ++R       F     +    + D+L  K+L  +  +   P +  ++ +    
Sbjct: 51  ERWPETALTRQLARHPAF--VNRDVFPIIADRLTQKQLFDKLHLPTAP-WQ-LLAERSEW 106

Query: 116 VEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
             +   +G   ++K   GG  G+G      ++          Q  A  +G+   +VE+ I
Sbjct: 107 PAVFDRLGELAIVKRRTGGYDGRGQWRLRANETE--------QLPAECYGE--CIVEQGI 156

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 47  DAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN 106
                     S   +    L   G+  +    E I   GDK  +     +AG+       
Sbjct: 50  TVALERCVSQSRGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVALAKAGLPQPK--T 106

Query: 107 GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD 166
            +  D +  + +    GYPV++K   G  G+   +A              +E    F   
Sbjct: 107 ALATDREEALRLMEAFGYPVVLKPVIGSWGRL--LAXXXXXXXXXXXXXXKEVLGGFQHQ 164

Query: 167 RILVEKFIKNP 177
              ++++++ P
Sbjct: 165 LFYIQEYVEKP 175

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
           +   +  +  E  +   P+ + IR + +K   K+  ++ G+ +      +        ++
Sbjct: 98  DTYALEEVASEVKIE--PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKV 155

Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
              +GYP+M+K+      G+G    N+  +          EA  +  D  +  EK+ 
Sbjct: 156 GEQLGYPLMLKSKTMAYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEKWA 204

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Length = 334

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 20/169 (11%)

Query: 18  EAVCIGPPVAAQSYINVDKIIDAI--RQTRADAVHPGYGFLSENASFVS-----RLKEEG 70
           E +  G       Y     + D     +   + +      +    SFV+      ++   
Sbjct: 26  ETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMK 85

Query: 71  VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
           V + G     +R   D+   +K  K+AG+ + P             E   DI  PV++K 
Sbjct: 86  VPYFG-NKRVLRWESDRNLERKWLKKAGIRV-P----------EVYEDPDDIEKPVIVKP 133

Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH 179
               GGKG  +A + ++     +              I +++++     
Sbjct: 134 HGAKGGKGYFLAKDPEDFWRKAE-KFLGIKRKEDLKNIQIQEYVLGVPV 181

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Length = 419

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD--HCV 116
            A+ +  L     V   P   C+    D++  K+  + +GV +      I   A      
Sbjct: 108 PAASLDFLARTTFVA--PAGRCVAVAQDRIAEKRFIEASGVPV-APHVVIESAAALAALD 164

Query: 117 EIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
           + A D   P ++K +  G  GKG    +  +EA        ++A A+ G    ++EK +
Sbjct: 165 DAALDAVLPGILKTARLGYDGKGQVRVSTAREA--------RDAHAALGGVPCVLEKRL 215

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 28/196 (14%)

Query: 13  VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
                        +   S  +++K ++     ++DA              +++  E+   
Sbjct: 42  TGFVRPEFSCLFTLPVDSMDSMEKYLE-----KSDAFLIIAPEDDFLLYTLTKKAEKYCE 96

Query: 73  FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
            +G ++  I    DK E  K  +                        R +    +IK   
Sbjct: 97  NLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSL--------------RPLDCKFIIKPRT 142

Query: 133 GGGGKGMRIANND------QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTT 186
              G+G+  ++        QE IEG  LS    + + G+D   +    +   +    G  
Sbjct: 143 ACAGEGIGFSDEVPDGHIAQEFIEGINLS---VSLAVGEDVKCLSVNEQIINNFRYAGAV 199

Query: 187 YKFLIQTEKEFEYAKL 202
               I  E + E  + 
Sbjct: 200 VPARISDEVKREVVEE 215

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Length = 442

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
              L EEG++  GP+    R    K  +K+L    G   IP    G   D +   +    
Sbjct: 100 SDALTEEGILVFGPSKAAARLESSKGFTKELCMRYG---IPTAKYGYFVDTNSAYKFIDK 156

Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
              P+++KA     GKG  I +  +EA              FG+    I++E+F
Sbjct: 157 HKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHK--FGEAGCAIIIEEF 208

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Length = 424

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
           V   ++ G+   GP  E  +  G K  +K   K+ G   IP      F     D +   E
Sbjct: 79  VDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYG---IPTARYEVFT----DFEKAKE 131

Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
               +G P+++KA     GKG  +    ++AIE       +    FG   +R+++E+F
Sbjct: 132 YVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKI--FGKSSERVVIEEF 187

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 209 LDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
           +    ++ APMPG V  V  +VGD++  GQ L V+
Sbjct: 2   VVSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVL 36

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Length = 431

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
           V   +  G+   GPT    +  G K  +K          IP      F     D +  + 
Sbjct: 84  VDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHN---IPSAEYQNFT----DVEAALA 136

Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
             R  G P++IKA     GKG+ +A   +EA           A  FGD   RI+VE+F
Sbjct: 137 YVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNA--FGDAGHRIVVEEF 192

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Length = 451

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
           V R   EG+   GP+       G K  +K+L K+ G   IP   +      +        
Sbjct: 100 VDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYG---IPTADHAAFTSYEEAKAYIEQ 156

Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
            G P++IKA     GKG+ +A   +EA+   K +  +    FG    ++++E++
Sbjct: 157 KGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQ--FGTAGSQVVIEEY 208

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Length = 422

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
           V   ++ G+   GP+       G K  +K L K+     IP      F       D    
Sbjct: 79  VDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYD---IPTAEYETFT----SFDEAKA 131

Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
             ++ G P++IKA     GKG+ +A  ++EAI       ++    FGD    +++E++
Sbjct: 132 YVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEK--FGDASASVVIEEY 187

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Length = 417

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
               +  G++  GPT +     G K  +K L +  G   IP     + R+    +    +
Sbjct: 78  ADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYG---IPTARYRVFREPLEALAYLEE 134

Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKF 173
           +G PV++K S    GKG+ +A +  +A +        A        ++VE++
Sbjct: 135 VGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEG----GEVVVEEY 182

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
             APM G ++ V  K GD++  G  L V+
Sbjct: 17  PLAPMTGTIEKVFVKAGDKVKAGDSLMVM 45

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
             M G +  V+ K GDQI +GQE+ ++
Sbjct: 4   IQMAGNLWKVHVKAGDQIEKGQEVAIL 30

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Length = 377

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 59  NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
           +A  +  L E+  +      + I+ + D+L  K+  K AG  ++P F   ++++    + 
Sbjct: 85  SAQQLKLLCEKYNIP--QGYQAIQLLQDRLTEKETLKSAGTKVVP-FI-SVKESTDIDKA 140

Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
              +GYP ++K   GG  GKG  + NN+++         QE          + EK++
Sbjct: 141 IETLGYPFIVKTRFGGYDGKGQVLINNEKDL--------QEGFKLIETSECVAEKYL 189

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
           + AP+ G V  +  K GD +  GQ + V+
Sbjct: 11  IPAPLAGTVSKILVKEGDTVKAGQTVLVL 39

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244
           ET+I +AP  G V+ V  K  D +  GQ L  +G
Sbjct: 45  ETEI-NAPTDGKVEKVLVKERDAVQGGQGLIKIG 77

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Length = 452

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 63  VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
           V  L+  GV   GPTAE  +    K  +K+     G   IP      F       +    
Sbjct: 105 VGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHG---IPTAQWKAFT----KPEEACS 157

Query: 118 IARDIGYP-VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
                 +P +++KAS    GKG+ +A + +EA +  +   QE A  FG   + I++E+ 
Sbjct: 158 FILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKA--FGAAGETIVIEEL 214

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Length = 238

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 89  ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
           E+K++ K  G+ +      + +  D  +E A++IGYPV++K  +
Sbjct: 24  EAKQVLKAYGLPVPEE--KLAKTLDEALEYAKEIGYPVVLKLMS 65

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 412

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 16/107 (14%)

Query: 74  IGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVEIARDIGYPVMI 128
            GP  E  R  G K+ +K+  K+ G   I               +   E  +    P +I
Sbjct: 94  FGPVKEVARLEGSKVYAKRFMKKYG---IRTARFEVAE----TPEELREKIKKFSPPYVI 146

Query: 129 KASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
           KA     GKG+ I ++ +E IE                   +++++F
Sbjct: 147 KADGLARGKGVLILDSKEETIEKGSKLIIGEL--IKGVKGPVVIDEF 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	100.0
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	100.0
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	100.0
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.98
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.97
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	99.97
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	99.97
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	99.97
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	99.97
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	99.97
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.96
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.96
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	99.96
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	99.94
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	99.93
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	99.93
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	99.93
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	99.92
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	99.92
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	99.92
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	99.91
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	99.91
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	99.91
3vot_A	425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	99.91
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.91
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	99.91
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	99.91
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	99.91
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	99.91
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	99.91
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.9
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	99.9
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	99.9
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	99.9
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	99.9
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	99.9
4fu0_A	357	D-alanine--D-alanine ligase 7; vancomycin resistan	99.89
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	99.89
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	99.89
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	99.89
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.89
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	99.89
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	99.89
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	99.88
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	99.88
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	99.87
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	99.87
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	99.86
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	99.86
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	99.86
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	99.85
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	99.84
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	99.84
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	99.82
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	99.79
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	99.78
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	99.71
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	99.7
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	99.69
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	99.69
1z2n_X	324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	99.67
3df7_A	305	Putative ATP-grAsp superfamily protein; putative p	99.66
1i7n_A	309	Synapsin II; synapse, phosphorylation, neuropeptid	99.65
2pbz_A	320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	99.61
2p0a_A	344	Synapsin-3, synapsin III; neurotransmitter release	99.6
1gsa_A	316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	99.6
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	99.59
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	99.48
2q7d_A	346	Inositol-tetrakisphosphate 1-kinase; inositol kina	99.47
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	99.47
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	99.41
3t7a_A	330	Inositol pyrophosphate kinase; ATP-grAsp fold, tra	98.99
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	98.2
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	97.97
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	97.64
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	97.53
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	97.44
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	97.38
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	97.29
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	97.25
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	97.2
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	97.18
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	97.1
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	97.1
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	96.86
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	96.76
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	96.71
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	96.71
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	96.69
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	96.64
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	96.58
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	96.41
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	96.39
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	96.37
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	96.34
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	96.26
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	96.23
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	96.2
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	96.16
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.16
3tig_A	380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	96.12
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	96.1
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	96.0
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	96.0
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	95.9
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.87
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	95.81
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	95.75
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	95.73
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	95.62
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	95.5
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	95.35
3n6x_A	474	Putative glutathionylspermidine synthase; domain o	94.98
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	94.93
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	94.83
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	94.74
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	94.67
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	94.6
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	94.6
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	94.52
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	94.49
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	94.18
1hpc_A	131	H protein of the glycine cleavage system; transit	94.16
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	93.89
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	93.75
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	93.43
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	93.43
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	93.03
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	92.89
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	92.85
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	92.84
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	92.37
2io8_A	619	Bifunctional glutathionylspermidine synthetase/ami	91.94
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	90.92
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	90.53
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	89.16
3klr_A	125	Glycine cleavage system H protein; antiparallel be	83.66
2vob_A	652	Trypanothione synthetase; ligase; 2.3A {Leishmania	83.03
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	81.64
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	81.33
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	81.2

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*

Probab=100.00  E-value=1.3e-32  Score=245.05  Aligned_cols=186  Identities=32%  Similarity=0.509  Sum_probs=168.4

Q ss_pred             CCcCCCC--CCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCH
Q psy10619          1 MLFPDPC--VFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTA   78 (246)
Q Consensus         1 ~v~~d~~--~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~   78 (246)
                      +||++.|  ++++++++||+++.+++.....+|++.+.++++|++.++|+|+|++|+++|+..+++.+++.|++++|+++
T Consensus        93 av~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~  172 (587)
T 3jrx_A           93 VMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPS  172 (587)
T ss_dssp             EEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCH
T ss_pred             EEecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCH
Confidence            3677545  99999999999999988777789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHhCCCCCCCCc---------------------------cccCCHHHHHHHHHHhCCcEEEEec
Q psy10619         79 ECIRGMGDKLESKKLAKEAGVNIIPGFN---------------------------GIIRDADHCVEIARDIGYPVMIKAS  131 (246)
Q Consensus        79 ~~~~~~~dK~~~~~~l~~~gip~p~~~~---------------------------~~~~~~~~~~~~~~~~~~P~vvKp~  131 (246)
                      +++.++.||..++++|+++|||+|++..                           ..+.+.+++.++++++|||+||||.
T Consensus       173 ~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~  252 (587)
T 3jrx_A          173 EAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKAS  252 (587)
T ss_dssp             HHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEET
T ss_pred             HHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeC
Confidence            9999999999999999999999999752                           1178899999999999999999999


Q ss_pred             cCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       132 ~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .|+||+|++++++.+|+.++++.+....    .+..++||+||++++|++|++++|+.+
T Consensus       253 ~GgGGkGv~iV~s~eEL~~a~~~a~~~~----~~~~vlVEeyI~g~rei~V~vl~D~~G  307 (587)
T 3jrx_A          253 EGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIFLMKLAQHARHLEVQILADQYG  307 (587)
T ss_dssp             TCCSSSSEEEECSTTTHHHHHHHHHHHS----TTCCEEEEECCCSCEEEEEEEEECSSS
T ss_pred             CCCCCCCeEEeCCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCCC
Confidence            9999999999999999999998876532    247899999999559999999998743

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A

Probab=100.00  E-value=1.6e-32  Score=243.55  Aligned_cols=186  Identities=32%  Similarity=0.509  Sum_probs=161.0

Q ss_pred             CCcCCCC--CCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCH
Q psy10619          1 MLFPDPC--VFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTA   78 (246)
Q Consensus         1 ~v~~d~~--~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~   78 (246)
                      +||++.|  ++++++++||+++.+++.....+|++.+.++++|++.++|+|+|++|+++|+..+++.+++.|++++|+++
T Consensus        77 av~s~~D~~~~a~~~~~ADe~~~i~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~  156 (540)
T 3glk_A           77 VMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPS  156 (540)
T ss_dssp             EEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCH
T ss_pred             EEEcCcccCcCChhHHhCCEEEEeCCCCcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCH
Confidence            3677445  99999999999999988777789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHhCCCCCCCCc---------------------------cccCCHHHHHHHHHHhCCcEEEEec
Q psy10619         79 ECIRGMGDKLESKKLAKEAGVNIIPGFN---------------------------GIIRDADHCVEIARDIGYPVMIKAS  131 (246)
Q Consensus        79 ~~~~~~~dK~~~~~~l~~~gip~p~~~~---------------------------~~~~~~~~~~~~~~~~~~P~vvKp~  131 (246)
                      +++.++.||..+|++|+++|||+|++..                           ..+.+.+++.++++++|||+||||.
T Consensus       157 ~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~  236 (540)
T 3glk_A          157 EAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKAS  236 (540)
T ss_dssp             HHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEET
T ss_pred             HHHHHhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEEC
Confidence            9999999999999999999999999752                           1178899999999999999999999


Q ss_pred             cCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       132 ~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .|+||+|++++++.+|+.++++.+....    .+..++||+||++++|++|++++|+.+
T Consensus       237 ~ggGG~Gv~iv~~~~eL~~a~~~~~~~~----~~~~vlVEe~I~g~rei~V~vl~d~~G  291 (540)
T 3glk_A          237 EGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIFLMKLAQHARHLEVQILADQYG  291 (540)
T ss_dssp             TCC----EEEECSTTTHHHHHHHHHHHS----TTCCEEEEECCSSEEEEEEEEEECTTS
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCCC
Confidence            9999999999999999999998876532    246899999999559999999998643

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=100.00  E-value=8.3e-32  Score=235.35  Aligned_cols=190  Identities=40%  Similarity=0.735  Sum_probs=173.7

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +|+++.++++++.++||+++.+++.....+|.+.+.++++++++++|+|+|++++.+|+..+++.+++.|++++|+++++
T Consensus        34 ~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~  113 (446)
T 3ouz_A           34 CVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEA  113 (446)
T ss_dssp             EEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHH
T ss_pred             EEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHH
Confidence            35778899999999999999887777778899999999999999999999999998999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +.+++||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.+++..+...+.
T Consensus       114 ~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~  193 (446)
T 3ouz_A          114 MNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAM  193 (446)
T ss_dssp             HHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999742357899999999999999999999999999999999999999999999887766


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++..+++|+||++++|+++++++++.+
T Consensus       194 ~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g  223 (446)
T 3ouz_A          194 TAFGDGTMYMEKYIQNPRHIEVQVIGDSFG  223 (446)
T ss_dssp             HHHSCCCEEEEECCSSCEEEEEEEEECTTS
T ss_pred             HhcCCCCEEEEeCCCCCcEEEEEEEEcCCC
Confidence            666678899999999558999999988753

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.98  E-value=1.8e-32  Score=249.14  Aligned_cols=190  Identities=61%  Similarity=0.953  Sum_probs=114.1

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +||+|.|+++++.++||+++.+++.....+|++.+.++++++++++|+|+|++|+++|+..+++.+++.|++++|+++++
T Consensus        30 av~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~a  109 (681)
T 3n6r_A           30 AIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGA  109 (681)
T ss_dssp             CEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHH
T ss_pred             EEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHHHHHhCcCEEEECCCccccCHHHHHHHHHcCCceECCCHHH
Confidence            47889999999999999999998877778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|+++++|.+|+.++++.+...+.
T Consensus       110 i~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~  189 (681)
T 3n6r_A          110 IEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAA  189 (681)
T ss_dssp             HHHTTSHHHHHHHHHTTTCCCCCC--------------------------------------------------------
T ss_pred             HHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999754467889999999999999999999999999999999999999999998877665


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++..++||+||++++|+++++++|+.+
T Consensus       190 ~~fg~~~vlvEe~I~g~rei~V~v~~d~~G  219 (681)
T 3n6r_A          190 NSFGDDRIFIEKFVTQPRHIEIQVLCDSHG  219 (681)
T ss_dssp             -------------CCSCEEEEEEEECCSSS
T ss_pred             HhCCCCcEEEEeccCCCcEEEEEEEEeCCC
Confidence            566678899999999668999999998754

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}

Probab=99.97  E-value=9.7e-30  Score=222.56  Aligned_cols=187  Identities=42%  Similarity=0.753  Sum_probs=165.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++++.++++++.++||+.+.+++.....+|.+.+.++++++++++|+|++++++.+|+..+++.+++.|++++|++.+++
T Consensus        30 v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~  109 (451)
T 2vpq_A           30 IYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSI  109 (451)
T ss_dssp             EEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHH
T ss_pred             EecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHH
Confidence            45667788899999999998876666678899999999999999999999998888888888999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++.+++++++||+||||..++||+|+.++++.+|+.++++.+......
T Consensus       110 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~  189 (451)
T 2vpq_A          110 QKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQT  189 (451)
T ss_dssp             HHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999996422578999999999999999999999999999999999999999999887765444


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecc
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      .+++..++||+||++++|+++.+++++
T Consensus       190 ~~~~~~~lvEe~i~g~~e~~v~v~~~~  216 (451)
T 2vpq_A          190 AFGNGGLYMEKFIENFRHIEIQIVGDS  216 (451)
T ss_dssp             HHSCCCEEEEECCCSEEEEEEEEEECT
T ss_pred             hcCCCcEEEEEecCCCeEEEEEEEEcC
Confidence            455678999999995589999999875

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=99.97  E-value=1.4e-29  Score=221.60  Aligned_cols=186  Identities=46%  Similarity=0.820  Sum_probs=164.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++++.++.+++.++||+.+.+++. ...+|.+.+.++++++++++|+|++++|+.+|+..+++.+++.|++++|++++++
T Consensus        31 v~~~~~~~~~~~~~ad~~~~~~p~-~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~  109 (451)
T 1ulz_A           31 IYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVI  109 (451)
T ss_dssp             EECGGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHHHHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHH
T ss_pred             EechhhcccchhhhCcEEEEcCCC-cccccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHH
Confidence            456777889999999999988654 5557888999999999999999999998888888888999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++.+++++++||+||||..++||+|++++++.+|+.++++.+...+..
T Consensus       110 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~  189 (451)
T 1ulz_A          110 ELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEK  189 (451)
T ss_dssp             HHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999996412478999999999999999999999999999999999999999999888765444


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecc
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      .+++..++||+||++++|+++.++++.
T Consensus       190 ~~~~~~~lvEe~i~g~~e~~v~v~~~~  216 (451)
T 1ulz_A          190 AFGRGDLLLEKFIENPKHIEYQVLGDK  216 (451)
T ss_dssp             TTSCCCEEEEECCCSCEEEEEEEEECT
T ss_pred             hcCCCeEEEEEcccCCeEEEEEEEEcC
Confidence            555678999999996589999999875

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...

Probab=99.97  E-value=1.3e-29  Score=221.65  Aligned_cols=187  Identities=47%  Similarity=0.779  Sum_probs=164.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++++.++++++.++||+.+.+++.....+|.+.+.++++++++++|+|++++|+.+|+..+++.+++.|++++|++++++
T Consensus        31 v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~  110 (449)
T 2w70_A           31 VHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETI  110 (449)
T ss_dssp             EEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHH
T ss_pred             EeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHcCCceECCCHHHH
Confidence            45667788899999999998865556668899999999999999999999998888888888999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHH-HHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC-VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~-~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++ .+++++++||+|+||..++||+|+.+++|.+|+.++++.+...+.
T Consensus       111 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~  190 (449)
T 2w70_A          111 RLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAK  190 (449)
T ss_dssp             HHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999641246788888 888899999999999999999999999999999999988776544


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ..+++..++||+||++++|+++.++++.
T Consensus       191 ~~~~~~~~lvEe~i~g~~e~~v~~~~~~  218 (449)
T 2w70_A          191 AAFSNDMVYMEKYLENPRHVEIQVLADG  218 (449)
T ss_dssp             HHHSCCCEEEEECCSSCEEEEEEEEECT
T ss_pred             hhcCCCcEEEEeccCCCeEEEEEEEEcC
Confidence            4455678999999996689999999874

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}

Probab=99.97  E-value=5.9e-29  Score=218.16  Aligned_cols=188  Identities=40%  Similarity=0.724  Sum_probs=164.3

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcC-CCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAA-QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ++++.+..+++.++||+.+.+++...+ .+|.+.+.++++++++++|+|++++|+.+|+..+++.+++.|++++|+++++
T Consensus        35 v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~  114 (461)
T 2dzd_A           35 IYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENH  114 (461)
T ss_dssp             EECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHH
T ss_pred             EECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCEEECCCHHH
Confidence            456667778899999999988754232 4578899999999999999999999888888888899999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +.+++||..++++|+++|||+|+++...+.+.+++.+++++++||+|+||..++||+|++++++.+|+.++++.+...+.
T Consensus       115 ~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~  194 (461)
T 2dzd_A          115 LDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAK  194 (461)
T ss_dssp             HHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHH
T ss_pred             HHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999642247899999999999999999999999999999999999999999998876544


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ..+++..++||+||++++|+++.+++++.
T Consensus       195 ~~~~~~~~lvEe~i~g~~e~~v~v~~~~~  223 (461)
T 2dzd_A          195 AAFGSDEVYVEKLIENPKHIEVQILGDYE  223 (461)
T ss_dssp             HHTSCCCEEEEECCCSCEEEEEEEEECTT
T ss_pred             hhcCCCcEEEEECCCCCeEEEEEEEEcCC
Confidence            44556789999999966899999998753

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A

Probab=99.97  E-value=2.4e-29  Score=224.94  Aligned_cols=181  Identities=32%  Similarity=0.536  Sum_probs=162.0

Q ss_pred             CCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcC--CeEeCCCHHHHH
Q psy10619          5 DPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG--VVFIGPTAECIR   82 (246)
Q Consensus         5 d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g--~~~~g~~~~~~~   82 (246)
                      |.++++++.++||+++.+|+.....+|.+.+.++++++++++|+|++++|+++|+..+...+++.|  ++++|++.+++.
T Consensus        90 D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~  169 (554)
T 1w96_A           90 DLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMR  169 (554)
T ss_dssp             HHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHH
T ss_pred             ccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCCCHHHHH
Confidence            456889999999999999876667789999999999999999999999998889888888999999  999999999999


Q ss_pred             HhcCHHHHHHHHHHhCCCCCCCCcc------------------------ccCCHHHHHHHHHHhCCcEEEEeccCCCCce
Q psy10619         83 GMGDKLESKKLAKEAGVNIIPGFNG------------------------IIRDADHCVEIARDIGYPVMIKASAGGGGKG  138 (246)
Q Consensus        83 ~~~dK~~~~~~l~~~gip~p~~~~~------------------------~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~g  138 (246)
                      +++||..++++|+++|||+|++...                        .+.+.+++.+++++++||+||||..++||+|
T Consensus       170 ~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~G  249 (554)
T 1w96_A          170 SLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKG  249 (554)
T ss_dssp             HSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTT
T ss_pred             HHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCce
Confidence            9999999999999999999997521                        1378899988889999999999999999999


Q ss_pred             eEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        139 MRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       139 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ++++++.+|+..+++.+....    ....++||+||++++|+++++++++.
T Consensus       250 v~~v~~~~el~~a~~~~~~~~----~~~~vlvEe~i~g~~e~sv~vl~d~~  296 (554)
T 1w96_A          250 IRQVEREEDFIALYHQAANEI----PGSPIFIMKLAGRARHLEVQLLADQY  296 (554)
T ss_dssp             EEEECSHHHHHHHHHHHHHHS----TTCCEEEEECCCSCEEEEEEEEECTT
T ss_pred             EEEECCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCC
Confidence            999999999999998876531    24689999999977899999999864

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.96  E-value=7.3e-30  Score=243.01  Aligned_cols=189  Identities=39%  Similarity=0.739  Sum_probs=110.7

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +||++.|+++++.++||+++.+++.....+|++.+.++++++++++|+|++++++++|+..+++.+++.|++++|+++++
T Consensus        59 aV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~ea  138 (1236)
T 3va7_A           59 AVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDA  138 (1236)
T ss_dssp             EEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHH
T ss_pred             EEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHH
Confidence            46889999999999999999998777778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      +.++.||..+|++|+++|||+|+++ ..+.+.+++.++++++|||+||||..++||+|+++++|.+|+.++++.+...+.
T Consensus       139 i~~~~DK~~ak~ll~~aGIPvpp~~-~~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~  217 (1236)
T 3va7_A          139 IRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGK  217 (1236)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCCC---------------------------------------------------------
T ss_pred             HHHhcCHHHHHHHHHHcCCCCCCee-EecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999964 367889999999999999999999999999999999999999999988776544


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++..++||+||++++|++|++++|+.+
T Consensus       218 ~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g  247 (1236)
T 3va7_A          218 SYFGDAGVFMERFVNNARHVEIQMMGDGFG  247 (1236)
T ss_dssp             ---------------CCEEEEEEEEEESSS
T ss_pred             hccCCCcEEEeeccCCCeEEEEEEEecCCc
Confidence            445567899999999559999999998764

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.96  E-value=1.5e-29  Score=240.33  Aligned_cols=190  Identities=41%  Similarity=0.735  Sum_probs=158.8

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCc-CCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE   79 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~   79 (246)
                      +|+++.|..+.+.++||+++.+|+... ..+|++.+.++++++++++|+|+|++|+++|+..+++.+++.|++++|++++
T Consensus        32 av~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~e  111 (1150)
T 3hbl_A           32 AIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLE  111 (1150)
T ss_dssp             EEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHH
T ss_pred             EEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHH
Confidence            467889999999999999999986533 3679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      ++.++.||..++++|+++|||+|+++...+.+.+++.++++++|||+||||..|+||+|++++++.+|+.+++..+...+
T Consensus       112 ai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a  191 (1150)
T 3hbl_A          112 HLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEA  191 (1150)
T ss_dssp             HHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSC
T ss_pred             HHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999976335788888888888999999999999999999999999999999998765433


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ...+++..++||+||++.+|++|++++|+.+
T Consensus       192 ~~~fg~~~vlVEeyI~G~reieV~vl~d~~G  222 (1150)
T 3hbl_A          192 EKSFGNSEVYIERYIDNPKHIEVQVIGDEHG  222 (1150)
T ss_dssp             C------CBEEECCCSSCEEEEEEEEECSSS
T ss_pred             HhhcCCCcEEEEEccCCCcEEEEEEEEeCCC
Confidence            3334467899999999558999999998754

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=99.96  E-value=3.8e-29  Score=238.03  Aligned_cols=190  Identities=35%  Similarity=0.640  Sum_probs=110.2

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCC-------CcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeE
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPP-------VAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVF   73 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~   73 (246)
                      +|+++.|..+++.++||+++.+++.       ....+|++.+.++++++++++|+|+|++|+++|+..+++.|++.|+++
T Consensus        42 av~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~  121 (1165)
T 2qf7_A           42 AIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIF  121 (1165)
T ss_dssp             EEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEE
T ss_pred             EEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHHHcCCce
Confidence            3677888888999999999999764       233568899999999999999999999999999998999999999999


Q ss_pred             eCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHH
Q psy10619         74 IGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFK  153 (246)
Q Consensus        74 ~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~  153 (246)
                      +|++++++.++.||..++++|+++|||+|+++...+.+.+++.++++++|||+||||..++||+|+++++|.+|+.++++
T Consensus       122 iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~  201 (1165)
T 2qf7_A          122 IGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVT  201 (1165)
T ss_dssp             SSCCHHHHHHHHSHHHHHHHHHHTTCCBC---------------------------------------------------
T ss_pred             ECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHH
Confidence            99999999999999999999999999999974224678888888889999999999999999999999999999999998


Q ss_pred             HHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        154 LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       154 ~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+...+...+++..++||+||++|+|++|++++|+.+
T Consensus       202 ~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G  238 (1165)
T 2qf7_A          202 EAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHG  238 (1165)
T ss_dssp             ------------------CCCSSEEEEEEEEEECTTS
T ss_pred             HHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCC
Confidence            8766544445567899999999889999999998754

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=99.94  E-value=9.5e-26  Score=194.51  Aligned_cols=166  Identities=26%  Similarity=0.375  Sum_probs=140.5

Q ss_pred             CCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhc
Q psy10619          6 PCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMG   85 (246)
Q Consensus         6 ~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~   85 (246)
                      .++++++.++||+++.++       +.+.+.++++++++++|+|+++ ++..+...+++.+++.|+  +|++++++.+++
T Consensus        39 ~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~~d~v~~~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~  108 (403)
T 4dim_A           39 PNAHKPCLNLADEISYMD-------ISNPDEVEQKVKDLNLDGAATC-CLDTGIVSLARICDKENL--VGLNEEAAIMCG  108 (403)
T ss_dssp             SSCCHHHHHHCSEEEECC-------TTCHHHHHHHTTTSCCSEEECC-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHH
T ss_pred             CCCCCcchhhCCeEEEec-------CCCHHHHHHHHHHcCCCEEEeC-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHh
Confidence            456889999999999874       4678999999999999999986 444455567788899998  489999999999


Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      ||..++++|+++|||+|++.  .+.+.+++.+++++++||+|+||..++||+|++++++.+|+.+++..+...    ...
T Consensus       109 dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~----~~~  182 (403)
T 4dim_A          109 DKYKMKEAFKKYNVNTARHF--VVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNL----TKR  182 (403)
T ss_dssp             CHHHHHHHHHHHTCCCCCEE--CCCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHH----CSS
T ss_pred             CHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc----CcC
Confidence            99999999999999999975  688999999999999999999999999999999999999999999887653    224


Q ss_pred             CceEEEecccCcceEEEEeeecc
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ..+++|+||+ |.|+++.++..+
T Consensus       183 ~~~lvEe~i~-g~e~sv~~~~~~  204 (403)
T 4dim_A          183 DYCIVEEFIE-GYEFGAQAFVYK  204 (403)
T ss_dssp             SCCEEEECCC-SEEEEEEEEEET
T ss_pred             CcEEEEEccC-CcEEEEEEEEEC
Confidence            6799999999 899999988643

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=9.9e-26  Score=197.65  Aligned_cols=179  Identities=16%  Similarity=0.198  Sum_probs=148.9

Q ss_pred             CcCCCCC--CChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEeCCC
Q psy10619          2 LFPDPCV--FQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFIGPT   77 (246)
Q Consensus         2 v~~d~~~--~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~g~~   77 (246)
                      |+++.|.  ..++.+.||+.+.+++......+...+.++++++++++|+|+|..    |+  ..+++.+++.|++  |++
T Consensus        57 v~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~s----E~~l~~~a~~~e~~Gi~--g~~  130 (474)
T 3vmm_A           57 VIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTNN----ELFIAPMAKACERLGLR--GAG  130 (474)
T ss_dssp             EEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEESC----GGGHHHHHHHHHHTTCC--CSC
T ss_pred             EEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEECC----cccHHHHHHHHHHcCCC--CCC
Confidence            5665554  567799999999886544433345668999999999999999964    55  5788899999998  899


Q ss_pred             HHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHH
Q psy10619         78 AECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQ  157 (246)
Q Consensus        78 ~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~  157 (246)
                      ++++.+++||..++++|+++|||+|++.  .+.+.+++.++++++|||+|+||..++||+|+.+++|.+|+.++++.+..
T Consensus       131 ~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~  208 (474)
T 3vmm_A          131 VQAAENARDKNKMRDAFNKAGVKSIKNK--RVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVND  208 (474)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTTSCCCCEE--EECSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHH
T ss_pred             HHHHHHhhCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHH
Confidence            9999999999999999999999999975  78999999999999999999999999999999999999999999988766


Q ss_pred             HHHh-------hcCCCceEEEecccCcce------------EEEE-eeeccee
Q psy10619        158 EAAA-------SFGDDRILVEKFIKNPRH------------IEIQ-GTTYKFL  190 (246)
Q Consensus       158 ~~~~-------~~~~~~~lve~~i~~g~e------------~~v~-v~~d~~~  190 (246)
                      ....       .+ ...+|||+||+ |.|            +++. ++.++..
T Consensus       209 ~~~~~~~~~a~~~-~~~vlVEe~I~-G~e~~~~q~~~~~~e~sv~~v~~dg~~  259 (474)
T 3vmm_A          209 YLKSINVPKAVTF-EAPFIAEEFLQ-GEYGDWYQTEGYSDYISIEGIMADGEY  259 (474)
T ss_dssp             HHTTSCCCTTCCC-SCSEEEEECCC-BCHHHHCSSSSSCSEEEEEEEEETTEE
T ss_pred             HHhhccccccccC-CCeEEEEeCCC-CceeeeeecccccceeEEEEEEECCeE
Confidence            4432       12 36899999999 655            8886 4445543

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=99.93  E-value=7e-25  Score=188.35  Aligned_cols=174  Identities=19%  Similarity=0.266  Sum_probs=145.0

Q ss_pred             cCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619          3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR   82 (246)
Q Consensus         3 ~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~   82 (246)
                      ..|.+++.++..++|+.+.++       |.+.+.++++++++++|+|+++++...  ....+.+++.|++ ++++++++.
T Consensus        39 ~~~~~~~~~~~~~~d~~~~~~-------~~d~~~l~~~~~~~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~  108 (391)
T 1kjq_A           39 AVDRYADAPAMHVAHRSHVIN-------MLDGDALRRVVELEKPHYIVPEIEAIA--TDMLIQLEEEGLN-VVPCARATK  108 (391)
T ss_dssp             EEESSTTCGGGGGSSEEEECC-------TTCHHHHHHHHHHHCCSEEEECSSCSC--HHHHHHHHHTTCE-ESSCHHHHH
T ss_pred             EEECCCCCchhhhccceEECC-------CCCHHHHHHHHHHcCCCEEEECCCcCC--HHHHHHHHhCCCC-cCCCHHHHH
Confidence            345667788999999988764       467899999999999999999886433  3456778899994 689999999


Q ss_pred             HhcCHHHHHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         83 GMGDKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        83 ~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      +++||..++++| +++|||+|++.  .+.+.+++.+++++++||+|+||..++||+|+.++++.+|+.++++.+......
T Consensus       109 ~~~dK~~~~~~l~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~  186 (391)
T 1kjq_A          109 LTMNREGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA  186 (391)
T ss_dssp             HHHSHHHHHHHHHTTSCCCBCCEE--EESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGG
T ss_pred             HhhCHHHHHHHHHHhCCCCCCCee--eeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhccc
Confidence            999999999999 89999999965  688999999999999999999999999999999999999999999887643211


Q ss_pred             hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                        ....++||+||++|.|+++.++.++.+
T Consensus       187 --~~~~~lvEe~i~~g~E~sv~~~~~~~g  213 (391)
T 1kjq_A          187 --GAGRVIVEGVVKFDFEITLLTVSAVDG  213 (391)
T ss_dssp             --GCCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred             --CCCCEEEEEecCCCeEEEEEEEEeCCC
Confidence              246799999999889999999987544

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=99.93  E-value=5.1e-25  Score=191.86  Aligned_cols=152  Identities=20%  Similarity=0.276  Sum_probs=134.1

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN  106 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~  106 (246)
                      ++.+.+.++++++++++|+|+++.    |..   .+++.+++.|++++|++.+++.+++||..++++|+++|||+|++. 
T Consensus        68 ~~~d~~~l~~~a~~~~id~vv~g~----E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~-  142 (442)
T 3lp8_A           68 DINSTIEVIQVCKKEKIELVVIGP----ETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYG-  142 (442)
T ss_dssp             CTTCHHHHHHHHHHTTCCEEEECS----HHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEE-
T ss_pred             CcCCHHHHHHHHHHhCCCEEEECC----cHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEE-
Confidence            457899999999999999999875    333   367789999999999999999999999999999999999999965 


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEEe
Q psy10619        107 GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQG  184 (246)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~v  184 (246)
                       .+++.+++.+++++++||+|+||..+++|+|+++++|.+|+.++++.+...  ..++  ...++||+||+ |.|+++.+
T Consensus       143 -~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~--~~~g~~~~~vlvEe~i~-G~E~sv~~  218 (442)
T 3lp8_A          143 -YFVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVH--HKFGEAGCAIIIEEFLE-GKEISFFT  218 (442)
T ss_dssp             -EESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCC-SEEEEEEE
T ss_pred             -EECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhh--cccCCCCCeEEEEEeec-CcEEEEEE
Confidence             789999999999999999999999999999999999999999999887631  1121  25799999999 89999999


Q ss_pred             eeccee
Q psy10619        185 TTYKFL  190 (246)
Q Consensus       185 ~~d~~~  190 (246)
                      +.|+..
T Consensus       219 ~~dg~~  224 (442)
T 3lp8_A          219 LVDGSN  224 (442)
T ss_dssp             EEESSC
T ss_pred             EECCCe
Confidence            988754

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=99.92  E-value=1.7e-24  Score=188.05  Aligned_cols=158  Identities=18%  Similarity=0.192  Sum_probs=135.4

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      ++.+.+.++++++++++|+++++.+... ...+++.|++.|++++|++.+++.++.||..++++|+++|||+|++.  .+
T Consensus        52 ~~~d~~~l~~~a~~~~id~vv~g~e~~l-~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~--~~  128 (431)
T 3mjf_A           52 AATDIAGLLAFAQSHDIGLTIVGPEAPL-VIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQ--NF  128 (431)
T ss_dssp             CTTCHHHHHHHHHHTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEE--EE
T ss_pred             CcCCHHHHHHHHHHhCcCEEEECCchHH-HHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeE--ee
Confidence            4578899999999999999998863210 02467889999999999999999999999999999999999999965  78


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ++.+++.+++++++||+||||..+++|+||.+++|.+|+.++++.+............++||+|++ |.|+++.++.|+.
T Consensus       129 ~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~  207 (431)
T 3mjf_A          129 TDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD-GEEASFIVMVDGE  207 (431)
T ss_dssp             SCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred             CCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence            999999999999999999999999999999999999999999988763211111135899999999 8999999998876


Q ss_pred             ee
Q psy10619        190 LI  191 (246)
Q Consensus       190 ~v  191 (246)
                      .+
T Consensus       208 ~~  209 (431)
T 3mjf_A          208 NV  209 (431)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=99.92  E-value=1.7e-24  Score=188.37  Aligned_cols=171  Identities=18%  Similarity=0.237  Sum_probs=137.1

Q ss_pred             cCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619          3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR   82 (246)
Q Consensus         3 ~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~   82 (246)
                      ..|.+++.++..++|+.+.++       +.+.+.++++++++++|+|+++++...  ..+++.+++.|+ .++++++++.
T Consensus        47 ~v~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~~d~V~~~~e~~~--~~~~~~l~~~gi-~~~~~~~~~~  116 (433)
T 2dwc_A           47 AVDRYANAPAMQVAHRSYVGN-------MMDKDFLWSVVEREKPDAIIPEIEAIN--LDALFEFEKDGY-FVVPNARATW  116 (433)
T ss_dssp             EEESSTTCHHHHHSSEEEESC-------TTCHHHHHHHHHHHCCSEEEECSSCSC--HHHHHHHHHTTC-CBSSCHHHHH
T ss_pred             EEECCCCChhhhhcceEEECC-------CCCHHHHHHHHHHcCCCEEEECcccCC--HHHHHHHHhcCC-eeCCCHHHHH
Confidence            345667778999999988764       567899999999999999999986533  355677889999 5689999999


Q ss_pred             HhcCHHHHHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         83 GMGDKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        83 ~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      +++||..++++| +++|||+|++.  .+.+.+++.+++++++||+|+||..++||+|+.+++|.+|+.++++.+......
T Consensus       117 ~~~dK~~~k~~l~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~  194 (433)
T 2dwc_A          117 IAMHRERLRETLVKEAKVPTSRYM--YATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARG  194 (433)
T ss_dssp             HHHCHHHHHHHHHHTSCCCCCCEE--EESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC-------
T ss_pred             HhhCHHHHHHHHHHhcCCCCCCee--EeCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccc
Confidence            999999999999 89999999965  688999999999999999999999999999999999999999999876542111


Q ss_pred             hcCCCceEEEecccCcceEEEEeeec
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                        ....++||+||++|.|+++.++.+
T Consensus       195 --~~~~~lvEe~i~~g~E~sv~~~~~  218 (433)
T 2dwc_A          195 --SAEKIIVEEHIDFDVEVTELAVRH  218 (433)
T ss_dssp             ----CCEEEEECCCCSEEEEECCEEE
T ss_pred             --CCCCEEEEccCCCCeeEEEEEEec
Confidence              246799999999889999999874

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=99.92  E-value=3.1e-24  Score=183.05  Aligned_cols=164  Identities=20%  Similarity=0.304  Sum_probs=135.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++.|.+++.++..+||. +..       ++.+.+.+++++  +++|+|+++++..  ...+.+.+++.|  ++|++.+++
T Consensus        26 ~~~~~~~~~~~~~~a~~-~~~-------~~~d~~~l~~~~--~~~d~v~~~~e~~--~~~~~~~l~~~g--~~g~~~~~~   91 (369)
T 3aw8_A           26 RFLDPSPEACAGQVGEL-VVG-------EFLDEGALLRFA--EGLALVTYEFENV--PVEAARRLEGRL--PLYPPAKAL   91 (369)
T ss_dssp             EEEESCTTCGGGGTSEE-EEC-------CTTCHHHHHHHH--TTCSEEEECCTTC--CHHHHHHHHHHS--CBSSCHHHH
T ss_pred             EEEeCCCCChHHHhhce-Eec-------CCCCHHHHHHHH--hCCCEEEECCCCc--CHHHHHHHHHcC--CcCCCHHHH
Confidence            34566677788889998 543       467889999999  6899999887653  356677888888  689999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..++++|+++|||+|++.  .+++.+++.+++++++||+|+||..++ +|+|+++++|.+|+.++++.+     
T Consensus        92 ~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~-----  164 (369)
T 3aw8_A           92 EVAQDRLREKTFFQGLGVPTPPFH--PVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL-----  164 (369)
T ss_dssp             HHHTCHHHHHHHHHHHTCCCCCEE--EESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTT-----
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCce--eeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc-----
Confidence            999999999999999999999975  688999999888899999999999999 999999999999999888664     


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                         +...++||+||++|+|+++.++.++.
T Consensus       165 ---~~~~~lvEe~i~~g~e~sv~~~~d~~  190 (369)
T 3aw8_A          165 ---GGRGLILEGFVPFDREVSLLAVRGRT  190 (369)
T ss_dssp             ---CSSSEEEEECCCCSEEEEEEEEECTT
T ss_pred             ---CCCcEEEEEcCCCCEEEEEEEEECCC
Confidence               24689999999988999999999753

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A

Probab=99.91  E-value=2.2e-24  Score=187.13  Aligned_cols=152  Identities=22%  Similarity=0.337  Sum_probs=132.6

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN  106 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~  106 (246)
                      ++.+.+.++++++++++|+|+++.    |+.   .+++.+++.|++++|++++++.+++||..++++|+++|||+|++. 
T Consensus        47 ~~~d~~~l~~~~~~~~~d~v~~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~-  121 (424)
T 2yw2_A           47 SPTDVEKLAEFAKNEGVDFTIVGP----EAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYE-  121 (424)
T ss_dssp             CTTCHHHHHHHHHHHTCSEEEECS----HHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEE-
T ss_pred             CcCCHHHHHHHHHHcCCCEEEECC----chHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeE-
Confidence            467889999999999999999875    333   356788899999999999999999999999999999999999975 


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEEe
Q psy10619        107 GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQG  184 (246)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~v  184 (246)
                       .+.+.+++.+++++++||+|+||..+++|+|+++++|.+|+.++++.+...  ..++  ...++||+||+ |.|+++.+
T Consensus       122 -~~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-g~E~sv~~  197 (424)
T 2yw2_A          122 -VFTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNK--KIFGKSSERVVIEEFLE-GEEASYIV  197 (424)
T ss_dssp             -EESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCC-SEEEEEEE
T ss_pred             -EECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCC-CcEEEEEE
Confidence             688999999999999999999999999999999999999999999877531  1121  25799999999 89999999


Q ss_pred             eeccee
Q psy10619        185 TTYKFL  190 (246)
Q Consensus       185 ~~d~~~  190 (246)
                      +.++..
T Consensus       198 ~~~G~~  203 (424)
T 2yw2_A          198 MINGDR  203 (424)
T ss_dssp             EEETTE
T ss_pred             EEcCCE
Confidence            987654

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}

Probab=99.91  E-value=9.4e-24  Score=182.86  Aligned_cols=150  Identities=19%  Similarity=0.244  Sum_probs=132.3

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN  106 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~  106 (246)
                      ++.+.+.++++++++++|+|+++.    |+.   .+++.+++.|++++|++.+++.+++||..++++|+++|||+|++. 
T Consensus        46 ~~~d~~~l~~~~~~~~~d~v~~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~-  120 (417)
T 2ip4_A           46 WNGDVEALADWALAEGIDLTLVGP----EAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYR-  120 (417)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEEECS----SHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEE-
T ss_pred             CccCHHHHHHHHHHcCCCEEEECC----chHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCee-
Confidence            357889999999999999999885    433   356778899999999999999999999999999999999999965 


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeee
Q psy10619        107 GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~  186 (246)
                       .+.+.+++.+++++++||+|+||..+++|+|+.++++.+|+.++++.+..   ..+ ...++||+||+ |.|+++.++.
T Consensus       121 -~~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~---~~~-~~~~lvEe~i~-g~E~sv~~~~  194 (417)
T 2ip4_A          121 -VFREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILN---RAE-GGEVVVEEYLE-GEEATVLALT  194 (417)
T ss_dssp             -EESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTT---SSS-CCCEEEEECCC-SCEEEEEEEE
T ss_pred             -eeCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHh---hcc-CCeEEEEECcc-CcEEEEEEEE
Confidence             68899999999999999999999999999999999999999999887641   122 26799999999 8999999998


Q ss_pred             ccee
Q psy10619        187 YKFL  190 (246)
Q Consensus       187 d~~~  190 (246)
                      ++..
T Consensus       195 ~G~~  198 (417)
T 2ip4_A          195 DGET  198 (417)
T ss_dssp             SSSC
T ss_pred             eCCE
Confidence            7654

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}

Probab=99.91  E-value=2.8e-24  Score=180.62  Aligned_cols=168  Identities=13%  Similarity=0.127  Sum_probs=118.0

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ++.|.++++++...+|+.+.++...+ ..  ..+.++++++++++|+|++..+... ....+.+.|+..|++++++++++
T Consensus        32 ~~~d~~~~~~~~~~~d~~~~~~~~~~-~~--~~~~l~~~~~~~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~  108 (331)
T 2pn1_A           32 STADCSPLASALYMADQHYIVPKIDE-VE--YIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAA  108 (331)
T ss_dssp             EEEESCTTCGGGGGSSSEEECCCTTS-TT--HHHHHHHHHHHHTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHH
T ss_pred             EEEeCCCcchhHHhhhceecCCCCCC-hh--HHHHHHHHHHHcCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHH
Confidence            45577888899999999988763222 22  3589999999999999998864211 11234567788899999999999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH--HHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA--RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE  158 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~--~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~  158 (246)
                      +.+++||..++++|+++|||+|+++    .+.+++.+++  +.++||+|+||..++||+|+.++++.+|+.+++..    
T Consensus       109 ~~~~~dK~~~~~~l~~~gip~p~~~----~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~----  180 (331)
T 2pn1_A          109 CELCFDKYTMYEYCLRQGIAHARTY----ATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK----  180 (331)
T ss_dssp             HHHHHBHHHHHHHHHHHTCCCCCEE----SSHHHHHHHHHTTSSCSCEEEEESBC-------------------------
T ss_pred             HHHhhCHHHHHHHHHHcCCCCCcEE----ecHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh----
Confidence            9999999999999999999999964    2466666665  36899999999999999999999999999887653    


Q ss_pred             HHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619        159 AAASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       159 ~~~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                            ...+++|+||+ |.|+++.++.+
T Consensus       181 ------~~~~lvee~i~-G~e~~v~~~~d  202 (331)
T 2pn1_A          181 ------NTDLIVQELLV-GQELGVDAYVD  202 (331)
T ss_dssp             --------CEEEEECCC-SEEEEEEEEEC
T ss_pred             ------CCCeEEEecCC-CcEEEEEEEEe
Confidence                  25799999999 79999999986

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}

Probab=99.91  E-value=1.7e-24  Score=187.94  Aligned_cols=178  Identities=13%  Similarity=0.152  Sum_probs=133.5

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      |+++.+..+.+...+|+++.++...+...+  .+.+.++++++++|+|++..+..  ....+.+.+.+|++  |++++++
T Consensus        34 v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~--~~~~~~~~~~~~id~V~~~~e~~--~~~~a~l~e~lglp--g~~~~~~  107 (425)
T 3vot_A           34 FYNSAEDFPGNLPAVERCVPLPLFEDEEAA--MDVVRQTFVEFPFDGVMTLFEPA--LPFTAKAAEALNLP--GLPFTTM  107 (425)
T ss_dssp             EEETTSCCCCSCTTEEEEEEECTTTCHHHH--HHHHHHHHHHSCCSEEECCCGGG--HHHHHHHHHHTTCS--SCCHHHH
T ss_pred             EECCCcccccCHhhccEEEecCCCCCHHHH--HHHHHHhhhhcCCCEEEECCchh--HHHHHHHHHHcCCC--CCCHHHH
Confidence            456666667788889999988643222222  35667778889999999875331  12345566778886  7999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH-
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA-  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~-  160 (246)
                      .+++||..+|++|+++|||+|++.  .+++.+++..  ..++||+||||..|+||+||++++|.+|+.++++.+..... 
T Consensus       108 ~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~--~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~  183 (425)
T 3vot_A          108 ENCRNKNKTRSILQQNGLNTPVFH--EFHTLADLEN--RKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQR  183 (425)
T ss_dssp             HHHHCHHHHHHHHHHTTCCCCCEE--EESSGGGGTT--CCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTS
T ss_pred             HHhhCHHHHHHHHHHCCCCCCcee--ccCcHHHHHH--hhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999965  6788877643  47899999999999999999999999999999988764321 


Q ss_pred             ----hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        161 ----ASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       161 ----~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                          ....+..+++|+|++ |.|++|.++.++..
T Consensus       184 ~~~~~~~~~~~~lvEe~i~-G~e~sv~~~~~~g~  216 (425)
T 3vot_A          184 DLNRFVHGKTGIVAEQFID-GPEFAIETLSIQGN  216 (425)
T ss_dssp             SHHHHHTTCCCEEEEECCC-SCEEEEEEEEETTE
T ss_pred             hhhhhccCCCcEEEEEEec-CcEEEEEEEEeCCc
Confidence                112356799999999 89999998875543

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=99.91  E-value=1e-23  Score=182.37  Aligned_cols=164  Identities=18%  Similarity=0.255  Sum_probs=140.7

Q ss_pred             cCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619          3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR   82 (246)
Q Consensus         3 ~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~   82 (246)
                      ..|.++++++..+||+.+..       +|.|.+.+.++++  ++|+|++.++  .....+.+.+++.  .+++++++++.
T Consensus        63 v~d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~~a~--~~D~V~~~~e--~~~~~~~~~l~~~--~~vgp~~~a~~  129 (419)
T 4e4t_A           63 VLDPDPASPAGAVADRHLRA-------AYDDEAALAELAG--LCEAVSTEFE--NVPAASLDFLART--TFVAPAGRCVA  129 (419)
T ss_dssp             EECSCTTCHHHHHSSEEECC-------CTTCHHHHHHHHH--HCSEEEECCT--TCCHHHHHHHHTT--SEESSCHHHHH
T ss_pred             EECCCCcCchhhhCCEEEEC-------CcCCHHHHHHHHh--cCCEEEEccC--cCCHHHHHHHHcc--CCcCCCHHHHH
Confidence            44788999999999998864       4678899999995  5999996653  3445677778777  47899999999


Q ss_pred             HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH----hCCcEEEEec-cCCCCceeEEeCCHHHHHHHHHHHHH
Q psy10619         83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD----IGYPVMIKAS-AGGGGKGMRIANNDQEAIEGFKLSSQ  157 (246)
Q Consensus        83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~----~~~P~vvKp~-~g~g~~gv~~v~~~~el~~~~~~~~~  157 (246)
                      +++||..+|++|+++|||+|++.  .+.+.+++.+++++    + ||+|+||. .|++|+|+++++|.+|+.++++.+  
T Consensus       130 ~~~dK~~~k~~l~~~Gip~p~~~--~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~--  204 (419)
T 4e4t_A          130 VAQDRIAEKRFIEASGVPVAPHV--VIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL--  204 (419)
T ss_dssp             HHTCHHHHHHHHHHTTCCBCCEE--EECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT--
T ss_pred             HhcCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc--
Confidence            99999999999999999999975  78999999888888    9 99999999 788999999999999999998764  


Q ss_pred             HHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        158 EAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       158 ~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                            ++..++||+||++++|+++.++++..+
T Consensus       205 ------~~~~~lvEe~i~~~~Eisv~v~~~~~G  231 (419)
T 4e4t_A          205 ------GGVPCVLEKRLPLKYEVSALIARGADG  231 (419)
T ss_dssp             ------TTCCEEEEECCCEEEEEEEEEEECTTS
T ss_pred             ------CCCcEEEeecCCCCeEEEEEEEEcCCC
Confidence                  257899999999789999999987543

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*

Probab=99.91  E-value=7.2e-24  Score=180.39  Aligned_cols=138  Identities=25%  Similarity=0.370  Sum_probs=124.2

Q ss_pred             HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHH----HHHH
Q psy10619         43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVE  117 (246)
Q Consensus        43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~----~~~~  117 (246)
                      ..++|+|++. +|..+|+..++..|+..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.+    ++.+
T Consensus        96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~  173 (364)
T 3i12_A           96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFI--TLTRTNRHAFSFAE  173 (364)
T ss_dssp             CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EEETTTGGGCCHHH
T ss_pred             cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEEccccchhhHHH
Confidence            3579999999 68888999999999999999999999999999999999999999999999975  566655    6777


Q ss_pred             HHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       118 ~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +.+.++||+||||..+++|.|+.++++.+|+..+++.++..      +..+|||+||+ |+|+++.+++++.
T Consensus       174 ~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~I~-G~E~~v~vl~~~~  238 (364)
T 3i12_A          174 VESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF------DHKVVVEQGIK-GREIECAVLGNDN  238 (364)
T ss_dssp             HHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred             HHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc------CCcEEEEcCcC-CeEEEEEEEeCCC
Confidence            78899999999999999999999999999999999887542      57899999999 7999999998764

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=99.91  E-value=2e-23  Score=179.87  Aligned_cols=164  Identities=16%  Similarity=0.223  Sum_probs=139.7

Q ss_pred             cCCCCCCChhhhccc--eeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          3 FPDPCVFQRHVKLAD--EAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         3 ~~d~~~~~~~~~~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ..| ++++++.++||  ..+..       +|.+.+.+.+++++  +|++++.++.  ....+.+.+++ |++ +++++++
T Consensus        52 ~~d-~~~~p~~~~ad~~~~~~~-------~~~d~~~l~~~a~~--~d~i~~e~e~--~~~~~l~~l~~-g~~-v~p~~~a  117 (403)
T 3k5i_A           52 VLD-ADNSPAKQISAHDGHVTG-------SFKEREAVRQLAKT--CDVVTAEIEH--VDTYALEEVAS-EVK-IEPSWQA  117 (403)
T ss_dssp             EEE-STTCTTGGGCCSSCCEES-------CTTCHHHHHHHHTT--CSEEEESSSC--SCHHHHHHHTT-TSE-ESSCHHH
T ss_pred             EEE-CCCCcHHHhccccceeec-------CCCCHHHHHHHHHh--CCEEEECCCC--CCHHHHHHHHc-CCc-cCcCHHH
Confidence            346 78899999999  44432       57888999999987  7888766533  23567788888 998 7899999


Q ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCCccccC--CHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHH
Q psy10619         81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIR--DADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQ  157 (246)
Q Consensus        81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~--~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~  157 (246)
                      +.+++||..++++|+++|||+|++.  .+.  +.+++.++++++|||+|+||..++ +|+|++++++.+|+.++++.+  
T Consensus       118 ~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~--  193 (403)
T 3k5i_A          118 IRTIQNKFNQKEHLRKYGIPMAEHR--ELVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL--  193 (403)
T ss_dssp             HHHHTSHHHHHHHHHTTTCCBCCEE--EESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT--
T ss_pred             HHHhcCHHHHHHHHHHCCcCCCCEE--EEcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc--
Confidence            9999999999999999999999975  567  999999999999999999999987 999999999999999988764  


Q ss_pred             HHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        158 EAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       158 ~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                            +...++||+||++++|+++.+++++.+
T Consensus       194 ------~~~~~lvEe~i~~~~E~sv~v~~~~~g  220 (403)
T 3k5i_A          194 ------KDRPLYAEKWAYFKMELAVIVVKTKDE  220 (403)
T ss_dssp             ------TTSCEEEEECCCEEEEEEEEEEECSSC
T ss_pred             ------CCCcEEEecCCCCCeEEEEEEEEcCCC
Confidence                  246899999999789999999988654

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A

Probab=99.91  E-value=2.1e-23  Score=182.42  Aligned_cols=155  Identities=19%  Similarity=0.311  Sum_probs=129.1

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      ++.+.+.++++++++++|+|+++.+... ...+++.+++.|++++|++.+++.+++||..++++|+++|||+|++.  .+
T Consensus        68 ~~~d~~~l~~~~~~~~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~  144 (451)
T 2yrx_A           68 DELDIEALVQFAKQQAIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHA--AF  144 (451)
T ss_dssp             CTTCHHHHHHHHHHTTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EE
T ss_pred             CCCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeE--EE
Confidence            4568899999999999999998753210 01356778899999999999999999999999999999999999965  68


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEEeeec
Q psy10619        110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      .+.+++.+++++++||+|+||..+++|+|+.+++|.+|+.++++.+...  ..++  ...++||+||+ |.|+++.++.+
T Consensus       145 ~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-G~E~sv~~~~d  221 (451)
T 2yrx_A          145 TSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVD--GQFGTAGSQVVIEEYLE-GEEFSFMAFVN  221 (451)
T ss_dssp             SCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHH--SCCBTTBCCEEEEECCC-SEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhc--cccCCCCCeEEEEECCc-CcEEEEEEEEc
Confidence            9999999999999999999999999999999999999999999887642  1122  26799999999 89999999987


Q ss_pred             cee
Q psy10619        188 KFL  190 (246)
Q Consensus       188 ~~~  190 (246)
                      +..
T Consensus       222 G~~  224 (451)
T 2yrx_A          222 GEK  224 (451)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            654

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*

Probab=99.91  E-value=3.2e-24  Score=186.09  Aligned_cols=155  Identities=17%  Similarity=0.246  Sum_probs=132.2

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII  109 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~  109 (246)
                      ++.+.+.++++++++++|+|+++.+... ...+++.+++.|++++|++.+++.+++||..++++|+++|||+|++.  .+
T Consensus        47 ~~~d~~~l~~~~~~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~  123 (422)
T 2xcl_A           47 EESDHAGLVSFAKQNQVGLTIVGPEVPL-IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYE--TF  123 (422)
T ss_dssp             CTTCHHHHHHHHHHTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEE--EE
T ss_pred             CcCCHHHHHHHHHHcCCCEEEECCcHHH-HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeE--EE
Confidence            4578899999999999999998753210 01456778899999999999999999999999999999999999965  68


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEEeeec
Q psy10619        110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      ++.+++.++++.++||+|+||..+++|+|+.++++.+|+..+++.+...  ..++  ...++||+||+ |.|+++.++.+
T Consensus       124 ~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-g~E~sv~~~~d  200 (422)
T 2xcl_A          124 TSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLED--EKFGDASASVVIEEYLS-GEEFSLMAFVK  200 (422)
T ss_dssp             SCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCC-SEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCc-CcEEEEEEEEc
Confidence            8999999999999999999999999999999999999999999876531  1111  26799999999 89999999987


Q ss_pred             cee
Q psy10619        188 KFL  190 (246)
Q Consensus       188 ~~~  190 (246)
                      +..
T Consensus       201 G~~  203 (422)
T 2xcl_A          201 GEK  203 (422)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            654

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=184.20  Aligned_cols=151  Identities=22%  Similarity=0.317  Sum_probs=128.3

Q ss_pred             CCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619         30 SYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN  106 (246)
Q Consensus        30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~  106 (246)
                      ++.+.+.++++++++++|+|+++.    |+.   .+++.+++.|++++|++++++.+++||..++++|+++|||+|++. 
T Consensus        73 ~~~d~~~l~~~~~~~~~d~V~~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~-  147 (452)
T 2qk4_A           73 SISDHTALAQFCKEKKIEFVVVGP----EAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWK-  147 (452)
T ss_dssp             CSSCHHHHHHHHHHHTCCEEEECS----SHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEE-
T ss_pred             CCCCHHHHHHHHHHcCCCEEEECC----cHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeE-
Confidence            467889999999999999999875    443   456778899999999999999999999999999999999999965 


Q ss_pred             cccCCHHHHHHHHHHhCCc-EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEE
Q psy10619        107 GIIRDADHCVEIARDIGYP-VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQ  183 (246)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~  183 (246)
                       .+.+.+++.+++++++|| +|+||..++||+|++++++.+|+.++++.+...  ..++  ...++||+||+ |.|+++.
T Consensus       148 -~~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-G~E~sv~  223 (452)
T 2qk4_A          148 -AFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQE--KAFGAAGETIVIEELLD-GEEVSCL  223 (452)
T ss_dssp             -EESSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC---------CCEEEEECCC-SEEEEEE
T ss_pred             -EECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCC-CCeEEEE
Confidence             688999999999999999 999999999999999999999999998876431  1121  36799999999 8999999


Q ss_pred             eeecce
Q psy10619        184 GTTYKF  189 (246)
Q Consensus       184 v~~d~~  189 (246)
                      ++.++.
T Consensus       224 ~~~dG~  229 (452)
T 2qk4_A          224 CFTDGK  229 (452)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            998765

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=99.90  E-value=5.8e-23  Score=176.36  Aligned_cols=164  Identities=16%  Similarity=0.293  Sum_probs=140.3

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++.|.++++++..+||..+..       +|.+.+.+.+++++  +|+|.+.+  ......+.+.+++.|+  ++++++++
T Consensus        41 i~~d~~~~~~~~~~ad~~~~~-------~~~d~~~l~~~~~~--~dvI~~~~--e~~~~~~~~~l~~~g~--~~~~~~~~  107 (389)
T 3q2o_A           41 AVLDPTKNSPCAQVADIEIVA-------SYDDLKAIQHLAEI--SDVVTYEF--ENIDYRCLQWLEKHAY--LPQGSQLL  107 (389)
T ss_dssp             EEEESSTTCTTTTTCSEEEEC-------CTTCHHHHHHHHHT--CSEEEESC--CCCCHHHHHHHHHHSC--CTTCSHHH
T ss_pred             EEEeCCCCCchHHhCCceEec-------CcCCHHHHHHHHHh--CCEeeecc--ccccHHHHHHHHhhCc--cCCCHHHH
Confidence            345778888999999998864       46788999999976  78885444  3344567788888886  78999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCC-CceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGG-GKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g-~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..++++|+++|||+|++.  .+.+.+++.++++++|||+|+||..+++ |+|++++++.+|+.++++.+.    
T Consensus       108 ~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----  181 (389)
T 3q2o_A          108 SKTQNRFTEKNAIEKAGLPVATYR--LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----  181 (389)
T ss_dssp             HHTTSHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----
Confidence            999999999999999999999975  7899999999999999999999999975 799999999999999987653    


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                          ...+|||+||++++|+++.++++.
T Consensus       182 ----~~~~lvEe~i~g~~E~~v~~~~~~  205 (389)
T 3q2o_A          182 ----AAECILEKWVPFEKEVSVIVIRSV  205 (389)
T ss_dssp             ----HSCEEEEECCCCSEEEEEEEEECT
T ss_pred             ----CCCEEEEecccCceEEEEEEEEcC
Confidence                367999999996599999999874

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*

Probab=99.90  E-value=6.3e-24  Score=181.81  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=123.7

Q ss_pred             HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHH----HHHH
Q psy10619         43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVE  117 (246)
Q Consensus        43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~----~~~~  117 (246)
                      ..++|+|+|. +|..+|+..++.+|+..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.+    ++.+
T Consensus       115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~  192 (386)
T 3e5n_A          115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFV--CFDRHTAAHADVDT  192 (386)
T ss_dssp             CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEE--EEEHHHHTTCCHHH
T ss_pred             cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcccchhhHHH
Confidence            4579999999 67778888999999999999999999999999999999999999999999975  566666    6777


Q ss_pred             HHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       118 ~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +.+.++||+||||..+++|.|+.++++.+|+.++++.++.     + +..+|||+||+ |+|++|.+++++.
T Consensus       193 ~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~-----~-~~~vlVEe~I~-G~E~~v~vl~~~~  257 (386)
T 3e5n_A          193 LIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA-----Y-DHKVLVEAAVA-GREIECAVLGNAV  257 (386)
T ss_dssp             HHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTT-----T-CSEEEEEECCC-SEEEEEEEECSSS
T ss_pred             HHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHh-----C-CCcEEEEcCCC-CeEEEEEEEeCCC
Confidence            7889999999999999999999999999999999987642     2 56899999999 8999999998865

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=99.90  E-value=7.4e-23  Score=194.84  Aligned_cols=173  Identities=24%  Similarity=0.295  Sum_probs=144.4

Q ss_pred             CCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEcccccc-CCCCH--HHHH--HHHHcCCeEeCCCH
Q psy10619          4 PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGF-LSENA--SFVS--RLKEEGVVFIGPTA   78 (246)
Q Consensus         4 ~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~-~~e~~--~~~~--~~~~~g~~~~g~~~   78 (246)
                      ++.+...++..+||+.+..|        .+.+.+.++++++++|+|+|++++ ...+.  .+.+  .|++.|++++|++.
T Consensus        49 ~~~~~~~~~~~~ad~~~i~p--------~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~  120 (1073)
T 1a9x_A           49 SNPATIMTDPEMADATYIEP--------IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA  120 (1073)
T ss_dssp             SCTTCGGGCGGGSSEEECSC--------CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCH
T ss_pred             CCcccccCChhhCcEEEECC--------CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCH
Confidence            33333447788999988543        478999999999999999998753 11111  1222  67889999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619         79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE  158 (246)
Q Consensus        79 ~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~  158 (246)
                      +++..+.||..++++|+++|+|+|++.  .+.+.+++.++++++|||+||||..++||+|+.+++|.+|+.+++......
T Consensus       121 ~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~  198 (1073)
T 1a9x_A          121 DAIDKAEDRRRFDVAMKKIGLETARSG--IAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL  198 (1073)
T ss_dssp             HHHHHHHSHHHHHHHHHHTTCCCCSEE--EESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999975  789999999999999999999999999999999999999999999876643


Q ss_pred             HHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        159 AAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       159 ~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                          ...+.+|||+||+|.+|+++++++|..+
T Consensus       199 ----~~~~~vlvEe~I~G~~E~~v~v~~d~~g  226 (1073)
T 1a9x_A          199 ----SPTKELLIDESLIGWKEYEMEVVRDKND  226 (1073)
T ss_dssp             ----CTTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred             ----CCCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence                2246899999999558999999997643

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}

Probab=99.90  E-value=4.5e-23  Score=176.14  Aligned_cols=137  Identities=20%  Similarity=0.317  Sum_probs=115.7

Q ss_pred             CCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhC-CCCCCCCccccCCH----HHHHHH
Q psy10619         45 RADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAG-VNIIPGFNGIIRDA----DHCVEI  118 (246)
Q Consensus        45 ~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~g-ip~p~~~~~~~~~~----~~~~~~  118 (246)
                      ++|++++.. |..+|+..++.+|+..|+|++|++..++.+++||..++++|+++| ||+|+++  .+.+.    +++.++
T Consensus       119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~--~~~~~~~~~~~~~~~  196 (383)
T 3k3p_A          119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYV--ALIEGEPLESKLAEV  196 (383)
T ss_dssp             TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEE--EEETTSCHHHHHHHH
T ss_pred             CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEE--EEeCccchhHHHHHH
Confidence            699999885 667899999999999999999999999999999999999999999 9999975  44443    466777


Q ss_pred             HHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        119 ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       119 ~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+.++||+||||..+++|.|+.++++.+|+.++++.++.     + +..+|||+||+ |+|++|.+++++..
T Consensus       197 ~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~-----~-~~~vlVEe~I~-G~E~~v~vl~d~~~  261 (383)
T 3k3p_A          197 EEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALK-----Y-DSRVLIEQGVD-AREIEVGILGNTDV  261 (383)
T ss_dssp             HHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHH-----H-CSEEEEEECCC-SEEEEEEEEESSSC
T ss_pred             HHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-----C-CCeEEEEcCCC-CeEEEEEEEeCCCe
Confidence            889999999999999999999999999999999988654     2 56899999999 89999999988643

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}

Probab=99.90  E-value=2.6e-23  Score=177.01  Aligned_cols=137  Identities=20%  Similarity=0.247  Sum_probs=117.6

Q ss_pred             hCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH----HHHH
Q psy10619         44 TRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH----CVEI  118 (246)
Q Consensus        44 ~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~----~~~~  118 (246)
                      .++|+|+|.. |..+|+..++..|+..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.++    +..+
T Consensus        97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~  174 (372)
T 3tqt_A           97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWH--TLSPRDATEGVYQRL  174 (372)
T ss_dssp             ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCE--EECTTSCCTTHHHHH
T ss_pred             cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EEechhhhhhHHHHH
Confidence            5799999884 6778999999999999999999999999999999999999999999999975  4555442    4566


Q ss_pred             HHHhCCc-EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        119 ARDIGYP-VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       119 ~~~~~~P-~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .+.++|| +||||..+++|.|+.++++.+|+..+++.++.     + +..+|||+||+ |+|++|.+++++.
T Consensus       175 ~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~-----~-~~~vlVEe~I~-G~E~~v~vl~~~~  239 (372)
T 3tqt_A          175 LDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR-----Y-DDRLMVEPRIR-GREIECAVLGNGA  239 (372)
T ss_dssp             HHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTT-----T-CSCEEEEECCC-SEEEEEEEEESSS
T ss_pred             HHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCCEEEECCCC-CEEEEEEEEeCCC
Confidence            7789999 99999999999999999999999999877542     2 56899999999 8999999999873

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=99.90  E-value=7.6e-23  Score=174.87  Aligned_cols=164  Identities=23%  Similarity=0.338  Sum_probs=136.2

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      +..|.++++++.++||+++..       +|.|.+.+.+++++  +|+|.+.++.  ........+++.+  .++++++++
T Consensus        39 iv~d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~~~~~--~dvi~~~~E~--~~~~~l~~l~~~~--~v~p~~~~~  105 (377)
T 3orq_A           39 VVLDPSEDCPCRYVAHEFIQA-------KYDDEKALNQLGQK--CDVITYEFEN--ISAQQLKLLCEKY--NIPQGYQAI  105 (377)
T ss_dssp             EEEESCTTCTTGGGSSEEEEC-------CTTCHHHHHHHHHH--CSEEEESSTT--SCHHHHHHHHHHS--CCTTTTHHH
T ss_pred             EEEECCCCChhhhhCCEEEEC-------CCCCHHHHHHHHHh--CCcceecccc--cCHHHHHHHhhhc--CCCCCHHHH
Confidence            345788889999999998875       36788999999987  8888665522  2234455565554  356899999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA  160 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~  160 (246)
                      .+++||..++++|+++|||+|++.  .+.+.+++.++++++|||+|+||..++ +|+|++++++.+|+.++++.+.    
T Consensus       106 ~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----  179 (377)
T 3orq_A          106 QLLQDRLTEKETLKSAGTKVVPFI--SVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE----  179 (377)
T ss_dssp             HHHHSHHHHHHHHHHTTCCBCCEE--EECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT----
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----
Confidence            999999999999999999999975  688889999999999999999999997 8999999999999999987753    


Q ss_pred             hhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        161 ASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                          ...+++|+||++.+|+++.++++.
T Consensus       180 ----~~~~ivEe~i~g~~E~sv~~~~~~  203 (377)
T 3orq_A          180 ----TSECVAEKYLNIKKEVSLTVTRGN  203 (377)
T ss_dssp             ----TSCEEEEECCCEEEEEEEEEEECG
T ss_pred             ----CCcEEEEccCCCCEEEEEEEEEeC
Confidence                377999999994489999999553

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}

Probab=99.89  E-value=1.7e-23  Score=177.61  Aligned_cols=144  Identities=22%  Similarity=0.262  Sum_probs=122.8

Q ss_pred             HHHHHHhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCC---HH
Q psy10619         38 IDAIRQTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRD---AD  113 (246)
Q Consensus        38 ~~~~~~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---~~  113 (246)
                      ....+..++|++++. +|+.+|+..++..|+..|+|++|+++.++.+|+||..+|++|+++|||+|++.  .+.+   ..
T Consensus        90 ~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~  167 (357)
T 4fu0_A           90 SDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSV--TFKRFNEEA  167 (357)
T ss_dssp             ---CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEE--EEEGGGHHH
T ss_pred             hhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--eecCCChHH
Confidence            344556789999988 57788999999999999999999999999999999999999999999999975  3333   23


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        114 HCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       114 ~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+.++.+++|||+||||+.+++|+|+.+++|.+++..++..+..      .+..+++|+||+ |+|+++.+++++..
T Consensus       168 ~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~------~~~~vlvE~~i~-G~e~~v~vl~~~~~  237 (357)
T 4fu0_A          168 AMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE------HDTEVIVEETIN-GFEVGCAVLGIDEL  237 (357)
T ss_dssp             HHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCC-SEEEEEEEEESSSE
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhc------cCCeEEEEEecC-CEEEEEEEEecCCc
Confidence            34566778999999999999999999999999999999877543      257899999999 99999999988755

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=99.89  E-value=2.5e-23  Score=179.92  Aligned_cols=149  Identities=19%  Similarity=0.182  Sum_probs=123.2

Q ss_pred             CHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCH
Q psy10619         33 NVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA  112 (246)
Q Consensus        33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~  112 (246)
                      +.+.++++++++++|+|+++.    |+..++..++..+. ++|++++++.+++||..++++|+++|||+|++.  .+++.
T Consensus        58 d~~~l~~~~~~~~~d~V~~~~----E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~  130 (412)
T 1vkz_A           58 PYEGEKTLKAIPEEDIVIPGS----EEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFE--VAETP  130 (412)
T ss_dssp             CCCTHHHHHTSCSSCEECCSS----GGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EESSH
T ss_pred             CHHHHHHHHHHcCCCEEEECC----cHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EECCH
Confidence            357899999999999999975    44433456677776 789999999999999999999999999999964  68999


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC-CceEEEecccCcceEEEEeeeccee
Q psy10619        113 DHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD-DRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       113 ~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~-~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      +++.+++++++||+||||..++||+|+.+++|.+|+.++++.+.... ..++. ..++||+||+ |+|+++.++.|+..
T Consensus       131 ~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~-~~~g~~~~vlvEe~i~-G~E~sv~~~~dg~~  207 (412)
T 1vkz_A          131 EELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGE-LIKGVKGPVVIDEFLA-GNELSAMAVVNGRN  207 (412)
T ss_dssp             HHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTS-SSTTCCSCEEEEECCC-SEEEEEEEEEETTE
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhc-cccCCCCeEEEEECCc-CcEEEEEEEECCCE
Confidence            99999988999999999999999999999999999999998875421 01322 3799999999 89999999987753

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=99.89  E-value=3.2e-23  Score=173.32  Aligned_cols=141  Identities=17%  Similarity=0.154  Sum_probs=116.0

Q ss_pred             HHhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH-
Q psy10619         42 RQTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA-  119 (246)
Q Consensus        42 ~~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~-  119 (246)
                      ++.++|++++.. +..+++..++..++..|++++|+++.++.+++||..++++|+++|||+|+++  .+.+.+++.+++ 
T Consensus        62 ~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~  139 (317)
T 4eg0_A           62 KDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFE--TVMRGDDYAARAT  139 (317)
T ss_dssp             HHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSCHHHHHH
T ss_pred             hhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EEECchhHHHHHH
Confidence            345677777664 4556778899999999999999999999999999999999999999999975  566666666666 


Q ss_pred             ---HHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        120 ---RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       120 ---~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                         +.++||+||||..+++|.|+.++++.+++.++++.+..     + ...+|||+||+.|+|+++.+++++..
T Consensus       140 ~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-----~-~~~~lvEe~i~~G~E~~v~vl~~~~~  207 (317)
T 4eg0_A          140 DIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT-----H-DKIVIVEKSIEGGGEYTACIAGDLDL  207 (317)
T ss_dssp             HHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTT-----T-CSEEEEEECCCSSEEEEEEEETTCCC
T ss_pred             HHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-----C-CCeEEEEcCCCCCcEEEEEEECCccc
Confidence               78999999999999999999999999999999887542     2 57899999999789999999988543

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1

Probab=99.89  E-value=6.6e-23  Score=175.24  Aligned_cols=136  Identities=21%  Similarity=0.271  Sum_probs=119.6

Q ss_pred             hCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH----HHHH
Q psy10619         44 TRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH----CVEI  118 (246)
Q Consensus        44 ~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~----~~~~  118 (246)
                      .++|+|+|.. |..+++..++..++..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.++    +.++
T Consensus        92 ~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~  169 (377)
T 1ehi_A           92 GDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYI--VVDPESANNWSWDKI  169 (377)
T ss_dssp             CCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEE--EECTTGGGGCCHHHH
T ss_pred             cCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEE--EEeccccchHHHHHH
Confidence            5799999986 5667888888999999999999999999999999999999999999999975  4565543    5566


Q ss_pred             HHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc-ceEEEEeeecc
Q psy10619        119 ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP-RHIEIQGTTYK  188 (246)
Q Consensus       119 ~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g-~e~~v~v~~d~  188 (246)
                      .+.++||+||||..+++|.|+.+++|.+++..+++.+..     + +..+|||+||+ | +|+++.+++++
T Consensus       170 ~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlvEe~I~-G~~E~~v~vl~~~  233 (377)
T 1ehi_A          170 VAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ-----Y-DYKVLIEEAVN-GARELEVGVIGND  233 (377)
T ss_dssp             HHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT-----T-CSCEEEEECCC-CSCEEEEEEEESS
T ss_pred             HHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcCCC-CCceEEEEEEcCC
Confidence            778999999999999999999999999999999887542     2 46899999999 7 99999999875

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=99.89  E-value=7.4e-23  Score=175.15  Aligned_cols=158  Identities=22%  Similarity=0.412  Sum_probs=128.4

Q ss_pred             cCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619          3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR   82 (246)
Q Consensus         3 ~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~   82 (246)
                      +.|.+++.++..++|..+..+       +.+.+.+.+++  +++|+|+++++...  ..+.+.+++.|++ ++++++++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~~--~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~   96 (380)
T 3ax6_A           29 VLDPTPRSPAGQVADEQIVAG-------FFDSERIEDLV--KGSDVTTYDLEHID--VQTLKKLYNEGYK-IHPSPYTLE   96 (380)
T ss_dssp             EEESSTTCTTGGGSSEEEECC-------TTCHHHHHHHH--HTCSEEEESCSCSC--HHHHHHHHHTTCE-ESSCHHHHH
T ss_pred             EEeCCCCCchhhhCceEEECC-------CCCHHHHHHHH--hcCCEEEecccCCC--HHHHHHHHHCCCe-ECCCHHHHH
Confidence            456666777888999887653       46788999988  57999998875422  4567788999999 569999999


Q ss_pred             HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      +++||..++++|+++|||+|++.  .+++.++   ++++++||+|+||..++ +|+|+.++++.+|+..+++        
T Consensus        97 ~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------  163 (380)
T 3ax6_A           97 IIQDKFVQKEFLKKNGIPVPEYK--LVKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK--------  163 (380)
T ss_dssp             HHHSHHHHHHHHHHTTCCCCCEE--ECSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC--------
T ss_pred             HhcCHHHHHHHHHHcCCCCCCeE--EeCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc--------
Confidence            99999999999999999999965  6778776   56789999999999999 9999999999999866542        


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecce
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                          ..++||+||++|+|+++.++.++.
T Consensus       164 ----~~~lvEe~i~~g~e~sv~~~~~~~  187 (380)
T 3ax6_A          164 ----GETYLEEFVEIEKELAVMVARNEK  187 (380)
T ss_dssp             ----SSEEEEECCCEEEEEEEEEEECSS
T ss_pred             ----CCEEEEeccCCCeeEEEEEEECCC
Confidence                579999999978999999998743

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}

Probab=99.89  E-value=2.4e-23  Score=177.51  Aligned_cols=137  Identities=21%  Similarity=0.257  Sum_probs=120.1

Q ss_pred             CCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH--HHHHHHH
Q psy10619         45 RADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH--CVEIARD  121 (246)
Q Consensus        45 ~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~--~~~~~~~  121 (246)
                      ++|+|+|.. |..+|+..++.+|+..|+|++|++..++.+++||..++++|+++|||+|+++  .+.+.++  .......
T Consensus       109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~~  186 (373)
T 3lwb_A          109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA--VLRPPRSTLHRQECER  186 (373)
T ss_dssp             TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEE--EECTTCCCCCHHHHHH
T ss_pred             CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEECcccchhHHHHHh
Confidence            699999985 7788999999999999999999999999999999999999999999999975  4555443  1334678


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ++||+||||..+++|.|+.++++.+|+..+++.+..     + +..+|||+||+ |+|++|.+++++..
T Consensus       187 lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~-----~-~~~vlVEe~I~-G~E~~v~vl~~~~~  248 (373)
T 3lwb_A          187 LGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARR-----H-DPKVIVEAAIS-GRELECGVLEMPDG  248 (373)
T ss_dssp             HCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHT-----T-CSSEEEEECCE-EEEEEEEEEECTTS
T ss_pred             cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCCEEEeCCCC-CeEEEEEEEECCCC
Confidence            999999999999999999999999999999987653     2 57899999999 89999999987643

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=99.89  E-value=3e-23  Score=197.48  Aligned_cols=171  Identities=17%  Similarity=0.300  Sum_probs=131.8

Q ss_pred             CCCCCCh--hhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619          5 DPCVFQR--HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR   82 (246)
Q Consensus         5 d~~~~~~--~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~   82 (246)
                      +.+++..  +...||..+..+        .+.+.+.++++.+++|+|++.++... ...+++.|++.|++++|++++++.
T Consensus       600 ~~np~~~s~~~~~ad~~~~~p--------~~~e~v~~i~~~e~~d~Vi~~~g~~~-~~~la~~Le~~Gi~i~G~~~~ai~  670 (1073)
T 1a9x_A          600 NCNPETVSTDYDTSDRLYFEP--------VTLEDVLEIVRIEKPKGVIVQYGGQT-PLKLARALEAAGVPVIGTSPDAID  670 (1073)
T ss_dssp             CCCTTSSTTSTTSSSEEECCC--------CSHHHHHHHHHHHCCSEEECSSSTHH-HHTTHHHHHHTTCCBCSSCHHHHH
T ss_pred             ecCCcccccccccccEEEecc--------chhhhhhhhhhhcCcceEEeecCCch-HHHHHHHHHHCCCCeeCCCHHHHH
Confidence            4444433  455678777532        56799999999999999998875311 124577889999999999999999


Q ss_pred             HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619         83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAAS  162 (246)
Q Consensus        83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~  162 (246)
                      ++.||..++++|+++|||+|++.  .+.+.+++.++++++|||+||||..++||+|+.+++|.+++.+++..+...    
T Consensus       671 ~~~DK~~~~~ll~~~GIp~P~~~--~~~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~----  744 (1073)
T 1a9x_A          671 RAEDRERFQHAVERLKLKQPANA--TVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSV----  744 (1073)
T ss_dssp             HHHSHHHHHHHHHHHTCCCCCEE--ECCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------
T ss_pred             HhhCHHHHHHHHHHcCcCCCCce--EECCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhh----
Confidence            99999999999999999999975  789999999999999999999999999999999999999999999876432    


Q ss_pred             cCCCceEEEecccCcceEEEEeeeccee
Q psy10619        163 FGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       163 ~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+...++||+||++.+|++|+++.|+..
T Consensus       745 ~~~~~vlvEefI~g~~E~~V~~l~d~~~  772 (1073)
T 1a9x_A          745 SNDAPVLLDHFLDDAVEVDVDAICDGEM  772 (1073)
T ss_dssp             ------EEEBCCTTCEEEEEEEEECSSC
T ss_pred             CCCCcEEEEEccCCCcEEEEEEEEECCe
Confidence            1246799999999444999999998765

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*

Probab=99.88  E-value=2e-22  Score=171.52  Aligned_cols=138  Identities=25%  Similarity=0.343  Sum_probs=120.6

Q ss_pred             HHhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHH-------
Q psy10619         42 RQTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD-------  113 (246)
Q Consensus        42 ~~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~-------  113 (246)
                      +..++|+|++.. |..+++..++..++..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.+       
T Consensus        84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~  161 (364)
T 2i87_A           84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI--SFLRSEYEKYEHN  161 (364)
T ss_dssp             TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE--EEEHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhhcccchh
Confidence            356799999986 5667888888999999999999999999999999999999999999999975  455554       


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        114 HCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       114 ~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ++.++.+.++||+||||..+++|.|+.++++.+++..+++.+..     + +..+|||+||+ |+|+++.+++++
T Consensus       162 ~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~-----~-~~~~lvEe~I~-G~E~~v~vl~~~  229 (364)
T 2i87_A          162 ILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ-----F-DRKLVIEQGVN-AREIEVAVLGND  229 (364)
T ss_dssp             HHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT-----T-CSEEEEEECCC-CEEEEEEEEESS
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCeEEEEeCcc-CeEEEEEEEcCC
Confidence            45666778999999999999999999999999999999887642     2 57899999999 899999999875

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=99.88  E-value=1.4e-22  Score=172.45  Aligned_cols=152  Identities=20%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      |..|.|+++++..+||+++.++.      +.+.+.++.++  +++|+|++++++........+.+++.|++ +|++++++
T Consensus        28 v~vd~~~~~~~~~~aD~~~~~~~------~~d~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~a~   98 (363)
T 4ffl_A           28 VLVDKNPQALIRNYADEFYCFDV------IKEPEKLLELS--KRVDAVLPVNENLACIEFLNSIKEKFSCP-VLFDFEAY   98 (363)
T ss_dssp             EEEESCTTCTTTTTSSEEEECCT------TTCHHHHHHHH--TSSSEEEECCCCHHHHHHHHHHGGGCSSC-BCCCHHHH
T ss_pred             EEEeCCCCChhHhhCCEEEECCC------CcCHHHHHHHh--cCCCEEEECCCChhHHHHHHHHHHHCCCc-cCCCHHHH
Confidence            45688999999999999999864      34556666554  46999999986544434445556667775 57999999


Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..+|++|+++|+|+|++.               .++||+|+||..++||+|+++++|.+++...          
T Consensus        99 ~~~~dK~~~k~~l~~~gip~~~~~---------------~ig~P~vvKp~~g~g~~gv~~v~~~~~~~~~----------  153 (363)
T 4ffl_A           99 RISRDKKKSKDYFKSIGVPTPQDR---------------PSKPPYFVKPPCESSSVGARIIYDDKDLEGL----------  153 (363)
T ss_dssp             HHHTSHHHHHHHHHHTTCCCCCBS---------------CSSSCEEEECSSCCTTTTCEEEC------CC----------
T ss_pred             HHhhCHHHHHHHHHhcCCCCCCce---------------ecCCCEEEEECCCCCCcCeEEeccHHHhhhh----------
Confidence            999999999999999999999864               2589999999999999999999998876322          


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecceee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKFLI  191 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~v  191 (246)
                         ...+++|+|+. |+|+++.+++|+...
T Consensus       154 ---~~~~~~ee~i~-g~e~sv~~~~d~~~~  179 (363)
T 4ffl_A          154 ---EPDTLVEEYVE-GEVVSLEVVGDGSHF  179 (363)
T ss_dssp             ---CTTCEEEECCC-SEEEEEEEEEESSCE
T ss_pred             ---ccchhhhhhcc-CcEEEEEEEEECCeE
Confidence               46799999999 899999999987663

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}

Probab=99.87  E-value=1.2e-22  Score=171.86  Aligned_cols=137  Identities=18%  Similarity=0.265  Sum_probs=119.1

Q ss_pred             HhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619         43 QTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD  121 (246)
Q Consensus        43 ~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~  121 (246)
                      +.++|+|+|.. |..+|+..++..|+..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.+  ..+...
T Consensus        88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~--~~~~~~  163 (346)
T 3se7_A           88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFW--TVTADE--KIPTDQ  163 (346)
T ss_dssp             EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EEETTS--CCCTTT
T ss_pred             ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEcCcH--HHHHHh
Confidence            56799999885 6778888999999999999999999999999999999999999999999975  454443  233557


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ++||+||||..+++|.|+.++++.+|+..+++.+..     + +..+|||+||+ |+|++|.+++++.+
T Consensus       164 lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlvEe~I~-G~E~~v~vl~~~~~  225 (346)
T 3se7_A          164 LTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAARE-----Y-DSKVLIEEAVI-GTEIGCAVMGNGPE  225 (346)
T ss_dssp             CCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTT-----T-CSEEEEEECCC-SEEEEEEEEEETTE
T ss_pred             cCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHh-----C-CCcEEEEeCcC-CEEEEEEEEecCCC
Confidence            899999999999999999999999999999887642     2 57899999999 89999999988643

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*

Probab=99.87  E-value=3.4e-22  Score=166.21  Aligned_cols=136  Identities=20%  Similarity=0.255  Sum_probs=112.8

Q ss_pred             hCCCEEccccc-cCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHH-HHHH
Q psy10619         44 TRADAVHPGYG-FLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE-IARD  121 (246)
Q Consensus        44 ~~~d~v~~~~~-~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~-~~~~  121 (246)
                      .++|++++... ..+++..+...++..|++++|+++.++.+++||..++++|+++|||+|++.  .+.+.+++.. +++.
T Consensus        54 ~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~  131 (307)
T 3r5x_A           54 KDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWI--ELTKMEDLNFDELDK  131 (307)
T ss_dssp             TTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEESSSCCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEeChhhhhHHHHHh
Confidence            58999998853 334666778899999999999999999999999999999999999999975  5666555543 6778


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      ++||+|+||..++||.|+.++++.+++.++++.+...      ...++||+||+ |+|+++.++++.
T Consensus       132 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~-G~e~~v~v~~g~  191 (307)
T 3r5x_A          132 LGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIK-GEEITCSIFDGK  191 (307)
T ss_dssp             HCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEEETTE
T ss_pred             cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEECCcC-CEEEEEEEECCE
Confidence            9999999999999999999999999999999887542      47899999999 899999997553

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*

Probab=99.86  E-value=3.6e-22  Score=167.25  Aligned_cols=134  Identities=23%  Similarity=0.343  Sum_probs=116.1

Q ss_pred             HhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619         43 QTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD  121 (246)
Q Consensus        43 ~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~  121 (246)
                      ..++|+|++.. |..+|+..++..++..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.++.  .. .
T Consensus        74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~--~~-~  148 (322)
T 2fb9_A           74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV--AVRKGEPP--VV-P  148 (322)
T ss_dssp             CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSCC--CC-C
T ss_pred             ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEECchhh--hh-c
Confidence            56799999986 6677888899999999999999999999999999999999999999999975  44444331  22 6


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc-ceEEEEeeecc
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP-RHIEIQGTTYK  188 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g-~e~~v~v~~d~  188 (246)
                      ++||+||||..+++|.|+.++++.+|+..+++.+..     + +..+|||+||+ | +|+++.+++++
T Consensus       149 ~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlvEe~I~-G~~E~~v~vl~~~  209 (322)
T 2fb9_A          149 FDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR-----Y-DEKAVVEKALS-PVRELEVGVLGNV  209 (322)
T ss_dssp             SCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT-----T-CSEEEEEECCS-SCEEEEEEEESSS
T ss_pred             cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCeEEEEeCCC-CCeeEEEEEEeCC
Confidence            899999999999999999999999999999887542     2 47899999999 7 99999999875

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*

Probab=99.86  E-value=5.4e-22  Score=167.59  Aligned_cols=136  Identities=21%  Similarity=0.290  Sum_probs=116.9

Q ss_pred             HhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619         43 QTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD  121 (246)
Q Consensus        43 ~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~  121 (246)
                      ..++|+|++.. |..+|+..++..++..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.+++..  +.
T Consensus        88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~--~~  163 (343)
T 1e4e_A           88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW--VINKDDRPVA--AT  163 (343)
T ss_dssp             EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EECTTCCCCG--GG
T ss_pred             cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEE--EEechhhhhh--hc
Confidence            45799999985 4556777889999999999999999999999999999999999999999975  4555544321  56


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ++||+||||..+++|.|+.++++.+|+..+++.+..     + +..+|||+||+ |+|+++.+++++.
T Consensus       164 ~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-----~-~~~~lvEe~I~-G~E~~v~vl~~~~  224 (343)
T 1e4e_A          164 FTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ-----Y-DSKILIEQAVS-GCEVGCAVLGNSA  224 (343)
T ss_dssp             SCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT-----T-CSSEEEEECCC-SEEEEEEEEEETT
T ss_pred             cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEeCcC-CeEEEEEEEeCCC
Confidence            899999999999999999999999999999877542     2 46899999999 8999999998764

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}

Probab=99.85  E-value=1.7e-21  Score=165.68  Aligned_cols=127  Identities=20%  Similarity=0.362  Sum_probs=110.5

Q ss_pred             CCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHH--HHHHHHHH
Q psy10619         45 RADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD--HCVEIARD  121 (246)
Q Consensus        45 ~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~--~~~~~~~~  121 (246)
                      ++|+|++.. |..+++..++..++..|+|++|++..++.+++||..++++|+++|||+|++.  .+.+.+  ++.+ .+.
T Consensus       107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~-~~~  183 (367)
T 2pvp_A          107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYV--LLNEKNRANALD-LMN  183 (367)
T ss_dssp             ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCE--EECTTTGGGHHH-HCC
T ss_pred             CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEE--EEeCCchHHHHH-Hhc
Confidence            689999885 5567888889999999999999999999999999999999999999999975  456554  5555 667


Q ss_pred             hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc-ceEE
Q psy10619        122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP-RHIE  181 (246)
Q Consensus       122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g-~e~~  181 (246)
                      ++||+||||..+++|.|+.++++.+|+..+++.++.     + +..+|||+||+ | +|++
T Consensus       184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlVEe~I~-G~~E~s  237 (367)
T 2pvp_A          184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFE-----Y-SKEVLIEPFIQ-GVKEYN  237 (367)
T ss_dssp             SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTT-----T-CSCEEEEECCT-TCEEEE
T ss_pred             cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEeCCC-CCceee
Confidence            899999999999999999999999999999887542     2 56899999999 7 9955

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=99.84  E-value=9.1e-21  Score=157.29  Aligned_cols=135  Identities=22%  Similarity=0.295  Sum_probs=113.9

Q ss_pred             HhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHH----
Q psy10619         43 QTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE----  117 (246)
Q Consensus        43 ~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~----  117 (246)
                      +.++|++++.. +...++..+...++..|++++|++++++.+++||..++++|+++|||+|++.  .+.+. ++.+    
T Consensus        52 ~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~--~~~~~-~~~~~~~~  128 (306)
T 1iow_A           52 SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWV--ALTRA-EFEKGLSD  128 (306)
T ss_dssp             TTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EEEHH-HHHHCCCT
T ss_pred             ccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeE--EEchh-hhhccchh
Confidence            35677777664 3334666778889999999999999999999999999999999999999975  56666 6665    


Q ss_pred             ----HHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619        118 ----IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       118 ----~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                          ++++++||+|+||..+++|+|+.++++.+++..+++.+..     + ...++||+||+ |+|+++.++++
T Consensus       129 ~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~-----~-~~~~lvee~i~-g~e~~v~~~~g  195 (306)
T 1iow_A          129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-----H-DEEVLIEKWLS-GPEFTVAILGE  195 (306)
T ss_dssp             HHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT-----T-CSEEEEEECCC-CCEEEEEEETT
T ss_pred             hhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----h-CCCEEEEeCcC-CEEEEEEEECC
Confidence                6778999999999999999999999999999998876532     2 47899999999 89999999954

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=137.85  Aligned_cols=105  Identities=68%  Similarity=1.074  Sum_probs=89.5

Q ss_pred             HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+++||..++++|+++|||+|+++...+.+.+++.++++.++||+|+||.++++|+|+.+++|.+++..+++.+......
T Consensus         4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~   83 (108)
T 2cqy_A            4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAAS   83 (108)
T ss_dssp             CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999997422578899998888999999999999999999999999999999999887654333


Q ss_pred             hcCCCceEEEecccCcceEEEEeee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~  186 (246)
                      .++...+|||+||++.+|++|.+++
T Consensus        84 ~~~~~~~lvee~i~g~~E~~v~v~g  108 (108)
T 2cqy_A           84 SFGDDRLLIEKFIDNPRHISGPSSG  108 (108)
T ss_dssp             HTSSCCEEEEECCSSSSCCCSCCCC
T ss_pred             hcCCCcEEEeeccCCCcEEEEEecC
Confidence            3445789999999955699988764

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*

Probab=99.82  E-value=2.1e-20  Score=157.91  Aligned_cols=127  Identities=13%  Similarity=0.139  Sum_probs=110.5

Q ss_pred             CCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC
Q psy10619         45 RADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY  124 (246)
Q Consensus        45 ~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~  124 (246)
                      ++|+|++.+++.+..  ..+.+++.|  .++|+++++.+++||..+|++|+++|||+|++.  .+.+.+++.++++++||
T Consensus        42 ~~d~it~e~e~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~--~v~~~~e~~~~~~~~G~  115 (355)
T 3eth_A           42 QQSVITAEIERWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGE  115 (355)
T ss_dssp             TTSEEEESCSCCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEE--EECCGGGHHHHHHHHCS
T ss_pred             cCCEEEECcCCcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEE--EECCHHHHHHHHHHcCC
Confidence            899999998776544  566777777  467999999999999999999999999999975  68899999999999999


Q ss_pred             cEEEEeccC-CCCceeEEeCC--HHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        125 PVMIKASAG-GGGKGMRIANN--DQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       125 P~vvKp~~g-~g~~gv~~v~~--~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      |+||||..+ ++|+|++++++  .+|+.+++          + . .++||+||++++|+++.++++..
T Consensus       116 P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~----------~-~-~vivEe~I~~~~Eisv~v~~~~~  171 (355)
T 3eth_A          116 LAIVKRRTGGYDGRGQWRLRANETEQLPAEC----------Y-G-ECIVEQGINFSGEVSLVGARGFD  171 (355)
T ss_dssp             EEEEEESSSCCTTTTEEEEETTCGGGSCGGG----------T-T-TEEEEECCCCSEEEEEEEEECTT
T ss_pred             CEEEEecCCCCCCCeEEEEcCCCHHHHHHHh----------h-C-CEEEEEccCCCcEEEEEEEEcCC
Confidence            999999985 78899999999  99987743          2 2 69999999988999999998654

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*

Probab=99.79  E-value=1.7e-19  Score=147.57  Aligned_cols=139  Identities=15%  Similarity=0.245  Sum_probs=106.3

Q ss_pred             hCCC-EEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619         44 TRAD-AVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI  122 (246)
Q Consensus        44 ~~~d-~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~  122 (246)
                      .++| ++++.++.. +...+++.++..|++++ ++++++..++||..++++|+++|||+|++.  .+.+.+++.++++++
T Consensus        47 ~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~--~~~~~~~~~~~~~~~  122 (280)
T 1uc8_A           47 EGVTVALERCVSQS-RGLAAARYLTALGIPVV-NRPEVIEACGDKWATSVALAKAGLPQPKTA--LATDREEALRLMEAF  122 (280)
T ss_dssp             TTCCEEEECCSSHH-HHHHHHHHHHHTTCCEE-SCHHHHHHHHBHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHH
T ss_pred             CCCCEEEECCccch-hhHHHHHHHHHCCCcee-CCHHHHHHhCCHHHHHHHHHHcCcCCCCeE--eeCCHHHHHHHHHHh
Confidence            4678 566554321 33467788899999998 569999999999999999999999999975  688999998888999


Q ss_pred             CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeecc
Q psy10619        123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYK  188 (246)
Q Consensus       123 ~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~  188 (246)
                      +||+|+||..+++|+|+.++++.+++..+++.+..  ........+++|+||++ +.|+++.++++.
T Consensus       123 ~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~--~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~  187 (280)
T 1uc8_A          123 GYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEV--LGGFQHQLFYIQEYVEKPGRDIRVFVVGER  187 (280)
T ss_dssp             CSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTTCEEEEECCCCSSCCEEEEEETTE
T ss_pred             CCCEEEEECCCCCcccceecccccccchhhhhHhh--hcccCCCcEEEEeccCCCCceEEEEEECCE
Confidence            99999999999999999999999999888776411  01112468999999997 689999887654

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}

Probab=99.78  E-value=1.1e-19  Score=165.95  Aligned_cols=149  Identities=15%  Similarity=0.141  Sum_probs=118.7

Q ss_pred             CCHHHHHHHHHHhCCCEEcccccc-CCCCHHHHHHHHH--cCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYGF-LSENASFVSRLKE--EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI  108 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~~-~~e~~~~~~~~~~--~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~  108 (246)
                      .+.+.|+++|+++++|+++.+.+. +... .....+..  .|..+.+++..++.+++||..++++|+++|||+|++.  .
T Consensus       433 ~st~~Iv~~A~~~gid~~vlg~e~~l~~l-g~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~--~  509 (757)
T 3ln7_A          433 LSTQALLFDVIQKGIHTEILDENDQFLCL-KYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSV--E  509 (757)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEETTTTEEEE-EETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEE--E
T ss_pred             CCHHHHHHHHHHhCCCEEEECCCHHHHHh-cccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEE--E
Confidence            567899999999999999877411 0000 00011111  3555667788999999999999999999999999975  6


Q ss_pred             cCCHHHHHHHH-HHhCCcEEEEeccCCCCceeEEe----CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEE
Q psy10619        109 IRDADHCVEIA-RDIGYPVMIKASAGGGGKGMRIA----NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ  183 (246)
Q Consensus       109 ~~~~~~~~~~~-~~~~~P~vvKp~~g~g~~gv~~v----~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~  183 (246)
                      +.+.+++.+++ +.+|||+||||..|++|+||.++    ++.+++..+++.+...      +..++||+||+ |+|++|.
T Consensus       510 ~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~------~~~vlVEefI~-G~Ei~v~  582 (757)
T 3ln7_A          510 FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE------DKEVMVEDYLV-GTEYRFF  582 (757)
T ss_dssp             ESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH------CSSEEEEECCC-SEEEEEE
T ss_pred             ECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc------CCcEEEEEcCC-CcEEEEE
Confidence            88998887766 67899999999999999999998    8999999999876532      46799999999 8999999


Q ss_pred             eeeccee
Q psy10619        184 GTTYKFL  190 (246)
Q Consensus       184 v~~d~~~  190 (246)
                      +++++..
T Consensus       583 Vlggkvv  589 (757)
T 3ln7_A          583 VLGDETL  589 (757)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            9977543

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*

Probab=99.71  E-value=3.5e-17  Score=138.32  Aligned_cols=159  Identities=16%  Similarity=0.205  Sum_probs=109.8

Q ss_pred             cCCCCCCCh---hhhccceeEEcCCCCcCCCCCCH--HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCC
Q psy10619          3 FPDPCVFQR---HVKLADEAVCIGPPVAAQSYINV--DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPT   77 (246)
Q Consensus         3 ~~d~~~~~~---~~~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~   77 (246)
                      +.|.+++.+   +...||+++..+      .+.+.  +.+++.+++.+ ++|.|.... .....+...+++.|+++++ +
T Consensus        45 ~vd~~~~~p~~~~~~~ad~~~~~d------~~~d~~~~~~l~~l~~~~-~vV~pe~~~-v~~~gl~~l~~~~g~~v~g-~  115 (361)
T 2r7k_A           45 CITMKGRDVPYKRFKVADKFIYVD------NFSDIKNEEIQEKLRELN-SIVVPHGSF-IAYCGLDNVENSFLVPMFG-N  115 (361)
T ss_dssp             EEECTTSCHHHHHTTCCSEEEECS------SGGGGGSHHHHHHHHHTT-EEECCBHHH-HHHHCHHHHHHTCCSCBBS-C
T ss_pred             EEECCCCCCcccccccCceEEECC------CcccccHHHHHHHHHHcC-CEEEeCchh-hhHHHHHHHHHHcCCCcCC-C
Confidence            345555556   788899998764      13331  45555555554 666554311 0000122334589999997 7


Q ss_pred             HHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHH
Q psy10619         78 AECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQ  157 (246)
Q Consensus        78 ~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~  157 (246)
                      ..++.+..||...+++|+++|||+|++    +.+.+++       +||+||||..+++|+|+++++|.+|+.++++.+..
T Consensus       116 ~~a~~~e~~k~~~k~~l~~~GIptp~~----~~~~~e~-------~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~  184 (361)
T 2r7k_A          116 RRILRWESERSLEGKLLREAGLRVPKK----YESPEDI-------DGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKK  184 (361)
T ss_dssp             GGGGGTTTCHHHHHHHHHHTTCCCCCE----ESSGGGC-------CSCEEEECSCCCC---EEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHcCcCCCCE----eCCHHHc-------CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh
Confidence            888899999999999999999999984    3555543       69999999999999999999999999999988753


Q ss_pred             HHHhhcC---CCceEEEecccCcceEEEEe
Q psy10619        158 EAAASFG---DDRILVEKFIKNPRHIEIQG  184 (246)
Q Consensus       158 ~~~~~~~---~~~~lve~~i~~g~e~~v~v  184 (246)
                      ..  .++   ...++||||++ |.|+++..
T Consensus       185 ~~--~~~~~~~~~viIEEfl~-G~e~s~~~  211 (361)
T 2r7k_A          185 RG--ILTDEDIANAHIEEYVV-GTNFCIHY  211 (361)
T ss_dssp             TT--SCCHHHHHHCEEEECCC-SEEEEEEE
T ss_pred             cc--ccccCCCCeEEEEeccc-eEEeeEEE
Confidence            21  010   13599999999 88887443

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}

Probab=99.70  E-value=1.4e-17  Score=152.47  Aligned_cols=148  Identities=16%  Similarity=0.107  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHhCCCEEcccccc--CCCCHHHHHHHHHcCCeEeCCCH-HHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619         32 INVDKIIDAIRQTRADAVHPGYGF--LSENASFVSRLKEEGVVFIGPTA-ECIRGMGDKLESKKLAKEAGVNIIPGFNGI  108 (246)
Q Consensus        32 ~~~~~l~~~~~~~~~d~v~~~~~~--~~e~~~~~~~~~~~g~~~~g~~~-~~~~~~~dK~~~~~~l~~~gip~p~~~~~~  108 (246)
                      .+.+.+++.+++.++++++...+.  ..........+...|. ++|++. .++..++||..++++|+++|||+|++.  .
T Consensus       428 ~S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~-itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~--~  504 (750)
T 3ln6_A          428 LSTQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGN-MTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGD--E  504 (750)
T ss_dssp             HHHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTT-BCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCC--C
T ss_pred             ccHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCC-eeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEE--E
Confidence            467899999999999998766421  1000000000000121 234443 456677799999999999999999976  6


Q ss_pred             cCCHHHHHHHH-HHhCCcEEEEeccCCCCceeEEeC---CHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEe
Q psy10619        109 IRDADHCVEIA-RDIGYPVMIKASAGGGGKGMRIAN---NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG  184 (246)
Q Consensus       109 ~~~~~~~~~~~-~~~~~P~vvKp~~g~g~~gv~~v~---~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v  184 (246)
                      +.+.+++.+++ ..+|||+||||..|++|+||.+++   +.+++.++++.+...      ...++||+||+ |+|++|.+
T Consensus       505 ~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~------~~~vlVEefI~-G~E~~v~V  577 (750)
T 3ln6_A          505 FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE------DSAILVEEYIE-GTEYRFFV  577 (750)
T ss_dssp             EETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEE
T ss_pred             ECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh------CCcEEEEeccC-CCEEEEEE
Confidence            77888887777 678999999999999999999998   999999999876542      57899999999 89999999


Q ss_pred             eecce
Q psy10619        185 TTYKF  189 (246)
Q Consensus       185 ~~d~~  189 (246)
                      +++..
T Consensus       578 vgg~v  582 (750)
T 3ln6_A          578 LEGDC  582 (750)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            97754

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}

Probab=99.69  E-value=1.3e-16  Score=127.87  Aligned_cols=103  Identities=22%  Similarity=0.274  Sum_probs=90.1

Q ss_pred             hcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccC-----CCCceeEE-eCCHHHHHHHHHHHHH
Q psy10619         84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAG-----GGGKGMRI-ANNDQEAIEGFKLSSQ  157 (246)
Q Consensus        84 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g-----~g~~gv~~-v~~~~el~~~~~~~~~  157 (246)
                      ..||..++++|+++|||+|++.  .+++.+++.++++++|||+|+||..+     +++.|+.+ ++|.+++.++++.+..
T Consensus        19 ~l~k~~~k~ll~~~GIp~p~~~--~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~   96 (238)
T 1wr2_A           19 AMVEYEAKQVLKAYGLPVPEEK--LAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHE   96 (238)
T ss_dssp             EECHHHHHHHHHTTTCCCCCCE--EESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHH
Confidence            4699999999999999999976  68899999998999999999999998     67788988 7999999999999876


Q ss_pred             HHHhhcC---CCceEEEecccCcceEEEEeeecc
Q psy10619        158 EAAASFG---DDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       158 ~~~~~~~---~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      .....++   ...++||+|+++|+|+++.++.|.
T Consensus        97 ~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~  130 (238)
T 1wr2_A           97 NAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDP  130 (238)
T ss_dssp             HHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEET
T ss_pred             hhhhhCCCCccceEEEEECCCCCeEEEEEEEeCC
Confidence            5443332   267999999998899999999987

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*

Probab=99.69  E-value=8.4e-17  Score=134.93  Aligned_cols=145  Identities=16%  Similarity=0.172  Sum_probs=100.0

Q ss_pred             hhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHH
Q psy10619         12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESK   91 (246)
Q Consensus        12 ~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~   91 (246)
                      +...+|..+..+.      +.+ +.   +++  .+|+|++..+..  .....+.++..|++++ +++.++.+++||..++
T Consensus        41 ~~~~~~~~~~~~~------~~d-~~---l~~--~~d~i~~~~e~~--~~~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~  105 (334)
T 2r85_A           41 KYFPVADYFIEEK------YPE-EE---LLN--LNAVVVPTGSFV--AHLGIELVENMKVPYF-GNKRVLRWESDRNLER  105 (334)
T ss_dssp             TTSCCCSEEECSS------CCH-HH---HHH--TTEEECCCTTHH--HHHCHHHHHTCCSCBB-SCTTHHHHHHSHHHHH
T ss_pred             cccccCceEecCC------cCh-HH---hcc--cCCEEEECcchh--hhhHHHHHHHcCCCcc-CCHHHHHHHHhHHHHH
Confidence            4556787776531      222 22   222  358887664211  0122345678999987 5578999999999999


Q ss_pred             HHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhc-CCCceEE
Q psy10619         92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF-GDDRILV  170 (246)
Q Consensus        92 ~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~-~~~~~lv  170 (246)
                      ++|+++|||+|++    +.+.++       ++||+|+||..++||+|+.++++.+++..+++.+....  .+ ....++|
T Consensus       106 ~~l~~~gip~p~~----~~~~~~-------l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~lv  172 (334)
T 2r85_A          106 KWLKKAGIRVPEV----YEDPDD-------IEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIK--RKEDLKNIQI  172 (334)
T ss_dssp             HHHHHTTCCCCCB----CSCGGG-------CCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCC--SGGGCCSEEE
T ss_pred             HHHHHcCCCCCCc----cCChHH-------cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhc--ccCCCCcEEE
Confidence            9999999999995    344443       57999999999999999999999999999887764210  01 1367999


Q ss_pred             EecccCcceEEEEee
Q psy10619        171 EKFIKNPRHIEIQGT  185 (246)
Q Consensus       171 e~~i~~g~e~~v~v~  185 (246)
                      |+||+ |.|+++.++
T Consensus       173 ee~i~-G~e~~~~~~  186 (334)
T 2r85_A          173 QEYVL-GVPVYPHYF  186 (334)
T ss_dssp             EECCC-CEEEEEEEE
T ss_pred             EeccC-CceeEEEEe
Confidence            99999 889885443

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*

Probab=99.67  E-value=5.1e-16  Score=129.77  Aligned_cols=126  Identities=12%  Similarity=0.235  Sum_probs=100.9

Q ss_pred             CCCEEccccccCCCCHHHHHHHHH-----cCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH
Q psy10619         45 RADAVHPGYGFLSENASFVSRLKE-----EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA  119 (246)
Q Consensus        45 ~~d~v~~~~~~~~e~~~~~~~~~~-----~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~  119 (246)
                      ++|++++....  +...+...++.     .|++++ ++++++..++||..++++|+++|||+|+++  .+.+.+++.+++
T Consensus        55 ~~d~v~~~~~~--~~~~~~~~l~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~--~~~~~~~~~~~~  129 (324)
T 1z2n_X           55 EPNAIITKRTH--PVGKMADEMRKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSF--SVKSKEEVIQLL  129 (324)
T ss_dssp             CCSEEEECCSC--SSSHHHHHHHHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEE--EESSHHHHHHHH
T ss_pred             CceEEEEeccc--hHHHHHHHHHHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHH
Confidence            68888876522  22233444443     788875 899999999999999999999999999975  678888888887


Q ss_pred             HHh--CCcEEEEeccCCCC---ceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeecc
Q psy10619        120 RDI--GYPVMIKASAGGGG---KGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYK  188 (246)
Q Consensus       120 ~~~--~~P~vvKp~~g~g~---~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~  188 (246)
                      +..  +||+|+||..|.||   .|+.++++.+++..            . ...+++|+||++ |.++++.++++.
T Consensus       130 ~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~------------~-~~~~lvqe~i~~~g~~~~v~v~g~~  191 (324)
T 1z2n_X          130 QSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD------------I-HFPCLCQHYINHNNKIVKVFCIGNT  191 (324)
T ss_dssp             HTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT------------C-CSSEEEEECCCCTTCEEEEEEETTE
T ss_pred             HHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh------------c-CCCEEEEEccCCCCcEEEEEEECCE
Confidence            774  49999999999888   99999999887642            1 467999999985 789999887654

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}

Probab=99.66  E-value=1.4e-16  Score=132.13  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHH
Q psy10619         35 DKIIDAIRQTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD  113 (246)
Q Consensus        35 ~~l~~~~~~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~  113 (246)
                      +.+.+++++  +|++++. .+.......+.+.++..| +++|++++++++++||..++++|++ |||+|+++   +    
T Consensus        61 ~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~---~----  129 (305)
T 3df7_A           61 DSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTS---L----  129 (305)
T ss_dssp             GGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEE---S----
T ss_pred             HHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEe---c----
Confidence            566777655  7776654 221111124555666667 7899999999999999999999999 99999964   2    


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619        114 HCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       114 ~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                            ..++||+|+||.+|+||+|+.++++                   ....+++|+||+ |+|+++.++.++
T Consensus       130 ------~~~~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~-G~e~sv~v~~g~  178 (305)
T 3df7_A          130 ------RPLDCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIE-GINLSVSLAVGE  178 (305)
T ss_dssp             ------SCCSSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCC-SEEEEEEEEESS
T ss_pred             ------ccCCCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccC-CcEEEEEEEeCC
Confidence                  2578999999999999999999988                   147899999999 899999999754

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*

Probab=99.65  E-value=1.3e-15  Score=125.53  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=105.7

Q ss_pred             hCCCEEccccccCC--C---CHHHHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHhCC---CCCCCCccccCC
Q psy10619         44 TRADAVHPGYGFLS--E---NASFVSRLKEEGVVFIGPTAECIRGMGDK----LESKKLAKEAGV---NIIPGFNGIIRD  111 (246)
Q Consensus        44 ~~~d~v~~~~~~~~--e---~~~~~~~~~~~g~~~~g~~~~~~~~~~dK----~~~~~~l~~~gi---p~p~~~~~~~~~  111 (246)
                      ..+|++++..+...  +   ...+...|+..|++++ ++++++..|.||    ..+.++|+++|+   |.|+..  ...+
T Consensus        67 ~~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~--~~~~  143 (309)
T 1i7n_A           67 FRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQT--YYPN  143 (309)
T ss_dssp             ECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCE--EESS
T ss_pred             ccCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEE--eeCC
Confidence            35899987754322  1   1355677999999999 999999999999    667888899999   865543  2333


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        112 ADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       112 ~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+   ..+.+|||+|+||..|+.|+||.++++.++++..+..+...      +..+++||||+.|+++++.++++...
T Consensus       144 ~~~---~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VvGg~v~  213 (309)
T 1i7n_A          144 HRE---MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGNNYK  213 (309)
T ss_dssp             GGG---GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETTEEE
T ss_pred             hhh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeecCCCceEEEEEECCEEE
Confidence            333   34457999999999999999999999999998888654431      35688999999899999999988864

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9

Probab=99.61  E-value=4e-17  Score=135.54  Aligned_cols=146  Identities=13%  Similarity=0.109  Sum_probs=93.7

Q ss_pred             CcCCCCCCCh---hhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCH
Q psy10619          2 LFPDPCVFQR---HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTA   78 (246)
Q Consensus         2 v~~d~~~~~~---~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~   78 (246)
                      ++.|.+++++   +..+||+++.++.      |.+      ++  ...|++++..++..  ....+.+++.|++++ ++.
T Consensus        28 iv~d~~~~~p~~~a~~~ad~~~~~~~------~~d------l~--~~~dvitpe~e~v~--~~~l~~le~~~~p~~-p~~   90 (320)
T 2pbz_A           28 RLYVSPKRRPFYSSLPIVDDLVVAEE------MTS------IL--NDDGIVVPHGSFVA--YLGIEAIEKAKARFF-GNR   90 (320)
T ss_dssp             EEEECTTTHHHHHTCTTCSEEEECSC------SCC------TT--CCSSBCCCBTTHHH--HSCHHHHHTCCSCCB-SCS
T ss_pred             EEEECCCCCccchhhhcCCeEEECCc------HHH------HH--hcCCEEEecccchh--HHHHHHHHHcCCCcC-CCH
Confidence            3456666666   8889999998741      333      22  23477776653210  111334678999987 677


Q ss_pred             HHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619         79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE  158 (246)
Q Consensus        79 ~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~  158 (246)
                      +++....||...+++|+++|||+|+++  .   .+++     .++||+||||+.++||+|+++++| +|+..+++.+   
T Consensus        91 ~~l~~~~dr~~~~~~l~~~Gip~P~~~--~---~ee~-----~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~---  156 (320)
T 2pbz_A           91 RFLKWETTFELQDKALEGAGIPRVEVV--E---PEDA-----KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL---  156 (320)
T ss_dssp             SGGGGGSCHHHHHHHHHHHTCCBCCBC--C---SCCC-----CSSCCEEEECC------------C-EECSCCCC-----
T ss_pred             HHHHHHHhHHHHHHHHHHCCcCCCCee--C---HhHc-----CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc---
Confidence            889999999999999999999999965  2   2332     479999999999999999999999 9997765442   


Q ss_pred             HHhhcCCCceEEEecccCcceEEEEee
Q psy10619        159 AAASFGDDRILVEKFIKNPRHIEIQGT  185 (246)
Q Consensus       159 ~~~~~~~~~~lve~~i~~g~e~~v~v~  185 (246)
                            ...++||+||+ |.++++.++
T Consensus       157 ------~~~~IiEEfI~-g~~~~~~~f  176 (320)
T 2pbz_A          157 ------EEPYRVERFIP-GVYLYVHFF  176 (320)
T ss_dssp             --------CCEEEECCC-SCEEEEEEE
T ss_pred             ------CCCEEEEeeec-eEecceeEE
Confidence                  14699999999 777774443

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}

Probab=99.60  E-value=4.2e-15  Score=123.97  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             CCCEEccccccCC--C---CHHHHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHhCC---CCCCCCccccCCH
Q psy10619         45 RADAVHPGYGFLS--E---NASFVSRLKEEGVVFIGPTAECIRGMGDK----LESKKLAKEAGV---NIIPGFNGIIRDA  112 (246)
Q Consensus        45 ~~d~v~~~~~~~~--e---~~~~~~~~~~~g~~~~g~~~~~~~~~~dK----~~~~~~l~~~gi---p~p~~~~~~~~~~  112 (246)
                      .+|++++..+...  +   ...+...|+..|++++ ++++++..|.||    ..+.++|.++|+   |.++..  ...+.
T Consensus        85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t--~~~~~  161 (344)
T 2p0a_A           85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQT--FFPNH  161 (344)
T ss_dssp             CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCE--EESSS
T ss_pred             CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEE--ecCch
Confidence            6899987754311  1   1355677999999999 999999999999    777888899999   865543  22332


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        113 DHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       113 ~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+   ..+.+|||+|+||..|+.|+||.++++.++++..+..+...      +..+++||||+.|+++++.++++...
T Consensus       162 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VVGg~vv  230 (344)
T 2p0a_A          162 KP---MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGSNYK  230 (344)
T ss_dssp             TT---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETTEEE
T ss_pred             hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeccCCCccEEEEEECCEEE
Confidence            22   34467999999999999999999999999998877654421      35688999999889999999988864

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A

Probab=99.60  E-value=1.7e-15  Score=125.78  Aligned_cols=131  Identities=11%  Similarity=0.135  Sum_probs=102.5

Q ss_pred             hCCCEEccccccCCC-----CHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHH
Q psy10619         44 TRADAVHPGYGFLSE-----NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI  118 (246)
Q Consensus        44 ~~~d~v~~~~~~~~e-----~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~  118 (246)
                      .++|+|++......+     ...+.+.++..|++++ +++.++.++.||..++++|+    |+|++.  .+.+.+++.++
T Consensus        78 ~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~--~~~~~~~~~~~  150 (316)
T 1gsa_A           78 ADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETL--VTRNKAQLKAF  150 (316)
T ss_dssp             GGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEE--EESCHHHHHHH
T ss_pred             ccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeE--EeCCHHHHHHH
Confidence            358999986532111     1145566778999987 78999999999999999987    999965  67889999888


Q ss_pred             HHHhCCcEEEEeccCCCCceeEEeC-CHHHHHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeec
Q psy10619        119 ARDIGYPVMIKASAGGGGKGMRIAN-NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTY  187 (246)
Q Consensus       119 ~~~~~~P~vvKp~~g~g~~gv~~v~-~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d  187 (246)
                      ++.++ |+|+||..|++|+|+.+++ +.+++..+++.+..     .....+++|+||++  +.|+++.+.++
T Consensus       151 ~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-----~~~~~~lvqe~i~~~~~~~~~v~~~~g  216 (316)
T 1gsa_A          151 WEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-----HGTRYCMAQNYLPAIKDGDKRVLVVDG  216 (316)
T ss_dssp             HHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-----TTTSCEEEEECCGGGGGCEEEEEEETT
T ss_pred             HHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-----cCCceEEEecccCCCCCCCEEEEEECC
Confidence            88888 9999999999999999998 88888877765321     12367999999995  46777766543

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*

Probab=99.59  E-value=9.7e-15  Score=123.95  Aligned_cols=134  Identities=18%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             CCCEEccccccCC-----CCHHHHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHhCC---CCCCCCccccCCH
Q psy10619         45 RADAVHPGYGFLS-----ENASFVSRLKEEGVVFIGPTAECIRGMGDK----LESKKLAKEAGV---NIIPGFNGIIRDA  112 (246)
Q Consensus        45 ~~d~v~~~~~~~~-----e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK----~~~~~~l~~~gi---p~p~~~~~~~~~~  112 (246)
                      .+|++++..+...     ....+...|+..|++++ ++++++.+|.||    ..+.++|+++|+   |.++..  ...+.
T Consensus       180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t--~~~~~  256 (422)
T 1pk8_A          180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQT--FYPNH  256 (422)
T ss_dssp             CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCE--EESSG
T ss_pred             CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceE--ecCch
Confidence            5888887754222     11355677999999999 999999999999    567778889999   755532  23333


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        113 DHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       113 ~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+   .++.+|||+|+||..|+.|+||.++++.++++..+..+...      +..+++||||+.|++++|.+++++..
T Consensus       257 ~~---~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~------~~~~~vQEfI~~g~DIRv~VVGg~vv  325 (422)
T 1pk8_A          257 KE---MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT------KTYATAEPFIDAKYDVRVQKIGQNYK  325 (422)
T ss_dssp             GG---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TSCEEEEECCCEEEEEEEEEETTEEE
T ss_pred             hh---hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc------CceEEEEeecCCCceEEEEEECCEEE
Confidence            22   33457999999999999999999999999999888755431      35688999999889999999988864

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=99.48  E-value=7.2e-14  Score=119.25  Aligned_cols=102  Identities=22%  Similarity=0.301  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      +.+..|++|+++|||+|++.  .+++.+++.++++++|||+|+||....+++    ||.+++|.+|+.+++++++.....
T Consensus         4 ~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~   81 (397)
T 3ufx_B            4 HEYQAKEILARYGVPVPPGK--VAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIK   81 (397)
T ss_dssp             CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhcc
Confidence            56789999999999999975  789999999999999999999999854444    999999999999999887642110


Q ss_pred             hcCCCceEEEecccCcceEEEEeeecce
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ....+.++||+|++.++|+++.++.|..
T Consensus        82 g~~~~~vlVEe~v~~g~El~vgv~~D~~  109 (397)
T 3ufx_B           82 GLTVKKVLVAEAVDIAKEYYAGLILDRA  109 (397)
T ss_dssp             TEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred             CCccceEEEEEeecCCeeEEEEEEecCC
Confidence            1113579999999989999999999864

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X

Probab=99.47  E-value=5.8e-14  Score=118.07  Aligned_cols=106  Identities=15%  Similarity=0.231  Sum_probs=84.6

Q ss_pred             cCCeEeCCCHHHHHHhcCHHHHHHHHHHh-------CCCCCCCCccccCC--HHHHHHHHH--HhCCcEEEEeccCCC--
Q psy10619         69 EGVVFIGPTAECIRGMGDKLESKKLAKEA-------GVNIIPGFNGIIRD--ADHCVEIAR--DIGYPVMIKASAGGG--  135 (246)
Q Consensus        69 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~--~~~~~~~~~--~~~~P~vvKp~~g~g--  135 (246)
                      .|++++ +++.++..+.||..|.++|.++       |||+|+++  .+.+  .+++.+...  .++||+|+||..|.|  
T Consensus       100 ~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~--~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~  176 (346)
T 2q7d_A          100 PETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM--ELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTN  176 (346)
T ss_dssp             TTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEE--EECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTT
T ss_pred             CCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEE--EEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcce
Confidence            489988 9999999999999999999998       99999975  4544  244544443  578999999997643  


Q ss_pred             CceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeeccee
Q psy10619        136 GKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYKFL  190 (246)
Q Consensus       136 ~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~~  190 (246)
                      +.|+.++++.++|...             ...++|||||+. |++++|.++++...
T Consensus       177 s~~v~~v~~~~~l~~~-------------~~~~lvQefI~~~G~dirv~VvG~~v~  219 (346)
T 2q7d_A          177 SHEMAIVFNQEGLNAI-------------QPPCVVQNFINHNAVLYKVFVVGESYT  219 (346)
T ss_dssp             CCEEEEECSGGGTTC---------------CCEEEEECCCCTTEEEEEEEETTEEE
T ss_pred             eeeeEEecCHHHHHhc-------------CCCEEEEEeeCCCCeEEEEEEECCEEE
Confidence            6699999999887542             356999999974 88999999987643

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=99.47  E-value=1.1e-13  Score=117.92  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=85.6

Q ss_pred             cCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHH
Q psy10619         85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        85 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      .+++.+|++|+++|||+|++.  .+++.+++.++++++||| +|+||..+.|++    ||.+++|.+|+.+++++++...
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~   80 (388)
T 2nu8_B            3 LHEYQAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKR   80 (388)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSE
T ss_pred             CCHHHHHHHHHHCCcCCCCee--EECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhh
Confidence            378899999999999999975  789999999999999999 999999865444    9999999999999998876421


Q ss_pred             H-------hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619        160 A-------ASFGDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       160 ~-------~~~~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      .       .....+.++||+|+++++|+++.++.|+.
T Consensus        81 ~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~  117 (388)
T 2nu8_B           81 LVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRS  117 (388)
T ss_dssp             ECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred             hhccccCCCCcccceEEEEEccccCCcEEEEEEEecc
Confidence            0       00012479999999988999999999875

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=99.41  E-value=3.7e-13  Score=114.75  Aligned_cols=102  Identities=22%  Similarity=0.311  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC-cEEEEec--cCCCCc---------eeEEeCCHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKAS--AGGGGK---------GMRIANNDQEAIEGFK  153 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~--~g~g~~---------gv~~v~~~~el~~~~~  153 (246)
                      +++.+|++|+++|||+|++.  .+.+.+++.++++++|| |+|+||.  .|+.|+         ||.+++|.+|+.++++
T Consensus         4 ~E~~aK~lL~~~GIpvp~~~--~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~   81 (395)
T 2fp4_B            4 QEYQSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK   81 (395)
T ss_dssp             CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHH
Confidence            67889999999999999975  78999999999999999 8999996  444443         4889999999999998


Q ss_pred             HHHHHHH--hhc---C--CCceEEEecccCcceEEEEeeecce
Q psy10619        154 LSSQEAA--ASF---G--DDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       154 ~~~~~~~--~~~---~--~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      +++....  ...   +  .+.++||+|++.++|+++.++.|+.
T Consensus        82 ~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~  124 (395)
T 2fp4_B           82 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS  124 (395)
T ss_dssp             TTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETT
T ss_pred             HHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccc
Confidence            8764210  000   1  2469999999989999999999875

>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*

Probab=98.99  E-value=2.6e-11  Score=98.04  Aligned_cols=138  Identities=12%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             CCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHH------------
Q psy10619         46 ADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD------------  113 (246)
Q Consensus        46 ~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~------------  113 (246)
                      +|++++.++.--......+.++..+..++ ++..+..+++||..+.++|+++|||+|++.  .+....            
T Consensus        58 ~d~lisf~s~gfpl~kai~y~~lr~p~~I-Nd~~~q~~~~DK~~~~~iL~~~gIPtP~t~--~~~rd~~~~~~~~~~e~~  134 (330)
T 3t7a_A           58 CDCLISFHSKGFPLDKAVAYAKLRNPFVI-NDLNMQYLIQDRREVYSILQAEGILLPRYA--ILNRDPNNPKECNLIEGE  134 (330)
T ss_dssp             CSEEEECCCTTCCHHHHHHHHHHHCCEES-BCSTHHHHHTBHHHHHHHHHHTTCCCCCEE--EECCBTTBGGGSSEEECS
T ss_pred             CCEEEEeccCCCcHHHHHHHHHHhCCcee-CCHHHHHHHHHHHHHHHHHHHcCCCCCCEE--EEeCCCCCccccceeccc
Confidence            45566554311112255677777777666 899999999999999999999999999975  333211            


Q ss_pred             HHHH-HHHHhCCcEEEEeccCC-----------CCcee----EEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-
Q psy10619        114 HCVE-IARDIGYPVMIKASAGG-----------GGKGM----RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-  176 (246)
Q Consensus       114 ~~~~-~~~~~~~P~vvKp~~g~-----------g~~gv----~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-  176 (246)
                      +..+ ....+++|+|+||.+|.           .|.|.    .++.|.+.....-...       ..+..+|+||||+. 
T Consensus       135 d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v-------r~~~~~i~QEFI~~~  207 (330)
T 3t7a_A          135 DHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV-------RKTGSYIYEEFMPTD  207 (330)
T ss_dssp             SEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC-------CSSSCEEEEECCCCS
T ss_pred             hhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh-------ccCCcEEEEeccCCC
Confidence            1111 12356799999999985           22233    3344433210000000       11467999999974 


Q ss_pred             cceEEEEeeecceeecc
Q psy10619        177 PRHIEIQGTTYKFLIQT  193 (246)
Q Consensus       177 g~e~~v~v~~d~~~v~~  193 (246)
                      |+++.+-++++..-..+
T Consensus       208 G~DIRv~vVG~~vv~Am  224 (330)
T 3t7a_A          208 GTDVKVYTVGPDYAHAE  224 (330)
T ss_dssp             SEEEEEEEESTTCEEEE
T ss_pred             CceEEEEEECCEEEEEE
Confidence            89999999988765433

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*

Probab=98.20  E-value=1.6e-06  Score=74.34  Aligned_cols=105  Identities=9%  Similarity=-0.134  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHhCC---C-CCCCCcccc---CCHHHHHHHHHHhC-CcEEEEeccCCCC----ceeEEeCCHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGV---N-IIPGFNGII---RDADHCVEIARDIG-YPVMIKASAGGGG----KGMRIANNDQEAIEGFK  153 (246)
Q Consensus        86 dK~~~~~~l~~~gi---p-~p~~~~~~~---~~~~~~~~~~~~~~-~P~vvKp~~g~g~----~gv~~v~~~~el~~~~~  153 (246)
                      -.+..|++|.++++   | +.+..+..+   ++.+++.+.++.+| ||+|+|+....|+    .||.+..|.+|+.+++.
T Consensus         7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~   86 (425)
T 3mwd_A            7 SEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLK   86 (425)
T ss_dssp             CHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHT
T ss_pred             hHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHH
Confidence            35678999999999   4 222111133   45688888888998 9999999764332    37888899999999988


Q ss_pred             HHHHHHHhh----cCCCceEEEecccC--cceEEEEeeeccee
Q psy10619        154 LSSQEAAAS----FGDDRILVEKFIKN--PRHIEIQGTTYKFL  190 (246)
Q Consensus       154 ~~~~~~~~~----~~~~~~lve~~i~~--g~e~~v~v~~d~~~  190 (246)
                      +++......    ..-..++||++++.  ++|+.+.+..|..+
T Consensus        87 ~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~g  129 (425)
T 3mwd_A           87 PRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREG  129 (425)
T ss_dssp             TTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTE
T ss_pred             HHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCC
Confidence            876422100    00246999999974  58999999988754

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=97.97  E-value=6e-06  Score=76.01  Aligned_cols=103  Identities=9%  Similarity=-0.100  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHhCCC------CCCCCccccC---CHHHHHHHHHHhC-CcEEEEeccCCCCc----eeEEeCCHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVN------IIPGFNGIIR---DADHCVEIARDIG-YPVMIKASAGGGGK----GMRIANNDQEAIEG  151 (246)
Q Consensus        86 dK~~~~~~l~~~gip------~p~~~~~~~~---~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~  151 (246)
                      -.+..|++|.++++|      .+++.  .++   +.+++.++++.++ +|+|+|+....|+|    ||.+..|.+|+.++
T Consensus         7 ~Ey~aK~ll~~~~~~~~~~~~~~~~~--~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~a   84 (829)
T 3pff_A            7 SEQTGKELLYKFICTTSAIQNRFKYA--RVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSW   84 (829)
T ss_dssp             CHHHHHHHHHHHCCCSSCBCSTTCCE--EECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHH
T ss_pred             hHHHHHHHHHHhCccccccccCCceE--EeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHH
Confidence            357789999999998      33432  344   4577777777887 99999998765554    78888999999999


Q ss_pred             HHHHHHHHHhh----cCCCceEEEecccC--cceEEEEeeeccee
Q psy10619        152 FKLSSQEAAAS----FGDDRILVEKFIKN--PRHIEIQGTTYKFL  190 (246)
Q Consensus       152 ~~~~~~~~~~~----~~~~~~lve~~i~~--g~e~~v~v~~d~~~  190 (246)
                      +.+++......    ..-..++||++++.  ++||.+.+..|..+
T Consensus        85 a~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~g  129 (829)
T 3pff_A           85 LKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREG  129 (829)
T ss_dssp             HTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTE
T ss_pred             HHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCC
Confidence            88876432110    00146899999974  58999999998754

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=97.64  E-value=9.1e-05  Score=67.54  Aligned_cols=44  Identities=43%  Similarity=0.854  Sum_probs=36.5

Q ss_pred             hcCCCCCCCCcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        201 KLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       201 ~~~~~~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++.....+....++|||||.+.++.++.||.|++||+|++||
T Consensus       601 ~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE  644 (681)
T 3n6r_A          601 RLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE  644 (681)
T ss_dssp             TTSCCCCCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             cccccccCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence            34444333445577999999999999999999999999999998

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=97.53  E-value=6.4e-05  Score=49.44  Aligned_cols=32  Identities=16%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+|++|.+.++.++.||.|++||.|++||
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie   37 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME   37 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence            45889999999999999999999999999988

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=97.44  E-value=0.00011  Score=46.53  Aligned_cols=30  Identities=37%  Similarity=0.574  Sum_probs=24.7

Q ss_pred             eeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        215 LHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      +.+|++|.+.++.++.||.|++||.|+.||
T Consensus         2 v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~   31 (72)
T 1z6h_A            2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILE   31 (72)
T ss_dssp             EECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             EECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence            577888888888888888888888888876

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.38  E-value=0.00015  Score=49.26  Aligned_cols=32  Identities=16%  Similarity=0.367  Sum_probs=28.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+|++|.+.++.++.||.|++||.|+.||
T Consensus        18 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le   49 (100)
T 2dn8_A           18 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME   49 (100)
T ss_dssp             TEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred             cEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence            45889999999999999999999999999887

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=97.29  E-value=0.00024  Score=45.23  Aligned_cols=31  Identities=45%  Similarity=0.714  Sum_probs=22.6

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .+.+|++|.+.++.++.||.|++||.|+.||
T Consensus         7 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~   37 (74)
T 2d5d_A            7 VVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE   37 (74)
T ss_dssp             EEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             EEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence            4667777777777777777777777777766

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=97.25  E-value=0.00016  Score=48.59  Aligned_cols=32  Identities=50%  Similarity=0.992  Sum_probs=28.3

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+|++|.+.++.++.||.|++||.|+.||
T Consensus        26 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie   57 (94)
T 2jku_A           26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE   57 (94)
T ss_dssp             CCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred             eEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence            45889999999999999999999999999887

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=97.20  E-value=0.00023  Score=46.17  Aligned_cols=32  Identities=31%  Similarity=0.608  Sum_probs=30.0

Q ss_pred             cceeccccceeeee-------eecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSV-------NCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l-------~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+|++|.+.++       .++.||.|++||.|+.||
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie   43 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE   43 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEE
Confidence            35899999999999       899999999999999998

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=97.18  E-value=0.00045  Score=44.32  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=22.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+++.|.+.++.++.||.|++||.|+.||
T Consensus         9 ~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~   40 (77)
T 1dcz_A            9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE   40 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred             eEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence            34677777777777777777777777777766

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=97.10  E-value=0.00051  Score=66.04  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        210 DETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       210 ~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .....+.|||+|.+.++.++.||.|++||+|++||
T Consensus      1075 ~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A         1075 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp             TCSSEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             CCCceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence            34467999999999999999999999999999998

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=97.10  E-value=0.0004  Score=47.09  Aligned_cols=32  Identities=34%  Similarity=0.456  Sum_probs=27.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.++++|.+.++.++.||.|++||.|+.||
T Consensus        15 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie   46 (99)
T 2ejm_A           15 GGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI   46 (99)
T ss_dssp             SSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred             eEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence            45888899999999999999999999998887

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=96.86  E-value=0.0011  Score=60.56  Aligned_cols=34  Identities=35%  Similarity=0.671  Sum_probs=31.8

Q ss_pred             cccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ....+.+||+|.+.++.++.||.|++||+|++||
T Consensus       648 ~~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE  681 (718)
T 3bg3_A          648 VKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS  681 (718)
T ss_dssp             SSSCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred             CCceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence            3457999999999999999999999999999998

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=96.76  E-value=0.00085  Score=43.30  Aligned_cols=29  Identities=14%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             eccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        216 HAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       216 ~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .++++|.+.++.++.||.|++||.|+.||
T Consensus        11 ~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie   39 (79)
T 1ghj_A           11 ESIADGTVATWHKKPGEAVKRDELIVDIE   39 (79)
T ss_dssp             SSCSCEEECCCSSCTTSEECSSCEEEEEE
T ss_pred             CCCCCEEEEEEEcCCCCEECCCCEEEEEE
Confidence            35678889999999999999999999887

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=96.71  E-value=0.0017  Score=62.59  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=28.8

Q ss_pred             cccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ....+.+||+|.+.++.++.||.|++||+|++||
T Consensus      1094 ~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A         1094 NAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp             CTTEEECSSCEEEEEECCSSCCCC---CEEEEEE
T ss_pred             CCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEE
Confidence            3467999999999999999999999999999998

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=96.71  E-value=0.00068  Score=43.54  Aligned_cols=29  Identities=24%  Similarity=0.278  Sum_probs=23.9

Q ss_pred             eccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        216 HAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       216 ~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .++++|.+.++.++.||.|++||.|+.||
T Consensus        11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie   39 (77)
T 2l5t_A           11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVM   39 (77)
T ss_dssp             SSCCCEEEEECSCCTTCEECSCCCCCEEE
T ss_pred             CCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence            45678888888888888888888888887

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=96.69  E-value=0.00093  Score=43.33  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=21.4

Q ss_pred             ccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        217 APMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       217 sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ++++|.+.++.++.||.|++||.|++||
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie   39 (81)
T 1gjx_A           12 GHENVDIIAVEVNVGDTIAVDDTLITLE   39 (81)
T ss_dssp             SCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred             CCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence            4677777777777777777777777776

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=96.64  E-value=0.0013  Score=43.26  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=24.5

Q ss_pred             ccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        217 APMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       217 sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      +..+|.+.++.++.||.|++||.|++||
T Consensus        16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie   43 (87)
T 3crk_C           16 TMTMGTVQRWEKKVGEKLSEGDLLAEIE   43 (87)
T ss_dssp             TCCEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             CCCcEEEEEEEcCCCCEEcCCCEEEEEE
Confidence            3567889999999999999999999988

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=96.41  E-value=0.0019  Score=43.10  Aligned_cols=27  Identities=26%  Similarity=0.250  Sum_probs=21.9

Q ss_pred             cccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        218 PMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       218 p~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+|.+.++.++.||.|++||.|++||
T Consensus        16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie   42 (93)
T 1k8m_A           16 IREVTVKEWYVKEGDTVSQFDSICEVQ   42 (93)
T ss_dssp             SCCEEEEEECCCTTCEECSSSCCEEEE
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence            457888888888888888888888887

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=96.39  E-value=0.0024  Score=61.81  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.|||+|.+.++.++.||.|++||+|++||
T Consensus      1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A         1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred             cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence            56999999999999999999999999999998

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=96.37  E-value=0.0033  Score=40.53  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=30.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++||..|.+.++.++.|+.|..||.|+.||
T Consensus        49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            46999999999999999999999999999986

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.34  E-value=0.0024  Score=43.04  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=24.3

Q ss_pred             cccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        218 PMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       218 p~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+|.+.++.++.||.|++||.|++||
T Consensus        19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie   45 (98)
T 2dnc_A           19 MEEGNIVKWLKKEGEAVSAGDALCEIE   45 (98)
T ss_dssp             CSEECEEEESSCTTCEECTTSEEEEEE
T ss_pred             CccEEEEEEEcCCCCEeCCCCEEEEEE
Confidence            367889999999999999999999998

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=96.26  E-value=0.0027  Score=43.64  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             cccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        218 PMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       218 p~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...|.+.++.++.||.|++||.|++||
T Consensus        19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE   45 (108)
T 2dne_A           19 MQAGTIARWEKKEGDKINEGDLIAEVE   45 (108)
T ss_dssp             CCEEEEEECSSCTTCEECTTSEEEEEE
T ss_pred             cccEEEEEEEcCCCCEecCCCEEEEEE
Confidence            457889999999999999999999998

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=96.23  E-value=0.00076  Score=44.26  Aligned_cols=31  Identities=29%  Similarity=0.598  Sum_probs=23.3

Q ss_pred             eeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        215 LHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      +++|..|.+.++.++.|+.|..|++|+.|+.
T Consensus        42 i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~   72 (85)
T 2k7v_A           42 VPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   72 (85)
T ss_dssp             EECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred             EECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            5677777777777777777777777777763

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=96.20  E-value=0.0043  Score=39.64  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++||..|.+.++.++.|+.|..|++|+.|+
T Consensus        45 ~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           45 VKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             EEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            46999999999999999999999999999986

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=96.16  E-value=0.0039  Score=40.18  Aligned_cols=34  Identities=26%  Similarity=0.520  Sum_probs=31.2

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ...++||..|.+.++.++.|+.|..||+|+.|+.
T Consensus        43 ~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             eEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence            3569999999999999999999999999999974

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.16  E-value=0.0051  Score=38.63  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ...+++|..|.+.++.++.|+.|+.||+|+.|+-
T Consensus        36 ~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A           36 EIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             EEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             EEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            3469999999999999999999999999998863

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*

Probab=96.12  E-value=0.0098  Score=50.04  Aligned_cols=56  Identities=20%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc-------Ccc--eEEEEeeec
Q psy10619        123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK-------NPR--HIEIQGTTY  187 (246)
Q Consensus       123 ~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~-------~g~--e~~v~v~~d  187 (246)
                      +.++|+||..++.|+|+.++++.+++.+.++..         ...++||+||+       +|+  ++++-++..
T Consensus       147 ~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvt  211 (380)
T 3tig_A          147 GNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVD  211 (380)
T ss_dssp             CCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEEC
T ss_pred             CCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEc
Confidence            578999999999999999999999987766431         35799999996       344  555555543

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=96.10  E-value=0.0066  Score=38.98  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.++.++.|+.|..|++|+.|+.
T Consensus        42 ~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~   74 (79)
T 1iyu_A           42 MEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            469999999999999999999999999999874

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=96.00  E-value=0.0014  Score=42.33  Aligned_cols=27  Identities=19%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             cccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        218 PMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       218 p~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+|.+.++.++.||.|++||.|++||
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie   40 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIE   40 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCC
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEE
Confidence            467888888888888888888888877

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=96.00  E-value=0.0072  Score=38.79  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.++.++.|+.|..|++|+.|+.
T Consensus        45 ~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           45 MEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             EEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            569999999999999999999999999999975

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=95.90  E-value=0.0055  Score=39.43  Aligned_cols=26  Identities=35%  Similarity=0.343  Sum_probs=24.7

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      +|.+.++.++.||.|++||.|++||-
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~   39 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEG   39 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEES
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEc
Confidence            89999999999999999999999983

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.87  E-value=0.0071  Score=38.53  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...+++|..|.+.++.++.|+.|..|++|+.||
T Consensus        45 ~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           45 ETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             EEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             eEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            356999999999999999999999999999987

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=95.81  E-value=0.0071  Score=39.47  Aligned_cols=31  Identities=32%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             eeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        215 LHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ++.|..|.+.++.++.||.|++||.|++||-
T Consensus         5 i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~   35 (85)
T 2k7v_A            5 VNVPDIVEVTEVMVKVGDKVAAEQSLITVEG   35 (85)
T ss_dssp             CCCCSCCCCCSCCCSSSCCCCCSSSCCCCSC
T ss_pred             EECCCeEEEEEEEcCCCCEEcCCCEEEEEEc
Confidence            5667779999999999999999999999983

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=95.75  E-value=0.0068  Score=42.92  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..|.|.++.++.||.|++||.|++||
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iE   65 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIE   65 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEE
Confidence            45778888888888888888888887

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=95.73  E-value=0.011  Score=37.28  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=30.0

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+++|..|.+.++.++.|+.|..|+.|+.||
T Consensus        43 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           43 NEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             EEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            46999999999999999999999999999986

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=95.62  E-value=0.011  Score=39.32  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.++.++.|+.|..||+|+.|+.
T Consensus        48 ~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~   80 (93)
T 1k8m_A           48 VTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (93)
T ss_dssp             EECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             EEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence            568999999999999999999999999999974

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=95.50  E-value=0.013  Score=38.31  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCC-eeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGD-QIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~-~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.++.++.|+ .|..||+|+.|+.
T Consensus        49 ~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C           49 IGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             EEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred             ceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence            56999999999999999999 8999999999975

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=95.35  E-value=0.0077  Score=43.05  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=27.3

Q ss_pred             eeccccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619        215 LHAPMPGLVKSVNC-KVGDQIMEGQELCVVGK  245 (246)
Q Consensus       215 l~sp~pg~i~~l~~-~~G~~v~~g~~~~v~e~  245 (246)
                      ..+|++|.+..+.+ ++||.|++||++++||-
T Consensus        39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs   70 (136)
T 1zko_A           39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIES   70 (136)
T ss_dssp             HHHHHHCSEEEEECCCTTCEECTTCEEEEEEE
T ss_pred             hhcccCCCcEEEEecCCCCEEeCCCEEEEEEE
Confidence            45688888888888 99999999999999993

>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}

Probab=94.98  E-value=0.031  Score=48.35  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             HHHHHHHHcCCeEeCCCHHHHHHhcCHHHH-------HHHHHH-hCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEecc
Q psy10619         61 SFVSRLKEEGVVFIGPTAECIRGMGDKLES-------KKLAKE-AGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA  132 (246)
Q Consensus        61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~-------~~~l~~-~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~  132 (246)
                      .+.+..++-++.+..+. .+ .++.||..+       +.++.+ .=++..+++  .+.+.++.....+.+. -+|+||..
T Consensus       297 gLl~A~r~G~V~i~Na~-gs-gv~~dKal~a~Lp~l~~~~lgEe~il~~VpT~--~c~~~~~~~~vl~~l~-~lViKp~~  371 (474)
T 3n6x_A          297 GLLSVYRNGGVTLANAV-GT-GVADDKDTYIYVPEMIRFYLGEEPILSNVPTY--QLSKADDLKYVLDNLA-ELVVKEVQ  371 (474)
T ss_dssp             THHHHHHTTSCEEESCT-TT-HHHHSTTTGGGHHHHHHHHHCSCCSSEECCCE--ETTSHHHHHHHHHSGG-GEEEEECC
T ss_pred             HHHHHHHcCCEEEeCCC-ch-hhhcCcHHHHHhHHHHHHhCCHhhhccCCCce--ecCCHHHHHHHHhchh-heEEEecC
Confidence            56777777788877443 33 256677632       222222 223445544  4677777777776665 79999999


Q ss_pred             CCCCceeEEe--CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619        133 GGGGKGMRIA--NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN  176 (246)
Q Consensus       133 g~g~~gv~~v--~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~  176 (246)
                      +.||.|+.+-  -+.++.++..+++..      ....+++|++++-
T Consensus       372 g~gg~gv~iG~~~s~~e~~~~~~~i~~------~p~~yIaQe~v~l  411 (474)
T 3n6x_A          372 GSGGYGMLVGPAASKQELEDFRQRILA------NPANYIAQPTLAL  411 (474)
T ss_dssp             CE-----EEGGGCCHHHHHHHHHHHHH------SGGGEEEEECCCC
T ss_pred             CCCCCceEECCcCCHHHHHHHHHHHHh------CCCCEEEeeccCC
Confidence            9999999873  577888777776654      1346999999984

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=94.93  E-value=0.012  Score=37.94  Aligned_cols=33  Identities=42%  Similarity=0.561  Sum_probs=30.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.+++++.|+.|..|+.|+.|+.
T Consensus        45 ~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (81)
T 1gjx_A           45 MDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             EEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             EEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence            569999999999999999999999999999874

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=94.83  E-value=0.011  Score=37.97  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.++.++.|+.|..||+|+.|+-
T Consensus        46 ~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           46 LEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            568999999999999999999999999998863

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=94.74  E-value=0.02  Score=36.64  Aligned_cols=25  Identities=32%  Similarity=0.248  Sum_probs=23.1

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      . .+.++.++.||.|++||.|+.||-
T Consensus        13 ~-~i~~~~v~~Gd~V~~G~~l~~le~   37 (79)
T 1iyu_A           13 G-EVIELLVKTGDLIEVEQGLVVLES   37 (79)
T ss_dssp             E-EEEEECCCTTCBCCSSSEEEEEEC
T ss_pred             C-EEEEEecCCCCEEcCCCEEEEEEc
Confidence            5 899999999999999999999983

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.67  E-value=0.026  Score=37.85  Aligned_cols=34  Identities=15%  Similarity=0.210  Sum_probs=31.2

Q ss_pred             ccceeccccceeeeeeecCCCee-eCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQI-MEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v-~~g~~~~v~e~  245 (246)
                      ...+++|..|.+.++.++.|+.| ..||+|+.|+.
T Consensus        50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~   84 (98)
T 2dnc_A           50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE   84 (98)
T ss_dssp             EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred             eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence            35699999999999999999999 99999999975

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=94.60  E-value=0.03  Score=38.29  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=31.1

Q ss_pred             ccceeccccceeeeeeecCCC-eeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGD-QIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~-~v~~g~~~~v~e~  245 (246)
                      ...+++|..|.+.++.++.|+ .|..||.|++|+.
T Consensus        50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~   84 (108)
T 2dne_A           50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG   84 (108)
T ss_dssp             EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred             eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence            356999999999999999999 8999999999975

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=94.60  E-value=0.031  Score=39.46  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             ccceeccccceeeeeeecCCC-eeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGD-QIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~-~v~~g~~~~v~e~  245 (246)
                      ...+.+|..|.+.++.++.|| .|..||.|++|+.
T Consensus        70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~  104 (128)
T 1y8o_B           70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE  104 (128)
T ss_dssp             EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence            356899999999999999998 8999999999975

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=94.52  E-value=0.022  Score=36.98  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=30.2

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ...++||..|.+.++. +.|+.|..|+.|+.|+.
T Consensus        42 ~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~   74 (84)
T 2kcc_A           42 IMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL   74 (84)
T ss_dssp             EEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred             eEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence            3569999999999999 99999999999999975

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=94.49  E-value=0.0066  Score=40.52  Aligned_cols=32  Identities=38%  Similarity=0.575  Sum_probs=0.0

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++||..|.+.++.++.|+.|..|++|+.||
T Consensus        63 ~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           63 NSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             --------------------------------
T ss_pred             EEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            45899999999999999999999999999886

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=94.18  E-value=0.032  Score=46.18  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++..|.+.++.++.||.|++||.|+.|+-
T Consensus        32 ~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~   64 (341)
T 3fpp_A           32 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   64 (341)
T ss_dssp             EECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred             EEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence            358889999999999999999999999999863

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=94.16  E-value=0.024  Score=40.25  Aligned_cols=30  Identities=20%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             eccccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619        216 HAPMPGLVKSVNC-KVGDQIMEGQELCVVGK  245 (246)
Q Consensus       216 ~sp~pg~i~~l~~-~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|.+..+.+ ++|+.|++||++++||-
T Consensus        31 a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs   61 (131)
T 1hpc_A           31 AQDHLGEVVFVELPEPGVSVTKGKGFGAVES   61 (131)
T ss_dssp             HHHHHCSEEEEECCCTTCEECBTSEEEEEEE
T ss_pred             hcccCCCceEEEecCCCCEEeCCCEEEEEEe
Confidence            4577788888888 99999999999999983

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=93.89  E-value=0.042  Score=36.87  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+.++.++.|+.|..|+.|+.|+.
T Consensus        52 ~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~   84 (99)
T 2ejm_A           52 HTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE   84 (99)
T ss_dssp             EEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred             EEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence            469999999999999999999999999999864

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=93.75  E-value=0.041  Score=45.87  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=30.5

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus        58 ~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~   90 (359)
T 3lnn_A           58 VKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS   90 (359)
T ss_dssp             EEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred             EEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence            458999999999999999999999999999974

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=93.43  E-value=0.045  Score=45.96  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus        44 ~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~   76 (369)
T 1vf7_A           44 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   76 (369)
T ss_dssp             EEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            358899999999999999999999999999963

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.43  E-value=0.077  Score=35.59  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=29.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|..|.+. +.++.|+.|..|++|+.|+.
T Consensus        55 ~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           55 MTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             EEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             EEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            569999999999 99999999999999999874

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=93.03  E-value=0.049  Score=38.47  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=24.9

Q ss_pred             eccccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619        216 HAPMPGLVKSVNC-KVGDQIMEGQELCVVGK  245 (246)
Q Consensus       216 ~sp~pg~i~~l~~-~~G~~v~~g~~~~v~e~  245 (246)
                      .++++|-+..+.+ ++|+.|++||++++||-
T Consensus        31 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs   61 (128)
T 1onl_A           31 AQDALGDVVYVELPEVGRVVEKGEAVAVVES   61 (128)
T ss_dssp             HHHHHCSEEEEECBCTTCEECTTCEEEEEEE
T ss_pred             HhhcCCCceEEEecCCCCEEeCCCEEEEEEE
Confidence            3466777777777 99999999999999983

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=92.89  E-value=0.047  Score=45.65  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.++..|.+.++.++.||.|++||.|+.|+-
T Consensus        33 ~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~   65 (369)
T 4dk0_A           33 VDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS   65 (369)
T ss_dssp             CCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred             EEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence            458899999999999999999999999999863

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=92.85  E-value=0.053  Score=38.26  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=25.4

Q ss_pred             eccccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619        216 HAPMPGLVKSVNC-KVGDQIMEGQELCVVGK  245 (246)
Q Consensus       216 ~sp~pg~i~~l~~-~~G~~v~~g~~~~v~e~  245 (246)
                      ..+++|-+..+.+ ++|+.|++||++++||-
T Consensus        32 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs   62 (128)
T 3a7l_A           32 AQELLGDMVFVDLPEVGATVSAGDDCAVAES   62 (128)
T ss_dssp             HHHHHCSEEEEECCCTTCEECTTCEEEEEEE
T ss_pred             HhccCCceEEEEecCCCCEEeCCCEEEEEEe
Confidence            4567787887877 99999999999999983

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=92.84  E-value=0.06  Score=37.12  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=29.5

Q ss_pred             cceeccccceeeeeeecCCCeeeCC-CeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEG-QELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g-~~~~v~e  244 (246)
                      ..++||..|.+..+.++.|+.|..| ++|+.|.
T Consensus        68 ~~i~AP~~G~V~~~~~~~G~~v~~g~~~l~~i~  100 (116)
T 2k32_A           68 TEIKAPFDGTIGDALVNIGDYVSASTTELVRVT  100 (116)
T ss_dssp             EEEECSSSEEECCCSCCTTCEECTTTSCCEEEE
T ss_pred             CEEEcCCCEEEEEEECCCCCEEcCCCcEEEEEE
Confidence            3699999999999999999999999 9999875

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=92.37  E-value=0.091  Score=44.81  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=29.7

Q ss_pred             cceeccccceeeeeee-cCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNC-KVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~-~~G~~v~~g~~~~v~e  244 (246)
                      ..+.++..|.|.++.+ +.||.|++||.|+.|+
T Consensus       122 ~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld  154 (413)
T 3ne5_B          122 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT  154 (413)
T ss_dssp             EEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred             EEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence            4588999999999998 9999999999999997

>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*

Probab=91.94  E-value=0.044  Score=49.17  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=59.1

Q ss_pred             HHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCC-CC---CCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCc
Q psy10619         62 FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVN-II---PGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGK  137 (246)
Q Consensus        62 ~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip-~p---~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~  137 (246)
                      +.+.+.+.+++++.|....+  +.||..+.-+.+.+  | .|   +++  ...+. ++    ..  -.+|+||..|..|.
T Consensus       475 ll~~l~~~~v~iieP~~~~l--lsNKailalLw~l~--p~hp~LLpT~--f~~~~-~l----~~--~~yV~KPi~gReG~  541 (619)
T 2io8_A          475 LIDVLLRPEVLVFEPLWTVI--PGNKAILPILWSLF--PHHRYLLDTD--FTVND-EL----VK--TGYAVKPIAGRCGS  541 (619)
T ss_dssp             HHHHHTCTTCEEESCGGGGT--TTSTTHHHHHHHHS--TTCTTCCCEE--SSCCH-HH----HH--HCEEEEETTCCTTT
T ss_pred             HHHHHHhCCCEEECHHHHHH--hhhHHHHHHHHHhC--CCCCCCCCee--ecCCc-cc----cc--CCEEEccCCCCCCC
Confidence            34456667789986665544  89999988887765  3 33   432  12222 21    11  25899999999999


Q ss_pred             eeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619        138 GMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN  176 (246)
Q Consensus       138 gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~  176 (246)
                      ||.++...++.   +..    ....+...+++.|+|++-
T Consensus       542 nV~i~~~~~~~---~~~----~~~~y~~~~~IyQe~~~l  573 (619)
T 2io8_A          542 NIDLVSHHEEV---LDK----TSGKFAEQKNIYQQLWCL  573 (619)
T ss_dssp             TCEEECTTSCE---EEE----CCCTTTTSCEEEEECCCC
T ss_pred             CEEEEeCCChh---Hhh----ccccccCCCeEEEEecCC
Confidence            99998652221   000    011234577899999974

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=90.92  E-value=0.22  Score=36.49  Aligned_cols=20  Identities=10%  Similarity=0.174  Sum_probs=16.8

Q ss_pred             eeeecCCCeeeCCCeEEEEc
Q psy10619        225 SVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       225 ~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...++.||.|++||.|+.+.
T Consensus        97 ~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           97 KRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             EECSCTTCEECTTCEEEEEC
T ss_pred             EEEEeCcCEECCCCEEEEEC
Confidence            33899999999999888764

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=90.53  E-value=0.23  Score=36.11  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=19.3

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      .|.--.+.++.||.|++||.|+.+.
T Consensus        87 ~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           87 DGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             CCCceEEEEcCCCEEcCCCEEEEEC
Confidence            3334446899999999999988764

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=89.16  E-value=0.24  Score=36.39  Aligned_cols=27  Identities=26%  Similarity=0.291  Sum_probs=20.4

Q ss_pred             cccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        218 PMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       218 p~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -+.|.--...++.||.|++||.|+.+.
T Consensus        90 ~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           90 SLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             TTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             hcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence            344444556899999999999888764

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=83.66  E-value=0.72  Score=32.21  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=22.5

Q ss_pred             ccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619        219 MPGLVKSVNC-KVGDQIMEGQELCVVGK  245 (246)
Q Consensus       219 ~pg~i~~l~~-~~G~~v~~g~~~~v~e~  245 (246)
                      +.|-|..+.+ ++|+.|++||++++||-
T Consensus        30 ~lGdiv~velp~vG~~v~~G~~~~~VES   57 (125)
T 3klr_A           30 ALGDVVYCSLPEVGTKLNKQEEFGALES   57 (125)
T ss_dssp             HHCSEEEEECCCTTCEECTTCEEEEEEE
T ss_pred             hCCCeEEEEeCCCCCEEcCCCEEEEEEE
Confidence            4567777776 79999999999999983

>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A

Probab=83.03  E-value=1.5  Score=39.62  Aligned_cols=95  Identities=14%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             HHHHHc--CCeEeCCCHHHHHHhcCHHHHHHHHHHhC-CC-CCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCcee
Q psy10619         64 SRLKEE--GVVFIGPTAECIRGMGDKLESKKLAKEAG-VN-IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGM  139 (246)
Q Consensus        64 ~~~~~~--g~~~~g~~~~~~~~~~dK~~~~~~l~~~g-ip-~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv  139 (246)
                      +.+...  .+.++.|...  .+.+||..+.-+-..+- -| .++++   +.....    +..-  ..|+||..|..|.||
T Consensus       490 ~~l~~~~~~v~~ieP~wk--~LlsNKaiLalLW~l~p~hp~LLpt~---f~~~~~----~~~~--~yV~KPi~gReG~nV  558 (652)
T 2vob_A          490 DLLLGDDWEILYFEPMWK--VIPSNKAILPMIYHNHPEHPAILKAE---YELTDE----LRKH--GYAKKPIVGRVGSNV  558 (652)
T ss_dssp             HHHSSSCTTSEEESCGGG--GTTTSTTHHHHHHHHCTTCTTBCCEE---SSCCHH----HHHH--CEEEEECC-------
T ss_pred             HHHhcCCCceEEeChhHH--HhhcCHHHHHHHHhcccCCCCCCchh---hcCCCc----cccC--CeEeccCCCCCCCCE
Confidence            445555  6777755433  35789998777666422 12 23322   121111    1112  489999999999999


Q ss_pred             EEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619        140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN  176 (246)
Q Consensus       140 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~  176 (246)
                      .+.....+.   +...    ...++..++++|+|++-
T Consensus       559 ~I~~~~~~~---~~~~----~g~y~~~~~IyQe~~~l  588 (652)
T 2vob_A          559 IITSGDGVV---HAES----GGKYGKRNMIYQQLFEL  588 (652)
T ss_dssp             ---------------------------CEEEEECCC-
T ss_pred             EEEcCCchh---hhhc----ccccCCCCeEEEecccC
Confidence            887543322   1111    11244578999999863

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=81.64  E-value=0.29  Score=41.94  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.+|..|++.++.++.||.|..||+|++||-
T Consensus        46 ~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~   78 (428)
T 3dva_I           46 VEIPSPVKGKVLEILVPEGTVATVGQTLITLDA   78 (428)
T ss_dssp             ---------------------------------
T ss_pred             EEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            458999999999999999999999999999973

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=81.33  E-value=0.85  Score=38.74  Aligned_cols=32  Identities=19%  Similarity=0.409  Sum_probs=29.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -.++||..|++.++.++.|+.|..|++|+.|-
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~  239 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  239 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence            46999999999999999999999999999873

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=81.20  E-value=1.4  Score=36.21  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ...+++|..|++.. .++.||.|++||.|..|+
T Consensus       257 ~~~v~A~~~Gl~~~-~v~~Gd~V~~G~~la~I~  288 (331)
T 3na6_A          257 DCYLFSEHDGLFEI-MIDLGEPVQEGDLVARVW  288 (331)
T ss_dssp             CCCEECSSCEEEEE-SSCTTCEECTTCEEEEEE
T ss_pred             cEEEeCCCCeEEEE-cCCCCCEEcCCCEEEEEE
Confidence            35689999998876 599999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1ulza2	114	c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term	3e-22
d1ulza3	214	d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom	1e-20
d1a9xa5	275	d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta	1e-19
d2j9ga3	216	d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom	1e-19
d1w96a2	170	c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N s	7e-18
d2j9ga2	114	c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term	9e-18
d2r7ka2	238	d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo	9e-18
d1a9xa6	259	d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta	1e-16
d2r85a2	235	d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo	3e-14
d1w96a3	267	d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M	2e-11
d1uc8a2	192	d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly	4e-11
d1gsoa3	224	d.142.1.2 (A:104-327) Glycinamide ribonucleotide s	1e-07
d1ehia2	228	d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V	4e-07
d1kjqa3	206	d.142.1.2 (A:113-318) Glycinamide ribonucleotide t	4e-06
d1iowa2	210	d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain	5e-06
d3etja3	198	d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo	1e-05
d1e4ea2	211	d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V	1e-05
d1i7na2	206	d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor	2e-05
d1vkza3	220	d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy	6e-04
d2nu7b2	238	d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-	9e-04
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	0.001

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 114

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 86.1 bits (213), Expect = 3e-22
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 1   MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
            ++ +     RHVKLADEA  IG      +Y+N  +II+   +  ADA+HPGYGFL+ENA
Sbjct: 30  AIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINLALEVGADAIHPGYGFLAENA 88

Query: 61  SFVSRLKEEGVVFIGPTAECIRGMGD 86
            F    +E G+ FIGP  + I  MGD
Sbjct: 89  EFAKMCEEAGITFIGPHWKVIELMGD 114

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

 Score = 84.9 bits (209), Expect = 1e-20
 Identities = 45/97 (46%), Positives = 75/97 (77%)

Query: 87  KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
           K  SK++ K+AGV ++PG +G+++  +    +AR+IGYPV++KA+AGGGG+G+RI  N++
Sbjct: 1   KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60

Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           E ++ ++ +S+EA  +FG   +L+EKFI+NP+HIE Q
Sbjct: 61  ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQ 97

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

 Score = 83.5 bits (206), Expect = 1e-19
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           D+       K+ G+       GI    +  + +A D+G+P +I+ S   GG G  IA N 
Sbjct: 1   DRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 58

Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG 184
           +E    F+              +L+++ +   +  E++ 
Sbjct: 59  EE----FEEICARGLDLSPTKELLIDESLIGWKEYEMEV 93

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

 Score = 81.8 bits (201), Expect = 1e-19
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN 144
           DK+ +    K+AGV  +PG +G +  D D    IA+ IGYPV+IKAS GGGG+GMR+   
Sbjct: 1   DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60

Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           D E  +   ++  EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 61  DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 99

>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Acetyl-CoA carboxylase, BC-N subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.3 bits (187), Expect = 7e-18
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 12  HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEE-- 69
           ++++AD+ + +       +Y NVD I+D   +   DAV  G+G  SEN     +L +   
Sbjct: 96  YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 155

Query: 70  GVVFIGPTAECIRGM 84
            V+FIGP    +R +
Sbjct: 156 KVIFIGPPGNAMRSL 170

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 74.3 bits (182), Expect = 9e-18
 Identities = 43/77 (55%), Positives = 54/77 (70%)

Query: 9   FQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
             +HV LADE VCIGP  + +SY+N+  II A   T A A+HPGYGFLSENA+F  +++ 
Sbjct: 38  DLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVER 97

Query: 69  EGVVFIGPTAECIRGMG 85
            G +FIGP AE IR MG
Sbjct: 98  SGFIFIGPKAETIRLMG 114

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 77.5 bits (190), Expect = 9e-18
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           ++    KL +EAG+ +   +           E   DI   V++K     GG+G  IA++ 
Sbjct: 1   ERSLEGKLLREAGLRVPKKY-----------ESPEDIDGTVIVKFPGARGGRGYFIASST 49

Query: 146 QEAIEGFKLSSQEAA-ASFGDDRILVEKFIKNPRHIE 181
           +E  +  +   +             +E+++       
Sbjct: 50  EEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCI 86

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

 Score = 74.7 bits (183), Expect = 1e-16
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 91  KKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIE 150
           +   +   +      N  +   +  VE A++IGYP++++AS   GG+ M I  ++ +   
Sbjct: 3   QHAVERLKLKQPA--NATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEAD--- 57

Query: 151 GFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
             +   Q A +   D  +L++ F+ +   +++ 
Sbjct: 58  -LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVD 89

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 20/107 (18%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           D+   +K  K+AG+ +   +           E   DI  PV++K     GGKG  +A + 
Sbjct: 1   DRNLERKWLKKAGIRVPEVY-----------EDPDDIEKPVIVKPHGAKGGKGYFLAKDP 49

Query: 146 QEAIEGFKLSSQEAAAS---------FGDDRILVEKFIKNPRHIEIQ 183
           ++     +                  +     +   +  +    E++
Sbjct: 50  EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELE 96

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 2e-11
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 24/86 (27%)

Query: 85  GDKLESKKLAKEAGVNIIPG------------------------FNGIIRDADHCVEIAR 120
           GDK+ S  +A+ A V  IP                           G     +  ++ A+
Sbjct: 1   GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60

Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQ 146
            IG+PVMIKAS GGGGKG+R    ++
Sbjct: 61  RIGFPVMIKASEGGGGKGIRQVEREE 86

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 87  KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
           K  +     +AG+        +  D +  + +    GYPV++K     G  G  +A    
Sbjct: 1   KWATSVALAKAGLPQPKT--ALATDREEALRLMEAFGYPVVLK--PVIGSWGRLLAXXXX 56

Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
                     +E    F      ++++++ P    
Sbjct: 57  XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDI 91

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 87  KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
           K  +K       +           + +  +   R+ G P++IKA     GKG+ +A   +
Sbjct: 2   KAFTKDFLARHKIPTAEY--QNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 59

Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI----QGTTYKFLIQTEKEFEYAKL 202
           EA           A      RI++E+F+       I               + +    K 
Sbjct: 60  EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKD 119

Query: 203 LPPKPKLDETKILHAPMPGLVKSVNCKVGDQIME 236
             P          ++P P +   V+ +  ++I+ 
Sbjct: 120 TGPNTG---GMGAYSPAPVVTDDVHQRTMERIIW 150

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 8/153 (5%)

Query: 86  DKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN 143
           DK  +K+L    G+        +    +     +I  ++G  V +KA+  G   G+    
Sbjct: 1   DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 60

Query: 144 NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLL 203
           N +E  E    S Q       D ++L+E+ +   R +E+        + +E         
Sbjct: 61  NAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQ 114

Query: 204 PPKPKLDETKILHAPMPGLVKSVNCKVGDQIME 236
                  +          +   +  ++  ++ +
Sbjct: 115 GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTK 147

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 91  KKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
           ++LA +E  +                 E   DIGYP ++K      GKG     + ++  
Sbjct: 6   RRLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLA 63

Query: 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           + +K    +     G  R++VE  +K    I + 
Sbjct: 64  QAWK--YAQQGGRAGAGRVIVEGVVKFDFEITLL 95

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 87  KLESKKLAKEAGVNIIPGF-----NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI 141
           KL SK L + AG+ + P             +D  +     +G PV++K S  G   GM  
Sbjct: 1   KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60

Query: 142 ANNDQEAIEGFKLS 155
              +    +  +L+
Sbjct: 61  VVAENALQDALRLA 74

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
           D+L  K+L  +  +   P    ++ +      +   +G   ++K   GG     +     
Sbjct: 1   DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRA 58

Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
            E          E   +      +VE+ I     + + 
Sbjct: 59  NE---------TEQLPAECYGECIVEQGINFSGEVSLV 87

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 86  DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
           DK  +  +AK AG+     +  +I   D    +A    YPV +K +  G   G++
Sbjct: 1   DKSLTYIVAKNAGIATPAFW--VINKDDR--PVAATFTYPVFVKPARSGSSFGVK 51

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 12/111 (10%)

Query: 77  TAECIRGMGDK----LESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
           + E I    DK     +   + K  G    P          +  E+     +PV++K   
Sbjct: 2   SLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQ--TYYPNHREMLTLPTFPVVVKIGH 59

Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
              G G     N  +  +           +        E FI     I +Q
Sbjct: 60  AHSGMGKVKVENHYDFQDIAS------VVALTQTYATAEPFIDAKYDIRVQ 104

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 87  KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
           K+ +K+  K+ G+     F  +    +   E  +    P +IKA     GKG+ I ++ +
Sbjct: 2   KVYAKRFMKKYGIRT-ARF-EVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKE 59

Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
           E IE                 +++++F+       + 
Sbjct: 60  ETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMA 96

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 9e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 89  ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKAS----AGGGGKGMRIAN 143
           ++K+L    G+    G+           E A  IG  P ++K        G   G+++ N
Sbjct: 7   QAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVN 64

Query: 144 NDQE 147
           + ++
Sbjct: 65  SKED 68

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
           + AP+ G V  +  K GD +  GQ + V+
Sbjct: 11  IPAPLAGTVSKILVKEGDTVKAGQTVLVL 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1ulza3	214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	99.8
d1vkza3	220	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.8
d2j9ga3	216	Biotin carboxylase (BC), domain 2 {Escherichia col	99.79
d1a9xa5	275	Carbamoyl phosphate synthetase (CPS), large subuni	99.78
d1a9xa6	259	Carbamoyl phosphate synthetase (CPS), large subuni	99.77
d1gsoa3	224	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.75
d1w96a3	267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	99.69
d2j9ga2	114	Biotin carboxylase (BC), N-terminal domain {Escher	99.68
d1ulza2	114	Biotin carboxylase (BC), N-terminal domain {Aquife	99.67
d1ehia2	228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	99.67
d1iowa2	210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	99.65
d1kjqa3	206	Glycinamide ribonucleotide transformylase PurT, do	99.64
d2r7ka2	238	5-formaminoimidazole-4-carboxamide ribonucleotide	99.64
d1e4ea2	211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	99.6
d1uc8a2	192	Lysine biosynthesis enzyme LysX ATP-binding domain	99.59
d3etja3	198	N5-carboxyaminoimidazole ribonucleotide synthetase	99.59
d2r85a2	235	5-formaminoimidazole-4-carboxamide ribonucleotide	99.58
d1w96a2	170	Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye	99.57
d1i7na2	206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	99.49
d2nu7b2	238	Succinyl-CoA synthetase, beta-chain, N-terminal do	99.06
d1eucb2	246	Succinyl-CoA synthetase, beta-chain, N-terminal do	98.97
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	98.23
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	98.14
d1gsaa2	192	Prokaryotic glutathione synthetase, C-domain {Esch	98.13
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.97
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	97.96
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	97.73
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	97.16
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	97.05
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	97.02
d2pbza2	213	5-formaminoimidazole-4-carboxamide ribonucleotide	97.01
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.79
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.5
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	96.42
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.37
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	96.31
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.26
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.05
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.04
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	95.92
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	95.9
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.87
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	95.87
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	95.73
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.64
d1e4ea1	130	D-alanine:D-lactate ligase VanA, N-domain {Enteroc	95.25
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	95.15
d1ehia1	132	D-alanine:D-lactate ligase VanA, N-domain {Leucono	95.07
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	94.53
d1uc8a1	88	Lysine biosynthesis enzyme LysX, N-terminal domain	92.46
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.12
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	91.21
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	88.86
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	88.65
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	84.11
d1e2wa2	64	Cytochrome f, small domain {Chlamydomonas reinhard	82.42
d1ci3m2	62	Cytochrome f, small domain {Phormidium laminosum [	81.36

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.80  E-value=3.5e-19  Score=138.74  Aligned_cols=104  Identities=44%  Similarity=0.830  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCC
Q psy10619         87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD  166 (246)
Q Consensus        87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~  166 (246)
                      |..+|++|+++|||++|+++..+.|.+++.++++++|||+||||.++++|+|+.++++.+|+..++......+.......
T Consensus         1 K~~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ig~P~vvKP~~~~~s~gv~~v~~~~el~~a~~~~~~~~~~~~~~~   80 (214)
T d1ulza3           1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRG   80 (214)
T ss_dssp             HHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHHcCCCEEEeeccccCCccceeeeccHHHHHHHHHHHHHHHHhcCCC
Confidence            78999999999999866544568999999999999999999999999999999999999999999988777665555567


Q ss_pred             ceEEEecccCcceEEEEeeeccee
Q psy10619        167 RILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       167 ~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+|||+||+|..++...++.|+.+
T Consensus        81 ~viiEe~i~G~e~~~~~~~~d~~~  104 (214)
T d1ulza3          81 DLLLEKFIENPKHIEYQVLGDKHG  104 (214)
T ss_dssp             CEEEEECCCSCEEEEEEEEECTTS
T ss_pred             CceeheeecCcceeeEEEEEcCCC
Confidence            899999999434445556666654

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.2e-19  Score=141.86  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      +|..+|++|+++|||+|++.  .+++.+++.++++++|||+||||.+++||+||++|+|.+++.++++.+..........
T Consensus         1 sK~~~K~~l~~~gIptp~~~--~~~~~~e~~~~~~~ig~PvVvKP~~~~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~   78 (220)
T d1vkza3           1 SKVYAKRFMKKYGIRTARFE--VAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVK   78 (220)
T ss_dssp             CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCC
T ss_pred             CHHHHHHHHHHCCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeccccccccceeeccHHHHHHHhhhhcccccccccc
Confidence            58999999999999999965  7899999999999999999999999999999999999999999999876532222234


Q ss_pred             CceEEEecccCcceEEEEeeeccee
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++|+|+. |.|++++.+.++..
T Consensus        79 ~~vliEe~i~-g~e~~v~~~~~~~~  102 (220)
T d1vkza3          79 GPVVIDEFLA-GNELSAMAVVNGRN  102 (220)
T ss_dssp             SCEEEEECCC-SEEEEEEEEEETTE
T ss_pred             ceEeeecccc-cccceeEEEEeCCE
Confidence            6799999999 89999999887665

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.6e-19  Score=138.74  Aligned_cols=105  Identities=42%  Similarity=0.686  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHhCCCCCCCC-ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC
Q psy10619         86 DKLESKKLAKEAGVNIIPGF-NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG  164 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~-~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~  164 (246)
                      ||..+|++|+++|||++|++ ...+++.+++.++++++|||+||||.+++||+|+.++++.+|+.++++.....+...++
T Consensus         1 dK~~~~~~~~~~GvP~vp~~~~~~~~s~dea~~~a~~iG~PvivKp~~~~ggrGv~~v~~~~el~~a~~~~~~ea~~~~~   80 (216)
T d2j9ga3           1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFS   80 (216)
T ss_dssp             SHHHHHHHHHHHTCCBCCBCSSCCCSCHHHHHHHHHHHCSSEEEEEEEEETTEEEEEECSHHHHHHHHHHHHHHTC--CC
T ss_pred             CHHHHHHHHHHcCcCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEecccccCCceeEeecchhHHHHHHHHHHHHHHHhcC
Confidence            89999999999999976653 23578999999999999999999999999999999999999999999988776655666


Q ss_pred             CCceEEEecccCcceEEEEeeeccee
Q psy10619        165 DDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       165 ~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ++.+++|+|+.+.+++.+.++.|+.+
T Consensus        81 ~~~vlvE~~i~g~~~~~~~i~~dg~~  106 (216)
T d2j9ga3          81 NDMVYMEKYLENPRHVEIQVLADGQG  106 (216)
T ss_dssp             CCCEEEEECCSSCEEEEEEEEEESSS
T ss_pred             CCceEeeeeecCcccceeEEEEcCCC
Confidence            78899999999667888888888765

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.4e-19  Score=142.17  Aligned_cols=153  Identities=18%  Similarity=0.241  Sum_probs=115.0

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      ||.++|++|+++|||+|++.  .+++.+++.++++++|||+||||.+++||+|+.++++.+|+.+++++....    +++
T Consensus         1 Dr~~~r~~~~~~gip~~~~~--~~~~~~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~~~el~~~~~~a~~~----~~~   74 (275)
T d1a9xa5           1 DRRRFDVAMKKIGLETARSG--IAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL----SPT   74 (275)
T ss_dssp             SHHHHHHHHHHTTCCCCSEE--EESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH----CTT
T ss_pred             CHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeeCHHHHHHHHHHHHhh----CCC
Confidence            78999999999999999965  789999999999999999999999999999999999999999999886643    446


Q ss_pred             CceEEEecccCcceEEEEeeecceee---c--chhhh----hhhhcCC--CCCCCCcc--cceeccccceeeeeeecCCC
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYKFLI---Q--TEKEF----EYAKLLP--PKPKLDET--KILHAPMPGLVKSVNCKVGD  232 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~~~v---~--~~~~~----~~~~~~~--~~~~~~~~--~~l~sp~pg~i~~l~~~~G~  232 (246)
                      ..++||+|+.+.+|+++++++++.+.   .  .++.+    ..++...  |.+..+..  ..++..+..++..+++..|-
T Consensus        75 ~~v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~aP~~~L~~~~~~~i~~~a~~i~~~lg~~~G~  154 (275)
T d1a9xa5          75 KELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGG  154 (275)
T ss_dssp             SCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred             CcEEEeeecCCchhheeeeEEecCCCEEEEEeeccccccCcccCceeEEcCCCcCCHHHHHHHHHHHHHHHHHcCceECc
Confidence            78999999996689999999987552   1  12222    1222222  33322222  44666666667777776552


Q ss_pred             e-----e-eCCCeEEEEc
Q psy10619        233 Q-----I-MEGQELCVVG  244 (246)
Q Consensus       233 ~-----v-~~g~~~~v~e  244 (246)
                      .     + .++..+.+||
T Consensus       155 ~~~ef~~~~~~~~~~~iE  172 (275)
T d1a9xa5         155 SNVQFAVNPKNGRLIVIE  172 (275)
T ss_dssp             EEEEEEECTTTCCEEEEE
T ss_pred             eEEEEEEeCCCCEEEEEE
Confidence            2     2 2567777777

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.7e-19  Score=143.60  Aligned_cols=151  Identities=15%  Similarity=0.245  Sum_probs=98.7

Q ss_pred             HHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCce
Q psy10619         89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRI  168 (246)
Q Consensus        89 ~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~  168 (246)
                      +++++|+++|||+|++.  .+++.+++.++++++|||+||||.++.||+|+.+++|.+|++.++......    .++..+
T Consensus         1 rF~~~l~~lgi~~p~~~--~v~s~~ea~~~a~~iGfPvivKps~~~gG~G~~iv~~~~el~~~~~~a~~~----~~~~~v   74 (259)
T d1a9xa6           1 RFQHAVERLKLKQPANA--TVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSV----SNDAPV   74 (259)
T ss_dssp             HHHHHHHHHTCCCCCEE--ECCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------
T ss_pred             ChHHHHHHCCCCCCCce--EECCHHHHHHHHHHhCCCEEEEECCCCCCCccEeecCHHHHHHHhhhhhcc----cccchh
Confidence            47899999999999975  789999999999999999999999999999999999999999999876543    235679


Q ss_pred             EEEecccCcceEEEEeeecceeecchhh-----------hhhhhcCCCCC-CCCcccceeccccceeeeeeecCC---Ce
Q psy10619        169 LVEKFIKNPRHIEIQGTTYKFLIQTEKE-----------FEYAKLLPPKP-KLDETKILHAPMPGLVKSVNCKVG---DQ  233 (246)
Q Consensus       169 lve~~i~~g~e~~v~v~~d~~~v~~~~~-----------~~~~~~~~~~~-~~~~~~~l~sp~pg~i~~l~~~~G---~~  233 (246)
                      ++|+|+.+++|+++++++|+..+.....           .+.....||.. .......++..+..+...++++--   +.
T Consensus        75 lie~~i~~~~Eiev~~i~Dg~~~~i~~i~e~i~~~gvhsgds~~~~p~~~l~~~~~~~l~~~a~kia~~l~~~G~~~vef  154 (259)
T d1a9xa6          75 LLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQF  154 (259)
T ss_dssp             EEEBCCTTCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hhhhhcCCCeEEEEEEEEeCCcEEEEeeeeccccCcceeEeccccccCccCCHHHHHHHHHHHHHHHHHhhhccceeEEE
Confidence            9999999889999999999876432111           11111122222 111224455555555555555211   44


Q ss_pred             eeCCCeEEEEcc
Q psy10619        234 IMEGQELCVVGK  245 (246)
Q Consensus       234 v~~g~~~~v~e~  245 (246)
                      .-+++.+.+||.
T Consensus       155 ~v~~~~~y~iEv  166 (259)
T d1a9xa6         155 AVKNNEVYLIEV  166 (259)
T ss_dssp             EECSSCEEEEEE
T ss_pred             EEECCEEEEEEc
Confidence            446778888884

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.3e-19  Score=138.69  Aligned_cols=103  Identities=18%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      +|..+|++|+++|||+|++.  .+++.+++.+++++++||+||||..++||+||+++++.+++.++++.+..........
T Consensus         1 SK~f~K~~~~~~~IPt~~~~--~~~~~~ea~~~~~~~~~P~VvK~~~~~~gkGv~i~~~~~e~~~a~~~~~~~~~~~~~~   78 (224)
T d1gsoa3           1 SKAFTKDFLARHKIPTAEYQ--NFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG   78 (224)
T ss_dssp             CHHHHHHHHHHTTCCBCCEE--EESSSSHHHHHHHHHCSSEEEEC------CCEEEESSHHHHHHHHTTTTCSCCTTCTT
T ss_pred             CHHHHHHHHHHcCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEeCCcccccceeeehhHHHHHHHHHHHHhcccccccC
Confidence            58999999999999999964  7899999999999999999999999999999999999999999998875421111123


Q ss_pred             CceEEEecccCcceEEEEeeecceee
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYKFLI  191 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~~~v  191 (246)
                      ..++||+|+. |.|+++.++.|+..+
T Consensus        79 ~~vliEefl~-G~E~s~~~i~dg~~~  103 (224)
T d1gsoa3          79 HRIVIEEFLD-GEEASFIVMVDGEHV  103 (224)
T ss_dssp             CCEEEEECCC-EEEEEEEEEEESSCE
T ss_pred             ceEEeecccc-cccceeEEEeccCce
Confidence            5799999999 999999999887653

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.1e-16  Score=128.48  Aligned_cols=102  Identities=34%  Similarity=0.563  Sum_probs=84.4

Q ss_pred             cCHHHHHHHHHHhCCCCCCCC------------------------ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619         85 GDKLESKKLAKEAGVNIIPGF------------------------NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR  140 (246)
Q Consensus        85 ~dK~~~~~~l~~~gip~p~~~------------------------~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~  140 (246)
                      .||..+|++++++|||+.++.                        ...+.+.+++..+++++|||+||||.+++||+|+.
T Consensus         1 gdK~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~igfPvvVKP~~~~gs~Gv~   80 (267)
T d1w96a3           1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIR   80 (267)
T ss_dssp             CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEE
T ss_pred             CCHHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhcCCCEEEEeecccCCeeEE
Confidence            378888888888888885521                        12467899999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ++++.+|+.++++.+...    ++++.+||||||+|.+++.+.++.++.+
T Consensus        81 iv~~~~el~~a~~~a~~~----s~~~~vlVEe~I~G~~~~~~~~~~~~~~  126 (267)
T d1w96a3          81 QVEREEDFIALYHQAANE----IPGSPIFIMKLAGRARHLEVQLLADQYG  126 (267)
T ss_dssp             EECSHHHHHHHHHHHHHH----STTCCEEEEECCCSCEEEEEEEEECTTS
T ss_pred             eecccchhhhhhhhhhhh----cccchhhhhhhccchhhhhhhheeccCc
Confidence            999999999999887653    3357899999999667777777777654

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.5e-17  Score=112.10  Aligned_cols=84  Identities=50%  Similarity=0.810  Sum_probs=80.1

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +||++.|.+++|.++||+.+.+++.....+|++.+.+++++++.++|+|+|++||++|++.+++.+++.|+.++||++++
T Consensus        30 avys~~D~~~~h~~~ade~v~lg~~~~~~sYl~~~~Ii~~A~~~~~dAiHPGyGFLSEn~~Fa~~~~~agi~FIGP~~~~  109 (114)
T d2j9ga2          30 AVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAET  109 (114)
T ss_dssp             EEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHH
T ss_pred             EEeccccccccceecCCceeecCCCchhhhhcCHHHHHHHHHHhCCceeecchhhhhhhHHHHHHHHHCCCEEECcCHHH
Confidence            48999999999999999999998877778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q psy10619         81 IRGM   84 (246)
Q Consensus        81 ~~~~   84 (246)
                      ++.+
T Consensus       110 i~~m  113 (114)
T d2j9ga2         110 IRLM  113 (114)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8865

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.67  E-value=3.8e-17  Score=111.91  Aligned_cols=85  Identities=46%  Similarity=0.751  Sum_probs=79.7

Q ss_pred             CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      +|||+.|.+++++++||+.+.+++.+ ..+|++.+.+++++++.++|+|+|++||++|++.+++.+++.|+.++||++++
T Consensus        30 av~s~~D~~s~~~~~ad~~~~ig~~~-~~sYln~~~Ii~~A~~~~~daihPGyGFLSEna~Fa~~~~~~gi~FIGP~~~~  108 (114)
T d1ulza2          30 AIYNEVESTARHVKLADEAYMIGTDP-LDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKV  108 (114)
T ss_dssp             EEECGGGTTCHHHHHSSEEEECCSST-THHHHCHHHHHHHHHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHH
T ss_pred             EEecchhhcCcchhhcceeeecCCCh-hhhhhcHHHHHHHHHHhCCCeEecchhhhhhHHHHHHHHHHCCCEEECcCHHH
Confidence            47999999999999999999997643 56899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q psy10619         81 IRGMGD   86 (246)
Q Consensus        81 ~~~~~d   86 (246)
                      ++.+.|
T Consensus       109 i~~mGD  114 (114)
T d1ulza2         109 IELMGD  114 (114)
T ss_dssp             HHHHHS
T ss_pred             HHHhCC
Confidence            998765

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=99.67  E-value=8.8e-17  Score=125.94  Aligned_cols=97  Identities=23%  Similarity=0.305  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCC----HHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRD----ADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~----~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      ||..+|++|+++|||+|++.  .++.    .+.+..+.+.+|||+|+||.+|+||.||.+++|.+|+..+++.+..    
T Consensus         1 dK~~~k~~l~~~gi~tp~~~--~~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~~~el~~~~~~~~~----   74 (228)
T d1ehia2           1 DKALTKELLTVNGIRNTKYI--VVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ----   74 (228)
T ss_dssp             SHHHHHHHHHTTTCCCCCEE--EECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT----
T ss_pred             CHHHHHHHHHHcCCCCCCEE--EEchhhcChHHHHHHHHHhCCCEEEEEeccCCCccceeccccchhhhhhhhhcc----
Confidence            89999999999999999965  3432    2245566788999999999999999999999999999999887643    


Q ss_pred             hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                       . ...+++|+|+.+++|+++.+..++..
T Consensus        75 -~-~~~~liee~i~g~~e~~~~~~~~~~~  101 (228)
T d1ehia2          75 -Y-DYKVLIEEAVNGARELEVGVIGNDQP  101 (228)
T ss_dssp             -T-CSCEEEEECCCCSCEEEEEEEESSSC
T ss_pred             -c-ccccccceEEeccceEEEEEeeCCCc
Confidence             1 46799999999778999988877654

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=99.65  E-value=1.5e-16  Score=122.98  Aligned_cols=95  Identities=25%  Similarity=0.404  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCccccCC-------HHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619         87 KLESKKLAKEAGVNIIPGFNGIIRD-------ADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA  159 (246)
Q Consensus        87 K~~~~~~l~~~gip~p~~~~~~~~~-------~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~  159 (246)
                      |..++++|+++|||+|++.  .+++       .+++......++||+|+||.+|++|.|+.+++|.+++.++++....  
T Consensus         1 K~~tk~~~~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--   76 (210)
T d1iowa2           1 KLRSKLLWQGAGLPVAPWV--ALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ--   76 (210)
T ss_dssp             HHHHHHHHHHTTCCBCCEE--EEEHHHHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT--
T ss_pred             CHHHHHHHHHcCCCCCCeE--EEechhhcccchHHHHHHHHhcCCCEEEeeccccCceecccccchhhhhHHHHHhhc--
Confidence            7899999999999999975  4432       3445556678999999999999999999999999999999876542  


Q ss_pred             HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                          .+..+++|+|+. |.|+++.+.++...
T Consensus        77 ----~~~~vlve~~i~-g~e~~~~v~~~~~~  102 (210)
T d1iowa2          77 ----HDEEVLIEKWLS-GPEFTVAILGEEIL  102 (210)
T ss_dssp             ----TCSEEEEEECCC-CCEEEEEEETTEEC
T ss_pred             ----cCcccccccccc-CceeEEEeecCccc
Confidence                257899999999 99999999887553

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=3.6e-16  Score=120.27  Aligned_cols=101  Identities=21%  Similarity=0.285  Sum_probs=80.9

Q ss_pred             CHHHHHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC
Q psy10619         86 DKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG  164 (246)
Q Consensus        86 dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~  164 (246)
                      ||..+|+++ +++|||+|++.  .+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.+++........  ..
T Consensus         1 ~~~~~rrla~~~~Gip~p~~~--~v~s~~dl~~~~~~ig~PvVvKP~~g~gs~gv~~v~~~~el~~a~~~~~~~~~--~~   76 (206)
T d1kjqa3           1 NREGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGR--AG   76 (206)
T ss_dssp             SHHHHHHHHHTTSCCCBCCEE--EESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSG--GG
T ss_pred             ChHHHHHHHHHHCCCCCCCCe--EECCHHHHHHHHHHhCCCEEEeeccCCccCCceEEcCHHHHHHHHHHHHhhcc--cC
Confidence            688889977 57999999965  79999999999999999999999999999999999999999999987664322  22


Q ss_pred             CCceEEEecccCcceEEEEeeeccee
Q psy10619        165 DDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       165 ~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ...+++|+++.+..++.+.+..+..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (206)
T d1kjqa3          77 AGRVIVEGVVKFDFEITLLTVSAVDG  102 (206)
T ss_dssp             CCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred             cceeeeeeccccceeeeeeeeecCCC
Confidence            45678888888666777777665543

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=5.3e-17  Score=128.18  Aligned_cols=90  Identities=19%  Similarity=0.240  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhc-C
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF-G  164 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~-~  164 (246)
                      ||..+|++|+++|||+|+.+    ..       +++++||+||||..++||+|+++++|.+++.++++.+.......+ .
T Consensus         1 DK~~~k~~l~~~Gip~P~~~----~~-------~~~i~~PvVVKP~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~   69 (238)
T d2r7ka2           1 ERSLEGKLLREAGLRVPKKY----ES-------PEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDED   69 (238)
T ss_dssp             CHHHHHHHHHHTTCCCCCEE----SS-------GGGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHH
T ss_pred             CHHHHHHHHHHCCCCCcccc----cC-------HhHCCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence            89999999999999999853    22       356899999999999999999999999999999988765321110 0


Q ss_pred             CCceEEEecccCcceEEEEeeec
Q psy10619        165 DDRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       165 ~~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      .+.+++|+||+ |.|+++.++.+
T Consensus        70 ~~~v~vEe~i~-G~e~~v~~~~~   91 (238)
T d2r7ka2          70 IANAHIEEYVV-GTNFCIHYFYS   91 (238)
T ss_dssp             HHHCEEEECCC-SEEEEEEEEEE
T ss_pred             CCcEEEEEeec-CceEEEEEeec
Confidence            24699999999 88888877653

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=99.60  E-value=2.4e-16  Score=121.97  Aligned_cols=94  Identities=23%  Similarity=0.303  Sum_probs=79.1

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      ||..++.+++++|||+|++.  .+++.++.  ....++||+|+||.+|+||+||.+|+|.+|+..+++.+..      ..
T Consensus         1 DK~~~~~~~~~~Gi~tP~~~--~~~~~~~~--~~~~~~fP~viKP~~gg~s~Gv~~v~~~~el~~~~~~~~~------~~   70 (211)
T d1e4ea2           1 DKSLTYIVAKNAGIATPAFW--VINKDDRP--VAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ------YD   70 (211)
T ss_dssp             SHHHHHHHHHHTTCBCCCEE--EECTTCCC--CGGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT------TC
T ss_pred             CHHHHHHHHHHCCCCCCCeE--EECchhHH--HHHhcCCCEEEeeccccCcchhccccccccchhhcccccc------cc
Confidence            89999999999999999965  55544332  3457899999999999999999999999999999887653      24


Q ss_pred             CceEEEecccCcceEEEEeeeccee
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++|+|++ |.++++.++.+...
T Consensus        71 ~~~~~e~~~~-~~~~~~~~~~~~~~   94 (211)
T d1e4ea2          71 SKILIEQAVS-GCEVGCAVLGNSAA   94 (211)
T ss_dssp             SSEEEEECCC-SEEEEEEEEEETTC
T ss_pred             cccccccccc-cccceeeccCCCcc
Confidence            6799999999 89999998876554

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=2.8e-16  Score=119.55  Aligned_cols=94  Identities=14%  Similarity=0.256  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCC
Q psy10619         87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD  166 (246)
Q Consensus        87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~  166 (246)
                      |+.++++|+++|||+|+++  .+.+.+++.+++++++||+|+||..+++|+||..+.+.++..........  .......
T Consensus         1 K~~~~~~l~~~GipvP~t~--~~~~~~~~~~~~~~~g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~~~~~~--~~~~~~~   76 (192)
T d1uc8a2           1 KWATSVALAKAGLPQPKTA--LATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEV--LGGFQHQ   76 (192)
T ss_dssp             HHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTT
T ss_pred             CHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhCCCEEEECCcCCcccceeeccccccchhhHHHHHH--HhccCCC
Confidence            8899999999999999975  78999999999999999999999999999999876665555444332211  1123356


Q ss_pred             ceEEEecccCcceEEEEee
Q psy10619        167 RILVEKFIKNPRHIEIQGT  185 (246)
Q Consensus       167 ~~lve~~i~~g~e~~v~v~  185 (246)
                      .+++|+||+ |.++.+.++
T Consensus        77 ~~lvqefi~-g~~~~~~v~   94 (192)
T d1uc8a2          77 LFYIQEYVE-KPGRDIRVF   94 (192)
T ss_dssp             CEEEEECCC-CSSCCEEEE
T ss_pred             CEEEEEecC-CCCeeEEEE
Confidence            799999999 444344443

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=6e-16  Score=118.31  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      ||..||++|+++|||+|++.  .+.+.+++.++++++|||+|+||..+++|.|..++.+.+++..++..         ..
T Consensus         1 DK~~~K~~l~~~GIptp~~~--~v~s~~d~~~~~~~ig~P~vvKp~~~~~~~~~~~v~~~~~~~~~~~~---------~~   69 (198)
T d3etja3           1 DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAE---------CY   69 (198)
T ss_dssp             SHHHHHHHHHHTTCCBCCEE--EECCGGGHHHHHHHHCSCEEEEESSSCBTTBSEEEECGGGGGGSCGG---------GT
T ss_pred             CHHHHHHHHHHCCcCCCCce--EECCHHHHHHHHHHcCCCeeeeecccccccceeeecchhhHHHHHhc---------cC
Confidence            89999999999999999965  78999999999999999999999988877666665555554433322         14


Q ss_pred             CceEEEecccCcceEEEEeeeccee
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      ..+++|+|+.++.++++.+..++.+
T Consensus        70 ~~~i~ee~i~~~~~~~~~~~~~~~~   94 (198)
T d3etja3          70 GECIVEQGINFSGEVSLVGARGFDG   94 (198)
T ss_dssp             TTEEEEECCCCSEEEEEEEEECTTS
T ss_pred             ceEEEeeeccccccccceeeecccc
Confidence            6799999999788888888876554

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.58  E-value=9.1e-16  Score=120.66  Aligned_cols=89  Identities=19%  Similarity=0.226  Sum_probs=69.1

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD  165 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~  165 (246)
                      ||.+||++|+++|||+|+.+    ..       +++++||+||||.+++||+|+++++|.+++.+.++.+........ .
T Consensus         1 DK~~~k~~l~~~Gip~P~~~----~~-------~~~i~~P~IVKP~~g~gs~Gv~~v~~~~e~~~~~~~~~~~~~~~~-~   68 (235)
T d2r85a2           1 DRNLERKWLKKAGIRVPEVY----ED-------PDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKED-L   68 (235)
T ss_dssp             SHHHHHHHHHHTTCCCCCBC----SC-------GGGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGG-C
T ss_pred             CHHHHHHHHHHcCCCCchhh----hC-------HHHcCCCEEEEECCCCCCCCeEEEechHHHHHHHHHHHhhhhhCC-C
Confidence            89999999999999999843    22       345799999999999999999999999999999987653211111 3


Q ss_pred             CceEEEecccCcceEEEEeeec
Q psy10619        166 DRILVEKFIKNPRHIEIQGTTY  187 (246)
Q Consensus       166 ~~~lve~~i~~g~e~~v~v~~d  187 (246)
                      ..+++|+|++ |.++.+..+.+
T Consensus        69 ~~~iiee~i~-G~~~~~~~~~~   89 (235)
T d2r85a2          69 KNIQIQEYVL-GVPVYPHYFYS   89 (235)
T ss_dssp             CSEEEEECCC-CEEEEEEEEEE
T ss_pred             cchhHHhhcC-CeEEEEEEeec
Confidence            6799999999 88888887655

>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Acetyl-CoA carboxylase, BC-N subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.5e-15  Score=110.36  Aligned_cols=83  Identities=29%  Similarity=0.477  Sum_probs=76.9

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHc--CCeEeCCCHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEE--GVVFIGPTAE   79 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~--g~~~~g~~~~   79 (246)
                      +++|.|.+++++++||+.+.+++.....+|++.+.|++++++.++|+|+|++||++|++.+++.++..  |+.++||+++
T Consensus        86 ~~~d~D~~s~~v~~aD~~v~l~g~~~~~sYLn~~~II~~A~~~~~DAIHPGYGFLSEn~~FA~~~~~a~~giiFIGPs~~  165 (170)
T d1w96a2          86 TPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGN  165 (170)
T ss_dssp             CHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHH
T ss_pred             ecCccccccchhhhhhhhhccCCCCccchhhhHHHHHHHHHhcCCCEEEechhhhhhCHHHHHHHHHhcCCCEEECcCHH
Confidence            56678899999999999999998777789999999999999999999999999999999999999876  9999999999


Q ss_pred             HHHHh
Q psy10619         80 CIRGM   84 (246)
Q Consensus        80 ~~~~~   84 (246)
                      +++.+
T Consensus       166 ~i~~m  170 (170)
T d1w96a2         166 AMRSL  170 (170)
T ss_dssp             HHHHS
T ss_pred             HHHhC
Confidence            98753

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.6e-14  Score=111.19  Aligned_cols=109  Identities=16%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             CCHHHHHHhcCHHHH--HHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHH
Q psy10619         76 PTAECIRGMGDKLES--KKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFK  153 (246)
Q Consensus        76 ~~~~~~~~~~dK~~~--~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~  153 (246)
                      ++++++..|.||..+  +.++...+++.|........+..+..+.....+||+|+||..|++|+||.++++.++++.++.
T Consensus         1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~   80 (206)
T d1i7na2           1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIAS   80 (206)
T ss_dssp             SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeecccccchhHHhhhcCCceEEecCCCCCCCCeEEEeecchhhhHHH
Confidence            578999999999542  333333333333211101112222333445678999999999999999999999999999888


Q ss_pred             HHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619        154 LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL  190 (246)
Q Consensus       154 ~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~  190 (246)
                      .+...      ...+++|+||+++.|+++.+++++..
T Consensus        81 ~~~~~------~~~~~vqe~I~~~~dirv~vig~~~~  111 (206)
T d1i7na2          81 VVALT------QTYATAEPFIDAKYDIRVQKIGNNYK  111 (206)
T ss_dssp             HHHHH------TCCEEEEECCCEEEEEEEEEETTEEE
T ss_pred             HHhhc------cCeEEEEEeecccceEEEEEEeccee
Confidence            77542      46799999998678999999977755

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.4e-10  Score=89.22  Aligned_cols=101  Identities=18%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC-cEEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619         87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEAAA  161 (246)
Q Consensus        87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~~~  161 (246)
                      .+..|++|+++|||+|++.  .+++.+++.+++.++|| |+|+|.....+++    ||.++.+.+|.......+......
T Consensus         5 E~eaK~lL~~yGIpvp~~~--~a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~~a~~~~~~~~~   82 (238)
T d2nu7b2           5 EYQAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLV   82 (238)
T ss_dssp             HHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEEC
T ss_pred             HHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHHHHHHHhCccee
Confidence            6788999999999999975  78999999999999995 9999974333333    788888988887777765431110


Q ss_pred             hc-------CCCceEEEecccCcceEEEEeeecce
Q psy10619        162 SF-------GDDRILVEKFIKNPRHIEIQGTTYKF  189 (246)
Q Consensus       162 ~~-------~~~~~lve~~i~~g~e~~v~v~~d~~  189 (246)
                      ..       .-..+++|++++.++|+.+.+..|..
T Consensus        83 ~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~  117 (238)
T d2nu7b2          83 TYQTDANGQPVNQILVEAATDIAKELYLGAVVDRS  117 (238)
T ss_dssp             CTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred             eeccccCCcccceeeecceeecccceEEEEEEecc
Confidence            00       01358999999989999999887763

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=8.6e-10  Score=86.52  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC-cEEEEeccCC---C--------CceeEEeCCHHHHHHHHH
Q psy10619         86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKASAGG---G--------GKGMRIANNDQEAIEGFK  153 (246)
Q Consensus        86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~g~---g--------~~gv~~v~~~~el~~~~~  153 (246)
                      +.+..|++|+++|||+|++.  .+++.+++.++++++|| |+|+|+.-..   |        ..||..++|.+|+.++++
T Consensus         5 ~E~eaK~lL~~yGIpvp~~~--~a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee~~~~a~   82 (246)
T d1eucb2           5 QEYQSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK   82 (246)
T ss_dssp             CHHHHHHHHHTTTCCCCCEE--EESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHHhCCCeEEEEEeeccccccccccccCCcceEEEecChhHHHHHhh
Confidence            58889999999999999965  78999999999999996 8999985221   1        136777899999998887


Q ss_pred             HHHHHHHhh--cC-----CCceEEEecccCcceEEEEeeecc
Q psy10619        154 LSSQEAAAS--FG-----DDRILVEKFIKNPRHIEIQGTTYK  188 (246)
Q Consensus       154 ~~~~~~~~~--~~-----~~~~lve~~i~~g~e~~v~v~~d~  188 (246)
                      .+.......  .+     -..+++|++++.+.|+.+++..|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~  124 (246)
T d1eucb2          83 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR  124 (246)
T ss_dssp             TTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEG
T ss_pred             hhhcchhhhhhccccccccccceehhcccccceeeeeeeecc
Confidence            654311100  00     246899999998999999998875

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=98.23  E-value=7.7e-07  Score=56.10  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ...++|||||++.++.++.||.|++||.|+++|-
T Consensus         8 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~   41 (77)
T d1dcza_           8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA   41 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred             CCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEc
Confidence            3579999999999999999999999999999983

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1.1e-06  Score=59.59  Aligned_cols=76  Identities=16%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             cCCCCCCChhh--hccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619          3 FPDPCVFQRHV--KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC   80 (246)
Q Consensus         3 ~~d~~~~~~~~--~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~   80 (246)
                      ....||++...  .+||+.|+.|        ++.+.+.++++++++|.|++.+|+.. .-.++..|++.|++++|.++++
T Consensus        43 liN~NPeTVstd~d~aD~lYfep--------lt~e~v~~Ii~~E~p~~ii~~~GGQt-alnla~~L~~~gv~iLGt~~~~  113 (121)
T d1a9xa4          43 MVNCNPETVSTDYDTSDRLYFEP--------VTLEDVLEIVRIEKPKGVIVQYGGQT-PLKLARALEAAGVPVIGTSPDA  113 (121)
T ss_dssp             EECCCTTSSTTSTTSSSEEECCC--------CSHHHHHHHHHHHCCSEEECSSSTHH-HHTTHHHHHHTTCCBCSSCHHH
T ss_pred             EEecChhhhhcChhhcCceEEcc--------CCHHHHHHHHHHhCCCEEEeehhhhh-HHHHHHHHHHcCCcEECCCHHH
Confidence            34556665554  5799999876        79999999999999999999987532 1245677899999999999999


Q ss_pred             HHHhcCH
Q psy10619         81 IRGMGDK   87 (246)
Q Consensus        81 ~~~~~dK   87 (246)
                      +..+.|+
T Consensus       114 Id~aEDR  120 (121)
T d1a9xa4         114 IDRAEDR  120 (121)
T ss_dssp             HHHHHSH
T ss_pred             HHHHHCc
Confidence            9998886

>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: Prokaryotic glutathione synthetase, C-domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=3.3e-06  Score=62.98  Aligned_cols=83  Identities=7%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC--cc
Q psy10619        101 IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN--PR  178 (246)
Q Consensus       101 ~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~  178 (246)
                      +|+++  ...+.+++.++.++.| |+|+||..|++|+|+.++.+.+..........    .......+++|+|++.  +.
T Consensus        13 ~P~Tl--it~~~~~~~~f~~~~g-~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~~~~   85 (192)
T d1gsaa2          13 TPETL--VTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETL----TEHGTRYCMAQNYLPAIKDG   85 (192)
T ss_dssp             SCCEE--EESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHH----TTTTTSCEEEEECCGGGGGC
T ss_pred             CCCeE--EECCHHHHHHHHHHcC-CeEEEEcCCCeEEEEEEeecCchhhhHHHHHH----HhcCccccccccccccccCc
Confidence            68865  6899999999999886 99999999999999999865443222221111    1122456888999864  67


Q ss_pred             eEEEEeeeccee
Q psy10619        179 HIEIQGTTYKFL  190 (246)
Q Consensus       179 e~~v~v~~d~~~  190 (246)
                      ++++.+++++..
T Consensus        86 d~Rv~vv~~~~~   97 (192)
T d1gsaa2          86 DKRVLVVDGEPV   97 (192)
T ss_dssp             EEEEEEETTEEC
T ss_pred             eeEEEEECCcce
Confidence            999998887654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1.7e-05  Score=53.45  Aligned_cols=74  Identities=15%  Similarity=0.220  Sum_probs=60.4

Q ss_pred             CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619          2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI   81 (246)
Q Consensus         2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~   81 (246)
                      ++.|.++++|+..+||+++..       +|.|.+.+.++++++++|+|..-+  ..-.....+.+++.|+++. |+++++
T Consensus        38 ~v~d~~~~~PA~~va~~~i~~-------~~~d~~~l~~~~~~~~~DviT~E~--EnI~~~~L~~le~~g~~v~-Ps~~al  107 (111)
T d1kjqa2          38 IAVDRYADAPAMHVAHRSHVI-------NMLDGDALRRVVELEKPHYIVPEI--EAIATDMLIQLEEEGLNVV-PCARAT  107 (111)
T ss_dssp             EEEESSTTCGGGGGSSEEEEC-------CTTCHHHHHHHHHHHCCSEEEECS--SCSCHHHHHHHHHTTCEES-SCHHHH
T ss_pred             EEEcCCCCCchhhcCCeEEEC-------CCCCHHHHHHHHHhhCCceEEEEe--cCcCHHHHHHHHHCCCeEC-CCHHHH
Confidence            356889999999999999975       468899999999999999996444  2233567788899999977 999999


Q ss_pred             HHhc
Q psy10619         82 RGMG   85 (246)
Q Consensus        82 ~~~~   85 (246)
                      ++|+
T Consensus       108 ~it~  111 (111)
T d1kjqa2         108 KLTM  111 (111)
T ss_dssp             HHHH
T ss_pred             HhhC
Confidence            8863

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.3e-06  Score=54.14  Aligned_cols=32  Identities=31%  Similarity=0.630  Sum_probs=29.5

Q ss_pred             cceecccccee-------eeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLV-------KSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i-------~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++|||+|.+       .++.++.||.|++||+|++||
T Consensus         5 ~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iE   43 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE   43 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred             CEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEE
Confidence            45999999999       578899999999999999998

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2.5e-05  Score=53.44  Aligned_cols=73  Identities=26%  Similarity=0.260  Sum_probs=55.1

Q ss_pred             cCCCCCCChhhh--ccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHH------HHHHHcCCeEe
Q psy10619          3 FPDPCVFQRHVK--LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFV------SRLKEEGVVFI   74 (246)
Q Consensus         3 ~~d~~~~~~~~~--~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~------~~~~~~g~~~~   74 (246)
                      ....||++....  +||+.|+.|        ++.+.+.++++++++|+|++.+|+.... .++      ..+++.|++++
T Consensus        46 liN~NP~TVstd~d~aD~lYfeP--------lt~e~v~~Ii~~E~pd~il~~~GGQtal-nla~~L~~~giL~~~~v~iL  116 (127)
T d1a9xa3          46 NVNSNPATIMTDPEMADATYIEP--------IHWEVVRKIIEKERPDAVLPTMGGQTAL-NCALELERQGVLEEFGVTMI  116 (127)
T ss_dssp             EECSCTTCGGGCGGGSSEEECSC--------CCHHHHHHHHHHHCCSEEECSSSHHHHH-HHHHHHHHTTHHHHHTCEEC
T ss_pred             EecCchHhhhcChhhcceeeeec--------CCHHHHHHHHHHhCcCCeEEEeeeehHh-HHHHHHHHcCcHHhcCCeEE
Confidence            345666665444  799999876        7999999999999999999998752111 122      23567789999


Q ss_pred             CCCHHHHHHh
Q psy10619         75 GPTAECIRGM   84 (246)
Q Consensus        75 g~~~~~~~~~   84 (246)
                      |.+.+++..+
T Consensus       117 Gt~~~sId~a  126 (127)
T d1a9xa3         117 GATADAIDKA  126 (127)
T ss_dssp             SSCHHHHHHH
T ss_pred             CCCHHHHHHh
Confidence            9999998764

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00026  Score=44.31  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..++||..|.+.++.++.||.|..||.|+.||
T Consensus        49 ~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            56999999999999999999999999999997

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.02  E-value=0.00022  Score=44.65  Aligned_cols=32  Identities=34%  Similarity=0.600  Sum_probs=26.9

Q ss_pred             ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      .+.||..|.+.++.++.||.|..||.|+.||-
T Consensus        43 ~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   74 (79)
T d1iyua_          43 EVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence            47888888888888888888888888888874

>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=97.01  E-value=7.2e-05  Score=54.73  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=42.5

Q ss_pred             HHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCce
Q psy10619         89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRI  168 (246)
Q Consensus        89 ~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~  168 (246)
                      ..+++|+++|||.|+-    .. ++++     +..-|++||-....|++|.+++.|.++.+....          ...++
T Consensus         2 l~~k~Le~AGip~Pk~----~~-Pedi-----~~d~~ViVK~~gAkggrGyFia~~~e~~~~~~~----------~~e~~   61 (213)
T d2pbza2           2 LQDKALEGAGIPRVEV----VE-PEDA-----KPDELYFVRIEGPRGGSGHFIVEGSELEERLST----------LEEPY   61 (213)
T ss_dssp             HHHHHHHHHTCCBCCB----CC-SCCC-----CSSCCEEEECCC------------EECSCCCC--------------CC
T ss_pred             hhHHHHHhCCCCCCcc----cC-cccc-----CCCceEEEEeccccCcceEEEEcCHHHHHhhhh----------cccce
Confidence            4688999999999983    22 3332     136799999998889999999988654322211          13568


Q ss_pred             EEEecccCcceEEEEeee
Q psy10619        169 LVEKFIKNPRHIEIQGTT  186 (246)
Q Consensus       169 lve~~i~~g~e~~v~v~~  186 (246)
                      .||||+- |..+.+..+-
T Consensus        62 ~IeEyv~-G~~~~~~yFy   78 (213)
T d2pbza2          62 RVERFIP-GVYLYVHFFY   78 (213)
T ss_dssp             EEEECCC-SCEEEEEEEE
T ss_pred             EEEEEec-cceeeeeeec
Confidence            9999999 7666666543

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.79  E-value=0.00061  Score=42.50  Aligned_cols=26  Identities=35%  Similarity=0.289  Sum_probs=24.7

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      +.|.+.++.++.||.|++||.|++||
T Consensus        11 ~~g~i~~~~v~~Gd~V~~gd~l~~iE   36 (79)
T d1iyua_          11 GDGEVIELLVKTGDLIEVEQGLVVLE   36 (79)
T ss_dssp             SEEEEEEECCCTTCBCCSSSEEEEEE
T ss_pred             CCEEEEEEEecCCCEEecCceEEEEE
Confidence            57899999999999999999999997

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00083  Score=41.97  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.||..|.+.++.++.||.|+.||.|+.||-
T Consensus        44 ~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_          44 MEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             EEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             ceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            458999999999999999999999999999984

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.42  E-value=0.0014  Score=40.73  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=30.7

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.||..|.+.++.++.||.|..||.|++||-
T Consensus        45 ~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          45 MEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             EEEEeceeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            458999999999999999999999999999974

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.37  E-value=0.0014  Score=40.60  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=29.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      ..+.||..|.+.++.++.||.|+.||.|+.|
T Consensus        46 ~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          46 TEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             EEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             EEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            3599999999999999999999999999987

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=96.31  E-value=0.00089  Score=43.37  Aligned_cols=44  Identities=16%  Similarity=0.087  Sum_probs=37.3

Q ss_pred             HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcC
Q psy10619         43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGD   86 (246)
Q Consensus        43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~d   86 (246)
                      ..++|++++. +|..+|+..++..|+..|+|+.|+++.+.+++.|
T Consensus        52 ~~~~d~vF~~lHG~~GEdG~iQ~~le~l~IPytGs~~~asal~~D   96 (96)
T d1iowa1          52 SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD   96 (96)
T ss_dssp             TTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred             ccCceeEEEeccCcchhccHHHHHHHHcCCCccCCCHHHHHHhcC
Confidence            3456677665 5778899999999999999999999999998876

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.001  Score=41.48  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=24.2

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -|.+.++.++.||.|++||+|+++|-
T Consensus        15 eg~i~~w~v~~Gd~V~~gd~l~~vEt   40 (80)
T d1laba_          15 EGEIVKWFVKPGDEVNEDDVLCEVQN   40 (80)
T ss_dssp             SEEEEECCCSSCCEECSSCCCEEEEC
T ss_pred             eEEEEEEEeCCCCEEeeCcCEEEEEc
Confidence            48999999999999999999999983

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.05  E-value=0.00075  Score=42.15  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      ..+.||..|.+.++.++.||.|+.||.|+.||-
T Consensus        45 ~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~   77 (80)
T d1laba_          45 VEIPSPVKGKVLEILVPEGTVATVGQTLITLDA   77 (80)
T ss_dssp             EEECCSSCEECCCBSSCSSSEECSSSCSBCBBC
T ss_pred             EEEEcCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            569999999999999999999999999999873

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0026  Score=39.57  Aligned_cols=25  Identities=36%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             ceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        221 GLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       221 g~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      +.+.++.++.||.|++||+|++||-
T Consensus        15 ~~v~~~~v~~Gd~V~~g~~l~~iEt   39 (80)
T d1qjoa_          15 VEVTEVMVKVGDKVAAEQSLITVEG   39 (80)
T ss_dssp             EEEEECCCCTTCEECBTSEEEEEES
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEc
Confidence            4789999999999999999999983

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.92  E-value=0.0015  Score=40.85  Aligned_cols=32  Identities=44%  Similarity=0.583  Sum_probs=30.2

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.||..|.+.++.++.|+.|..||.|++||
T Consensus        45 ~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie   76 (81)
T d1gjxa_          45 MDVPAEVAGVVKEVKVKVGDKISEGGLIVVVE   76 (81)
T ss_dssp             EEECCCCSSBBCCCCCCSSCEECSSSCCCEEC
T ss_pred             EEEEeeeeEEEEEEEeCCCCEECCCCEEEEEe
Confidence            56899999999999999999999999999997

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0021  Score=40.72  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=23.7

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -|.+.+..++.||.|++||.||++|
T Consensus        18 eg~i~~w~v~~Gd~V~~g~~l~~vE   42 (87)
T d1k8ma_          18 EVTVKEWYVKEGDTVSQFDSICEVQ   42 (87)
T ss_dssp             CEEEEEECCCTTCEECSSSCCEEEE
T ss_pred             eEEEEEEEcCCCCEEecCCEEEEEE
Confidence            4889999999999999999999998

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0015  Score=40.64  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.||..|.+.++.++.||.|+.||.|++||-
T Consensus        46 ~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          46 LEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            469999999999999999999999999999973

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0035  Score=39.64  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619        213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK  245 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~  245 (246)
                      -.+.||..|.+.++.++.|+.|+.|++|+.||-
T Consensus        48 ~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~   80 (87)
T d1k8ma_          48 VTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (87)
T ss_dssp             EECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             EEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            458999999999999999999999999999973

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.73  E-value=0.0024  Score=39.86  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=23.9

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..+.+.+..++.||.|++||+|+.||
T Consensus        14 ~~~~v~~w~v~~Gd~V~~gd~l~~iE   39 (81)
T d1gjxa_          14 ENVDIIAVEVNVGDTIAVDDTLITLE   39 (81)
T ss_dssp             SSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred             cEEEEEEEEeCCCCEECCCCEEEEEE
Confidence            34679999999999999999999998

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.64  E-value=0.003  Score=39.15  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=24.3

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..|.+.+..++.||.|++||+|+.+|
T Consensus        14 ~eg~i~~w~v~~Gd~V~~gd~l~~vE   39 (79)
T d1ghja_          14 ADGTVATWHKKPGEAVKRDELIVDIE   39 (79)
T ss_dssp             SCEEECCCSSCTTSEECSSCEEEEEE
T ss_pred             cEEEEEEEEcCCCCEEeeCccEEEEE
Confidence            34899999999999999999999998

>d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-alanine:D-lactate ligase VanA, N-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=95.25  E-value=0.0068  Score=41.36  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=36.5

Q ss_pred             CCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhc
Q psy10619         45 RADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMG   85 (246)
Q Consensus        45 ~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~   85 (246)
                      .+|++++. ||..+|+..++.+|+..++|++|++..+.++++
T Consensus        89 ~~DvvF~~lHG~~GEDG~iQglle~~~iPy~Gsgv~aSai~M  130 (130)
T d1e4ea1          89 HVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICM  130 (130)
T ss_dssp             ECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHH
T ss_pred             ccCEEEEeccCCCccchHHHHHHHHcCCCccCCCHHHHHhhC
Confidence            58999988 688899999999999999999999998887763

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0068  Score=39.45  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=23.6

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      -|.+.+..++.||.|++||.||.||
T Consensus        19 eg~i~~w~v~~Gd~V~~gd~l~~vE   43 (102)
T d1y8ob1          19 MGTVQRWEKKVGEKLSEGDLLAEIE   43 (102)
T ss_dssp             EEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             EEEEEEEEeCCCCEEecCccEEEEE
Confidence            3889999999999999999999998

>d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-alanine:D-lactate ligase VanA, N-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=95.07  E-value=0.011  Score=40.46  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=36.0

Q ss_pred             hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHh
Q psy10619         44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGM   84 (246)
Q Consensus        44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~   84 (246)
                      ..+|+++|. ||..+|++.++.+|+..|+|++|++..+.+++
T Consensus        90 ~~~Dvvf~~lHG~~GEDG~iQglle~~~iPy~G~~~~aSAla  131 (132)
T d1ehia1          90 GDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVS  131 (132)
T ss_dssp             CCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHH
T ss_pred             cCCCEEEEccCCCCccchHHHHHHHHcCCCccCCCHHHHHhc
Confidence            368999987 68889999999999999999999998887654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0033  Score=39.06  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=24.0

Q ss_pred             ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619        219 MPGLVKSVNCKVGDQIMEGQELCVVG  244 (246)
Q Consensus       219 ~pg~i~~l~~~~G~~v~~g~~~~v~e  244 (246)
                      ..|.+.+..++.||.|++||+|+.+|
T Consensus        15 ~eg~i~~w~v~~Gd~V~~gd~l~~vE   40 (80)
T d1pmra_          15 ADATVATWHKKPGDAVVRDEVLVEIE   40 (80)
T ss_dssp             SCEECCBCCCCTTCCBSSSCCBCBCC
T ss_pred             cEEEEEEEEeCCCCEEcCCCEEEEEE
Confidence            34899999999999999999999998

>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: Lysine biosynthesis enzyme LysX, N-terminal domain
domain: Lysine biosynthesis enzyme LysX, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.46  E-value=0.038  Score=34.67  Aligned_cols=40  Identities=18%  Similarity=0.151  Sum_probs=27.7

Q ss_pred             CCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcC
Q psy10619         46 ADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGD   86 (246)
Q Consensus        46 ~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~d   86 (246)
                      +|+|++-....+....+...|+.+|++++ +++.+++.|.|
T Consensus        49 ~D~Vi~R~~s~~~~~~v~~~lE~~Gv~v~-Ns~~aI~~c~D   88 (88)
T d1uc8a1          49 VTVALERCVSQSRGLAAARYLTALGIPVV-NRPEVIEACGD   88 (88)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHTTCCEE-SCHHHHHHHHB
T ss_pred             CCEEEEeccccchHHHHHHHHHHCCCcEe-ccHHHHHhhCC
Confidence            56666553211111256788999999998 99999998876

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.072  Score=34.32  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=29.1

Q ss_pred             cceeccccceeeeeeecCCC-eeeCCCeEEEEc
Q psy10619        213 KILHAPMPGLVKSVNCKVGD-QIMEGQELCVVG  244 (246)
Q Consensus       213 ~~l~sp~pg~i~~l~~~~G~-~v~~g~~~~v~e  244 (246)
                      ..+.||..|.+.++.++.|| .|.-|+.|++|.
T Consensus        49 ~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1          49 IGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             EEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             EEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            46999999999999999998 599999999994

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.21  E-value=0.076  Score=34.28  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEE
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      +++...+..+.||.|++||+|+.|
T Consensus        44 ~~vGi~l~~k~Gd~V~~Gd~l~~i   67 (103)
T d1brwa3          44 LAVGIVLHKKIGDRVQKGEALATI   67 (103)
T ss_dssp             TTCEEEESCCTTCEECTTCEEEEE
T ss_pred             cccceEEeccCCCEEcCCCeEEEE
Confidence            466778999999999999999986

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.16  Score=32.83  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEE
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      +++...+..+.||.|++||+|+.|
T Consensus        42 ~~vGi~l~~k~Gd~V~~G~~l~~i   65 (105)
T d1uoua3          42 LGVGAELLVDVGQRLRRGTPWLRV   65 (105)
T ss_dssp             SSCEEEECSCTTCEECTTCEEEEE
T ss_pred             ccccEEEeecCCCEEcCCCeEEEE
Confidence            567788999999999999999987

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.1  Score=33.73  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             cceeeeeeecCCCeeeCCCeEEEE
Q psy10619        220 PGLVKSVNCKVGDQIMEGQELCVV  243 (246)
Q Consensus       220 pg~i~~l~~~~G~~v~~g~~~~v~  243 (246)
                      +++...+..++||.|++||+|+.|
T Consensus        44 ~~vGi~l~~k~Gd~V~~Gd~l~~i   67 (105)
T d2tpta3          44 YSVGFTDMARLGDQVDGQRPLAVI   67 (105)
T ss_dssp             SSCEEESCCCTTCEEBTTBCSEEE
T ss_pred             CcccEEEEecCCCEEcCCCeEEEE
Confidence            456778999999999999999986

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.11  E-value=2.1  Score=31.36  Aligned_cols=61  Identities=15%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             HHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCC---HHHHHHhcCHHHHHHHHHHhCCCC
Q psy10619         41 IRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPT---AECIRGMGDKLESKKLAKEAGVNI  101 (246)
Q Consensus        41 ~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~---~~~~~~~~dK~~~~~~l~~~gip~  101 (246)
                      +.+.++-+|=....++..++.+.+.+++.|+|++|.+   +......-|=.++.+++.+.|+--
T Consensus       148 al~Ag~aFVN~iP~fIAsdp~w~~kF~e~glpivGDDikspn~AgvviDaiR~aKla~dRGi~G  211 (243)
T d1gr0a1         148 AIDAGVAFVNALPVFIASDPVWAKKFTDARVPIVGDDIKSPNSAGVIIDAVRAAKIAKDRGIGG  211 (243)
T ss_dssp             HHHHTCEEEECSSCCSTTSHHHHHHHHHHTCEEEESSBCCHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHcCceEEecccccccCCHHHHHHHHHcCCcEEcccccccccchhHHHHHHHHHHHHHcCCCC
Confidence            3333333333333345666677888888888888876   455555667667777777777654

>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=82.42  E-value=0.19  Score=29.26  Aligned_cols=19  Identities=21%  Similarity=0.218  Sum_probs=16.3

Q ss_pred             eeeeeecCCCeeeCCCeEE
Q psy10619        223 VKSVNCKVGDQIMEGQELC  241 (246)
Q Consensus       223 i~~l~~~~G~~v~~g~~~~  241 (246)
                      -..|.|+.||.|++||+|.
T Consensus        43 g~~l~V~eGd~V~~G~~LT   61 (64)
T d1e2wa2          43 GPDLIVKEGQTVQADQPLT   61 (64)
T ss_dssp             SSCBCCCTTCEECTTCBCB
T ss_pred             CCeEEECCCCEEeCCCccc
Confidence            3567899999999999985

>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Phormidium laminosum [TaxId: 32059]

Probab=81.36  E-value=0.19  Score=28.95  Aligned_cols=19  Identities=16%  Similarity=0.296  Sum_probs=16.1

Q ss_pred             eeeeeecCCCeeeCCCeEE
Q psy10619        223 VKSVNCKVGDQIMEGQELC  241 (246)
Q Consensus       223 i~~l~~~~G~~v~~g~~~~  241 (246)
                      -..|.|+.||.|++||.|+
T Consensus        41 g~~l~V~eGd~V~aG~~LT   59 (62)
T d1ci3m2          41 GPELIVSEGEEVAAGAALT   59 (62)
T ss_dssp             SSCBCCCTTCEECTTCBSB
T ss_pred             CCEEEECCCCEEeCCCccc
Confidence            3467799999999999875