Psyllid ID: psy10620

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59

MVKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRESVESWGKRRRRSVANDTESSDDMTLSQEILVLDFGDDKQSQFLKSNEALFNEFTKDKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRKVMG

ccccccccccccccccEEEEEcccEEEccccEEEEcccHHHHHHHHHcccccEEEEEEEEcccccEEEccccccccccccccccccccEEEEccccccccccccEEEcccccccEEEccccccccccEEEccccccccHHHHHHHHHcccccEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEcccccccEEEEccccccccEEccccccEEEEEEEcccccccEEEccEEEEEEEEEEcccccccccEEEEEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEEEEccEEEEEEEEcccccEEEEEEEEEEEccccccEEEEEccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccHHcccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc

cccEEccccccccccEEEEEccccccccccEEEEccccHHHHHHHHHcccccEEEEEEEEccccEEEEccccccccccccccccccccHHHHHHcccccccccccEEEccccccccccccHHHHHcccccEEEEccccHHHHHHHHHHccccEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEccccEEEEEEEccccccccEccccEEEEEEEEEEccEEEEEcccEEEEEEEEcccccEEEcccccccccccEEcccccccccEEEEEEccccccEEEEEEccEEEEEEEEccccccEEEEEEEEEEccccccEEEEEcccccccccHHccccccccccHHEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcc

mvklqirsenvclrpwafervpnkmirGLDNALIYTSTKEACLAACLNEhrftcrsvEYNYVTLQChlsdsdrrttgQYVQFVDAQgvdyfenlclkpnqgckgnrlfqvprigvaddkVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCrsflykgppigaqyncqlfhldhktlpdgpstylnaerpliddgqrigsyyenyceksvgtsheqlpvvfdttddptlnnltrndincdktgtcydvtvhckdtRIAVQVrtnkpfngriyalgrsetcnidvlnsdlfrldltmsgqdcntqsvtgVFSNTVVLQHHSVVMTKADKIYKVKCTYdmssknitfgmmpirdpemisitsapeapppririldtksrevetvrigdkltfrieipeetpygifARSCVAMakdskstfqiiddegcpvdpnifpsftpdgnALQSVYEAFRftesygvifqcnvkyclgpcepavcewgRESVESWGKRrrrsvandtessddmtlsQEILVLdfgddkqsQFLKSNEALFNeftkdktvtivepcptktsILALGVTCCLLILIYVSTIFCYYIKkwmtprkvmg

mvklqirsenvclrpwafervpnkmIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFdttddptlnnltrndincdktgtCYDVTVHCKdtriavqvrtnkpfngriyalgrsetcNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVvmtkadkiykvKCTYDMSSKNITFGMMPIRDPEMIsitsapeapppririldtksrevetvrigdkltfrieipeetpygIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGResveswgkrrrrsvandtessddmtlsQEILVLDFGDDKQSQFLKSNEALfneftkdktvtivEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRKVMG

MVKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFdttddptlnnltrndINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRESVESWGKRRRRSVANDTESSDDMTLSQEILVLDFGDDKQSQFLKSNEALFNEFTKDKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRKVMG

*******SENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR*******************IL****REVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRESV*************************EILVLDFGDDKQSQFLKSNEALFNEFTKDKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMT******

MVKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSET**********FRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSS***********DPEMISITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEP**********************************QEILVL***************************TIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMT******

MVKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRES*********************MTLSQEILVLDFGDDKQSQFLKSNEALFNEFTKDKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRKVMG

*VKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTS**QLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVC**************************DMTLSQEILVLDFG********************DKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMT******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		589	2.2.26 [Sep-21-2011]
Q03755		424	Cuticlin-1 OS=Caenorhabdi	no	N/A	0.356	0.495	0.244	1e-06

>sp\|Q03755\|CUT1_CAEEL Cuticlin-1 OS=Caenorhabditis elegans GN=cut-1 PE=2 SV=2	Back alignment and function desciption

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 19/229 (8%)

Query: 253 VHCKDTRIAVQVRTNKPFNGRIYALGRSET--CNIDVLNSDLFRLDLTMSGQDCNTQSV- 309
           V C    I V   T  PF G +Y  G  +   C  D     +  ++L      CNT    
Sbjct: 31  VECGPNSITVNFNTRNPFEGHVYVKGLYDQAGCRSDEGGRQVAGIELPFD--SCNTARTR 88

Query: 310 ----TGVF-SNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSA 364
                GVF S TVV+  H   +TK D+ Y+++C Y  S K ++   + + D      T  
Sbjct: 89  SLNPKGVFVSTTVVISFHPQFVTKVDRAYRIQCFYMESDKTVS-TQIEVSDLTTAFQTQV 147

Query: 365 PEAPPPRIRILDT--KSREVETVRIGDKLTFRIEIPEET--PYGIFARSCVAMAKDSKST 420
              P  +  ILD     + ++   IG ++  +     ET   +     SC  +   +  T
Sbjct: 148 VPMPVCKYEILDGGPSGQPIQFATIGQQVYHKWTCDSETTDTFCAVVHSC-TVDDGNGDT 206

Query: 421 FQIIDDEGCPVDPNIFPS--FTPDGNALQSVYEAFRFTESYGVIFQCNV 467
            QI+++EGC +D  +  +  +  D  A Q  +  +++ +   + +QC +
Sbjct: 207 VQILNEEGCALDKFLLNNLEYPTDLMAGQEAH-VYKYADRSQLFYQCQI 254

Component of the cuticles. It forms a ribbon approximately 2 microns wide running along the lateral lines underneath the alae. Contributes to the formation of extracellular envelopes protecting the organism from the environment.
Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		589
193702241		707	PREDICTED: hypothetical protein LOC10016	0.996	0.830	0.882	0.0
383848428		700	PREDICTED: uncharacterized protein LOC10	0.994	0.837	0.883	0.0
307200159		700	Cuticlin-1 [Harpegnathos saltator]	0.994	0.837	0.876	0.0
307180038		700	Cuticlin-1 [Camponotus floridanus]	0.994	0.837	0.876	0.0
332016601		705	Cuticlin-1 [Acromyrmex echinatior]	0.994	0.831	0.872	0.0
380029985		697	PREDICTED: uncharacterized protein LOC10	0.993	0.839	0.877	0.0
66546405		697	PREDICTED: hypothetical protein LOC41097	0.993	0.839	0.876	0.0
340711548		699	PREDICTED: hypothetical protein LOC10064	0.993	0.836	0.876	0.0
270001354		697	hypothetical protein TcasGA2_TC000163 [T	0.991	0.837	0.875	0.0
350415983		699	PREDICTED: hypothetical protein LOC10075	0.993	0.836	0.877	0.0

>gi\|193702241\|ref\|XP_001949348.1\| PREDICTED: hypothetical protein LOC100165402 [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/597 (88%), Positives = 569/597 (95%), Gaps = 10/597 (1%)

Query: 1   MVKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYN 60
           MVK+QIRS+NVCLRPW+FERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYN
Sbjct: 113 MVKMQIRSDNVCLRPWSFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYN 172

Query: 61  YVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKV 120
           YVTLQCHLSDSDRRTTGQYVQFV+AQGVDYFENLC+K NQ CKGNR+FQVPRIGVADDKV
Sbjct: 173 YVTLQCHLSDSDRRTTGQYVQFVEAQGVDYFENLCIKGNQACKGNRVFQVPRIGVADDKV 232

Query: 121 AQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTL 180
           AQYASLHYY DKELQVT+E+ACRLACEIENEFLCRSF++KGPP+G  YNC+LFHLDHKTL
Sbjct: 233 AQYASLHYYNDKELQVTSESACRLACEIENEFLCRSFIFKGPPVGTAYNCELFHLDHKTL 292

Query: 181 PDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDI 240
           PDGPSTYLNAERPLIDDGQ+IG+YYENYCEKS    HEQLPVVF++TDDP+LN LTR D+
Sbjct: 293 PDGPSTYLNAERPLIDDGQKIGNYYENYCEKSTTPPHEQLPVVFESTDDPSLN-LTRTDL 351

Query: 241 NCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMS 300
           NCDKTGTCYDV+VHCKDT+IAVQVRTNKPFNGRIYALGRSETCNIDVLNSD FRLDLTM+
Sbjct: 352 NCDKTGTCYDVSVHCKDTKIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDQFRLDLTMA 411

Query: 301 GQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMIS 360
           GQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMIS
Sbjct: 412 GQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMIS 471

Query: 361 ITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKST 420
           ITSAPEAPPPRIRILD+++REVETVRIGDKLTFRIEIPE+TPYGIFARSCVAMAKDSKST
Sbjct: 472 ITSAPEAPPPRIRILDSRAREVETVRIGDKLTFRIEIPEDTPYGIFARSCVAMAKDSKST 531

Query: 421 FQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCE 480
           FQIIDDEGCPVDP IFP F+P+GNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCE
Sbjct: 532 FQIIDDEGCPVDPTIFPGFSPEGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCE 591

Query: 481 WGRESVESWGKRRRRSVA------NDT-ESSDDMT-LSQEILVLDFGDDKQSQFLKSNEA 532
           WGR+SVESWG RRRRSV+      NDT E+S+DMT +SQEILVLDFGD+KQSQFLKSNE 
Sbjct: 592 WGRDSVESWG-RRRRSVSGVQPSNNDTAENSEDMTQISQEILVLDFGDEKQSQFLKSNEP 650

Query: 533 LFNEFTKDKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRKVMG 589
            + +F+KDKT+TIVEPCPTKTS+LALG+TC LLILIYVST+FCYY+KKWMTPRK+M 
Sbjct: 651 QYTDFSKDKTITIVEPCPTKTSVLALGITCMLLILIYVSTVFCYYMKKWMTPRKMMA 707

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383848428\|ref\|XP_003699852.1\| PREDICTED: uncharacterized protein LOC100876152 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307200159\|gb\|EFN80467.1\| Cuticlin-1 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307180038\|gb\|EFN68114.1\| Cuticlin-1 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|332016601\|gb\|EGI57482.1\| Cuticlin-1 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|380029985\|ref\|XP_003698643.1\| PREDICTED: uncharacterized protein LOC100866634 [Apis florea]	Back alignment and taxonomy information

>gi\|66546405\|ref\|XP_394451.2\| PREDICTED: hypothetical protein LOC410975 [Apis mellifera]	Back alignment and taxonomy information

>gi\|340711548\|ref\|XP_003394337.1\| PREDICTED: hypothetical protein LOC100648011 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|270001354\|gb\|EEZ97801.1\| hypothetical protein TcasGA2_TC000163 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|350415983\|ref\|XP_003490810.1\| PREDICTED: hypothetical protein LOC100750199 [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		589
FB\|FBgn0029128		715	tyn "trynity" [Drosophila mela	0.993	0.818	0.75	2.6e-253
FB\|FBgn0039704		744	neo "neyo" [Drosophila melanog	0.429	0.340	0.332	1.2e-44
FB\|FBgn0039851		774	mey "morpheyus" [Drosophila me	0.429	0.326	0.327	2.4e-41
FB\|FBgn0039852		805	nyo "nyobe" [Drosophila melano	0.434	0.318	0.313	6.4e-39
FB\|FBgn0016047		1557	nompA "no mechanoreceptor pote	0.443	0.167	0.333	5e-34
FB\|FBgn0053196		22	dp "dumpy" [Drosophila melanog	0.553	14.81	0.287	5.2e-29
WB\|WBGene00009926		741	noah-2 [Caenorhabditis elegans	0.522	0.415	0.272	6.9e-29
FB\|FBgn0020521		462	pio "piopio" [Drosophila melan	0.390	0.497	0.226	9.3e-18
WB\|WBGene00009541		912	cutl-17 [Caenorhabditis elegan	0.538	0.347	0.223	1.1e-16
WB\|WBGene00011443		384	cutl-11 [Caenorhabditis elegan	0.458	0.703	0.254	1.9e-15

FB\|FBgn0029128 tyn "trynity" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 2439 (863.6 bits), Expect = 2.6e-253, P = 2.6e-253
 Identities = 450/600 (75%), Positives = 513/600 (85%)

Query:     1 MVKLQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYN 60
             M+KLQ+RSENVC RPW+FERVPNK+IRGLDNALIYTSTKEACL+ACLNE RF CRSVEY+
Sbjct:   118 MIKLQLRSENVCHRPWSFERVPNKVIRGLDNALIYTSTKEACLSACLNERRFVCRSVEYD 177

Query:    61 YVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLF-QVPRIGVADDK 119
             Y  ++C LSDSDRR++GQ+VQ VDAQG DYFENLCLKP Q CK NR F    ++GV+++K
Sbjct:   178 YNNMKCVLSDSDRRSSGQFVQLVDAQGTDYFENLCLKPAQACKNNRSFGNSQKMGVSEEK 237

Query:   120 VAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKT 179
             VAQY  LHYY DKELQVT+E+ACRLACEIE+EFLCRSFLY G P G+QYNC+L+HLDHKT
Sbjct:   238 VAQYVGLHYYTDKELQVTSESACRLACEIESEFLCRSFLYLGQPQGSQYNCRLYHLDHKT 297

Query:   180 LPDGPSTYLNAERPLIDDGQRIGSYYENYCEKSVGTSH----------EQLPVVFXXXXX 229
             LPDGPSTYLN ERPLID G+ IG Y+EN CEK+ G             + LPV       
Sbjct:   298 LPDGPSTYLNHERPLIDHGEPIGQYFENQCEKAAGLGAGSPPGTLDKIDTLPVSLDTIED 357

Query:   230 XXXXXXXXXXINCDKTGTCYDVTVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVLN 289
                       +NCDKTGTCYDV+VHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDV+N
Sbjct:   358 PNLTNLTRNDVNCDKTGTCYDVSVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVIN 417

Query:   290 SDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFG 349
             SD FRLDLTM+GQDCNTQSVTGV+SNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFG
Sbjct:   418 SDAFRLDLTMAGQDCNTQSVTGVYSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFG 477

Query:   350 MMPIRDPEMISITSAPEAPPPRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARS 409
             MMPIRDPEMI I S+PEAPPPRIRILDT+ REVETVRIGD+L FRIEIPE+TPYGIFARS
Sbjct:   478 MMPIRDPEMIHINSSPEAPPPRIRILDTRQREVETVRIGDRLNFRIEIPEDTPYGIFARS 537

Query:   410 CVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKY 469
             CVAMAKD++++F+IIDD+GCP DP IFP FT DGNALQS YEAFRFTESYGVIFQCNVKY
Sbjct:   538 CVAMAKDARTSFKIIDDDGCPTDPTIFPGFTADGNALQSTYEAFRFTESYGVIFQCNVKY 597

Query:   470 CLGPCEPAVCEWGRESVESWGKRRRRSV-ANDTESSDDMTLSQEILVLDFGDDKQSQFLK 528
             CLGPCEPAVCEW  +S ES G+RRRRS+ +NDT+S DDM +SQEILVLDFGD+K+ +F K
Sbjct:   598 CLGPCEPAVCEWNMDSFESLGRRRRRSIESNDTKSEDDMNISQEILVLDFGDEKR-EFFK 656

Query:   529 SNEALFNEFTKDKTVTIVEPCPTKTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRKVM 588
             ++ +   +F KDKTVTI+EPCPTKTS+LAL VTC L+IL+Y+ST+FCYY+KKWM P K++
Sbjct:   657 ADPS--TDFAKDKTVTIIEPCPTKTSVLALAVTCALMILLYISTLFCYYMKKWMQPHKIV 714

GO:0003674 "molecular_function" evidence=ND

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0003383 "apical constriction" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

FB\|FBgn0039704 neo "neyo" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0039851 mey "morpheyus" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0039852 nyo "nyobe" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0016047 nompA "no mechanoreceptor potential A" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0053196 dp "dumpy" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00009926 noah-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

FB\|FBgn0020521 pio "piopio" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00009541 cutl-17 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

WB\|WBGene00011443 cutl-11 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		589
pfam00100		252	pfam00100, Zona_pellucida, Zona pellucida-like dom	1e-27
cd01099		80	cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like d	6e-19
smart00241		252	smart00241, ZP, Zona pellucida (ZP) domain	7e-19
pfam00024		78	pfam00024, PAN_1, PAN domain	4e-15
smart00473		78	smart00473, PAN_AP, divergent subfamily of APPLE d	2e-10
pfam00024		78	pfam00024, PAN_1, PAN domain	0.004

>gnl\|CDD\|215716 pfam00100, Zona_pellucida, Zona pellucida-like domain	Back alignment and domain information

 Score =  111 bits (278), Expect = 1e-27
 Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 27/246 (10%)

Query: 254 HCKDTRIAVQVRTNKPFNGRIYALG---RSETCNIDVLNSDLFRLDLTMSGQDCNTQSVT 310
            C +  + V V  +  F   +Y         +C     NS        +S   C T    
Sbjct: 1   QCTEDTMTVVVSKDLTFTPGLYLSSLHLGDPSCRPVETNSTHAIFRFPLS--SCGTTRQR 58

Query: 311 ----GVFSNTVVLQ----HHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISIT 362
                V+ N +V Q        +   +D+   V C+Y   S +++   +    P +    
Sbjct: 59  TGDGIVYENEIVSQPSVSVGPPITRDSDRRLPVSCSYTSRSVSVSSVAVLPTVPPVSPSP 118

Query: 363 SAPEAPPPRIRILDTK---SREVETVRIGDKLTFRIEIPEET---PYGIFARSCVAMA-- 414
           S   +    +R+       S    T+ +GD L     +       P  +F  SC A    
Sbjct: 119 SGEGSLTFSLRLYTDDSYTSDYPVTIELGDPLYVEATVSVLPRSDPLVLFLDSCWATPGP 178

Query: 415 -KDSKSTFQIIDDEGCPVDPN---IFPSFTPDGNALQSVYEAFRFTESYG-VIFQCNVKY 469
             DS   + +I++ GCPVD +          + +  +  ++AFRF      V   C+VK 
Sbjct: 179 DPDSSPRYDLIEN-GCPVDGDSTSTLSHPVGESHTARFSFKAFRFPGDSSQVYIHCSVKV 237

Query: 470 CLGPCE 475
           C     
Sbjct: 238 CDKSDP 243

Length = 252

>gnl\|CDD\|238532 cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins	Back alignment and domain information

>gnl\|CDD\|214579 smart00241, ZP, Zona pellucida (ZP) domain	Back alignment and domain information

>gnl\|CDD\|215662 pfam00024, PAN_1, PAN domain	Back alignment and domain information

>gnl\|CDD\|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains	Back alignment and domain information

>gnl\|CDD\|215662 pfam00024, PAN_1, PAN domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		589
smart00241		253	ZP Zona pellucida (ZP) domain. ZP proteins are res	100.0
PF00100		265	Zona_pellucida: Zona pellucida-like domain; InterP	99.95
cd01099		80	PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr	99.55
PF00024		79	PAN_1: PAN domain This Prosite entry concerns appl	99.26
cd01099		80	PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr	98.9
smart00473		78	PAN_AP divergent subfamily of APPLE domains. Apple	98.52
PF00024		79	PAN_1: PAN domain This Prosite entry concerns appl	98.38
smart00473		78	PAN_AP divergent subfamily of APPLE domains. Apple	97.06
cd01100		73	APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d	95.4
PF08276		66	PAN_2: PAN-like domain; InterPro: IPR013227 PAN do	92.79
PF14295		51	PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.	92.62
smart00223		79	APPLE APPLE domain. Four-fold repeat in plasma kal	92.12
cd01098		84	PAN_AP_plant Plant PAN/APPLE-like domain; present	91.48
cd00129		80	PAN_APPLE PAN/APPLE-like domain; present in N-term	85.41
cd00129		80	PAN_APPLE PAN/APPLE-like domain; present in N-term	81.57

>smart00241 ZP Zona pellucida (ZP) domain	Back alignment and domain information

Probab=100.00  E-value=5.1e-32  Score=274.12  Aligned_cols=224  Identities=22%  Similarity=0.488  Sum_probs=173.1

Q ss_pred             EecCCeEEEEEEeCCCCcceEeecCC---CCCCceeecCCceEEEEEEecCCCCCccee---cc-EEEEEEEEe-ecCee
Q psy10620        254 HCKDTRIAVQVRTNKPFNGRIYALGR---SETCNIDVLNSDLFRLDLTMSGQDCNTQSV---TG-VFSNTVVLQ-HHSVV  325 (589)
Q Consensus       254 ~C~~~~m~V~v~t~~~F~G~iy~kg~---~~~C~~~~~~~~~~~l~l~~~~~~Cg~~~~---~g-~ysn~Vvvq-~h~~i  325 (589)
                      +|.++.|.|.|++..+|.|+||+++.   .+.|++.....+...+.|.+++.+||++..   ++ +|+|+|+++ +|+.+
T Consensus         1 ~C~~~~m~v~v~~~~~~~g~i~~~~l~l~d~~C~~~~~~~~~~~~~f~~~l~~CGt~~~~~~~~~~ysn~v~~~~~~~~~   80 (253)
T smart00241        1 QCGEDQMVVSVSTDLLFPGGIYVKGLYLGDPSCRPVFTDSTSAFVSFEVPLNGCGTRRQVNPDGIVYSNTLVVSPFHPGF   80 (253)
T ss_pred             CCCCCEEEEEEEecCCCCCeEEEeeEEeCCCCCCCccccCCCcEEEEEeccccCCCeEEECCCeEEEEEEEEEccCCCCc
Confidence            59999999999999999999999985   369999632222335677778889999753   33 799999999 79999


Q ss_pred             eeecCe-EEEEEeEecCCCceeeecceecCCCceeEEe-cCCCCCCcEEEEecC--CCCeeeee---ecCCEEEEEEEEc
Q psy10620        326 MTKADK-IYKVKCTYDMSSKNITFGMMPIRDPEMISIT-SAPEAPPPRIRILDT--KSREVETV---RIGDKLTFRIEIP  398 (589)
Q Consensus       326 ~T~~D~-~~~v~C~y~~~~~~Vs~~~~p~~~~~~~~i~-~~~~~p~~~m~i~~~--~g~~v~~v---~vGd~l~l~~~~~  398 (589)
                      +|..|+ .|+++|.|....+ ++..+ .+.......+. ...+.+.++|+|+..  .|+++..+   ++||+|+|+|+++
T Consensus        81 itr~~~~~~~~~C~y~~~~~-~~~~~-~~~~~~~~~~~~~~~g~~~~~m~l~~~~~~~~~~~~~~~~~lg~~l~~~~~~~  158 (253)
T smart00241       81 ITRDDRAAYHFQCFYPENEK-VSLNL-DVSTIPPTELSSVSEGPPTCSYRLYKDDSFGSPYQSADYPVLGDPVYHEWSCD  158 (253)
T ss_pred             eEecCceEEEEEEEEeCCCc-eEEEE-EecCCCCCCcccccCCCcEEEEEeccCCCCCCcccCCCCcccCCeEEEEEEEc
Confidence            999998 9999999997544 43221 11110001111 123457899999853  56776433   7999999999998


Q ss_pred             C--CCcccEEEeEEEEEcCCC---CceEEEEeCCCCCCCCCCCCccccc---CceeEEEEEEEEEcccceEEEEEEEEEe
Q psy10620        399 E--ETPYGIFARSCVAMAKDS---KSTFQIIDDEGCPVDPNIFPSFTPD---GNALQSVYEAFRFTESYGVIFQCNVKYC  470 (589)
Q Consensus       399 ~--~~~~~i~V~~C~A~d~~~---~~~~~LID~~GCp~D~~i~~~~~~~---~~~l~~~f~AFKFp~s~~V~f~C~V~vC  470 (589)
                      +  ++.|+|+|++|||+++.+   ..++.||| +|||+|+.+++...+.   +..+++.|+||||++++.|||||+|++|
T Consensus       159 ~~~~~~~~l~v~~C~at~~~~~~~~~~~~lI~-~GC~~d~~~~~~~~~~~~~~~~~~f~~~aF~F~~~~~v~~hC~v~vC  237 (253)
T smart00241      159 GADDPPLGLLVDNCYATPGSDPSSGPKYFIID-NGCPVDGYLDSTIPYNSSPNHYARFSVKVFKFADRSLVYFHCQIRLC  237 (253)
T ss_pred             cCCCCCeEEEEeeEEEcCCCCCCCCCcEEEEE-CccCCCCccccceecCCCCcceEEEEEEEEEecCCCcEEEEEEEEEE
Confidence            5  679999999999998763   57999998 9999999887665443   3567899999999999999999999999


Q ss_pred             cC----CCCCCCCC
Q psy10620        471 LG----PCEPAVCE  480 (589)
Q Consensus       471 ~~----~C~p~~C~  480 (589)
                      .+    .|..+.|.
T Consensus       238 ~~~~~~~C~~~~C~  251 (253)
T smart00241      238 DKSDGSSCDGPACS  251 (253)
T ss_pred             CCCCCCCCCCCcCC
Confidence            85    57666775

ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan).

>PF00100 Zona_pellucida: Zona pellucida-like domain; InterPro: IPR001507 A large domain, containing around 260 amino acids, has been recognised in a variety of receptor-like eukaryotic glycoproteins []	Back alignment and domain information

>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins	Back alignment and domain information

>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []	Back alignment and domain information

>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins	Back alignment and domain information

>smart00473 PAN_AP divergent subfamily of APPLE domains	Back alignment and domain information

>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []	Back alignment and domain information

>smart00473 PAN_AP divergent subfamily of APPLE domains	Back alignment and domain information

>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins	Back alignment and domain information

>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []	Back alignment and domain information

>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A	Back alignment and domain information

>smart00223 APPLE APPLE domain	Back alignment and domain information

>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins	Back alignment and domain information

>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins	Back alignment and domain information

>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		589
3nk4_A		297	ZONA pellucida 3; fertilization, oocyte, egg coat,	6e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A* Length = 297	Back alignment and structure

 Score = 89.7 bits (221), Expect = 6e-20
 Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 33/282 (11%)

Query: 251 VTVHCKDTRIAVQVR-----TNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCN 305
           V V C++ ++ V V      T +  N     LG    C    LN+    +       +C 
Sbjct: 4   VAVQCQEAQLVVTVHRDLFGTGRLINAADLTLG-PAACKHSSLNAAHNTVTFAAGLHECG 62

Query: 306 TQS-VTG---VFSNTVVLQ----HHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPE 357
           +   VT    ++   +        + V++     +  ++C Y    +  +  + P   P 
Sbjct: 63  SVVQVTPDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAIRPTWSPF 122

Query: 358 MISITSAPEAPPPRIRILDTKSRE--VETVRIGDKLTFRIEIPEET--PYGIFARSCVAM 413
             ++++          + D  S E      ++GD L  + E+  E   P  +F  SCVA 
Sbjct: 123 NSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAA 182

Query: 414 AK---DSKSTFQIIDDEGCPVDPNIFPSFT------PDGNALQSVYEAFRFTESYG--VI 462
                DS   + IID  GC VD  +  + +      P  + L+   + FRF       + 
Sbjct: 183 LSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRFRIDVFRFAGDNRNLIY 242

Query: 463 FQCNVKYCLGPCEPAVCEWGRESVESWGKRRRRSVANDTESS 504
             C++K       P           S+ K R   V  +    
Sbjct: 243 ITCHLKVTPADQGPDPQNKA----CSFNKARNTWVPVEGSRD 280

PyMOL of 3nk4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		589
3nk4_A		297	ZONA pellucida 3; fertilization, oocyte, egg coat,	99.91
3qw9_A		176	Transforming growth factor beta receptor type 3; c	99.47
3hms_A		101	Hepatocyte growth factor; HGF/SF, hormone/growth f	98.33
3hms_A		101	Hepatocyte growth factor; HGF/SF, hormone/growth f	97.33
3sp8_A		264	Hepatocyte growth factor alpha chain; kringle doma	97.32
2yil_A		138	Microneme antigen L2; sugar binding protein, apple	96.81
2f83_A		625	Coagulation factor XI; protease, apple domain, hyd	96.81
4a5v_A		161	MIC4, micronemal protein 4; adhesion; NMR {Toxopla	96.57
2f83_A		625	Coagulation factor XI; protease, apple domain, hyd	96.54
4dur_A		791	Plasminogen, serine protease; fibrinolysis, hydrol	96.18
2jwa_A		44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.84
2qj2_A		184	Hepatocyte growth factor; HGF/SF, hormone/growth f	94.79
3sp8_A		264	Hepatocyte growth factor alpha chain; kringle doma	94.45
2l2t_A		44	Receptor tyrosine-protein kinase ERBB-4; transmemb	94.01
2ks1_B		44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	93.87
2ll3_A		82	Micronemal protein 4; cell adhesion; NMR {Toxoplas	93.03
2ll3_A		82	Micronemal protein 4; cell adhesion; NMR {Toxoplas	91.15
4dur_A		791	Plasminogen, serine protease; fibrinolysis, hydrol	90.29
2qj2_A		184	Hepatocyte growth factor; HGF/SF, hormone/growth f	87.77
1iij_A		35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	87.68
4a5v_A		161	MIC4, micronemal protein 4; adhesion; NMR {Toxopla	87.16
2yil_A		138	Microneme antigen L2; sugar binding protein, apple	82.6

>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*	Back alignment and structure

Probab=99.91  E-value=4.2e-23  Score=212.36  Aligned_cols=230  Identities=21%  Similarity=0.399  Sum_probs=155.4

Q ss_pred             eeEEEecCCeEEEEEEeCCCCcc------eEeecCCCCCCceeecCCceEEEEEEecCCCCCccee--cc--EEEEEEEE
Q psy10620        250 DVTVHCKDTRIAVQVRTNKPFNG------RIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSV--TG--VFSNTVVL  319 (589)
Q Consensus       250 ~v~v~C~~~~m~V~v~t~~~F~G------~iy~kg~~~~C~~~~~~~~~~~l~l~~~~~~Cg~~~~--~g--~ysn~Vvv  319 (589)
                      .|+|+|+++.|.|.|...-.-.|      .++..  .+.|++...+.....+.|.+++.+||+...  .+  +|+|+|+.
T Consensus         3 ~V~V~C~~~~m~V~V~k~~l~~~~~i~~~~L~L~--d~~C~~~~~~~~~~~~~f~~~l~~CGT~~~~~~~~iiY~N~l~~   80 (297)
T 3nk4_A            3 PVAVQCQEAQLVVTVHRDLFGTGRLINAADLTLG--PAACKHSSLNAAHNTVTFAAGLHECGSVVQVTPDTLIYRTLINY   80 (297)
T ss_dssp             SEEEEECSSEEEEEEESCCSCSSCCCCGGGEEET--TTTBCCSEEETTTTEEEEEEETTCTTCEEEECSSEEEEEEEEEE
T ss_pred             cEEEEeCCCEEEEEEEHHHhCCCCccccceeEEC--CCCCCCeeeCCCCcEEEEEecCCCCCceeEecCCEEEEEEEEEE
Confidence            47999999999999986332222      23343  468998765411113566668999999753  22  79999998


Q ss_pred             eecC----eeeeecCeEEEEEeEecCCCceeeec-ceecCCCceeEEecCCCCCCcEEEEecCC-CCe--eeeeecCCEE
Q psy10620        320 QHHS----VVMTKADKIYKVKCTYDMSSKNITFG-MMPIRDPEMISITSAPEAPPPRIRILDTK-SRE--VETVRIGDKL  391 (589)
Q Consensus       320 q~h~----~i~T~~D~~~~v~C~y~~~~~~Vs~~-~~p~~~~~~~~i~~~~~~p~~~m~i~~~~-g~~--v~~v~vGd~l  391 (589)
                      ...+    .|++.....++|+|.|+.. .+|+.. +.|...+-...+ ...+...+.|+++..+ ..+  ...+.+||+|
T Consensus        81 ~~~~~~~~~ItR~~~~~l~~~C~Y~~~-~~vs~~~~~p~~~~~~~~~-~~~g~~~~~m~l~~d~~~~~~~~~~~~l~~~l  158 (297)
T 3nk4_A           81 DPSPASNPVIIRTNPAVIPIECHYPRR-EQVSSNAIRPTWSPFNSAL-SAEERLVFSLRLMSDDWSTERPFTGFQLGDIL  158 (297)
T ss_dssp             CCCCCSSTTEESSCCEEEEEEEEEEC-----------CCBCTTC-------CCCCEEEEEECTTSSSBCCSCCBCTTCEE
T ss_pred             eccCCCCCceEecccEEEEEEEEEcCC-CccccccCcCccccccccc-ccccceEEEEEeccCCCcccccCCcccCCCEE
Confidence            7543    3666678899999999964 456543 233322211111 1224457899998642 222  2356899999


Q ss_pred             EEEEEEcC--CCcccEEEeEEEEEcC---CCCceEEEEeCCCCCCCCCCC---Cccc-c--cCceeEEEEEEEEEcc--c
Q psy10620        392 TFRIEIPE--ETPYGIFARSCVAMAK---DSKSTFQIIDDEGCPVDPNIF---PSFT-P--DGNALQSVYEAFRFTE--S  458 (589)
Q Consensus       392 ~l~~~~~~--~~~~~i~V~~C~A~d~---~~~~~~~LID~~GCp~D~~i~---~~~~-~--~~~~l~~~f~AFKFp~--s  458 (589)
                      |+++++..  +..+.++|++|||++.   .+..+|.||+.+|||.|.++.   ..|. +  ....+++.|+||||++  .
T Consensus       159 yvev~v~~~~~~~l~l~l~~C~ATps~~~~~~~~y~lI~~~GC~~d~~~~~~~s~~~~~~~~~~~~rF~~~~F~F~~~~~  238 (297)
T 3nk4_A          159 NIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRFRIDVFRFAGDNR  238 (297)
T ss_dssp             EEEEEECCTTBCCEEEEEEEEEEESSSCTTSSSEEEEEBTTTEEGGGGSTTCCCEECSSCSSTTEEEEEEECCEETTCSS
T ss_pred             EEEEEEecCCCCCEEEEEeeEEEeCCCCccCCceEEEEccCCCCcCCccccceeEEecCCCCCceEEEEEEeEeccCCCC
Confidence            99999974  4689999999999964   345799999669999998875   2343 2  3467899999999998  6


Q ss_pred             ceEEEEEEEEEecCCCCCCCCCCCC
Q psy10620        459 YGVIFQCNVKYCLGPCEPAVCEWGR  483 (589)
Q Consensus       459 ~~V~f~C~V~vC~~~C~p~~C~~~~  483 (589)
                      +.|||||.|.+|...=.+..|..++
T Consensus       239 ~~vylhC~v~vC~~~~~~~~C~~~C  263 (297)
T 3nk4_A          239 NLIYITCHLKVTPADQGPDPQNKAC  263 (297)
T ss_dssp             CEEEEEEEEEEEETTCCCBTTBCCE
T ss_pred             CeEEEEEEEEEECCCCCCCcccCcC
Confidence            8999999999998643345566555

PyMOL of 3nk4

>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}	Back alignment and structure

>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A	Back alignment and structure

>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A	Back alignment and structure

>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*	Back alignment and structure

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*	Back alignment and structure

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A	Back alignment and structure

>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}	Back alignment and structure

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A	Back alignment and structure

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A	Back alignment and structure

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A	Back alignment and structure

>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A	Back alignment and structure

>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*	Back alignment and structure

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}	Back alignment and structure

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}	Back alignment and structure

>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*	Back alignment and structure

>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*	Back alignment and structure

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A	Back alignment and structure

>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A	Back alignment and structure

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1	Back alignment and structure

>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}	Back alignment and structure

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		589
d2qj2a1		91	g.10.1.1 (A:36-126) Hepatocyte growth factor {Huma	6e-11

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure


class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 6e-11
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 18 FERVPNKMIRGLDNALIY----TSTKEACLAACLN--EHRFTCRSVEYNYVTLQCHLSDS 71
          F++     +  +D AL       +T + C   C       FTC++  ++    QC     
Sbjct: 7  FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPF 66

Query: 72 DRRTTGQYVQFVDAQGVDYFEN 93
          +  ++G  V+       D +EN
Sbjct: 67 NSMSSG--VKKEFGHEFDLYEN 86

PyMOL of d2qj2a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		589
d2qj2a1		91	Hepatocyte growth factor {Human (Homo sapiens) [Ta	99.08
d2qj2a1		91	Hepatocyte growth factor {Human (Homo sapiens) [Ta	98.42

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.8e-11  Score=95.86  Aligned_cols=77  Identities=19%  Similarity=0.348  Sum_probs=66.2

Q ss_pred             eEEEecCeEEecccce----EEecCCHHHHHHHhhcCC--CceeeeEEeEeccCcEEecCCCccccCcccccccCcCcce
Q psy10620         17 AFERVPNKMIRGLDNA----LIYTSTKEACLAACLNEH--RFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDY   90 (589)
Q Consensus        17 ~Fer~~~~~L~g~~~~----~~~~~s~~~C~~~Cl~~~--~f~CrS~~y~~~~~~C~Ls~~~~~~~p~~~~~~~~~~~~Y   90 (589)
                      .|.+..|..|......    ...+.|.++|..+|+.+.  .|.||||+|+...+.|+|+.+++.+.|..  +..+++.||
T Consensus         6 dy~kt~~~~L~~~~~~~~~~~~~~~s~eeCA~rC~~~~~~~f~CrSF~y~~~~~~C~Ls~~n~~t~~~~--l~~~~~~Dy   83 (91)
T d2qj2a1           6 EFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVK--KEFGHEFDL   83 (91)
T ss_dssp             GEEEETTEEEEECSTTCCCEEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTTTEEEEESSCTTSTTEE--EEECTTEEE
T ss_pred             hhhhcCCceEeccCccccccccccCCHHHHHHHHHccCCCCceEEeEEEECCCCeEEEccccCCCCCee--eecCCCccc
Confidence            5999999999987663    446789999999999854  79999999999999999999999998743  556789999


Q ss_pred             eeccc
Q psy10620         91 FENLC   95 (589)
Q Consensus        91 ~en~C   95 (589)
                      |||..
T Consensus        84 YE~kd   88 (91)
T d2qj2a1          84 YENKD   88 (91)
T ss_dssp             EEEGG
T ss_pred             ccccc
Confidence            99853

PyMOL of d2qj2a1

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure