Psyllid ID: psy10678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVSV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHcccccccEEEEEEEcccccccEEEEEEcccccccHHHHcHHHHcccccEEEEEEcccccEEEEEccccccEEEEEcccccccEEEEEEEEcEEEccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHcccccEEEEEEEEEcccccccEEEEEEcccccccccccccccccccccEcEEEEcccccEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEccccccEcc
Coil and Loop (DISEMBL)
mtpnptsccsgkgpgyrtpvdamrygpreTLLYVICiqpngqhpdylavidvdpqsktyQQVRNTLRAGLAMVTDILISLddrylytsnwmhgdirqydirdtahpvlVGQIflggkiqsdsgvtviddpeldvsv
Flexible Loop (DISEMBL)
mtpnptsccsgkgpgyrtpVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLggkiqsdsgvtviddpeldvsv
Low Complexity Region (SEG)
MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVSV
Disordered region (IsUnstruct)
******************PVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV**********
Disordered Region (DISOPRED)
************GPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD*********ELDV**
Disordered Region (DISEMBL)
***********KGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVSV
Disordered Region (DISPRO)
*******CCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q52KZ7	472	Selenium-binding protein	N/A	N/A	0.441	0.127	0.698	1e-19
Q6PHD9	457	Selenium-binding protein	yes	N/A	0.441	0.131	0.634	3e-18
Q569D5	472	Selenium-binding protein	yes	N/A	0.441	0.127	0.650	5e-18
Q6DCH7	472	Selenium-binding protein	N/A	N/A	0.441	0.127	0.650	1e-17
Q2KJ32	472	Selenium-binding protein	yes	N/A	0.433	0.125	0.629	7e-17
Q8VIF7	472	Selenium-binding protein	yes	N/A	0.433	0.125	0.612	2e-16
P17563	472	Selenium-binding protein	yes	N/A	0.433	0.125	0.612	2e-16
Q63836	472	Selenium-binding protein	yes	N/A	0.433	0.125	0.612	3e-16
Q13228	472	Selenium-binding protein	yes	N/A	0.433	0.125	0.596	4e-16
Q5RF48	472	Selenium-binding protein	yes	N/A	0.433	0.125	0.580	1e-15

>sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-a PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDILISLDDR+LY SNW+HGDIRQYDI DT +P LVGQIFLGG IQ    VTV++D 
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDK 367

Query: 131 ELD 133
           EL+
Sbjct: 368 ELE 370

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.
Xenopus laevis (taxid: 8355)

>sp|Q6PHD9|SBP1_DANRE Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 50/63 (79%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDILISLDDR+LY SNW+HGDIRQYDI D  +P +VGQ+FLGG +  D  V V++D 
Sbjct: 309 GLITDILISLDDRFLYFSNWLHGDIRQYDITDRKNPRMVGQVFLGGSVLKDGPVKVLEDK 368

Query: 131 ELD 133
           ELD
Sbjct: 369 ELD 371

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Danio rerio (taxid: 7955)

>sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/63 (65%), Positives = 50/63 (79%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDILISLDDR+LY SNW+HGDIRQYDI D  +P LVGQIFLGG I     VTV++D 
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITDPRNPKLVGQIFLGGSILRGGPVTVLEDK 367

Query: 131 ELD 133
           +L+
Sbjct: 368 DLE 370

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-b PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDILISLDDR+LY SNW+HGDIRQYDI +  +P LVGQIFLGG IQ    V V +D 
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITNIRNPKLVGQIFLGGSIQKGGPVAVQEDK 367

Query: 131 ELD 133
           EL+
Sbjct: 368 ELE 370

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus laevis (taxid: 8355)

>sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 48/62 (77%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
           +++TDIL+SLDDR+LY SNW+HGD+RQYDI D   P LVGQIFLGG I     V V++D 
Sbjct: 308 SLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQ 367

Query: 131 EL 132
           EL
Sbjct: 368 EL 369

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Bos taurus (taxid: 9913)

>sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D 
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQ 367

Query: 131 EL 132
           EL
Sbjct: 368 EL 369

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Rattus norvegicus (taxid: 10116)

>sp|P17563|SBP1_MOUSE Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D 
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQ 367

Query: 131 EL 132
           EL
Sbjct: 368 EL 369

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Mus musculus (taxid: 10090)

>sp|Q63836|SBP2_MOUSE Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D 
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQ 367

Query: 131 EL 132
           EL
Sbjct: 368 EL 369

Selenium- and acetaminophen-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Mus musculus (taxid: 10090)

>sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 46/62 (74%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDIL+SLDDR+LY SNW+HGD+RQYDI D   P L GQ+FLGG I     V V++D 
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDE 367

Query: 131 EL 132
           EL
Sbjct: 368 EL 369

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Homo sapiens (taxid: 9606)

>sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 46/62 (74%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDIL+SLDDR+LY SNW+HGD+RQYDI D   P L GQ+F+GG I     V V++D 
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQ 367

Query: 131 EL 132
           EL
Sbjct: 368 EL 369

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
291230599	711	PREDICTED: selenium binding protein 1-li	0.441	0.084	0.629	2e-18
291236087	486	PREDICTED: selenium-binding protein 1-li	0.441	0.123	0.693	2e-18
345485514	480	PREDICTED: selenium-binding protein 1-A-	0.448	0.127	0.682	5e-18
91092064	476	PREDICTED: similar to selenium-binding p	0.441	0.126	0.661	8e-18
148224943	472	selenium-binding protein 1-A [Xenopus la	0.441	0.127	0.698	1e-17
336088626	469	selenium-binding protein 1-like [Apis me	0.455	0.132	0.709	1e-17
332372634	475	unknown [Dendroctonus ponderosae]	0.433	0.124	0.640	2e-17
307191199	459	Selenium-binding protein 1-A [Camponotus	0.463	0.137	0.666	2e-17
158288113	447	AGAP011531-PA [Anopheles gambiae str. PE	0.441	0.134	0.693	3e-17
158284346	171	Anopheles gambiae str. PEST AGAP012893-P	0.455	0.362	0.693	3e-17

>gi|291230599|ref|XP_002735253.1| PREDICTED: selenium binding protein 1-like [Saccoglossus kowalevskii]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 54/62 (87%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
           ++VTDI++SLDD+YLY +NW+HGD+RQYDI DT +P LVGQIFLGG + +DSGV +++D 
Sbjct: 326 SLVTDIVLSLDDKYLYFTNWLHGDVRQYDITDTRNPRLVGQIFLGGSVTTDSGVKIVEDK 385

Query: 131 EL 132
           E+
Sbjct: 386 EM 387

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|291236087|ref|XP_002737973.1| PREDICTED: selenium-binding protein 1-like [Saccoglossus kowalevskii]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 55/62 (88%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
           +++TDIL+SLDD+YLY SNW+HGDIRQYD+ DT++P LVGQIFLGG I +DSGV V++D 
Sbjct: 316 SLITDILLSLDDKYLYFSNWVHGDIRQYDVTDTSNPRLVGQIFLGGSITTDSGVKVLEDK 375

Query: 131 EL 132
           EL
Sbjct: 376 EL 377

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|345485514|ref|XP_001606344.2| PREDICTED: selenium-binding protein 1-A-like [Nasonia vitripennis]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            M+T+ILISLDD+YLY SNW+HGD+RQYDI D A+P LVGQ+FLGG I  DS V V++DP
Sbjct: 310 GMITEILISLDDKYLYLSNWLHGDVRQYDITDRANPKLVGQVFLGGSILIDSKVEVLEDP 369

Query: 131 ELD 133
           EL+
Sbjct: 370 ELE 372

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092064|ref|XP_970689.1| PREDICTED: similar to selenium-binding protein [Tribolium castaneum] gi|270004695|gb|EFA01143.1| hypothetical protein TcasGA2_TC010368 [Tribolium castaneum]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            M+TDIL+SLDD+YLY +NW+HGD+RQYDI D AHP L GQ+FLGGKI  DS + V++D 
Sbjct: 309 GMITDILLSLDDKYLYLNNWLHGDVRQYDISDPAHPKLTGQLFLGGKILKDSKIKVLEDK 368

Query: 131 EL 132
           EL
Sbjct: 369 EL 370

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148224943|ref|NP_001089396.1| selenium-binding protein 1-A [Xenopus laevis] gi|82177910|sp|Q52KZ7.1|SBP1A_XENLA RecName: Full=Selenium-binding protein 1-A gi|62740105|gb|AAH94129.1| MGC115145 protein [Xenopus laevis]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            ++TDILISLDDR+LY SNW+HGDIRQYDI DT +P LVGQIFLGG IQ    VTV++D 
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDK 367

Query: 131 ELD 133
           EL+
Sbjct: 368 ELE 370

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|336088626|ref|NP_001229508.1| selenium-binding protein 1-like [Apis mellifera]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            M+TDILISLDD+YLY SNW+HGDIRQY+I DT  P LVGQIFLGG I +DS + VI D 
Sbjct: 302 GMITDILISLDDKYLYLSNWLHGDIRQYNISDTERPKLVGQIFLGGSILNDSKIRVIQDN 361

Query: 131 EL 132
           EL
Sbjct: 362 EL 363

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372634|gb|AEE61459.1| unknown [Dendroctonus ponderosae]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            +++DILISLDDR+LY SNW+HGD+RQYDI D A P L GQ+FLGG     S VTV++DP
Sbjct: 308 GLISDILISLDDRFLYFSNWLHGDVRQYDITDPAKPKLTGQVFLGGAFVKGSAVTVLEDP 367

Query: 131 ELDV 134
           ELD 
Sbjct: 368 ELDA 371

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191199|gb|EFN74896.1| Selenium-binding protein 1-A [Camponotus floridanus]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 52/63 (82%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            M+TDIL+SLDD+YLY SNW+HGD+RQYDI DT +P L GQIFLGG I +DS V VI+D 
Sbjct: 307 GMITDILLSLDDKYLYLSNWLHGDVRQYDISDTKNPKLTGQIFLGGSILNDSQVRVIEDE 366

Query: 131 ELD 133
           E++
Sbjct: 367 EMN 369

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288113|ref|XP_309978.4| AGAP011531-PA [Anopheles gambiae str. PEST] gi|157019318|gb|EAA05714.4| AGAP011531-PA [Anopheles gambiae str. PEST]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            M+TDILISLDDRYLY SNW HGD+RQYDI D A+P L GQ+FLGG IQ D+   V++DP
Sbjct: 295 GMMTDILISLDDRYLYFSNWRHGDVRQYDISDRANPRLTGQVFLGGAIQRDAPRRVLNDP 354

Query: 131 EL 132
           EL
Sbjct: 355 EL 356

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158284346|ref|XP_306270.3| Anopheles gambiae str. PEST AGAP012893-PA [Anopheles gambiae str. PEST] gi|157021094|gb|EAA45842.3| AGAP012893-PA [Anopheles gambiae str. PEST]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
            M+TDILISLDDRYLY SNW HGD+RQYDI D A+P L GQ+FLGG IQ D+   V++DP
Sbjct: 4   GMMTDILISLDDRYLYFSNWRHGDVRQYDISDRANPRLTGQVFLGGAIQRDAPRRVLNDP 63

Query: 131 EL 132
           EL
Sbjct: 64  EL 65

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
ZFIN|ZDB-GENE-040426-1436	473	selenbp1 "selenium binding pro	0.455	0.131	0.645	2.5e-33
UNIPROTKB|H9KYX6	472	LOC100857226 "Uncharacterized	0.448	0.129	0.672	2.9e-32
FB|FBgn0038115	486	CG7966 [Drosophila melanogaste	0.448	0.125	0.596	3.5e-31
UNIPROTKB|Q2KJ32	472	SELENBP1 "Selenium-binding pro	0.455	0.131	0.629	8.6e-30
RGD|620571	472	Selenbp1 "selenium binding pro	0.448	0.129	0.622	9.6e-30
UNIPROTKB|Q8VIF7	472	Selenbp1 "Selenium-binding pro	0.448	0.129	0.622	9.6e-30
MGI|MGI:96825	472	Selenbp1 "selenium binding pro	0.448	0.129	0.622	9.7e-30
UNIPROTKB|Q13228	472	SELENBP1 "Selenium-binding pro	0.448	0.129	0.606	1.2e-29
MGI|MGI:104859	472	Selenbp2 "selenium binding pro	0.448	0.129	0.622	1.2e-29
UNIPROTKB|F1ST01	472	SELENBP1 "Uncharacterized prot	0.455	0.131	0.596	1.9e-29

ZFIN|ZDB-GENE-040426-1436 selenbp1 "selenium binding protein 1" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
 Identities = 40/62 (64%), Positives = 50/62 (80%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDILISLDDR+LY SNW+HGDIRQYDI D  +P +VGQ+FLGG +  D  V V++D E
Sbjct:   310 LITDILISLDDRFLYFSNWLHGDIRQYDITDRKNPRMVGQVFLGGSVLKDGPVKVLEDKE 369

Query:   132 LD 133
             LD
Sbjct:   370 LD 371

GO:0008430 "selenium binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|H9KYX6 LOC100857226 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
 Identities = 41/61 (67%), Positives = 49/61 (80%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDILISLDDR+LY SNW+HGDIRQYDI +T  P LVGQ+FLGG I     VTV++D E
Sbjct:   309 LITDILISLDDRFLYFSNWLHGDIRQYDISNTRQPKLVGQVFLGGSIVRGGPVTVVEDKE 368

Query:   132 L 132
             L
Sbjct:   369 L 369

GO:0008430 "selenium binding" evidence=IEA

FB|FBgn0038115 CG7966 [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
 Identities = 37/62 (59%), Positives = 46/62 (74%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD-SGVTVIDDP 130
             M++DI+ISLDDR+LY + W HGD+RQYDI D  +P L GQ+FLGG I SD   V V +D 
Sbjct:   318 MISDIIISLDDRFLYVNCWRHGDVRQYDITDPENPKLTGQLFLGGAICSDLPNVIVKEDK 377

Query:   131 EL 132
             EL
Sbjct:   378 EL 379

GO:0008430 "selenium binding" evidence=ISS

UNIPROTKB|Q2KJ32 SELENBP1 "Selenium-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 39/62 (62%), Positives = 48/62 (77%)

Query:    71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
             +++TDIL+SLDDR+LY SNW+HGD+RQYDI D   P LVGQIFLGG I     V V++D 
Sbjct:   308 SLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQ 367

Query:   131 EL 132
             EL
Sbjct:   368 EL 369

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

RGD|620571 Selenbp1 "selenium binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D E
Sbjct:   309 LITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQE 368

Query:   132 L 132
             L
Sbjct:   369 L 369

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=ISO

UNIPROTKB|Q8VIF7 Selenbp1 "Selenium-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D E
Sbjct:   309 LITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQE 368

Query:   132 L 132
             L
Sbjct:   369 L 369

GO:0008430 "selenium binding" evidence=IEA

MGI|MGI:96825 Selenbp1 "selenium binding protein 1" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 9.7e-30, Sum P(2) = 9.7e-30
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D E
Sbjct:   309 LITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQE 368

Query:   132 L 132
             L
Sbjct:   369 L 369

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008430 "selenium binding" evidence=TAS

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=IDA

UNIPROTKB|Q13228 SELENBP1 "Selenium-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 37/61 (60%), Positives = 46/61 (75%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDIL+SLDDR+LY SNW+HGD+RQYDI D   P L GQ+FLGG I     V V++D E
Sbjct:   309 LITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEE 368

Query:   132 L 132
             L
Sbjct:   369 L 369

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:104859 Selenbp2 "selenium binding protein 2" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query:    72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 131
             ++TDIL+SLDDR+LY SNW+HGDIRQYDI +   P L GQIFLGG I     V V++D E
Sbjct:   309 LITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQE 368

Query:   132 L 132
             L
Sbjct:   369 L 369

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1ST01 SELENBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query:    71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
             +++TDIL+SLDDR+LY SNW+HGD+RQYDI D   P L GQ+FLGG I     V V++D 
Sbjct:   308 SLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVKGGPVQVLEDQ 367

Query:   131 EL 132
             EL
Sbjct:   368 EL 369

GO:0005730 "nucleolus" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13228	SBP1_HUMAN	No assigned EC number	0.5967	0.4338	0.125	yes	N/A
Q569D5	SBP1_XENTR	No assigned EC number	0.6507	0.4411	0.1271	yes	N/A
Q2KJ32	SBP1_BOVIN	No assigned EC number	0.6290	0.4338	0.125	yes	N/A
Q5RF48	SBP1_PONAB	No assigned EC number	0.5806	0.4338	0.125	yes	N/A
Q9LK38	SEBP3_ARATH	No assigned EC number	0.5762	0.4117	0.1166	yes	N/A
Q6PHD9	SBP1_DANRE	No assigned EC number	0.6349	0.4411	0.1312	yes	N/A
P17563	SBP1_MOUSE	No assigned EC number	0.6129	0.4338	0.125	yes	N/A
Q63836	SBP2_MOUSE	No assigned EC number	0.6129	0.4338	0.125	yes	N/A
Q8VIF7	SBP1_RAT	No assigned EC number	0.6129	0.4338	0.125	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
pfam05694	461	pfam05694, SBP56, 56kDa selenium binding protein (	1e-24
pfam05694	461	pfam05694, SBP56, 56kDa selenium binding protein (	1e-18

>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56)

 Score = 97.0 bits (242), Expect = 1e-24
 Identities = 31/51 (60%), Positives = 38/51 (74%)

Query: 71  AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD 121
            +VTDIL+SLDDR+LY S W HGD+RQYDI D  +P L GQ+ LGG I+  
Sbjct: 312 PLVTDILLSLDDRFLYVSCWGHGDLRQYDISDPFNPKLTGQVRLGGIIRRA 362

This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport. Length = 461

>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56)

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 13 GPGYRTPVDAMRYGPRETLLYVICIQPNGQ--HPDYLAVIDVDPQSKTYQQV 62
          GPGY +P+DAM+  PRE L YV  + P      PDYLAV+DVDP+S TY QV
Sbjct: 4  GPGYASPLDAMK-APREKLAYVAALYPGTGIEKPDYLAVVDVDPESPTYGQV 54

This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport. Length = 461

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	100.0
KOG0918|consensus	476		99.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	99.91
KOG0918|consensus	476		99.55
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	97.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.19
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.73
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.29
PRK11028	330	6-phosphogluconolactonase; Provisional	93.74
PRK11028	330	6-phosphogluconolactonase; Provisional	93.53
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	92.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.57
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	92.56
COG5276	370	Uncharacterized conserved protein [Function unknow	92.14
COG5276	370	Uncharacterized conserved protein [Function unknow	91.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.19
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	89.22
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	88.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	86.6
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	82.56

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=100.00  E-value=1.8e-34  Score=253.89  Aligned_cols=105  Identities=45%  Similarity=0.693  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHhcCCCCceeEEEEecCCCC--CCCeEEEEeeCCCCCcccccccccc--------------cCCCcc-c
Q psy10678         12 KGPGYRTPVDAMRYGPRETLLYVICIQPNGQ--HPDYLAVIDVDPQSKTYQQVRNTLR--------------AGLAMV-T   74 (136)
Q Consensus        12 ~~~~y~sp~~Am~~ap~Ek~dYvatldvd~~--spdyl~VIdv~p~s~~y~ev~~~~~--------------a~~~~~-g   74 (136)
                      ++|+|+||++||+ +|+|+++||+|++++..  .||||||||++|.|+||+||+||+.              ||++|+ +
T Consensus         3 ~~p~y~SP~~A~~-~p~E~l~YV~~~~~~~~~~~pD~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~   81 (461)
T PF05694_consen    3 PGPGYASPLDAMK-GPREKLLYVWCLYPGTGIDKPDYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYG   81 (461)
T ss_dssp             --TT-SSHHHHHT-S---SEEEEEEE-TTTT-----EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT-
T ss_pred             CCcCCCCHHHHhh-CCCceEEEEEeecCCCCCCCCCeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCC
Confidence            3556999999998 99999999999998765  8999999999998888888865542              455555 4


Q ss_pred             cccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeecceeccCCceEEcCCCcccc
Q psy10678         75 DILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDV  134 (136)
Q Consensus        75 D~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~~~~~~~vkvie~~el~~  134 (136)
                      |  .+++|||||+|||+||||||+|| +||++|+|               +||||++||++
T Consensus        82 ~--~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l---------------~KvIe~~ev~~  125 (461)
T PF05694_consen   82 D--PSKERRYLILPGLRSSRIYVIDTKTDPRKPRL---------------HKVIEPEEVFE  125 (461)
T ss_dssp             ---TT--S-EEEEEBTTT--EEEEE--S-TTS-EE---------------EEEE-HHHHHH
T ss_pred             C--CcccCCcEEeeeeccCcEEEEECCCCCCCCce---------------EeeeCHHHHHh
Confidence            3  56899999999999999999999 79999999               99999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0918|consensus

Probab=99.97  E-value=2.9e-32  Score=238.48  Aligned_cols=58  Identities=62%  Similarity=1.071  Sum_probs=56.2

Q ss_pred             CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecceeccCCceEEcCCCccccc
Q psy10678         78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVS  135 (136)
Q Consensus        78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~~~~vkvie~~el~~~  135 (136)
                      +|+||||||++||+||+|+||||+||.+|+|+|||||||+++++++|||+|++++++|
T Consensus       319 ISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~  376 (476)
T KOG0918|consen  319 ISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQ  376 (476)
T ss_pred             EeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCC
Confidence            7999999999999999999999999999999999999999999999999999988765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=99.91  E-value=4.8e-25  Score=194.47  Aligned_cols=78  Identities=49%  Similarity=0.816  Sum_probs=47.5

Q ss_pred             EEEEeeCCCCCccc---ccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecceeccCCc
Q psy10678         47 LAVIDVDPQSKTYQ---QVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG  123 (136)
Q Consensus        47 l~VIdv~p~s~~y~---ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~~~~  123 (136)
                      -.||++.+.+....   +++.++.+++++++||++|+|||||||+||++|+|+|||||||++|||+|||||||+++++.+
T Consensus       285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~  364 (461)
T PF05694_consen  285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH  364 (461)
T ss_dssp             EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred             eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence            34666665533322   223344445666777778999999999999999999999999999999999999999999844


Q ss_pred             e
Q psy10678        124 V  124 (136)
Q Consensus       124 v  124 (136)
                      .
T Consensus       365 ~  365 (461)
T PF05694_consen  365 P  365 (461)
T ss_dssp             T
T ss_pred             c
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0918|consensus

Probab=99.55  E-value=6.2e-15  Score=130.06  Aligned_cols=113  Identities=29%  Similarity=0.453  Sum_probs=99.2

Q ss_pred             CCCCCCCccCCCCCCCCCHHHHHhcCCCCc---------------eeEEEEecCCCCCCCeEEEEeeCCCCCccccc--c
Q psy10678          1 MTPNPTSCCSGKGPGYRTPVDAMRYGPRET---------------LLYVICIQPNGQHPDYLAVIDVDPQSKTYQQV--R   63 (136)
Q Consensus         1 ~~~~~~~~~~~~~~~y~sp~~Am~~ap~Ek---------------~dYvatldvd~~spdyl~VIdv~p~s~~y~ev--~   63 (136)
                      |......||+.. ++|+||.+||+ .|+|+               +||++|||+||+||+||+|||+.+++..+||+  +
T Consensus         3 ~~~~~~~~~~~g-p~~~tP~~a~~-gpre~l~~~~~~~~~~g~~~~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhs   80 (476)
T KOG0918|consen    3 MNGISGDCCKSG-PGYATPLAAMS-GPREKLIYVVAVYTGTGYEKPDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHS   80 (476)
T ss_pred             ccccccchhccC-CCcCCchHhhh-CccceeEEEeccccCCCCcCCcceeEEecCCCCCcceeeEEEeccCcccchhccc
Confidence            344556666444 99999999998 88865               78889999999999999999999999999999  6


Q ss_pred             cccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeecceeccCCceEEcCCCccc
Q psy10678         64 NTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD  133 (136)
Q Consensus        64 ~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~~~~~~~vkvie~~el~  133 (136)
                      ||| +|++|++|  .+.+||+|++|++.|+||||||+ ++|++|.|               +|+|+++.|.
T Consensus        81 gwn-~~ssc~~~--~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l---------------~k~i~~~il~  133 (476)
T KOG0918|consen   81 GWN-SCSSCHGD--SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL---------------EKTIDPDILE  133 (476)
T ss_pred             chh-hhhhhccC--cchhhhheeecccccCceEEEEeccCcCccce---------------eeeechhhHh
Confidence            688 79999999  68899999999999999999999 89999999               7777775554

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=97.70  E-value=7.9e-05  Score=46.78  Aligned_cols=33  Identities=30%  Similarity=0.591  Sum_probs=28.2

Q ss_pred             CCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEE
Q psy10678         79 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI  112 (136)
Q Consensus        79 s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v  112 (136)
                      ....+|+|+..+..| +.++|||||.+|++++++
T Consensus         8 ~v~g~yaYva~~~~G-l~IvDISnPs~P~~v~~~   40 (42)
T PF08309_consen    8 AVSGNYAYVADGNNG-LVIVDISNPSNPVLVGSY   40 (42)
T ss_pred             EEECCEEEEEeCCCC-EEEEECCCCCCCEEEEEe
Confidence            456889999977654 899999999999998886

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.19  E-value=0.016  Score=33.76  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=28.5

Q ss_pred             CCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678         80 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  116 (136)
Q Consensus        80 ~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg  116 (136)
                      ++.++||+.++.++.|.++|.   ..-++.++|.+|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEECCC
Confidence            367899999999999999988   3457888898864

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.73  E-value=0.078  Score=45.58  Aligned_cols=65  Identities=31%  Similarity=0.423  Sum_probs=43.5

Q ss_pred             CeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeeccee
Q psy10678         45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI  118 (136)
Q Consensus        45 dyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~  118 (136)
                      ..++|||..-.     ++++.++..-..++....+.|.||||+.+ ++|.|.+||+..   -+++++|.+|+..
T Consensus        16 ~~v~viD~~t~-----~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~---~~~v~~i~~G~~~   80 (369)
T PF02239_consen   16 GSVAVIDGATN-----KVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLAT---GKVVATIKVGGNP   80 (369)
T ss_dssp             TEEEEEETTT------SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTS---SSEEEEEE-SSEE
T ss_pred             CEEEEEECCCC-----eEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCc---ccEEEEEecCCCc
Confidence            46788886653     66666643233355444788999999998 689999999832   2489999998754

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.34  E-value=0.32  Score=42.34  Aligned_cols=82  Identities=17%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             CCCCceeEEEEecCC----CCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCC-eEEEccCCCCcEEEEeC
Q psy10678         26 GPRETLLYVICIQPN----GQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDR-YLYTSNWMHGDIRQYDI  100 (136)
Q Consensus        26 ap~Ek~dYvatldvd----~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr-~L~vp~l~sgrIyv~Dv  100 (136)
                      .+..+..||++....    ...-+.++|||..-     .+++..+...-... -+..|+|.+ .||+.+..++.|.+||+
T Consensus       256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-----~kvi~~i~vG~~~~-~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-----GKRLRKIELGHEID-SINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             cCCCCEEEEEecCCccccccCCCCEEEEEECCC-----CeEEEEEeCCCcee-eEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            577888999987554    23347999999755     36666553111111 123688999 99999999999999997


Q ss_pred             CCCCCCeEeEEE-eecc
Q psy10678        101 RDTAHPVLVGQI-FLGG  116 (136)
Q Consensus       101 sDP~~PkL~~~v-~~gg  116 (136)
                         ..-|++++| .+|+
T Consensus       330 ---~t~k~i~~i~~vg~  343 (352)
T TIGR02658       330 ---ETGKELSSVNQLGR  343 (352)
T ss_pred             ---cCCeEEeeeccCCC
Confidence               444778888 6664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.29  E-value=0.071  Score=45.82  Aligned_cols=91  Identities=25%  Similarity=0.316  Sum_probs=55.3

Q ss_pred             CCCCCCHHHHHhcCCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCC
Q psy10678         13 GPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMH   92 (136)
Q Consensus        13 ~~~y~sp~~Am~~ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~s   92 (136)
                      +++++.+....- +|-.+.+||+.  -|    -.+.+||....     +++....++...+| +-.|.|.||||+.|+..
T Consensus        33 ~~~~~~h~~~~~-s~Dgr~~yv~~--rd----g~vsviD~~~~-----~~v~~i~~G~~~~~-i~~s~DG~~~~v~n~~~   99 (369)
T PF02239_consen   33 PTGGAPHAGLKF-SPDGRYLYVAN--RD----GTVSVIDLATG-----KVVATIKVGGNPRG-IAVSPDGKYVYVANYEP   99 (369)
T ss_dssp             E-STTEEEEEE--TT-SSEEEEEE--TT----SEEEEEETTSS-----SEEEEEE-SSEEEE-EEE--TTTEEEEEEEET
T ss_pred             cCCCCceeEEEe-cCCCCEEEEEc--CC----CeEEEEECCcc-----cEEEEEecCCCcce-EEEcCCCCEEEEEecCC
Confidence            344443333333 67788899974  22    37999998875     56555533333333 33688999999999999


Q ss_pred             CcEEEEeCCCCCCCeEeEEEeecceec
Q psy10678         93 GDIRQYDIRDTAHPVLVGQIFLGGKIQ  119 (136)
Q Consensus        93 grIyv~DvsDP~~PkL~~~v~~gg~~~  119 (136)
                      +.+.++|...   =+++++|..+|.-.
T Consensus       100 ~~v~v~D~~t---le~v~~I~~~~~~~  123 (369)
T PF02239_consen  100 GTVSVIDAET---LEPVKTIPTGGMPV  123 (369)
T ss_dssp             TEEEEEETTT-----EEEEEE--EE-T
T ss_pred             CceeEecccc---ccceeecccccccc
Confidence            9999999833   25678888877654

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=93.74  E-value=0.4  Score=38.82  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCC-CCC
Q psy10678         26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIR-DTA  104 (136)
Q Consensus        26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dvs-DP~  104 (136)
                      .|.++..|++.     ...+-+.|++++..... -++++... .-....++.++++.++||+.+..++.|.+|++. +-.
T Consensus       236 ~pdg~~lyv~~-----~~~~~I~v~~i~~~~~~-~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g  308 (330)
T PRK11028        236 TPDGRHLYACD-----RTASLISVFSVSEDGSV-LSFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG  308 (330)
T ss_pred             CCCCCEEEEec-----CCCCeEEEEEEeCCCCe-EEEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence            57788888862     33457889998765321 12333331 112334555788999999999999999999984 334


Q ss_pred             CCeEeEEEeecc
Q psy10678        105 HPVLVGQIFLGG  116 (136)
Q Consensus       105 ~PkL~~~v~~gg  116 (136)
                      +.+.++++.+|+
T Consensus       309 ~l~~~~~~~~g~  320 (330)
T PRK11028        309 LLTELGRYAVGQ  320 (330)
T ss_pred             cEEEccccccCC
Confidence            567777776654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=93.53  E-value=0.76  Score=37.20  Aligned_cols=91  Identities=19%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             CHHHHHhcCCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCC-----cc-ccccCCCCCCeEEEccCC
Q psy10678         18 TPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLA-----MV-TDILISLDDRYLYTSNWM   91 (136)
Q Consensus        18 sp~~Am~~ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~-----~~-gD~l~s~drr~L~vp~l~   91 (136)
                      .|+...- .|..+..|++.-     .-+-+.++++++...+. +++......+.     .. -++.++++.||||+.+..
T Consensus       176 ~p~~~~~-~pdg~~lyv~~~-----~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~  248 (330)
T PRK11028        176 GPRHMVF-HPNQQYAYCVNE-----LNSSVDVWQLKDPHGEI-ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT  248 (330)
T ss_pred             CCceEEE-CCCCCEEEEEec-----CCCEEEEEEEeCCCCCE-EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence            3443333 566777777642     13556666666432222 22222211111     01 134467899999999999


Q ss_pred             CCcEEEEeC-CCCCCCeEeEEEeec
Q psy10678         92 HGDIRQYDI-RDTAHPVLVGQIFLG  115 (136)
Q Consensus        92 sgrIyv~Dv-sDP~~PkL~~~v~~g  115 (136)
                      ++.|.+||+ ++-..-++.+.+..|
T Consensus       249 ~~~I~v~~i~~~~~~~~~~~~~~~~  273 (330)
T PRK11028        249 ASLISVFSVSEDGSVLSFEGHQPTE  273 (330)
T ss_pred             CCeEEEEEEeCCCCeEEEeEEEecc
Confidence            999999999 565566788888765

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=92.66  E-value=0.38  Score=43.71  Aligned_cols=78  Identities=22%  Similarity=0.359  Sum_probs=43.6

Q ss_pred             eeEEEEec-CCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCc-----------EEEE
Q psy10678         31 LLYVICIQ-PNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGD-----------IRQY   98 (136)
Q Consensus        31 ~dYvatld-vd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgr-----------Iyv~   98 (136)
                      -+|++|+- +||     |=|||+..-  .-=+|+|.+.  -|.+.+-|--.++.+|+-=|.....           |=.|
T Consensus       337 ~~Y~VTFrqvDP-----LfviDLsdP--~~P~vlGeLK--IPGfS~YLHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLF  407 (521)
T PF09826_consen  337 RAYLVTFRQVDP-----LFVIDLSDP--ANPKVLGELK--IPGFSDYLHPYDENHLLGIGKDTDEDEGTGWTQGLKISLF  407 (521)
T ss_pred             eEEEEEEeecCc-----eEEEECCCC--CCCceeeEEE--CccchhceeECCCCeEEEEcccCcccccccccceeEEEEE
Confidence            47888762 232     444554321  1114445442  2333333222245555544443333           6789


Q ss_pred             eCCCCCCCeEeEEEeecce
Q psy10678         99 DIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        99 DvsDP~~PkL~~~v~~gg~  117 (136)
                      |||||.+|+...++.||+.
T Consensus       408 DVSD~~~P~e~~~~~iG~~  426 (521)
T PF09826_consen  408 DVSDPANPKELDKEVIGDR  426 (521)
T ss_pred             ecCCCCCccEeEEEEcCCC
Confidence            9999999999999999653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.57  E-value=1  Score=37.60  Aligned_cols=79  Identities=30%  Similarity=0.455  Sum_probs=51.7

Q ss_pred             CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC-CCCC
Q psy10678         26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTA  104 (136)
Q Consensus        26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~  104 (136)
                      .|..++.||..-.     .+-++++++++...+-.. +.+....-...-++.++++.+|||+.+-.|++|.+|++ .+--
T Consensus       253 spdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~-~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  253 SPDGRFLYVSNRG-----SNSISVFDLDPATGTLTL-VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             -TTSSEEEEEECT-----TTEEEEEEECTTTTTEEE-EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ecCCCEEEEEecc-----CCEEEEEEEecCCCceEE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence            6888888887654     788999999876433222 44442111223455578899999999999999999998 3433


Q ss_pred             CCeEeE
Q psy10678        105 HPVLVG  110 (136)
Q Consensus       105 ~PkL~~  110 (136)
                      .-+.++
T Consensus       327 ~l~~~~  332 (345)
T PF10282_consen  327 KLTPVG  332 (345)
T ss_dssp             EEEEEE
T ss_pred             cEEEec
Confidence            334333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=92.56  E-value=0.94  Score=39.49  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             HHHHHhcCCCCceeEEEEecC----CCCCCCeEEEEeeCCCCCccccccccccc--CCCccccccCCCCCCeEEEccCC-
Q psy10678         19 PVDAMRYGPRETLLYVICIQP----NGQHPDYLAVIDVDPQSKTYQQVRNTLRA--GLAMVTDILISLDDRYLYTSNWM-   91 (136)
Q Consensus        19 p~~Am~~ap~Ek~dYvatldv----d~~spdyl~VIdv~p~s~~y~ev~~~~~a--~~~~~gD~l~s~drr~L~vp~l~-   91 (136)
                      |+- +. +|-.+..|++.-.-    =+++-|+++|||..-......-.++--+.  ..+.....-+|.|.|+||+.++- 
T Consensus        49 P~~-~~-spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p  126 (352)
T TIGR02658        49 PNP-VV-ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP  126 (352)
T ss_pred             Cce-eE-CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC
Confidence            444 34 78888999998843    24667999999998863332222221100  01111223378899999999999 


Q ss_pred             CCcEEEEeC-CCCCCCeEeEEEeecc
Q psy10678         92 HGDIRQYDI-RDTAHPVLVGQIFLGG  116 (136)
Q Consensus        92 sgrIyv~Dv-sDP~~PkL~~~v~~gg  116 (136)
                      ...|-++|+ +.    |++++|-++|
T Consensus       127 ~~~V~VvD~~~~----kvv~ei~vp~  148 (352)
T TIGR02658       127 SPAVGVVDLEGK----AFVRMMDVPD  148 (352)
T ss_pred             CCEEEEEECCCC----cEEEEEeCCC
Confidence            999999999 34    7889998877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.14  E-value=0.24  Score=43.74  Aligned_cols=45  Identities=27%  Similarity=0.654  Sum_probs=36.3

Q ss_pred             CCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678         70 LAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        70 ~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~  117 (136)
                      ..++-|  ....+.|.|+..|-+| ++++|+|+|.+|++.++..+.|.
T Consensus        86 ~~l~~D--v~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gy  130 (370)
T COG5276          86 RDLFAD--VRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGY  130 (370)
T ss_pred             hhhhhe--eEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCce
Confidence            345556  3557999999998666 89999999999999998887543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.90  E-value=0.85  Score=40.35  Aligned_cols=77  Identities=22%  Similarity=0.295  Sum_probs=48.9

Q ss_pred             CceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCcc-ccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCe
Q psy10678         29 ETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMV-TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV  107 (136)
Q Consensus        29 Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~-gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~Pk  107 (136)
                      .+.+||+-+      -+-+-+||+-.-+  --+|.++. +.++.- -|.  .-.-+|-|+.+|.- -+-++|+|||..|+
T Consensus       138 Gn~aYVadl------ddgfLivdvsdps--sP~lagry-a~~~~d~~~v--~ISGn~AYvA~~d~-GL~ivDVSnp~sPv  205 (370)
T COG5276         138 GNYAYVADL------DDGFLIVDVSDPS--SPQLAGRY-ALPGGDTHDV--AISGNYAYVAWRDG-GLTIVDVSNPHSPV  205 (370)
T ss_pred             CCEEEEeec------cCcEEEEECCCCC--Cceeeeee-ccCCCCceeE--EEecCeEEEEEeCC-CeEEEEccCCCCCe
Confidence            345666655      3556677764322  12566666 233321 132  33567778876654 47899999999999


Q ss_pred             EeEEEeecce
Q psy10678        108 LVGQIFLGGK  117 (136)
Q Consensus       108 L~~~v~~gg~  117 (136)
                      |.+....||.
T Consensus       206 li~~~n~g~g  215 (370)
T COG5276         206 LIGSYNTGPG  215 (370)
T ss_pred             EEEEEecCCc
Confidence            9999999953

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.19  E-value=0.95  Score=39.94  Aligned_cols=84  Identities=30%  Similarity=0.378  Sum_probs=63.1

Q ss_pred             CCCceeEEEE-----ecC---CC--CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEE
Q psy10678         27 PRETLLYVIC-----IQP---NG--QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIR   96 (136)
Q Consensus        27 p~Ek~dYvat-----ldv---d~--~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIy   96 (136)
                      |..|++|+++     |+|   ++  ..=+=+|+|+..|.-.++.   .|.       .++.++.+-||||+++=.++-|.
T Consensus       200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~---~~~-------aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT---NWA-------AAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC---Cce-------eEEEECCCCCEEEEecCCCCeEE
Confidence            6689999974     444   44  3445678888888753221   233       56778999999999999999999


Q ss_pred             EEeC-CCCCCCeEeEEEeecceecc
Q psy10678         97 QYDI-RDTAHPVLVGQIFLGGKIQS  120 (136)
Q Consensus        97 v~Dv-sDP~~PkL~~~v~~gg~~~~  120 (136)
                      +|-| .+-.+=.++++...+|..-|
T Consensus       270 ~f~V~~~~g~L~~~~~~~teg~~PR  294 (346)
T COG2706         270 VFSVDPDGGKLELVGITPTEGQFPR  294 (346)
T ss_pred             EEEEcCCCCEEEEEEEeccCCcCCc
Confidence            9999 56677888999999998433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=89.22  E-value=0.67  Score=38.63  Aligned_cols=45  Identities=38%  Similarity=0.548  Sum_probs=38.5

Q ss_pred             ccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeeccee
Q psy10678         74 TDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGKI  118 (136)
Q Consensus        74 gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~~  118 (136)
                      .++.+++|.||||+++-.++.|-+|++ .+-.+.++++.+..||..
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~  293 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF  293 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence            456689999999999999999999999 555789999999998874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=88.90  E-value=0.54  Score=42.70  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=27.6

Q ss_pred             CCCcEEEEeCCCCCCCeEeEEEeecceeccC
Q psy10678         91 MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD  121 (136)
Q Consensus        91 ~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~~  121 (136)
                      ..-+|++|||+||.+|++.+++.+-|.+...
T Consensus        96 ~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsS  126 (521)
T PF09826_consen   96 SSTKITVYDISDPSNPKLLREIEIEGSYVSS  126 (521)
T ss_pred             ceeEEEEEECCCCCCceEEEEEEeeeEEEeE
Confidence            3668999999999999999999999988664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=86.60  E-value=7.1  Score=29.48  Aligned_cols=63  Identities=24%  Similarity=0.323  Sum_probs=39.2

Q ss_pred             CeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678         45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  116 (136)
Q Consensus        45 dyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg  116 (136)
                      +-++++|+...     +++.... .......+..+++.++||+.+=.++.|.+||+..   -+.+++|.+|+
T Consensus       229 ~~i~v~d~~~~-----~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~---~~~~~~~~~~~  291 (300)
T TIGR03866       229 NRVAVVDAKTY-----EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA---LKVIKSIKVGR  291 (300)
T ss_pred             CeEEEEECCCC-----cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEccc
Confidence            35777876532     3322110 1112233446778889999887899999999843   45667777654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=82.56  E-value=1.5  Score=31.22  Aligned_cols=25  Identities=36%  Similarity=0.574  Sum_probs=22.6

Q ss_pred             ccCCCCCCeEEEccCCCCcEEEEeC
Q psy10678         76 ILISLDDRYLYTSNWMHGDIRQYDI  100 (136)
Q Consensus        76 ~l~s~drr~L~vp~l~sgrIyv~Dv  100 (136)
                      |..++++++|||+......|++|..
T Consensus        59 I~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   59 IAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             EEEcCCCCEEEEEeccCCeEEEEEe
Confidence            4468899999999999999999987

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
2ece_A	462	X-Ray Structure Of Hypothetical Selenium-Binding Pr		6e-10

>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein From Sulfolobus Tokodaii, St0059 Length = 462

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 50  IDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV 109
           I  +P      ++    +A   +VTDI ISLDD++LY S W  G++RQYDI +   PVL 
Sbjct: 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLT 359
Query: 110 GQIFLGG 116
           G++ LGG
Sbjct: 360 GKVKLGG 366

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2ece_A	462	462AA long hypothetical selenium-binding protein;	1e-17
2ece_A	462	462AA long hypothetical selenium-binding protein;	3e-14
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	4e-04

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Length = 462

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 34  VICIQPNGQHPDYLAVIDVDPQSKTY--QQVRNTLRAGLAMVTDILISLDDRYLYTSNWM 91
           +          +   VI++  +       ++    +A   +VTDI ISLDD++LY S W 
Sbjct: 282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341

Query: 92  HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 124
            G++RQYDI +   PVL G++ LGG        
Sbjct: 342 IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP 374

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Length = 462

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 28/143 (19%)

Query: 1   MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKT 58
              +PT         Y +P  AM+  P E L YV C+         D++AV+DV+P+S+T
Sbjct: 6   FKRDPT--------FYPSPKMAMK-APPEDLAYVACLYTGTGINRADFIAVVDVNPKSET 56

Query: 59  YQQVRNTLR---------------AGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RD 102
           Y ++ + +                   A+  +   +++ R+L         I   D   +
Sbjct: 57  YSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPN 116

Query: 103 TAHPVLVGQIFLGGKIQSDSGVT 125
              P ++ ++    +++  SG +
Sbjct: 117 PREPKII-KVIEPEEVKKVSGYS 138

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Length = 347

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 23  MRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQ--QVRNTLRAGLAMVT---DIL 77
           + + P     ++   + + Q    +A +  D Q+  +    +  T+ A          I 
Sbjct: 192 LVFSPDGQYAFLAG-ELSSQ----IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246

Query: 78  ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 117
           +S D  +LY SN  +  +  + +    H  L+ QI   G 
Sbjct: 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.63
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	93.88
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	93.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	92.97
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	92.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	92.18
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	92.05
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	91.98
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	91.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	91.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	90.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	89.83
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	89.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	89.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	88.25
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	88.25
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	85.62
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	85.26
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	84.01
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	83.99
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	82.5

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.97  E-value=2.3e-31  Score=232.92  Aligned_cols=98  Identities=27%  Similarity=0.435  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHhcCCCCceeEEEEecC--CCCCCCeEEEEeeCCCCCccccccc---------------ccccCCCccc
Q psy10678         12 KGPGYRTPVDAMRYGPRETLLYVICIQP--NGQHPDYLAVIDVDPQSKTYQQVRN---------------TLRAGLAMVT   74 (136)
Q Consensus        12 ~~~~y~sp~~Am~~ap~Ek~dYvatldv--d~~spdyl~VIdv~p~s~~y~ev~~---------------~~~a~~~~~g   74 (136)
                      .|||||||++||+ +|+|+++||+|+++  +.++||||+|||++|.|+||+||+|               || +|++|+|
T Consensus         9 ~~~~y~sp~~a~~-~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn-~css~~~   86 (462)
T 2ece_A            9 DPTFYPSPKMAMK-APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWN-ACSSALC   86 (462)
T ss_dssp             CTTCCSSHHHHHT-SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEES-CCGGGGS
T ss_pred             CCCccCChHHHhc-CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchh-hhhhhcc
Confidence            4999999999999 99999999999998  6789999999999999999999954               66 8999998


Q ss_pred             cccCC--CCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEE
Q psy10678         75 DILIS--LDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQI  112 (136)
Q Consensus        75 D~l~s--~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v  112 (136)
                      +. .+  ++|||||+||++|++||+||+ +||++|+|+++|
T Consensus        87 ~~-~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i  126 (462)
T 2ece_A           87 PN-GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI  126 (462)
T ss_dssp             TT-CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE
T ss_pred             cc-cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeee
Confidence            84 57  999999999999999999999 899999994444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.78  E-value=1.7e-08  Score=88.63  Aligned_cols=48  Identities=54%  Similarity=0.937  Sum_probs=45.4

Q ss_pred             CccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeeccee
Q psy10678         71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI  118 (136)
Q Consensus        71 ~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~  118 (136)
                      +...|+.+|+|.||||++||.++.|.||||+|+.+|+++++|++||.+
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~  368 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF  368 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee
Confidence            456889999999999999999999999999999999999999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.63  E-value=0.063  Score=45.61  Aligned_cols=83  Identities=10%  Similarity=0.038  Sum_probs=56.2

Q ss_pred             CCCCceeEEEEecCC----CCCCCeEEEEeeCCCCCcccccccccccCC--------CccccccCCCCCCeEEEccCC-C
Q psy10678         26 GPRETLLYVICIQPN----GQHPDYLAVIDVDPQSKTYQQVRNTLRAGL--------AMVTDILISLDDRYLYTSNWM-H   92 (136)
Q Consensus        26 ap~Ek~dYvatldvd----~~spdyl~VIdv~p~s~~y~ev~~~~~a~~--------~~~gD~l~s~drr~L~vp~l~-s   92 (136)
                      .|..+..||+.-...    .+.-+.+.|||....     ++++++. ..        .....+.+++|.|+||+.++. +
T Consensus       126 SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-----~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          126 AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-----LPIADIE-LPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-----CEEEEEE-ETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECCCC-----cEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence            578888898875322    123467888876553     4555442 11        112344478899999999986 8


Q ss_pred             CcEEEEeCCCCCCCeEeEEEeecce
Q psy10678         93 GDIRQYDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        93 grIyv~DvsDP~~PkL~~~v~~gg~  117 (136)
                      +.|.++|+..   =+++++|.+||.
T Consensus       200 ~~VsVID~~t---~kvv~~I~v~g~  221 (426)
T 3c75_H          200 PAVGVVDLEG---KTFDRMLDVPDC  221 (426)
T ss_dssp             CEEEEEETTT---TEEEEEEECCSE
T ss_pred             CeEEEEECCC---CeEEEEEEcCCc
Confidence            8999999832   278899999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.54  E-value=0.072  Score=45.28  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=53.4

Q ss_pred             CCCceeEEEEecCCCC----CCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCC-eEEEccCCCCcEEEEeCC
Q psy10678         27 PRETLLYVICIQPNGQ----HPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDR-YLYTSNWMHGDIRQYDIR  101 (136)
Q Consensus        27 p~Ek~dYvatldvd~~----spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr-~L~vp~l~sgrIyv~Dvs  101 (136)
                      +..+..||+.-+-+..    ..+-++|||..-.     +++.++. .....-.+.++.|++ +||+.+|.++.|.|||+.
T Consensus       328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-----kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-----ERINKIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-----CEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEecccccccccCCCCEEEEEECCCC-----eEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            4456678887543222    1357999997664     6766653 111123344788888 999999999999999983


Q ss_pred             CCCCCeEeEEE-eec
Q psy10678        102 DTAHPVLVGQI-FLG  115 (136)
Q Consensus       102 DP~~PkL~~~v-~~g  115 (136)
                      .   -+++++| .+|
T Consensus       402 t---~kvv~tI~~vG  413 (426)
T 3c75_H          402 T---GEELRSVDQLG  413 (426)
T ss_dssp             T---CCEEEEECCCS
T ss_pred             C---CCEEEEecCCC
Confidence            3   2677887 455

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=93.88  E-value=0.26  Score=39.90  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             CCCCceeEEEEecCCC----CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCC-eEEEccCCCCcEEEEeC
Q psy10678         26 GPRETLLYVICIQPNG----QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDR-YLYTSNWMHGDIRQYDI  100 (136)
Q Consensus        26 ap~Ek~dYvatldvd~----~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr-~L~vp~l~sgrIyv~Dv  100 (136)
                      .+..+..||+.-+-+.    ...+-+.|||..-.     +++..+. .....-.+.++.|.+ .||+.++.++.|.+||+
T Consensus       275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-----~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-----QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             CCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-----EEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            3455667777653221    12356889987553     6666552 111122333678877 89999999999999998


Q ss_pred             CCCCCCeEeEE-Eeecc
Q psy10678        101 RDTAHPVLVGQ-IFLGG  116 (136)
Q Consensus       101 sDP~~PkL~~~-v~~gg  116 (136)
                      ..   =+++++ +.+|.
T Consensus       349 ~t---~~vv~~i~~vG~  362 (373)
T 2mad_H          349 GA---GDQDQSTVELGS  362 (373)
T ss_pred             CC---CCEEeeecCCCC
Confidence            32   256677 44553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=93.16  E-value=0.25  Score=41.70  Aligned_cols=82  Identities=13%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             CCCceeEEEEecCC--C--CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCC-eEEEccCCCCcEEEEeCC
Q psy10678         27 PRETLLYVICIQPN--G--QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDR-YLYTSNWMHGDIRQYDIR  101 (136)
Q Consensus        27 p~Ek~dYvatldvd--~--~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr-~L~vp~l~sgrIyv~Dvs  101 (136)
                      +..+..||++-+-+  .  +...-+.|||..-.     +++..+.. -.-.-.+.++.|.+ +||+.++.++.|.+||+.
T Consensus       289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-----kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-----ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-----CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEeccccccccCCCCCEEEEEECCCC-----eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            45677999987432  1  12367889998764     67665521 11111233677765 899999999999999993


Q ss_pred             CCCCCeEeEEEeecce
Q psy10678        102 DTAHPVLVGQIFLGGK  117 (136)
Q Consensus       102 DP~~PkL~~~v~~gg~  117 (136)
                      .   =|++++|..+|.
T Consensus       363 t---~k~~~~i~~~~~  375 (386)
T 3sjl_D          363 S---GEELRSVNQLGH  375 (386)
T ss_dssp             T---CCEEEEECCCCS
T ss_pred             C---CcEEEEecCCCC
Confidence            2   268888888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=92.97  E-value=0.37  Score=39.00  Aligned_cols=92  Identities=10%  Similarity=-0.014  Sum_probs=58.9

Q ss_pred             CCCCCCHHHHHhcCCCCceeEEEEecC----CCCCCCeEEEEeeCCCCCcccccccccccCC--------CccccccCCC
Q psy10678         13 GPGYRTPVDAMRYGPRETLLYVICIQP----NGQHPDYLAVIDVDPQSKTYQQVRNTLRAGL--------AMVTDILISL   80 (136)
Q Consensus        13 ~~~y~sp~~Am~~ap~Ek~dYvatldv----d~~spdyl~VIdv~p~s~~y~ev~~~~~a~~--------~~~gD~l~s~   80 (136)
                      ++++. |..|+  +|-.+..|++.-..    ..+.-+.+.+||..-.     +++++.. ..        ....++.+|+
T Consensus        64 ~~g~~-p~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-----~~~~~i~-~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           64 NGGFL-PNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-----LPIADIE-LPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             cCCCC-CCeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCC-----cEEEEEE-CCCccccccCCCccceEECC
Confidence            44554 33333  58888999986432    1234577888888532     4444442 11        1123445789


Q ss_pred             CCCeEEEccCC-CCcEEEEeCCCCCCCeEeEE-Eeecce
Q psy10678         81 DDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQ-IFLGGK  117 (136)
Q Consensus        81 drr~L~vp~l~-sgrIyv~DvsDP~~PkL~~~-v~~gg~  117 (136)
                      |.|+||+.+.. ++.|.+|| .. .  +++++ |.++|.
T Consensus       135 DG~~l~v~n~~~~~~v~viD-~t-~--~~~~~~i~~~~~  169 (373)
T 2mad_H          135 NNADLLFFQFAAGPAVGLVV-QG-G--SSDDQLLSSPTC  169 (373)
T ss_pred             CCCEEEEEecCCCCeEEEEE-CC-C--CEEeEEcCCCce
Confidence            99999999986 68899999 43 3  66788 888764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=92.44  E-value=0.81  Score=36.15  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             CCCceeEEEEe-cCC----CCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCC
Q psy10678         27 PRETLLYVICI-QPN----GQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIR  101 (136)
Q Consensus        27 p~Ek~dYvatl-dvd----~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dvs  101 (136)
                      |..+..||+.- +-.    .+...-+.|||..-     .+++..+. .-. .-.+.++++.++||+.++  +.|++||..
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-----~~~v~~i~-~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~  333 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-----KQRVARIP-GRD-ALSMTIDQQRNLMLTLDG--GNVNVYDIS  333 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-----TEEEEEEE-CTT-CCEEEEETTTTEEEEECS--SCEEEEECS
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCC-----CcEEEEEe-cCC-eeEEEECCCCCEEEEeCC--CeEEEEECC
Confidence            34456676543 211    11234688888654     36766653 222 444457889999999997  999999984


Q ss_pred             CCCCCeEeEEE-eec
Q psy10678        102 DTAHPVLVGQI-FLG  115 (136)
Q Consensus       102 DP~~PkL~~~v-~~g  115 (136)
                      . .+++++++| -+|
T Consensus       334 t-~~l~~~~~i~~~G  347 (361)
T 2oiz_A          334 Q-PEPKLLRTIEGAA  347 (361)
T ss_dssp             S-SSCEEEEEETTSC
T ss_pred             C-CcceeeEEeccCC
Confidence            3 556888887 344

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=92.18  E-value=0.28  Score=41.39  Aligned_cols=82  Identities=10%  Similarity=0.044  Sum_probs=53.8

Q ss_pred             CCCCceeEEEEecC----CCCCCCeEEEEeeCCCCCcccccccccccCCC--------ccccccCCCCCCeEEEccCC-C
Q psy10678         26 GPRETLLYVICIQP----NGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLA--------MVTDILISLDDRYLYTSNWM-H   92 (136)
Q Consensus        26 ap~Ek~dYvatldv----d~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~--------~~gD~l~s~drr~L~vp~l~-s   92 (136)
                      .|-.+..||+.-.-    .++..+.+.|||..-.     +++..+. ...        ....+.+++|.|+||+.|.. +
T Consensus        86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~-----~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-----LPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-----CEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCCCCEEEEEcccccccccCCCCCEEEEEECCCC-----eEEEEEE-CCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            58888899985321    1123466777776543     4544432 110        11223478899999999975 8


Q ss_pred             CcEEEEeC-CCCCCCeEeEEEeecce
Q psy10678         93 GDIRQYDI-RDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        93 grIyv~Dv-sDP~~PkL~~~v~~gg~  117 (136)
                      +.|.++|+ +.    +++++|.++|.
T Consensus       160 ~~VsVID~~t~----~vv~tI~v~g~  181 (386)
T 3sjl_D          160 PAVGVVDLEGK----AFKRMLDVPDC  181 (386)
T ss_dssp             CEEEEEETTTT----EEEEEEECCSE
T ss_pred             CeEEEEECCCC----cEEEEEECCCc
Confidence            99999999 33    78999988764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=92.05  E-value=1.2  Score=34.47  Aligned_cols=85  Identities=8%  Similarity=0.045  Sum_probs=49.0

Q ss_pred             CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCccccccc---ccccCCCccccccCCC---CCCeEEEccCCCCcEEEEe
Q psy10678         26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRN---TLRAGLAMVTDILISL---DDRYLYTSNWMHGDIRQYD   99 (136)
Q Consensus        26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~---~~~a~~~~~gD~l~s~---drr~L~vp~l~sgrIyv~D   99 (136)
                      .|..+..|++.-+-+.+.+..++|++++..    +++..   ...........+-+++   +.++|++.+..++.|.+||
T Consensus       263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~----g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          263 TFSGKYMFASSRANKFELQGYIAGFKLRDC----GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTT----SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCCeEEEEEECCC----CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            566777776665555455668889988742    23321   1100000111222456   7899999999999999999


Q ss_pred             CCCCCCCeEeEEEeec
Q psy10678        100 IRDTAHPVLVGQIFLG  115 (136)
Q Consensus       100 vsDP~~PkL~~~v~~g  115 (136)
                      +. +..-+.++++.++
T Consensus       339 ~~-~~~l~~~~~~~~~  353 (365)
T 1jof_A          339 WK-DEFLHRVARVRIP  353 (365)
T ss_dssp             EE-TTEEEEEEEEECC
T ss_pred             Ec-hhhCceeeEEEcC
Confidence            82 2233333444443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=91.98  E-value=0.14  Score=44.56  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CCCCceeEEEE-ecCCCCCCCeEEEEeeCCC-----CCccccc-cc-cccc--C--CCccccccCCCCCCeEEEccC---
Q psy10678         26 GPRETLLYVIC-IQPNGQHPDYLAVIDVDPQ-----SKTYQQV-RN-TLRA--G--LAMVTDILISLDDRYLYTSNW---   90 (136)
Q Consensus        26 ap~Ek~dYvat-ldvd~~spdyl~VIdv~p~-----s~~y~ev-~~-~~~a--~--~~~~gD~l~s~drr~L~vp~l---   90 (136)
                      .|..+.+||.+ +.+|.+-.+-.+|||....     ...|..| +. |..-  .  -+.+..  ++++.++||+++|   
T Consensus       448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~G~~~~~s~~~~~  525 (567)
T 1qks_A          448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE--FNKDGTEVWFSVWNGK  525 (567)
T ss_dssp             CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE--ECTTSSEEEEEEECCT
T ss_pred             CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee--ECCCCCEEEEEeecCC
Confidence            56667777655 4444333458999999876     4433333 23 3310  0  011222  6889999999999   


Q ss_pred             -CCCcEEEEeCCCCCCCeEeEEE
Q psy10678         91 -MHGDIRQYDIRDTAHPVLVGQI  112 (136)
Q Consensus        91 -~sgrIyv~DvsDP~~PkL~~~v  112 (136)
                       .++.|.|||...   =+|.++|
T Consensus       526 ~~~~~i~v~D~~t---~~~~~~i  545 (567)
T 1qks_A          526 DQESALVVVDDKT---LELKHVI  545 (567)
T ss_dssp             TSCCEEEEEETTT---TEEEEEE
T ss_pred             CCCCcEEEEECCC---ceEEEEe
Confidence             489999999832   2674444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=91.96  E-value=0.32  Score=38.49  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             CCCCceeEEEEecCC----CCCCCeEEEEeeCCCCCcccccccccccC------CCccccccCCCCCCeEEEccCC-CCc
Q psy10678         26 GPRETLLYVICIQPN----GQHPDYLAVIDVDPQSKTYQQVRNTLRAG------LAMVTDILISLDDRYLYTSNWM-HGD   94 (136)
Q Consensus        26 ap~Ek~dYvatldvd----~~spdyl~VIdv~p~s~~y~ev~~~~~a~------~~~~gD~l~s~drr~L~vp~l~-sgr   94 (136)
                      .|..+.+|++.-...    .+.-+.+.++|...     .++++++...      -.....+.++++.|+||+.+.. ++.
T Consensus        58 spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-----~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~  132 (361)
T 2oiz_A           58 SNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-----LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS  132 (361)
T ss_dssp             CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-----CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred             CCCCCEEEEEEecccccccCCCCCEEEEEECcC-----CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence            577888888864221    12335677887542     2444443200      0112344478899999999986 789


Q ss_pred             EEEEeCCCCCCCeEeEE-Eeecce
Q psy10678         95 IRQYDIRDTAHPVLVGQ-IFLGGK  117 (136)
Q Consensus        95 Iyv~DvsDP~~PkL~~~-v~~gg~  117 (136)
                      |.+||+..-   +++++ |.++|.
T Consensus       133 v~v~d~~~~---~~~~~~i~~~~~  153 (361)
T 2oiz_A          133 IGIVDVAKG---DYVEDVTAAAGC  153 (361)
T ss_dssp             EEEEETTTT---EEEEEEGGGTTE
T ss_pred             EEEEECCCC---cEEEEEecCCCc
Confidence            999999421   67788 777664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=91.86  E-value=0.15  Score=43.32  Aligned_cols=74  Identities=20%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             CCCCceeEEEE-ecCCCCCCCeEEEEeeCCCCCccccc-ccccccCCCcccc----ccCCCCCCeEEEccC----CCCcE
Q psy10678         26 GPRETLLYVIC-IQPNGQHPDYLAVIDVDPQSKTYQQV-RNTLRAGLAMVTD----ILISLDDRYLYTSNW----MHGDI   95 (136)
Q Consensus        26 ap~Ek~dYvat-ldvd~~spdyl~VIdv~p~s~~y~ev-~~~~~a~~~~~gD----~l~s~drr~L~vp~l----~sgrI   95 (136)
                      .|..+..|+.+ +..|.+.-+-.+|+|+......|..| ++.+ +..+-.+.    .-++++.++||+++|    .++.|
T Consensus       429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i  507 (543)
T 1nir_A          429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL  507 (543)
T ss_dssp             CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH-HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred             CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhh-cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence            45555555543 23222234589999999887776665 4422 01111111    116889999999999    36999


Q ss_pred             EEEeC
Q psy10678         96 RQYDI  100 (136)
Q Consensus        96 yv~Dv  100 (136)
                      .+||.
T Consensus       508 ~v~D~  512 (543)
T 1nir_A          508 VVVDD  512 (543)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=90.85  E-value=2.5  Score=30.78  Aligned_cols=69  Identities=13%  Similarity=0.193  Sum_probs=43.3

Q ss_pred             CeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeec
Q psy10678         45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLG  115 (136)
Q Consensus        45 dyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~g  115 (136)
                      ..+.+.|......+... +..... ......+-.+++.++||+.+..++.|.+|++ .+..+.+....+.+|
T Consensus       253 ~~i~v~d~~~~~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g  322 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSK-EGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG  322 (343)
T ss_dssp             TEEEEEEECTTSCCEEE-EEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS
T ss_pred             CEEEEEEEcCCCCceEE-eeeecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC
Confidence            46777777754333222 222211 1113444467889999999999999999987 444556666776664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=89.83  E-value=3.5  Score=29.97  Aligned_cols=42  Identities=21%  Similarity=0.188  Sum_probs=32.3

Q ss_pred             ccCCCCCCeEEEccCCCCcEEEEeCC-CCCCCeEeEEEeecce
Q psy10678         76 ILISLDDRYLYTSNWMHGDIRQYDIR-DTAHPVLVGQIFLGGK  117 (136)
Q Consensus        76 ~l~s~drr~L~vp~l~sgrIyv~Dvs-DP~~PkL~~~v~~gg~  117 (136)
                      +..+++.++||+.+...+.|++||+. +....+....+..++.
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  278 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ  278 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc
Confidence            44678899999999999999999994 3555677666666553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=89.63  E-value=0.35  Score=39.98  Aligned_cols=80  Identities=13%  Similarity=-0.050  Sum_probs=54.5

Q ss_pred             CCCCceeEEEEecCC----CCCCCeEEEEeeCCCCCcccccccccccCC--------CccccccCCCCCCeEEEccCC-C
Q psy10678         26 GPRETLLYVICIQPN----GQHPDYLAVIDVDPQSKTYQQVRNTLRAGL--------AMVTDILISLDDRYLYTSNWM-H   92 (136)
Q Consensus        26 ap~Ek~dYvatldvd----~~spdyl~VIdv~p~s~~y~ev~~~~~a~~--------~~~gD~l~s~drr~L~vp~l~-s   92 (136)
                      +|-.+..||+.-+..    .+.-+.+.|||....     ++++++. ..        .....+-+|+|.|+||+.++. +
T Consensus        73 spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-----~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           73 GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-----LPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-----CEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             CCCCCEEEEEcccccccccCCCCCEEEEEECCCC-----CEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            677888888875432    244688899988774     5666652 11        111233378899999999997 6


Q ss_pred             CcEEE--EeCCCCCCCeEeEEEeecce
Q psy10678         93 GDIRQ--YDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        93 grIyv--~DvsDP~~PkL~~~v~~gg~  117 (136)
                      +.|.+  +|+..      +++|-+||.
T Consensus       147 ~~v~V~~iD~~t------v~~i~v~~~  167 (368)
T 1mda_H          147 AAAGLSVPGASD------DQLTKSASC  167 (368)
T ss_dssp             CEEEEEETTTEE------EEEEECSSC
T ss_pred             CeEEEEEEchhh------ceEEECCCc
Confidence            77888  88833      578877763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=89.11  E-value=1.6  Score=32.77  Aligned_cols=41  Identities=29%  Similarity=0.433  Sum_probs=31.9

Q ss_pred             ccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678         76 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  116 (136)
Q Consensus        76 ~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg  116 (136)
                      +.++++.++||+.+..++.|++||+......+...++..+|
T Consensus       245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~  285 (347)
T 3hfq_A          245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG  285 (347)
T ss_dssp             EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence            44788999999999999999999995334566777776643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=88.25  E-value=1.4  Score=36.38  Aligned_cols=59  Identities=7%  Similarity=-0.146  Sum_probs=43.0

Q ss_pred             eEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccC---------CCCcEEEEeC-CCCCCCeEeEEEeec
Q psy10678         46 YLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNW---------MHGDIRQYDI-RDTAHPVLVGQIFLG  115 (136)
Q Consensus        46 yl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l---------~sgrIyv~Dv-sDP~~PkL~~~v~~g  115 (136)
                      -..|||.+-.     ++++.+..... . -+.+|+|.++||+.+.         +++.|.+||+ +.    +++++|.+|
T Consensus        47 ~vsvID~~t~-----~v~~~i~vG~~-P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~----~vv~~I~v~  115 (368)
T 1mda_H           47 ENWVSCAGCG-----VTLGHSLGAFL-S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF----LPIADIELP  115 (368)
T ss_dssp             EEEEEETTTT-----EEEEEEEECTT-C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC----CEEEEEEET
T ss_pred             eEEEEECCCC-----eEEEEEeCCCC-C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----CEEEEEECC
Confidence            6778886653     77776632211 1 3668999999999984         6788999988 43    678999988

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=88.25  E-value=6.1  Score=29.01  Aligned_cols=38  Identities=11%  Similarity=0.257  Sum_probs=28.9

Q ss_pred             CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeec
Q psy10678         78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  115 (136)
Q Consensus        78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~g  115 (136)
                      .+++.++||+.+..++.|++||+.+-+..+...++..|
T Consensus       183 ~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~  220 (331)
T 3u4y_A          183 FTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN  220 (331)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence            67899999999999999999999544433435555544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=85.62  E-value=4.2  Score=30.68  Aligned_cols=40  Identities=28%  Similarity=0.469  Sum_probs=31.1

Q ss_pred             cccCCCCCCeEEEccCC-CCcEEEEeCC-CCCCCeEeEEEee
Q psy10678         75 DILISLDDRYLYTSNWM-HGDIRQYDIR-DTAHPVLVGQIFL  114 (136)
Q Consensus        75 D~l~s~drr~L~vp~l~-sgrIyv~Dvs-DP~~PkL~~~v~~  114 (136)
                      ++.++++.++||+.+.. ++.|.+||+. +..+.+....+..
T Consensus       263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~  304 (361)
T 3scy_A          263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT  304 (361)
T ss_dssp             EEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             cEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence            45578899999999999 9999999993 4456666666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=85.26  E-value=6.1  Score=28.86  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=28.4

Q ss_pred             ccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678         76 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        76 ~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~  117 (136)
                      +-.+++.++||+. -.++.|++||+..   -++.+++.++|.
T Consensus       300 ~~~s~dg~~l~~~-~~~~~v~v~d~~~---~~~~~~~~~~~~  337 (349)
T 1jmx_B          300 VAFDKKGDKLYLG-GTFNDLAVFNPDT---LEKVKNIKLPGG  337 (349)
T ss_dssp             EEECSSSSCEEEE-SBSSEEEEEETTT---TEEEEEEECSSS
T ss_pred             eEECCCCCEEEEe-cCCCeEEEEeccc---cceeeeeecCCC
Confidence            3367788999995 4569999999832   367888888743

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=84.01  E-value=5.6  Score=28.81  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=28.0

Q ss_pred             ccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678         76 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  116 (136)
Q Consensus        76 ~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg  116 (136)
                      +..+++.++||+.+. ++.|++||+..   -++.+++.+|+
T Consensus       285 ~~~s~dg~~l~~~~~-~~~i~v~d~~~---~~~~~~~~~~~  321 (337)
T 1pby_B          285 VNVSTDGSTVWLGGA-LGDLAAYDAET---LEKKGQVDLPG  321 (337)
T ss_dssp             EEECTTSCEEEEESB-SSEEEEEETTT---CCEEEEEECGG
T ss_pred             EEECCCCCEEEEEcC-CCcEEEEECcC---CcEEEEEEcCC
Confidence            336778899999855 89999999843   25678887774

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=83.99  E-value=8.9  Score=28.11  Aligned_cols=37  Identities=11%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678         78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~  117 (136)
                      .+++.++||+.+..++.|++||+..   -++..++..|+.
T Consensus       279 ~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~  315 (353)
T 3vgz_A          279 FNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTH  315 (353)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCSE
T ss_pred             ECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCCC
Confidence            5778899999999999999999843   366777776653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=82.50  E-value=3.3  Score=34.96  Aligned_cols=78  Identities=14%  Similarity=0.093  Sum_probs=46.9

Q ss_pred             CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCC----CCCeEEEccCCCCcEEEEeCC
Q psy10678         26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISL----DDRYLYTSNWMHGDIRQYDIR  101 (136)
Q Consensus        26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~----drr~L~vp~l~sgrIyv~Dvs  101 (136)
                      .|..+..|++..|      +.+.++|.+...   .+++..+.. -...-.+-+|+    +.++||+.+..++.|.+||..
T Consensus       187 spdg~~l~v~~~d------~~V~v~D~~~~t---~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          187 SASGRYLLVIGRD------ARIDMIDLWAKE---PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             CTTSCEEEEEETT------SEEEEEETTSSS---CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             CCCCCEEEEECCC------CeEEEEECcCCC---CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            4666666666432      668888875221   344443321 11112223678    999999999999999999983


Q ss_pred             CCCCCeEeEEEeecc
Q psy10678        102 DTAHPVLVGQIFLGG  116 (136)
Q Consensus       102 DP~~PkL~~~v~~gg  116 (136)
                      .   =++.++|.++|
T Consensus       257 t---~~~~~~i~~~g  268 (543)
T 1nir_A          257 T---LEPKQIVSTRG  268 (543)
T ss_dssp             T---CCEEEEEECCE
T ss_pred             c---cccceeecccC
Confidence            2   23455665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	0.001

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 3/115 (2%)

Query: 1   MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSK-TY 59
           + P        +        D          ++        +   Y+A   +        
Sbjct: 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297

Query: 60  QQVRNTLRAGLAMVTDILIS-LDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQI 112
           Q   +           +      D ++  ++   G +  Y  +D   H V   +I
Sbjct: 298 QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRI 352

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.35
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	95.17
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	94.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.49
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	93.92
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	91.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.99
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	86.12
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	83.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	81.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	81.02
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	80.38
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	80.31

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.35  E-value=0.015  Score=40.06  Aligned_cols=40  Identities=13%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             ccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678         74 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  116 (136)
Q Consensus        74 gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg  116 (136)
                      .++-+|+|.++||+.+..++.|++||+++   -++++++.+|-
T Consensus       247 ~~va~spdg~~l~va~~~~~~i~v~D~~t---~~~~~~~~vg~  286 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTVSVIDTAT---NTITATMAVGK  286 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECSS
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEECCC---CeEEEEEeCCC
Confidence            44557889999999999999999999843   38889998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=95.17  E-value=0.034  Score=38.13  Aligned_cols=71  Identities=23%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             eeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeE
Q psy10678         31 LLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG  110 (136)
Q Consensus        31 ~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~  110 (136)
                      ++||+.     ..-+-+.|+|....     |+++.+. .......+-+|+|.++||+.+..+++|++||+..   .++..
T Consensus         3 ~~yV~~-----~~~~~v~v~D~~t~-----~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---~~~~~   68 (301)
T d1l0qa2           3 FAYIAN-----SESDNISVIDVTSN-----KVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIA   68 (301)
T ss_dssp             EEEEEE-----TTTTEEEEEETTTT-----EEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEE
T ss_pred             EEEEEE-----CCCCEEEEEECCCC-----eEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---Cceee
Confidence            567652     12334788886553     6666552 1122223447889999999999999999999843   24555


Q ss_pred             EEeec
Q psy10678        111 QIFLG  115 (136)
Q Consensus       111 ~v~~g  115 (136)
                      ++..+
T Consensus        69 ~~~~~   73 (301)
T d1l0qa2          69 TVPAG   73 (301)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            55444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.056  Score=37.67  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=36.3

Q ss_pred             CccccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeecce
Q psy10678         71 AMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        71 ~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~  117 (136)
                      ..+.++-+|+|.|+||+.+..++.|++|++ .+-...++.+....+..
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            334455578999999999999999999999 45566677777766654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.73  E-value=0.09  Score=36.40  Aligned_cols=72  Identities=24%  Similarity=0.204  Sum_probs=48.9

Q ss_pred             eEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCC--CccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEe
Q psy10678         32 LYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGL--AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV  109 (136)
Q Consensus        32 dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~--~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~  109 (136)
                      .|+++..    ++.-+.|+|..-.     ++++... ..  ...+.+-+++|.++||+.+-.+++|++||+.   ..+++
T Consensus         9 ~~l~~~~----~~~~v~v~D~~t~-----~~~~t~~-~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~---t~~~~   75 (346)
T d1jmxb_           9 EYMIVTN----YPNNLHVVDVASD-----TVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD---TCKNT   75 (346)
T ss_dssp             EEEEEEE----TTTEEEEEETTTT-----EEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT---TTEEE
T ss_pred             cEEEEEc----CCCEEEEEECCCC-----CEEEEEE-cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc---cCeee
Confidence            5666654    3457889998753     6766542 11  1224555788999999999999999999983   34666


Q ss_pred             EEEeecc
Q psy10678        110 GQIFLGG  116 (136)
Q Consensus       110 ~~v~~gg  116 (136)
                      .++..+.
T Consensus        76 ~~~~~~~   82 (346)
T d1jmxb_          76 FHANLSS   82 (346)
T ss_dssp             EEEESCC
T ss_pred             eeecccc
Confidence            6665543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.49  E-value=0.12  Score=35.65  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             eEEEEecCCCCCCCeEEEEeeCCCCCccccccccccc--CCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEe
Q psy10678         32 LYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRA--GLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV  109 (136)
Q Consensus        32 dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a--~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~  109 (136)
                      +|+++.-    +++-+.|+|....     ++++.+..  .....+.+.+++|.|+||+.+-.++.|++||+..   -++.
T Consensus         2 ~~~vt~~----~d~~v~v~D~~s~-----~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~~   69 (337)
T d1pbyb_           2 DYILAPA----RPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETL   69 (337)
T ss_dssp             EEEEEEE----TTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEE
T ss_pred             eEEEEEc----CCCEEEEEECCCC-----eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---CcEE
Confidence            4666644    4577889988653     66554421  1122345567889999999999999999999943   2455


Q ss_pred             EEEeec
Q psy10678        110 GQIFLG  115 (136)
Q Consensus       110 ~~v~~g  115 (136)
                      .++.+.
T Consensus        70 ~~~~~~   75 (337)
T d1pbyb_          70 GRIDLS   75 (337)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.27  Score=34.03  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=41.7

Q ss_pred             CCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeecc
Q psy10678         44 PDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGG  116 (136)
Q Consensus        44 pdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg  116 (136)
                      .+...+..++...... ++.+... ......++-+|+|.||||+.+-.++.|.+|++ ...-+-+.++++-+|+
T Consensus       251 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~  322 (333)
T d1ri6a_         251 ASLITVFSVSEDGSVL-SKEGFQP-TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQ  322 (333)
T ss_dssp             TTEEEEEEECTTSCCE-EEEEEEE-CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CCeEEEEEEcCCCCEE-EEEEEeC-CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCC
Confidence            3455666666543221 2222211 11222344478999999999999999999988 3323334466776664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.65  E-value=0.16  Score=37.16  Aligned_cols=83  Identities=8%  Similarity=0.038  Sum_probs=52.5

Q ss_pred             CCCCceeEEEEecCCC---CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCC-CeEEEccCCCCcEEEEeCC
Q psy10678         26 GPRETLLYVICIQPNG---QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDD-RYLYTSNWMHGDIRQYDIR  101 (136)
Q Consensus        26 ap~Ek~dYvatldvd~---~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~dr-r~L~vp~l~sgrIyv~Dvs  101 (136)
                      .+..+..|+++.+-+.   .....+.|+|..-.     ++++.+. .......+-.|+|. .+||+.+...+.|++||+.
T Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-----~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-----QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-----CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             cCCCCEEEEEecCCCceeecCCceEEEEECCCC-----cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            3566778888876543   33356778876553     3444331 11112223367775 5799999999999999983


Q ss_pred             CCCCCeEeEEEeecce
Q psy10678        102 DTAHPVLVGQIFLGGK  117 (136)
Q Consensus       102 DP~~PkL~~~v~~gg~  117 (136)
                      .   =|..++|.+|..
T Consensus       346 t---gk~~~~i~~g~~  358 (368)
T d1mdah_         346 S---DQDQSSVELDKG  358 (368)
T ss_dssp             S---CEEEEECCCCSC
T ss_pred             C---CCEEEEEECCCC
Confidence            2   377889988743

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=91.24  E-value=0.66  Score=35.00  Aligned_cols=88  Identities=9%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCccccc-ccccccCCCccccccCCC-CCCeEEEccCCCCcEEEEeCCCC
Q psy10678         26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQV-RNTLRAGLAMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDT  103 (136)
Q Consensus        26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev-~~~~~a~~~~~gD~l~s~-drr~L~vp~l~sgrIyv~DvsDP  103 (136)
                      .|..++.|++.=.-+.....++++..++......... +......-...-.+-+++ +.+|||+.+..++.|.+|++.+.
T Consensus       263 spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            5777888887666566667778888777765433222 111100001112222454 67999999999999999998543


Q ss_pred             CCCeEeEEEee
Q psy10678        104 AHPVLVGQIFL  114 (136)
Q Consensus       104 ~~PkL~~~v~~  114 (136)
                       .-.++..+.+
T Consensus       343 -~l~~~~~~~v  352 (365)
T d1jofa_         343 -FLHRVARVRI  352 (365)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -cCcEEEEEEC
Confidence             2344444444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.99  E-value=1.8  Score=32.41  Aligned_cols=96  Identities=14%  Similarity=0.198  Sum_probs=53.4

Q ss_pred             HHHHHhcCCCCceeEEEEecCCC---------CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEcc
Q psy10678         19 PVDAMRYGPRETLLYVICIQPNG---------QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSN   89 (136)
Q Consensus        19 p~~Am~~ap~Ek~dYvatldvd~---------~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~   89 (136)
                      |.-... .+..+..||++-+-+.         .......++.++......+.+.+......+..--+.++++.||||+++
T Consensus        85 p~~v~~-~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          85 PRANDA-DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             GGGGCT-TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEE-CCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            433333 5666777877643221         112234455555443333333111100112212234788999999999


Q ss_pred             CCCCcEEEEeCCCCCCCeEeEEEeec
Q psy10678         90 WMHGDIRQYDIRDTAHPVLVGQIFLG  115 (136)
Q Consensus        90 l~sgrIyv~DvsDP~~PkL~~~v~~g  115 (136)
                      +..++|++|++.....-...+.+...
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             CCCCEEEEEEccCCCceeeccceeec
Confidence            99999999998655656666666553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=86.12  E-value=0.65  Score=31.78  Aligned_cols=42  Identities=19%  Similarity=0.134  Sum_probs=32.4

Q ss_pred             cccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecceecc
Q psy10678         75 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQS  120 (136)
Q Consensus        75 D~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~  120 (136)
                      ++-+|+|.++||+.++ .+.|++||+   ..-+++++|.+.|.=..
T Consensus       296 ~va~s~DG~~l~v~~~-d~~v~v~D~---~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGT-FNDLAVFNP---DTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             EEEECSSSSCEEEESB-SSEEEEEET---TTTEEEEEEECSSSCCB
T ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEEC---ccCCEEEEEECCCCCcc
Confidence            3447889999999986 589999988   34588999998664333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=83.89  E-value=1.1  Score=34.29  Aligned_cols=62  Identities=26%  Similarity=0.433  Sum_probs=41.0

Q ss_pred             eEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeec
Q psy10678         46 YLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  115 (136)
Q Consensus        46 yl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~g  115 (136)
                      -.+|+|...     ++++..++.. .....+.+|+|-||||+.+ +.+.|++||+. ..+++.+.+|..|
T Consensus        43 ~v~v~D~~t-----~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~-t~~~~~~~~i~~~  104 (432)
T d1qksa2          43 QIALIDGST-----YEIKTVLDTG-YAVHISRLSASGRYLFVIG-RDGKVNMIDLW-MKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEEETTT-----CCEEEEEECS-SCEEEEEECTTSCEEEEEE-TTSEEEEEETT-SSSCCEEEEEECC
T ss_pred             EEEEEECCC-----CcEEEEEeCC-CCeeEEEECCCCCEEEEEc-CCCCEEEEEee-CCCceEEEEEecC
Confidence            467787655     3665555321 1233455899999999987 47899999982 3456666666655

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=81.29  E-value=1.3  Score=30.00  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=27.8

Q ss_pred             CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678         78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~  117 (136)
                      +|+|.++||+.+ ..+.|++||+..   -+.+++|.+-|.
T Consensus       287 ~s~dG~~l~v~~-~~~~i~v~D~~t---~~~v~~i~~~g~  322 (337)
T d1pbyb_         287 VSTDGSTVWLGG-ALGDLAAYDAET---LEKKGQVDLPGN  322 (337)
T ss_dssp             ECTTSCEEEEES-BSSEEEEEETTT---CCEEEEEECGGG
T ss_pred             ECCCCCEEEEEe-CCCcEEEEECCC---CcEEEEEECCCC
Confidence            688999999976 567899999932   367888877443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=81.02  E-value=5.9  Score=27.22  Aligned_cols=78  Identities=13%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             CCCceeEEEEecCCC----CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCC-eEEEccCCCCcEEEEeCC
Q psy10678         27 PRETLLYVICIQPNG----QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDR-YLYTSNWMHGDIRQYDIR  101 (136)
Q Consensus        27 p~Ek~dYvatldvd~----~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr-~L~vp~l~sgrIyv~Dvs  101 (136)
                      +..+..|++.-+-..    ...+.+.++|....     +++..+. .......+-.|+|-+ +||+.+-..+.|++||+.
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~-----~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-----ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-----CEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEeccCCceeecCCCCeEEEEeCCCC-----cEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            445555666554321    22245666665432     3433321 111112233567655 688999999999999984


Q ss_pred             CCCCCeEeEEEe
Q psy10678        102 DTAHPVLVGQIF  113 (136)
Q Consensus       102 DP~~PkL~~~v~  113 (136)
                      .   .+++++|.
T Consensus       332 t---g~~~~~i~  340 (355)
T d2bbkh_         332 S---GEELRSVN  340 (355)
T ss_dssp             T---CCEEEEEC
T ss_pred             C---CCEEEEEe
Confidence            3   36777774

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.38  E-value=3.4  Score=29.64  Aligned_cols=37  Identities=3%  Similarity=-0.228  Sum_probs=30.4

Q ss_pred             CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678         78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK  117 (136)
Q Consensus        78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~  117 (136)
                      +|+|.|+||+.++..+.|++||+..   .++...+.+.+.
T Consensus       131 ~SpDGk~l~va~~~~~~v~~~d~~~---~~~~~~~~~~~~  167 (368)
T d1mdah_         131 NCASSACLLFFLFGSSAAAGLSVPG---ASDDQLTKSASC  167 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETT---TEEEEEEECSSC
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCC---CcEeEEeeccCc
Confidence            7889999999999999999999843   467777766653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=80.31  E-value=0.77  Score=35.36  Aligned_cols=41  Identities=17%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeeccee
Q psy10678         78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI  118 (136)
Q Consensus        78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~  118 (136)
                      .++|.++|||+....++|++|+...+.+=++...+.++|..
T Consensus       213 ~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~p  253 (340)
T d1v04a_         213 ISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV  253 (340)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCC
Confidence            67899999999999999999999654544555666677653