Psyllid ID: psy10684
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | 2.2.26 [Sep-21-2011] | |||||||
| Q24368 | 1027 | Chromatin-remodeling comp | yes | N/A | 0.583 | 0.163 | 0.796 | 2e-84 | |
| O60264 | 1052 | SWI/SNF-related matrix-as | no | N/A | 0.614 | 0.168 | 0.757 | 1e-77 | |
| Q91ZW3 | 1051 | SWI/SNF-related matrix-as | yes | N/A | 0.614 | 0.168 | 0.757 | 2e-77 | |
| Q6PGB8 | 1046 | Probable global transcrip | no | N/A | 0.614 | 0.169 | 0.734 | 4e-76 | |
| P28370 | 1054 | Probable global transcrip | yes | N/A | 0.614 | 0.167 | 0.719 | 1e-75 | |
| P41877 | 1009 | Chromatin-remodeling comp | yes | N/A | 0.614 | 0.175 | 0.717 | 3e-74 | |
| Q08773 | 1120 | ISWI chromatin-remodeling | yes | N/A | 0.611 | 0.157 | 0.679 | 5e-70 | |
| P38144 | 1129 | ISWI chromatin-remodeling | no | N/A | 0.614 | 0.156 | 0.681 | 2e-63 | |
| Q7G8Y3 | 1107 | Probable chromatin-remode | yes | N/A | 0.607 | 0.158 | 0.683 | 3e-61 | |
| Q8RWY3 | 1055 | Putative chromatin-remode | no | N/A | 0.607 | 0.165 | 0.649 | 1e-58 |
| >sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 312 bits (799), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 141/177 (79%), Positives = 159/177 (89%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VL+KDIDVVNGAGK+EKMRLQNILMQLRKC+NHPYLFDGAEPGPPYTTD HLV+NSGKM
Sbjct: 375 VLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTHLVYNSGKMA 434
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ Q SRVLIFSQMTRMLDILEDYC+WR + YCRLDGQT HEDR RQI +FN
Sbjct: 435 ILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFN 494
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
M+ S F+FMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 495 MDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVR 551
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Energy-transducing component of the chromatin-remodeling complexes NURF (nucleosome-remodeling factor), ACF (ATP-utilizing chromatin assembly and remodeling factor), and CHRAC (chromatin accessibility complex). NURF catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin. It is required for homeotic gene expression, proper larval blood cell development, normal male X chromosome morphology, ecdysteroid signaling and metamorphosis. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 153/177 (86%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 427 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 486
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 487 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 546
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I + +++
Sbjct: 547 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
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Helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity. Complexes containing SMARCA5 are capable of forming ordered nucleosome arrays on chromatin; this may require intact histone H4 tails. Also required for replication of pericentric heterochromatin in S-phase specifically in conjunction with BAZ1A. Probably plays a role in repression of polI dependent transcription of the rDNA locus, through the recruitment of the SIN3/HDAC1 corepressor complex to the rDNA promoter. Essential component of the WICH complex, a chromatin remodeling complex that mobilizes nucleosomes and reconfigures irregular chromatin to a regular nucleosomal array structure. The WICH complex regulates the transcription of various genes, has a role in RNA polymerase I and RNA polymerase III transcription, mediates the histone H2AX phosphorylation at 'Tyr-142', and is involved in the maintenance of chromatin structures during DNA replication processes. Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 153/177 (86%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 426 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 485
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 486 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 545
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I + +++
Sbjct: 546 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 602
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Helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity. Complexes containing SMARCA5 are capable of forming ordered nucleosome arrays on chromatin; this may require intact histone H4 tails. Also required for replication of pericentric heterochromatin in S-phase specifically in conjunction with BAZ1A. Probably plays a role in repression of polI dependent transcription of the rDNA locus, through the recruitment of the SIN3/HDAC1 corepressor complex to the rDNA promoter. Essential component of the WICH complex, a chromatin remodeling complex that mobilizes nucleosomes and reconfigures irregular chromatin to a regular nucleosomal array structure. The WICH complex regulates the transcription of various genes, has a role in RNA polymerase I and RNA polymerase III transcription, mediates the histone H2AX phosphorylation at 'Tyr-142', and is involved in the maintenance of chromatin structures during DNA replication processes. Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 130/177 (73%), Positives = 152/177 (85%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDIDV+N +GK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTDEH+V NSGKMV
Sbjct: 434 ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVGNSGKMV 493
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
LDKLL ++K Q SRVLIFSQMTR+LDILEDYC WRG++Y RLDGQT HE+R+ I+ FN
Sbjct: 494 ALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFN 553
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S FIFMLSTRAGGLGINLA+ADVV+LYDSDWNPQ+DLQAM R +I ++ ++
Sbjct: 554 APNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 610
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Energy-transducing component of the NURF (nucleosome-remodeling factor) and CERF (CECR2-containing-remodeling factor) complexes, which facilitate the perturbation of chromatin structure in an ATP-dependent manner. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 155/189 (82%), Gaps = 12/189 (6%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDIDV+N +GK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTDEH+V NSGKMV
Sbjct: 430 ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMV 489
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDR-------- 113
VLDKLL KLK Q SRVLIFSQMTR+LDILEDYC WRG++YCRLDGQT HE+R
Sbjct: 490 VLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVE 549
Query: 114 ---QRQ-INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREA 169
QR+ I FN S FIFMLSTRAGGLGINLA+ADVV+LYDSDWNPQ+DLQAM R
Sbjct: 550 FLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAH 609
Query: 170 KILRRGSIK 178
+I ++ ++
Sbjct: 610 RIGQKKPVR 618
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Energy-transducing component of NURF (nucleosome-remodeling factor) and CERF (CECR2-containing-remodeling factor) complexes. Both complexes facilitate the perturbation of chromatin structure in an ATP-dependent manner. Potentiates neurite outgrowth. May be involved in brain development by regulating En-1 and En-2 expression. May be involved in the development of luteal cells. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 127/177 (71%), Positives = 147/177 (83%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID++NGAGK+EK RL NILM LRKC NHPYLFDGAEPGPP+TTD+HLV NSGKMV
Sbjct: 379 VLMKDIDIINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSGKMV 438
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLL K K Q SRVLIFSQ +RMLD+LED+C+WR ++YCRLDG T HEDR I +N
Sbjct: 439 VLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYN 498
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S FIFML+TRAGGLGINLATADVV++YDSDWNPQ DLQAM R +I ++ ++
Sbjct: 499 APDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVR 555
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Energy-transducing component of a NURF-like (nucleosome-remodeling factor-like) complex, which would catalyze ATP-dependent nucleosome sliding and facilitate transcription of chromatin (Probable). Involved in vulval cell fates. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 149/178 (83%), Gaps = 2/178 (1%)
Query: 2 VLMKDIDVVNGA-GKLE-KMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGK 59
+L KDID VNGA GK E K RL NI+MQLRKC NHPYLF+GAEPGPPYTTDEHL+FNSGK
Sbjct: 432 LLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLIFNSGK 491
Query: 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQIND 119
M++LDKLL +LK + SRVLIFSQM+R+LDILEDYCY+R F+YCR+DG T+HE+R I++
Sbjct: 492 MIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDE 551
Query: 120 FNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177
+N S+ F+F+L+TRAGGLGINL TAD V+L+DSDWNPQ DLQAM R +I ++ +
Sbjct: 552 YNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQV 609
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Catalytic component of the ISW2 complex, which acts in remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. THe ISW2 complex is involved in coordinating transcriptional repression and in inheritance of telomeric silencing. It is involved in repression of MAT a-specific genes, INO1, and early meiotic genes during mitotic growth dependent upon transcription factor UME6 and in a parallel pathway to the RPD3-SIN3 histone deacetylase complex. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 147/179 (82%), Gaps = 2/179 (1%)
Query: 2 VLMKDIDVVNGA--GKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGK 59
+L KD+D VNG+ K K RL NI+MQLRKC NHPYLFDGAEPGPPYTTDEHLV+N+ K
Sbjct: 444 ILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNAAK 503
Query: 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQIND 119
+ VLDKLL KLK + SRVLIFSQM+R+LDILEDYCY+R ++YCR+DG TAHEDR + I+D
Sbjct: 504 LQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDD 563
Query: 120 FNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
+N S F+F+L+TRAGGLGINL +ADVVVLYDSDWNPQ DLQAM R +I ++ +K
Sbjct: 564 YNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVK 622
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Catalytic component of ISW1-type complexes, which act by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. They are involved in coordinating transcriptional repression, activation and elongation phases. The ISW1A complex represses gene expression at initiation through specific positioning of a promoter proximal dinucleosome. The ISW1B complex acts within coding regions to control the amount of RNA polymerase II released into productive elongation and to coordinate elongation with termination and pre-mRNA processing. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/177 (68%), Positives = 143/177 (80%), Gaps = 2/177 (1%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+L KD++V+N G E+ RL NI MQLRKC NHPYLF GAEPGPPYTT EHLV N+GKMV
Sbjct: 478 LLQKDLEVINAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENAGKMV 535
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKLK ++SRVLIFSQMTR+LDILEDY +RG++YCR+DG T EDR I FN
Sbjct: 536 LLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFN 595
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ F+F+LSTRAGGLGINLATADVVVLYDSDWNPQ DLQA R +I ++ ++
Sbjct: 596 KPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQ 652
|
Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/177 (64%), Positives = 142/177 (80%), Gaps = 2/177 (1%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+L KD++ VN G E+ RL NI MQLRKC NHPYLF GAEPGPPYTT +HL+ N+GKMV
Sbjct: 436 LLQKDLEAVNAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMV 493
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKLK ++SRVLIFSQMTR+LDILEDY +RG+ YCR+DG T ++R I +N
Sbjct: 494 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYN 553
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ F+F+LSTRAGGLGINLATADVV+LYDSDWNPQ+DLQA R +I ++ ++
Sbjct: 554 KPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQ 610
|
Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin in vitro. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| 328785433 | 959 | PREDICTED: chromatin-remodeling complex | 0.614 | 0.184 | 0.830 | 1e-86 | |
| 380022776 | 959 | PREDICTED: chromatin-remodeling complex | 0.614 | 0.184 | 0.830 | 1e-86 | |
| 350403453 | 959 | PREDICTED: chromatin-remodeling complex | 0.614 | 0.184 | 0.830 | 1e-86 | |
| 340728394 | 959 | PREDICTED: LOW QUALITY PROTEIN: chromati | 0.614 | 0.184 | 0.824 | 1e-85 | |
| 322787688 | 1008 | hypothetical protein SINV_08345 [Solenop | 0.614 | 0.175 | 0.824 | 1e-85 | |
| 383866448 | 1009 | PREDICTED: chromatin-remodeling complex | 0.614 | 0.175 | 0.824 | 2e-85 | |
| 307191525 | 1010 | Chromatin-remodeling complex ATPase chai | 0.614 | 0.175 | 0.824 | 2e-85 | |
| 332021363 | 1007 | Chromatin-remodeling complex ATPase chai | 0.614 | 0.175 | 0.824 | 2e-85 | |
| 307211542 | 1008 | Chromatin-remodeling complex ATPase chai | 0.614 | 0.175 | 0.819 | 2e-85 | |
| 156551567 | 879 | PREDICTED: chromatin-remodeling complex | 0.614 | 0.201 | 0.807 | 5e-84 |
| >gi|328785433|ref|XP_396195.3| PREDICTED: chromatin-remodeling complex ATPase chain Iswi isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 147/177 (83%), Positives = 164/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 378 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 437
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WRGF+YCRLDG TAHEDRQRQIN++N
Sbjct: 438 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRLDGNTAHEDRQRQINEYN 497
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 498 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 554
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380022776|ref|XP_003695213.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 147/177 (83%), Positives = 164/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 378 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 437
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WRGF+YCRLDG TAHEDRQRQIN++N
Sbjct: 438 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRLDGNTAHEDRQRQINEYN 497
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 498 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 554
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350403453|ref|XP_003486806.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 147/177 (83%), Positives = 164/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 378 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 437
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WRGF+YCRLDG TAHEDRQRQIN++N
Sbjct: 438 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRLDGNTAHEDRQRQINEYN 497
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 498 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 554
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340728394|ref|XP_003402510.1| PREDICTED: LOW QUALITY PROTEIN: chromatin-remodeling complex ATPase chain Iswi-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 146/177 (82%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 378 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 437
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WRGF+YCRLDG TAHEDRQRQIN++N
Sbjct: 438 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRLDGNTAHEDRQRQINEYN 497
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 498 APESEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 554
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322787688|gb|EFZ13700.1| hypothetical protein SINV_08345 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 146/177 (82%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 378 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 437
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WR F+YCRLDG TAHEDRQRQIN++N
Sbjct: 438 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRLDGNTAHEDRQRQINEYN 497
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 498 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 554
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383866448|ref|XP_003708682.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/177 (82%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 378 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 437
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WRGF+YCRLDG TAHEDRQRQIN++N
Sbjct: 438 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRLDGNTAHEDRQRQINEYN 497
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 498 APESEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 554
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307191525|gb|EFN75028.1| Chromatin-remodeling complex ATPase chain Iswi [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/177 (82%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 379 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 438
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WR F+YCRLDG TAHEDRQRQIN++N
Sbjct: 439 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRLDGNTAHEDRQRQINEYN 498
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 499 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 555
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021363|gb|EGI61737.1| Chromatin-remodeling complex ATPase chain Iswi [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/177 (82%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 377 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 436
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVLIFSQMTRMLDILEDYC+WR F+YCRLDG TAHEDRQRQIN++N
Sbjct: 437 ILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRLDGNTAHEDRQRQINEYN 496
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 497 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 553
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307211542|gb|EFN87620.1| Chromatin-remodeling complex ATPase chain Iswi [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 145/177 (81%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GKMV
Sbjct: 377 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKMV 436
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ QESRVL+FSQMTRMLDILEDYC+WR F+YCRLDG TAHEDRQRQIN++N
Sbjct: 437 ILDKLLPKLQQQESRVLVFSQMTRMLDILEDYCHWRCFQYCRLDGNTAHEDRQRQINEYN 496
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 497 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 553
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156551567|ref|XP_001601734.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 143/177 (80%), Positives = 163/177 (92%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VLMKDID+VNGAGK+EKMRLQNILMQLRKC NHPYLFDGAEPGPPYTTDEHLV+N GK+V
Sbjct: 249 VLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKLV 308
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ Q+SRVLIFSQMTRMLDILEDYC+WR ++YCRLDG TAHEDRQRQIN++N
Sbjct: 309 ILDKLLPKLQQQQSRVLIFSQMTRMLDILEDYCHWRCYQYCRLDGNTAHEDRQRQINEYN 368
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
GS+ FIFMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 369 APGSEKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQQKQVR 425
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| FB|FBgn0011604 | 1027 | Iswi "Imitation SWI" [Drosophi | 0.614 | 0.172 | 0.796 | 2.3e-95 | |
| UNIPROTKB|E1C0M8 | 1038 | SMARCA5 "Uncharacterized prote | 0.590 | 0.163 | 0.8 | 2.3e-91 | |
| UNIPROTKB|F1P3Q4 | 982 | SMARCA1 "Uncharacterized prote | 0.614 | 0.180 | 0.740 | 1.3e-90 | |
| ZFIN|ZDB-GENE-021125-1 | 1035 | smarca5 "SWI/SNF related, matr | 0.614 | 0.171 | 0.757 | 2.2e-90 | |
| UNIPROTKB|K7GNV1 | 1061 | SMARCA1 "Uncharacterized prote | 0.614 | 0.166 | 0.762 | 2.4e-90 | |
| ZFIN|ZDB-GENE-070705-296 | 1036 | si:dkey-148b12.1 "si:dkey-148b | 0.614 | 0.170 | 0.762 | 2.7e-90 | |
| UNIPROTKB|F1N052 | 1052 | SMARCA5 "Uncharacterized prote | 0.590 | 0.161 | 0.788 | 3.4e-90 | |
| UNIPROTKB|E2QWV0 | 1052 | SMARCA5 "Uncharacterized prote | 0.590 | 0.161 | 0.788 | 3.4e-90 | |
| UNIPROTKB|F1RRG9 | 1052 | SMARCA5 "Uncharacterized prote | 0.590 | 0.161 | 0.788 | 3.4e-90 | |
| RGD|2323132 | 760 | LOC100359912 "SWI/SNF-related | 0.590 | 0.223 | 0.788 | 3.4e-90 |
| FB|FBgn0011604 Iswi "Imitation SWI" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 141/177 (79%), Positives = 159/177 (89%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
VL+KDIDVVNGAGK+EKMRLQNILMQLRKC+NHPYLFDGAEPGPPYTTD HLV+NSGKM
Sbjct: 375 VLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTHLVYNSGKMA 434
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKL+ Q SRVLIFSQMTRMLDILEDYC+WR + YCRLDGQT HEDR RQI +FN
Sbjct: 435 ILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFN 494
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
M+ S F+FMLSTRAGGLGINLATADVV++YDSDWNPQMDLQAM R +I ++ ++
Sbjct: 495 MDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVR 551
|
|
| UNIPROTKB|E1C0M8 SMARCA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 2.3e-91, Sum P(2) = 2.3e-91
Identities = 136/170 (80%), Positives = 150/170 (88%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGKL+KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 412 ILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 471
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 472 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYN 531
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
GS F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I
Sbjct: 532 EPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 581
|
|
| UNIPROTKB|F1P3Q4 SMARCA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 131/177 (74%), Positives = 153/177 (86%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HL+ NSGKM+
Sbjct: 354 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLITNSGKML 413
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLL KL+ Q SRVL+FSQMTR+LDILEDYC WRG++YCRLDGQT HE+R+ I+ FN
Sbjct: 414 VLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFN 473
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S FIFMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I ++ ++
Sbjct: 474 APNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 530
|
|
| ZFIN|ZDB-GENE-021125-1 smarca5 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 2.2e-90, Sum P(2) = 2.2e-90
Identities = 134/177 (75%), Positives = 152/177 (85%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL N+LMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 410 ILMKDIDILNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMV 469
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR + YCRLDGQT HE+RQ IN FN
Sbjct: 470 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFN 529
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S F+FMLSTRAGGLGINLATADVV++YDSDWNPQ+DLQAM R +I ++ ++
Sbjct: 530 EPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVR 586
|
|
| UNIPROTKB|K7GNV1 SMARCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.4e-90, Sum P(2) = 2.4e-90
Identities = 135/177 (76%), Positives = 154/177 (87%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDIDV+N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTDEH+V NSGKMV
Sbjct: 433 ILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMV 492
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLL KLK Q SRVLIFSQMTR+LDILEDYC WRG++YCRLDGQT HE+R+ I FN
Sbjct: 493 VLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFN 552
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
+ S FIFMLSTRAGGLGINLA+ADVV+LYDSDWNPQ+DLQAM R +I ++ ++
Sbjct: 553 VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 609
|
|
| ZFIN|ZDB-GENE-070705-296 si:dkey-148b12.1 "si:dkey-148b12.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 135/177 (76%), Positives = 152/177 (85%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 389 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLVINSGKMV 448
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
LDKLLPK++ Q SRVLIFSQMTR+LDILEDYC WRGF+YCRLDG T HE R++ I+ FN
Sbjct: 449 ALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFN 508
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178
S FIFMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I +R +K
Sbjct: 509 APNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVK 565
|
|
| UNIPROTKB|F1N052 SMARCA5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 134/170 (78%), Positives = 149/170 (87%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 427 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 486
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 487 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYN 546
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
S F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I
Sbjct: 547 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
|
|
| UNIPROTKB|E2QWV0 SMARCA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 134/170 (78%), Positives = 149/170 (87%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 427 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 486
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 487 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYN 546
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
S F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I
Sbjct: 547 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
|
|
| UNIPROTKB|F1RRG9 SMARCA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 134/170 (78%), Positives = 149/170 (87%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 427 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 486
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 487 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYN 546
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
S F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I
Sbjct: 547 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
|
|
| RGD|2323132 LOC100359912 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a5-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 134/170 (78%), Positives = 149/170 (87%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+LMKDID++N AGK++KMRL NILMQLRKC NHPYLFDGAEPGPPYTTD HLV NSGKMV
Sbjct: 148 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMV 207
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
VLDKLLPKLK Q SRVLIFSQMTR+LDILEDYC WR ++YCRLDGQT H++RQ IN +N
Sbjct: 208 VLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 267
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
S F+FMLSTRAGGLGINLATADVV+LYDSDWNPQ+DLQAM R +I
Sbjct: 268 EPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 317
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7G8Y3 | ISW2_ORYSJ | 3, ., 6, ., 4, ., - | 0.6836 | 0.6076 | 0.1580 | yes | N/A |
| P28370 | SMCA1_HUMAN | 3, ., 6, ., 4, ., - | 0.7195 | 0.6145 | 0.1679 | yes | N/A |
| P41877 | ISW1_CAEEL | 3, ., 6, ., 4, ., - | 0.7175 | 0.6145 | 0.1754 | yes | N/A |
| Q91ZW3 | SMCA5_MOUSE | 3, ., 6, ., 4, ., - | 0.7570 | 0.6145 | 0.1684 | yes | N/A |
| Q08773 | ISW2_YEAST | 3, ., 6, ., 4, ., - | 0.6797 | 0.6111 | 0.1571 | yes | N/A |
| Q24368 | ISWI_DROME | 3, ., 6, ., 4, ., - | 0.7966 | 0.5833 | 0.1635 | yes | N/A |
| O14139 | HRP3_SCHPO | 3, ., 6, ., 4, ., - | 0.5240 | 0.5451 | 0.1131 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 288 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 6e-96 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 3e-35 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 2e-33 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-25 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 6e-18 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-17 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 5e-16 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 5e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 8e-15 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 3e-13 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-13 | |
| pfam09111 | 118 | pfam09111, SLIDE, SLIDE | 5e-13 | |
| pfam11496 | 279 | pfam11496, HDA2-3, Class II histone deacetylase co | 1e-06 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-04 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 4e-04 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 6e-96
Identities = 122/170 (71%), Positives = 141/170 (82%), Gaps = 2/170 (1%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+L KD+DVVN G E+ RL NI MQLRKC NHPYLF GAEPGPPYTT EHLV NSGKMV
Sbjct: 417 LLQKDLDVVNAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKLK ++SRVLIFSQMTR+LDILEDY +RG++YCR+DG T EDR I+ FN
Sbjct: 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFN 534
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
GS+ F+F+LSTRAGGLGINLATAD+V+LYDSDWNPQ+DLQA R +I
Sbjct: 535 KPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRI 584
|
Length = 1033 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 134 bits (337), Expect = 3e-35
Identities = 69/183 (37%), Positives = 99/183 (54%), Gaps = 18/183 (9%)
Query: 13 AGKLEKMRLQNILMQLRKCSNHPYLFDG-------------AEPGPPYTTDEHLVFNS-G 58
++ + +L +LR+ NHP L D E + L+ S G
Sbjct: 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKG 692
Query: 59 KMVVLDKLL-PKLKAQ--ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQR 115
K+ LD+LL KL + +VLIFSQ T +LD+LEDY G KY RLDG T + RQ
Sbjct: 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQE 752
Query: 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175
I+ FN + +F+LS +AGGLG+NL AD V+L+D WNP ++LQA+ R +I ++
Sbjct: 753 LIDRFN-ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811
Query: 176 SIK 178
+K
Sbjct: 812 PVK 814
|
Length = 866 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 48/70 (68%), Positives = 56/70 (80%)
Query: 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWN 272
Y YCR+DG T EDR I+ FN GS+ F+F+LSTRAGGLGINLATAD+V+LYDSDWN
Sbjct: 511 GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWN 570
Query: 273 PQMDLQAMVR 282
PQ+DLQA R
Sbjct: 571 PQVDLQAQDR 580
|
Length = 1033 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-25
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 49 TDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108
L K+ L +LL + + +VLIF +MLD L + G K L G
Sbjct: 3 KQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62
Query: 109 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRE 168
+ E+R+ + DF + +++T GI+L VV+ YD W+P LQ + R
Sbjct: 63 SQEEREEVLKDFR---EGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
Query: 169 AKILRRG 175
+ ++G
Sbjct: 120 GRAGQKG 126
|
Length = 131 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-18
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 88 DILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATAD 147
+ L + G K RL G + E+R+ ++ FN + +++T G++L D
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFN---NGKIKVLVATDVAERGLDLPGVD 57
Query: 148 VVVLYDSDWNPQMDLQAM 165
+V++YD W+P +Q +
Sbjct: 58 LVIIYDLPWSPASYIQRI 75
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-17
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 92 DYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151
G K RL G + E+R+ + DF + +++T G GI+L ++V+
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFR---NGKSKVLVATDVAGRGIDLPDVNLVIN 57
Query: 152 YDSDWNPQMDLQAM 165
YD WNP +Q +
Sbjct: 58 YDLPWNPASYIQRI 71
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 5e-16
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP 273
RL G + E+R+ + DF + +++T G GI+L ++V+ YD WNP
Sbjct: 8 IKVARLHGGLSQEEREEILEDFR---NGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNP 64
Query: 274 QMDLQAMVRT 283
+Q + R
Sbjct: 65 ASYIQRIGRA 74
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 74.8 bits (183), Expect = 5e-15
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP 273
Y RLDG T + RQ I+ FN + +F+LS +AGGLG+NL AD V+L+D WNP
Sbjct: 736 IKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP 794
Query: 274 QMDLQAMVR 282
++LQA+ R
Sbjct: 795 AVELQAIDR 803
|
Length = 866 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 8e-15
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 269
+E RL G + E+R+ ++ FN + +++T G++L D+V++YD
Sbjct: 8 KELGIKVARLHGGLSQEEREEILDKFN---NGKIKVLVATDVAERGLDLPGVDLVIIYDL 64
Query: 270 DWNPQMDLQAMVRT 283
W+P +Q + R
Sbjct: 65 PWSPASYIQRIGRA 78
|
Length = 82 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEEEDRYLYC 217
EA+I R+ I KA+ K+ RY+ P+ +L+I YG NKGK Y EE DR++ C
Sbjct: 890 EARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLC 939
|
Length = 1033 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-13
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 208 TEEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 267
+ + DG E+R+ + DF + +++T GI+L VV+ Y
Sbjct: 49 RKPGIKVAALHGDGSQ--EEREEVLKDFR---EGEIVVLVATDVIARGIDLPNVSVVINY 103
Query: 268 DSDWNPQMDLQAMVRT 283
D W+P LQ + R
Sbjct: 104 DLPWSPSSYLQRIGRA 119
|
Length = 131 |
| >gnl|CDD|220113 pfam09111, SLIDE, SLIDE | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-13
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYG-ANKGKNYTEEEDRYLYCRLD 220
E KI +R + +KAL K+ +Y+ P +L+I Y NK K Y+EEEDR+L L
Sbjct: 12 EEKIEKRKNQQKALRRKLEQYKNPLQELKIQYPPNNKKKTYSEEEDRFLLLMLY 65
|
The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (pfam00249) repeats or homeodomains. Length = 118 |
| >gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 17 EKMRLQNILMQLRKCSNHPYL---------FDGAEPGPPYTTDEHLVFNSGKMVVLDKLL 67
E ++L + L + HPYL EP EHL SGK +VL+ L+
Sbjct: 53 ESIKL--LFENLSLVATHPYLLIDHYMPKSLLLKEPP------EHLAETSGKFLVLNDLI 104
Query: 68 PKLKAQES--RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFNMEG 124
L E VLI S+ + LD++E +G Y RL G++ E+ +
Sbjct: 105 NLLIRSERDLHVLIISRSVKTLDLVEALLLGKGLNYKRLSGESLYEENHKV---SDKKGS 161
Query: 125 SDIFIFMLSTR 135
++I + ++
Sbjct: 162 LSLWIHLTTSD 172
|
This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus. Length = 279 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQ 116
K+ +L KLL E RV++F + R+++ L + RGFK L G E+R R
Sbjct: 258 EEKLELLLKLL--KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRA 315
Query: 117 INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175
+ F + +++T G+++ V+ YD +P+ + + R + R+G
Sbjct: 316 LEKFKDGELRV---LVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG 371
|
Length = 513 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 2 VLMKDIDVVNGAGKLEK-----MRLQNILMQLRKCSNHPYLF 38
+L K ++ A + + L N++MQLRK NHPYLF
Sbjct: 260 LLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICNHPYLF 301
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| KOG0385|consensus | 971 | 100.0 | ||
| KOG0384|consensus | 1373 | 100.0 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0387|consensus | 923 | 100.0 | ||
| KOG1002|consensus | 791 | 100.0 | ||
| KOG0389|consensus | 941 | 100.0 | ||
| KOG0392|consensus | 1549 | 100.0 | ||
| KOG0386|consensus | 1157 | 99.97 | ||
| KOG0390|consensus | 776 | 99.96 | ||
| KOG4439|consensus | 901 | 99.96 | ||
| KOG0391|consensus | 1958 | 99.95 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.94 | |
| KOG0388|consensus | 1185 | 99.93 | ||
| KOG0385|consensus | 971 | 99.91 | ||
| KOG0388|consensus | 1185 | 99.9 | ||
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.89 | |
| KOG1001|consensus | 674 | 99.89 | ||
| KOG0387|consensus | 923 | 99.88 | ||
| KOG0384|consensus | 1373 | 99.88 | ||
| KOG1015|consensus | 1567 | 99.85 | ||
| KOG1000|consensus | 689 | 99.85 | ||
| KOG0389|consensus | 941 | 99.83 | ||
| KOG1002|consensus | 791 | 99.83 | ||
| KOG0390|consensus | 776 | 99.82 | ||
| KOG0333|consensus | 673 | 99.8 | ||
| KOG0331|consensus | 519 | 99.79 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.78 | |
| KOG0392|consensus | 1549 | 99.77 | ||
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.76 | |
| KOG0391|consensus | 1958 | 99.75 | ||
| KOG0330|consensus | 476 | 99.74 | ||
| KOG0328|consensus | 400 | 99.74 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.73 | |
| PTZ00110 | 545 | helicase; Provisional | 99.72 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.69 | |
| KOG4439|consensus | 901 | 99.68 | ||
| KOG0386|consensus | 1157 | 99.67 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.67 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.67 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.66 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.66 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.65 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.64 | |
| KOG0336|consensus | 629 | 99.64 | ||
| KOG0340|consensus | 442 | 99.63 | ||
| KOG0383|consensus | 696 | 99.63 | ||
| PRK13766 | 773 | Hef nuclease; Provisional | 99.63 | |
| KOG1016|consensus | 1387 | 99.62 | ||
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.62 | |
| KOG0335|consensus | 482 | 99.62 | ||
| KOG0332|consensus | 477 | 99.62 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.62 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.61 | |
| KOG0326|consensus | 459 | 99.57 | ||
| KOG0341|consensus | 610 | 99.57 | ||
| KOG0342|consensus | 543 | 99.57 | ||
| KOG1000|consensus | 689 | 99.56 | ||
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.56 | |
| KOG0345|consensus | 567 | 99.56 | ||
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.56 | |
| KOG1001|consensus | 674 | 99.54 | ||
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.53 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.53 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.52 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.5 | |
| KOG1015|consensus | 1567 | 99.5 | ||
| KOG4284|consensus | 980 | 99.49 | ||
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.49 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.48 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.48 | |
| KOG0348|consensus | 708 | 99.47 | ||
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.47 | |
| KOG0298|consensus | 1394 | 99.46 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.46 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.43 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.42 | |
| KOG0339|consensus | 731 | 99.42 | ||
| KOG0338|consensus | 691 | 99.42 | ||
| KOG0327|consensus | 397 | 99.41 | ||
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.37 | |
| KOG0343|consensus | 758 | 99.34 | ||
| KOG0347|consensus | 731 | 99.34 | ||
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.33 | |
| KOG0344|consensus | 593 | 99.33 | ||
| KOG0346|consensus | 569 | 99.32 | ||
| KOG0350|consensus | 620 | 99.32 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.3 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.3 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.28 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.28 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.28 | |
| KOG0334|consensus | 997 | 99.26 | ||
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.24 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.23 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.2 | |
| KOG0349|consensus | 725 | 99.18 | ||
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.15 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.15 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.15 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.12 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.11 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.1 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.08 | |
| KOG0337|consensus | 529 | 99.06 | ||
| KOG1016|consensus | 1387 | 99.05 | ||
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.04 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.02 | |
| KOG0354|consensus | 746 | 99.02 | ||
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.02 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.0 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.99 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.98 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.97 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 98.95 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.9 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 98.86 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.82 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 98.77 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.73 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 98.72 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 98.67 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 98.64 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 98.62 | |
| KOG1123|consensus | 776 | 98.58 | ||
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.56 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 98.55 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.5 | |
| KOG0351|consensus | 941 | 98.5 | ||
| PRK14701 | 1638 | reverse gyrase; Provisional | 98.43 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.38 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 98.32 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.31 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 98.24 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.23 | |
| KOG0953|consensus | 700 | 98.19 | ||
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 98.17 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.15 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.13 | |
| KOG0352|consensus | 641 | 98.12 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 98.1 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.09 | |
| PTZ00110 | 545 | helicase; Provisional | 98.08 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.07 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.04 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.02 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 98.01 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.0 | |
| KOG0383|consensus | 696 | 97.98 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 97.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.93 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 97.93 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 97.87 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.84 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 97.81 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.79 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 97.79 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 97.77 | |
| KOG0329|consensus | 387 | 97.77 | ||
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 97.77 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.77 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 97.75 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 97.57 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.53 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 97.52 | |
| KOG0298|consensus | 1394 | 97.52 | ||
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.49 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 97.4 | |
| KOG0331|consensus | 519 | 97.4 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.32 | |
| KOG0330|consensus | 476 | 97.26 | ||
| KOG0353|consensus | 695 | 97.24 | ||
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 97.22 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 97.22 | |
| KOG4150|consensus | 1034 | 97.2 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 97.1 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 97.06 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 97.01 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 96.92 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 96.89 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 96.89 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.8 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.76 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 96.74 | |
| KOG0328|consensus | 400 | 96.65 | ||
| PRK02362 | 737 | ski2-like helicase; Provisional | 96.53 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 96.43 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 96.37 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 96.22 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 96.02 | |
| KOG0952|consensus | 1230 | 95.96 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 95.95 | |
| KOG0338|consensus | 691 | 95.9 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 95.84 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 95.82 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 95.68 | |
| KOG0348|consensus | 708 | 95.65 | ||
| KOG0951|consensus | 1674 | 95.62 | ||
| KOG0950|consensus | 1008 | 95.61 | ||
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 95.54 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 95.5 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 95.43 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 95.43 | |
| KOG1123|consensus | 776 | 95.39 | ||
| KOG0920|consensus | 924 | 95.34 | ||
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 95.27 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 95.27 | |
| KOG0339|consensus | 731 | 95.21 | ||
| KOG4284|consensus | 980 | 95.15 | ||
| KOG0949|consensus | 1330 | 94.81 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 94.81 | |
| KOG0336|consensus | 629 | 94.75 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 94.55 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 94.41 | |
| KOG0354|consensus | 746 | 94.28 | ||
| KOG0345|consensus | 567 | 94.27 | ||
| KOG0953|consensus | 700 | 94.15 | ||
| KOG0333|consensus | 673 | 93.9 | ||
| KOG0947|consensus | 1248 | 93.69 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 93.65 | |
| KOG0922|consensus | 674 | 93.4 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 93.28 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 93.2 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 92.85 | |
| KOG0351|consensus | 941 | 92.84 | ||
| KOG0326|consensus | 459 | 92.71 | ||
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 92.57 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 92.51 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 92.26 | |
| KOG0332|consensus | 477 | 92.17 | ||
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 92.12 | |
| KOG0340|consensus | 442 | 92.09 | ||
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 91.85 | |
| KOG0352|consensus | 641 | 91.26 | ||
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 91.17 | |
| KOG0327|consensus | 397 | 91.09 | ||
| PRK09401 | 1176 | reverse gyrase; Reviewed | 90.98 | |
| KOG1133|consensus | 821 | 90.73 | ||
| PRK00254 | 720 | ski2-like helicase; Provisional | 90.35 | |
| KOG0923|consensus | 902 | 89.95 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 89.85 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 89.62 | |
| KOG0335|consensus | 482 | 89.49 | ||
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 89.33 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 89.26 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 88.84 | |
| KOG0948|consensus | 1041 | 88.65 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 88.39 | |
| KOG0341|consensus | 610 | 88.15 | ||
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 87.55 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 87.54 | |
| KOG0924|consensus | 1042 | 87.27 | ||
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 87.24 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 87.19 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 87.07 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 86.71 | |
| KOG0344|consensus | 593 | 86.33 | ||
| KOG0350|consensus | 620 | 85.34 | ||
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 85.29 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 84.69 | |
| KOG0926|consensus | 1172 | 84.13 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 83.6 | |
| KOG1513|consensus | 1300 | 82.58 | ||
| KOG0334|consensus | 997 | 82.14 | ||
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 81.81 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 81.8 | |
| KOG0342|consensus | 543 | 81.2 | ||
| COG4889 | 1518 | Predicted helicase [General function prediction on | 81.16 |
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=340.52 Aligned_cols=199 Identities=67% Similarity=1.103 Sum_probs=186.1
Q ss_pred ccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEe
Q psy10684 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFS 81 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs 81 (288)
||++++++++|.+++.+..+++++|+||+|||||||+++.++.+++...+|++..|+|+..|.++|..+.++|+||+|||
T Consensus 415 iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFS 494 (971)
T KOG0385|consen 415 ILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFS 494 (971)
T ss_pred HHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeH
Confidence 68999999999999889999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchh
Q psy10684 82 QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMD 161 (288)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~ 161 (288)
|++.++|+|+.+|..+++.||+++|+++.++|..+|+.|+.+.+...|||+||.|||.|+||+.|++||+||.+|||..+
T Consensus 495 Qmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~D 574 (971)
T KOG0385|consen 495 QMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVD 574 (971)
T ss_pred HHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhh
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhcch-------HHHHHHHhhhhccc---cchhhhhhc
Q psy10684 162 LQAMVREAKILRRGSI-------KKALEAKMSRYRAP---FHQLRIAYG 200 (288)
Q Consensus 162 ~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~---~~~~~~~~~ 200 (288)
.||++|+|||||+++| +.+|++++.+..+. ++.+++.-+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 9999999999999998 48888887776543 344444443
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=328.40 Aligned_cols=202 Identities=47% Similarity=0.729 Sum_probs=178.3
Q ss_pred CccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCC--------CCCccccccCchHHHHHHHHHHHHh
Q psy10684 1 MVLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPY--------TTDEHLVFNSGKMVVLDKLLPKLKA 72 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~--------~~~~~~~~~s~K~~~l~~ll~~~~~ 72 (288)
|||++||.++.+|.+++..++++.||.||+|||||||+.+.+..-.. .....++.+|+|+-.|.+||.++++
T Consensus 618 ~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~ 697 (1373)
T KOG0384|consen 618 AILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKE 697 (1373)
T ss_pred HHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhc
Confidence 68999999999999999999999999999999999999886432111 2334467799999999999999999
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 152 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~ 152 (288)
.|+|||||||++.|+|+|+++|..+++++-+++|++..+-|+.+|++|+.+++.-.|||+||.|||.||||+.|++||+|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhh---ccccchhhhhhccC
Q psy10684 153 DSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRY---RAPFHQLRIAYGAN 202 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~---~~~~~~~~~~~~~~ 202 (288)
|.+|||...+||+.|||||||++.| +.++++-|.+. +..++.+++..+.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDT 837 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 9999999999999999999999887 35666555443 34455556655543
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=298.86 Aligned_cols=188 Identities=66% Similarity=1.078 Sum_probs=167.4
Q ss_pred ccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEe
Q psy10684 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFS 81 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs 81 (288)
+++++++.++.++ ....+++++++||+||+||+|+....+.+++....+.+..|+|+..|..+|..+...++||||||
T Consensus 417 ll~k~~~~l~~g~--~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFS 494 (1033)
T PLN03142 417 LLQKDLDVVNAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFS 494 (1033)
T ss_pred HHHHHHHHHhccc--cHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeeh
Confidence 4556667766654 45679999999999999999998877776777777788899999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchh
Q psy10684 82 QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMD 161 (288)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~ 161 (288)
||+.++++|+.+|...|+++++++|+++.++|+.++++|+.+++...|+|+||++||.||||+.|++||+||+||||..+
T Consensus 495 Qft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d 574 (1033)
T PLN03142 495 QMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVD 574 (1033)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHH
Confidence 99999999999999999999999999999999999999986666677899999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhcch-------HHHHHHHhhhhccc
Q psy10684 162 LQAMVREAKILRRGSI-------KKALEAKMSRYRAP 191 (288)
Q Consensus 162 ~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~ 191 (288)
.||+||+||+||+++| +.+|++++.+.+..
T Consensus 575 ~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 575 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred HHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 9999999999999987 47777776655443
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=266.12 Aligned_cols=173 Identities=40% Similarity=0.595 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc-cccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh-hc
Q psy10684 20 RLQNILMQLRKCSNHPYLFDGAEPGPPYTTDE-HLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY-WR 97 (288)
Q Consensus 20 ~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~-~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~-~~ 97 (288)
+.|.-+..||++||||.|+...........+. ..+..|+|+.++..+++.+..++.++++|+|...|+|+|+..|. ..
T Consensus 491 ~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~ 570 (923)
T KOG0387|consen 491 NCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAK 570 (923)
T ss_pred cceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcC
Confidence 35666788999999999998754333333232 56778999999999999999999999999999999999999999 68
Q ss_pred CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 98 GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 98 ~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|+.|++++|.++...|+.++++|+ ++..+.|||++|++||.|+||++|++||+|||+|||+.+.||..|++|+||++.|
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fn-e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV 649 (923)
T KOG0387|consen 571 GYSYLRMDGTTPAALRQKLVDRFN-EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDV 649 (923)
T ss_pred CceEEEecCCCccchhhHHHHhhc-CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccce
Confidence 999999999999999999999999 7889999999999999999999999999999999999999999999999999987
Q ss_pred -------HHHHHHHhhhhccccc
Q psy10684 178 -------KKALEAKMSRYRAPFH 193 (288)
Q Consensus 178 -------~~~i~~~~~~~~~~~~ 193 (288)
..+|++++...+-.++
T Consensus 650 ~VYRL~t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 650 VVYRLMTAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred EEEEEecCCcHHHHHHHHHHHHH
Confidence 4778888766654433
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=253.60 Aligned_cols=145 Identities=28% Similarity=0.407 Sum_probs=135.5
Q ss_pred cccCchHHHHHHHHHHHHhCC--CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQE--SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~--~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
+..|.|+++|.+-|..+++++ -|.||||||+.++|.+.-.|.+.|+.++.+.|+|++..|...++.|+ ++.+|+|||
T Consensus 616 ~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~-nd~~c~vfL 694 (791)
T KOG1002|consen 616 WQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK-NDIDCRVFL 694 (791)
T ss_pred hcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc-cCCCeEEEE
Confidence 347999999999998877765 58999999999999999999999999999999999999999999999 899999999
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhhhh
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRIAY 199 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~~~ 199 (288)
+|.++||+.|||+.|++|+++||||||+.+.||.+|+|||||.++| +.+|++++.++++.+..++.+.
T Consensus 695 vSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaT 769 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHAT 769 (791)
T ss_pred EEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999997 5899999999998888876654
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=260.55 Aligned_cols=172 Identities=45% Similarity=0.660 Sum_probs=153.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCC----------------------------------------------CCCCCCCCccccc
Q psy10684 22 QNILMQLRKCSNHPYLFDGAE----------------------------------------------PGPPYTTDEHLVF 55 (288)
Q Consensus 22 ~~~l~~Lrq~~~hP~l~~~~~----------------------------------------------~~~~~~~~~~~~~ 55 (288)
-+.||+||++++||.|...-. ....+......+.
T Consensus 679 ~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~m 758 (941)
T KOG0389|consen 679 GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWM 758 (941)
T ss_pred chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhh
Confidence 458999999999999983210 1122333344566
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.|+|...|..+|..+..+|+||||||||+.|+|+|+..|...++.|++++|++...+|+.+|+.|+ .+..+.|||+||+
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn-~d~difVFLLSTK 837 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFN-TDKDIFVFLLSTK 837 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhc-cCCceEEEEEeec
Confidence 899999999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQ 194 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~ 194 (288)
|||.||||++|++||++|.++||-...||.+||||+||+++| +.+|++.+.++...+-.
T Consensus 838 AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999997 68999998887765433
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=264.25 Aligned_cols=177 Identities=35% Similarity=0.539 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCCCC---------CCCCccccccCchHHHHHHHHHHHHh--------------CC
Q psy10684 18 KMRLQNILMQLRKCSNHPYLFDGAEPGPP---------YTTDEHLVFNSGKMVVLDKLLPKLKA--------------QE 74 (288)
Q Consensus 18 ~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~---------~~~~~~~~~~s~K~~~l~~ll~~~~~--------------~~ 74 (288)
+.+||+.|..||+.||||.|+.++..... ....-|-+..|+|+.+|..+|.+..- .+
T Consensus 1261 ~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsq 1340 (1549)
T KOG0392|consen 1261 KTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQ 1340 (1549)
T ss_pred hHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhcc
Confidence 78999999999999999999987522211 11122335689999999999988531 24
Q ss_pred CeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
++++||||+..++|+++..|-+. .+.|.+++|++++.+|++++++|| +++.+.|+|++|.+||.||||++|++||+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN-~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN-EDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc-CCCceeEEEEeeeccccccccCCCceEEE
Confidence 79999999999999999988765 567889999999999999999999 88999999999999999999999999999
Q ss_pred ecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
+|.+|||..+.||++|+||+||++.| ..+++||+.-++.++-.+
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnv 1470 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNV 1470 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHH
Confidence 99999999999999999999999997 488899988777766555
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=254.19 Aligned_cols=202 Identities=48% Similarity=0.698 Sum_probs=169.2
Q ss_pred CccchHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHH
Q psy10684 14 GKLEKMRLQNILMQLRKCSNHPYLFDGAEPG-PPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILED 92 (288)
Q Consensus 14 ~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~-~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~ 92 (288)
+++.+..+++.+++||+|||||++....+.. .+.-....++..|+|+..|.++|..+...+++|+.|+|++..+++++.
T Consensus 665 g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEd 744 (1157)
T KOG0386|consen 665 GKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILED 744 (1157)
T ss_pred ccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 4567778999999999999999999543221 222222578889999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 93 YCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 93 ~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
+|...++.|.+++|.++.++|...++.|+.+++.+.+||+||.+||.||||+.|++||+||++|||..+.||.+|+||+|
T Consensus 745 yL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig 824 (1157)
T KOG0386|consen 745 YLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 824 (1157)
T ss_pred HHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchH-------HHHHHHhhhhc---cccchhhhhhccCCCcccccccchhh
Q psy10684 173 RRGSIK-------KALEAKMSRYR---APFHQLRIAYGANKGKNYTEEEDRYL 215 (288)
Q Consensus 173 q~~~v~-------~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~gi~ 215 (288)
|++.|. .++++++.... .....-++..|.....+..++++.+.
T Consensus 825 q~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~L 877 (1157)
T KOG0386|consen 825 QKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFL 877 (1157)
T ss_pred chhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHH
Confidence 999873 55666654442 22333355556655555555544443
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=239.72 Aligned_cols=175 Identities=34% Similarity=0.566 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCC---C------------CccccccCchHHHHHHHHHHHHhC-CCeEEEEecch
Q psy10684 21 LQNILMQLRKCSNHPYLFDGAEPGPPYT---T------------DEHLVFNSGKMVVLDKLLPKLKAQ-ESRVLIFSQMT 84 (288)
Q Consensus 21 ~~~~l~~Lrq~~~hP~l~~~~~~~~~~~---~------------~~~~~~~s~K~~~l~~ll~~~~~~-~~kviIFs~~~ 84 (288)
-|..++.|+++|+||.|+...+...... . .......|+|+..|..++....+. ..++++-++++
T Consensus 526 ~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~ 605 (776)
T KOG0390|consen 526 ALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYT 605 (776)
T ss_pred hhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHH
Confidence 6788999999999999996322111100 0 000112478888888888655544 57999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhh
Q psy10684 85 RMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQA 164 (288)
Q Consensus 85 ~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa 164 (288)
.+++.++..++.+|..++++||+++..+|+.+++.||++.+...|||+|++|||.||||.+|++||+||++|||+.+.||
T Consensus 606 ~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 606 QTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQA 685 (776)
T ss_pred HHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHH
Confidence 99999999999999999999999999999999999998877779999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 165 MVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 165 ~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
++|++|.||+++| ..++++++.+.+..++.+
T Consensus 686 maR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGL 723 (776)
T ss_pred HHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhh
Confidence 9999999999997 588888887776655443
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=228.03 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=158.6
Q ss_pred hcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCC----------------------------------------CCC--
Q psy10684 10 VNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPG----------------------------------------PPY-- 47 (288)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~----------------------------------------~~~-- 47 (288)
..|......+.+|.+|+||||+|+||.+....-+. ++.
T Consensus 639 aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~ 718 (901)
T KOG4439|consen 639 AAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFP 718 (901)
T ss_pred hcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccch
Confidence 34556778888999999999999999776321100 000
Q ss_pred CCCccccccCchHHHHHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 48 TTDEHLVFNSGKMVVLDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 48 ~~~~~~~~~s~K~~~l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
....+....|.|+..+++.++.+ ....+|++|-|||+.++..+...+...|..|..++|....++|+.+++.|+...++
T Consensus 719 ~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~ 798 (901)
T KOG4439|consen 719 DQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGG 798 (901)
T ss_pred hhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCC
Confidence 11112345799999999999987 45579999999999999999999999999999999999999999999999988888
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
.+|+|++..+||+||||.+|+|+|++|..|||+.+.||.+|++|+||++.| +++++.++..++..+..+
T Consensus 799 ~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldl 874 (901)
T KOG4439|consen 799 ARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDL 874 (901)
T ss_pred ceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 688999988887655444
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-28 Score=228.90 Aligned_cols=137 Identities=46% Similarity=0.790 Sum_probs=130.7
Q ss_pred cccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 52 HLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 52 ~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.+-++++|+..|.-+|..+..+|++||||+|++.|+|.|+.+|..+|+.|++++|.++.++|+.++++|| .+..+.|++
T Consensus 1254 LiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFN-aD~RIfcfI 1332 (1958)
T KOG0391|consen 1254 LIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFN-ADRRIFCFI 1332 (1958)
T ss_pred eeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhc-CCCceEEEE
Confidence 3556899999999999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYR 189 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~ 189 (288)
+||.+|+.|+||++|++||+||.+|||.++.||-+|+|||||+++| +.+|++++.+..
T Consensus 1333 LSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1333 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred EeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999997 578888887665
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=227.72 Aligned_cols=178 Identities=40% Similarity=0.636 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCC-CCCCC------------CCCCccccccC-chHHHHHHHH-HHHHhCCC--eEEE
Q psy10684 17 EKMRLQNILMQLRKCSNHPYLFDGA-EPGPP------------YTTDEHLVFNS-GKMVVLDKLL-PKLKAQES--RVLI 79 (288)
Q Consensus 17 ~~~~~~~~l~~Lrq~~~hP~l~~~~-~~~~~------------~~~~~~~~~~s-~K~~~l~~ll-~~~~~~~~--kviI 79 (288)
...++++.+++||++|+||.++... ..... .......+..| +|+..+.+++ ..+..++. |++|
T Consensus 637 ~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvli 716 (866)
T COG0553 637 SELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLI 716 (866)
T ss_pred hhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEE
Confidence 3778999999999999999999765 22111 11122234567 8999999999 78888888 9999
Q ss_pred EecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcc
Q psy10684 80 FSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQ 159 (288)
Q Consensus 80 Fs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~ 159 (288)
|+|++.++++++..|...++.++.++|+++.++|+..++.|+ .+++..|+++++++||.|+||+.|++||+||+||||+
T Consensus 717 fsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~-~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~ 795 (866)
T COG0553 717 FSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPA 795 (866)
T ss_pred EeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhh-cCCCCceEEEEecccccceeecccceEEEeccccChH
Confidence 999999999999999999999999999999999999999999 4477899999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 160 MDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 160 ~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
.+.||++|+||+||+++| ++++++++.+.+..+..+
T Consensus 796 ~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l 838 (866)
T COG0553 796 VELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQEL 838 (866)
T ss_pred HHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHH
Confidence 999999999999999997 488888888777665444
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-26 Score=211.28 Aligned_cols=141 Identities=49% Similarity=0.864 Sum_probs=131.9
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
++.+|+|+..|.++|..+..++++|++|.|++.|+++++.+|..+++++.+++|+....+|..++..|+ .+.+.|||+
T Consensus 1023 FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ--~sdiFvFLL 1100 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ--ASDIFVFLL 1100 (1185)
T ss_pred hhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc--CCceEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999998 389999999
Q ss_pred ecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 133 STRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 133 s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
||.+||.|+||+.|++||+||.+|||....||++|+||.||++.| .++|++++.+....+..+
T Consensus 1101 STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~v 1170 (1185)
T KOG0388|consen 1101 STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEV 1170 (1185)
T ss_pred ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999986 488888887776655554
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-25 Score=203.22 Aligned_cols=178 Identities=34% Similarity=0.560 Sum_probs=134.8
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 154 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~ 154 (288)
.-++||+...++.......+-...++...=.|.+....-+.++-+.+ .+|+|-++|+-
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLR----------------------KccnHPYLF~g 453 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLR----------------------KCCNHPYLFDG 453 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHH----------------------HhcCCccccCC
Confidence 45889999999887777776666665444334333233333444443 24566666653
Q ss_pred -----CCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCcccc
Q psy10684 155 -----DWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHE 226 (288)
Q Consensus 155 -----~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~ 226 (288)
|+.+. .| =+.+.|.. ..++..+.++.+..++++++++++.+.++.++ .+++.||++||+++.+
T Consensus 454 ~ePg~pyttd--eh------Lv~nSGKm-~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~e 524 (971)
T KOG0385|consen 454 AEPGPPYTTD--EH------LVTNSGKM-LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHE 524 (971)
T ss_pred CCCCCCCCcc--hH------HHhcCcce-ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcH
Confidence 22221 12 12222222 12344578889999999999999999999986 5799999999999999
Q ss_pred chhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 227 DRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 227 ~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|..+|+.|+.+.+..+|||+|++|||+|+||++|+.||+||++|||.++.||+|||
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999977778999999999999999999999999999999999999999999
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-25 Score=200.99 Aligned_cols=142 Identities=38% Similarity=0.598 Sum_probs=115.3
Q ss_pred EEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcccccc
Q psy10684 131 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE 210 (288)
Q Consensus 131 l~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 210 (288)
|++..+-.-|+++.. ...|.|...+.--+.+- +--.+. -..+++.+.++++..|+++...+++.+.++.|+
T Consensus 992 LI~~ead~PeId~E~------~~~pLn~~i~~Ppm~~F--itdSgK-L~~LDeLL~kLkaegHRvL~yfQMTkM~dl~Ed 1062 (1185)
T KOG0388|consen 992 LISNEADLPEIDLEN------RHIPLNTTIYVPPMNTF--ITDSGK-LVVLDELLPKLKAEGHRVLMYFQMTKMIDLIED 1062 (1185)
T ss_pred eeecccCCCCCCccc------cCcccccceecCcHHhh--hccccc-eeeHHHHHHHhhcCCceEEehhHHHHHHHHHHH
Confidence 667777777888765 22333333332223332 111111 134677889999999999999999999999997
Q ss_pred ---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 ---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++|.|.++||+....+|..++.+|| . ++++|||+|++|||+|+|||+|+.||+||++|||..+.||||||
T Consensus 1063 Yl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ-~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRA 1136 (1185)
T KOG0388|consen 1063 YLVYRGYTYLRLDGSSKASDRRDVVRDWQ-A-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRA 1136 (1185)
T ss_pred HHHhhccceEEecCcchhhHHHHHHhhcc-C-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHH
Confidence 46899999999999999999999999 4 99999999999999999999999999999999999999999999
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=205.80 Aligned_cols=131 Identities=20% Similarity=0.249 Sum_probs=113.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH-hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC-YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l-~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..++|+..|.++++.. .++|+||||++..+++.|...| ...|++++.+||+++..+|.++++.|+++++++.| |++
T Consensus 476 ~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIs 552 (956)
T PRK04914 476 NFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLC 552 (956)
T ss_pred ccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEe
Confidence 3467999999988763 3789999999999999999999 56799999999999999999999999954445666 678
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhh
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRY 188 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~ 188 (288)
|++|++|+|++.+++||+||+||||..+.||+||+||+||+++| +.++++.+.++
T Consensus 553 TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 553 SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999886 34455555443
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-24 Score=204.69 Aligned_cols=140 Identities=26% Similarity=0.460 Sum_probs=126.3
Q ss_pred CchHHHHHHHHHHHHhCCC-eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 57 SGKMVVLDKLLPKLKAQES-RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~-kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
|.|+..+.+.|........ |+||||||+.+++.++..|...++.+.+++|.++...|.+.+..|. .++.++|+++|.+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll~Slk 599 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALLMSLK 599 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHHHHHH
Confidence 7788888877774332233 9999999999999999999999999999999999999999999999 8899999999999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhh
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRI 197 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~ 197 (288)
+|+.||||+.|+||+.+||||||..++||++|+||+||+++| ++++++++.++++.+.....
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~ 668 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNA 668 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999986 58899999888877666543
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-23 Score=190.64 Aligned_cols=179 Identities=27% Similarity=0.424 Sum_probs=128.4
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc--ccceeEEe
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA--TADVVVLY 152 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~--~a~~vi~~ 152 (288)
+-.|+||+.+.....+...+-. -..+..-|+ +..++ ..|+++- -|+|--++
T Consensus 457 ~E~VlfC~LT~~QR~~Y~~fl~----------------s~~v~~i~n-g~~~~----------l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 457 EEIVLFCRLTKLQRRLYQRFLN----------------SSEVNKILN-GKRNC----------LSGIDILRKICNHPDLL 509 (923)
T ss_pred cceEEEEeccHHHHHHHHHHhh----------------hHHHHHHHc-CCccc----------eechHHHHhhcCCcccc
Confidence 4578999999887777665421 112334444 33332 1266654 56766666
Q ss_pred cCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcccccc----cchhhhcccCCCccccch
Q psy10684 153 DSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE----EDRYLYCRLDGQTAHEDR 228 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~gi~~~~l~G~~~~~~R 228 (288)
+..- ....|-.+-.+-.-..+.+ ..+...+..+....++++.+++...+.++.|. ..||.|+++||.++...|
T Consensus 510 ~~~~--~~~~~~~D~~g~~k~sGKm-~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 510 DRRD--EDEKQGPDYEGDPKRSGKM-KVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred cCcc--cccccCCCcCCChhhcchH-HHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 6531 1111111111111111122 23455577788888899999888888887774 469999999999999999
Q ss_pred hHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 229 QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 229 ~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
+..|++|| ++..++|||+++++||+|||||+||+||+|||+|||..+.||-+||+
T Consensus 587 ~~lVd~Fn-e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRaw 641 (923)
T KOG0387|consen 587 QKLVDRFN-EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAW 641 (923)
T ss_pred hHHHHhhc-CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999993
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=203.31 Aligned_cols=108 Identities=47% Similarity=0.688 Sum_probs=101.3
Q ss_pred HHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCC
Q psy10684 180 ALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 256 (288)
Q Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~gl 256 (288)
.++..+.++++.+|++++++++..+.++.++ .++|.|.+|||+++.+-|+++||+|+.++++-||||+|++|||+|+
T Consensus 687 LLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 687 LLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred eHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 3566678889999999999999999998887 5699999999999999999999999988999999999999999999
Q ss_pred CccccceEEEeCCCCChhhhhhhhhhh--------hhhc
Q psy10684 257 NLATADVVVLYDSDWNPQMDLQAMVRT--------VIAY 287 (288)
Q Consensus 257 nl~~a~~v~~~d~~wnp~~~~Qa~~Ra--------~~~~ 287 (288)
||++|++||++|++|||.++.||++|| |+||
T Consensus 767 NLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 767 NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred cccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 999999999999999999999999999 7777
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=180.99 Aligned_cols=135 Identities=35% Similarity=0.612 Sum_probs=119.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----------------------cCcEEEEeeCCCCHHH
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----------------------RGFKYCRLDGQTAHED 112 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----------------------~~~~~~~~~G~~~~~~ 112 (288)
..|+|+-.|+++|....+-|+|+|||||+...+|.|+.+|.. .|..|.+++|++...+
T Consensus 1123 ~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~ 1202 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQS 1202 (1567)
T ss_pred hcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHH
Confidence 379999999999999888899999999999999999998843 2578999999999999
Q ss_pred HHHHHHhhcCCCC-CeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHH
Q psy10684 113 RQRQINDFNMEGS-DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAK 184 (288)
Q Consensus 113 R~~~i~~F~~~~~-~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~ 184 (288)
|+...++||++.. ..+++|+||+||+.|+||.+||+||+||..|||+...|+|=|++|+||+++| ..+++++
T Consensus 1203 R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeK 1282 (1567)
T KOG1015|consen 1203 RKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEK 1282 (1567)
T ss_pred HHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHH
Confidence 9999999994322 3578999999999999999999999999999999999999999999999997 2556666
Q ss_pred hhhhc
Q psy10684 185 MSRYR 189 (288)
Q Consensus 185 ~~~~~ 189 (288)
+.+.+
T Consensus 1283 IYkRQ 1287 (1567)
T KOG1015|consen 1283 IYKRQ 1287 (1567)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=170.91 Aligned_cols=144 Identities=24% Similarity=0.331 Sum_probs=124.7
Q ss_pred cCchHHHHHHHHHH----HHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPK----LKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~----~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.-.|+.++.+.|.. ....+.|.+||+++..++|.|+..+..+++..++++|+++..+|+.+.+.|+ .+.+++|-+
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ-~seev~VAv 548 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ-TSEEVRVAV 548 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc-cccceEEEE
Confidence 45677788877766 3345789999999999999999999999999999999999999999999999 788999999
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRIAYG 200 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~~~~ 200 (288)
++..+|+.||+++.|+.|++.+.+|||+...||.+|+||+||+.+| |.++++.+-.....+-.++.+.+
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999987 56777666555444444444433
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-21 Score=181.56 Aligned_cols=104 Identities=38% Similarity=0.560 Sum_probs=97.7
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC
Q psy10684 179 KALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g 255 (288)
..+.+.+.+++..+++++++++++.+.++.|. -.++.|+|+||+|...+|+.+|++|+ .+.+++|||+|++|||+|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn-~d~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFN-TDKDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhc-cCCceEEEEEeeccCcce
Confidence 45566678888999999999999999998884 56899999999999999999999999 999999999999999999
Q ss_pred CCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 256 lnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|||+||+||++|-++||..+.||.|||
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHH
Confidence 9999999999999999999999999999
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-21 Score=172.01 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=85.3
Q ss_pred cccchhhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE
Q psy10684 190 APFHQLRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 266 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~ 266 (288)
..--+.+++++++++.++.+ .+.|+..+.+.|+|++.+|+..|+.|. +++++.|||+|++|||+.||||.||+|++
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~-nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK-NDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc-cCCCeEEEEEEeccCceEeeechhceeEe
Confidence 34445678888888888776 567899999999999999999999999 99999999999999999999999999999
Q ss_pred eCCCCChhhhhhhhhhh
Q psy10684 267 YDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 267 ~d~~wnp~~~~Qa~~Ra 283 (288)
+||||||++|.||.||.
T Consensus 715 mDPWWNpaVe~Qa~DRi 731 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRI 731 (791)
T ss_pred ecccccHHHHhhhhhhH
Confidence 99999999999999997
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-21 Score=182.07 Aligned_cols=73 Identities=45% Similarity=0.783 Sum_probs=67.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
.|+.++++||+|+..+|+++|+.||...+.-+|||+|++|||+||||++|||+|++||+|||+++.|||+||+
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~ 690 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAW 690 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhc
Confidence 4899999999999999999999999444445999999999999999999999999999999999999999993
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=162.60 Aligned_cols=146 Identities=22% Similarity=0.326 Sum_probs=126.6
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCcc---ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 28 LRKCSNHPYLFDGAEPGPPYTTDEH---LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 28 Lrq~~~hP~l~~~~~~~~~~~~~~~---~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
+|+....|..+.......+.+..+. ++..+.|...|+++|+.. ....+|||.+....+|+|++.|.+.|+.++.+
T Consensus 470 ar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tl 547 (673)
T KOG0333|consen 470 ARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTL 547 (673)
T ss_pred HHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEe
Confidence 5666677877776555444444443 456889999999999863 46799999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
||+.++++|+.++..|+.+..++ |++|+++|+|+|++++++|||||..-+-..|.|||||++|.|+.|++.
T Consensus 548 Hg~k~qeQRe~aL~~fr~~t~dI---lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 548 HGGKSQEQRENALADFREGTGDI---LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred eCCccHHHHHHHHHHHHhcCCCE---EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE
Confidence 99999999999999999555554 899999999999999999999999999999999999999999999863
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=163.07 Aligned_cols=119 Identities=22% Similarity=0.388 Sum_probs=108.4
Q ss_pred cCchHHHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+|...|.++|.... ..+.|+||||+....++.|+..|+..++++..|||..++.+|..+++.|.+++. .| |++|
T Consensus 322 ~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~--~v-LVAT 398 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKS--PV-LVAT 398 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCc--ce-EEEc
Confidence 6788999999999876 345799999999999999999999999999999999999999999999984433 33 9999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|||+.++++||+||+|-|...|.||+||++|.|+++..
T Consensus 399 dVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 399 DVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred ccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 9999999999999999999999999999999999999888764
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-20 Score=181.31 Aligned_cols=102 Identities=49% Similarity=0.808 Sum_probs=90.2
Q ss_pred HHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc
Q psy10684 182 EAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 258 (288)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl 258 (288)
...+.++....+++++++++..+.++.++ ..|+.+++++|+++.++|++++++|+..+++.+|+|+|++|||+||||
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 33455666778899999998888777775 468999999999999999999999994456678999999999999999
Q ss_pred cccceEEEeCCCCChhhhhhhhhhh
Q psy10684 259 ATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 259 ~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++||+||+||+||||+.+.||+|||
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHh
Confidence 9999999999999999999999999
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-20 Score=177.01 Aligned_cols=97 Identities=40% Similarity=0.634 Sum_probs=88.8
Q ss_pred cccchhhhhhccCCCcccccccc------hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccce
Q psy10684 190 APFHQLRIAYGANKGKNYTEEED------RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 263 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~e~~~------gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~ 263 (288)
...|+++++-+...+.++.|+.. .+.|.++||++++.+|++++++|| ++|.+.|+|+++..||+|||||+|++
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN-~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN-EDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc-CCCceeEEEEeeeccccccccCCCce
Confidence 36788888888888888887632 566889999999999999999999 99999999999999999999999999
Q ss_pred EEEeCCCCChhhhhhhhhhh--------hhhc
Q psy10684 264 VVLYDSDWNPQMDLQAMVRT--------VIAY 287 (288)
Q Consensus 264 v~~~d~~wnp~~~~Qa~~Ra--------~~~~ 287 (288)
||+++.+|||..+.|||||| |+||
T Consensus 1417 VVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1417 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred EEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 99999999999999999999 7887
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=131.72 Aligned_cols=117 Identities=30% Similarity=0.485 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+..++......+.++|||+++...++.+...|...++++..+||+++..+|...++.|+.+. . .+|+++.+.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~-~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--I-VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--C-cEEEEcChh
Confidence 5999999998876656789999999999999999999988999999999999999999999998433 3 347899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||+++++|++..+.|++||++|.|+++.+
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 128 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceE
Confidence 9999999999999999999999999999999999987654
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-19 Score=170.10 Aligned_cols=104 Identities=45% Similarity=0.695 Sum_probs=96.8
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC
Q psy10684 179 KALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g 255 (288)
.++--.+.+++..+|+++++.++..+.++.|. -.|+.|.+|||.+..++|+.++++|| .+..+++|++|++.||+|
T Consensus 1263 QtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFN-aD~RIfcfILSTrSggvG 1341 (1958)
T KOG0391|consen 1263 QTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFN-ADRRIFCFILSTRSGGVG 1341 (1958)
T ss_pred HHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhc-CCCceEEEEEeccCCccc
Confidence 34445577888999999999999999998886 46999999999999999999999999 899999999999999999
Q ss_pred CCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 256 lnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|||+|+.||+||.+|||..+.||-||+
T Consensus 1342 iNLtgADTVvFYDsDwNPtMDaQAQDrC 1369 (1958)
T KOG0391|consen 1342 INLTGADTVVFYDSDWNPTMDAQAQDRC 1369 (1958)
T ss_pred cccccCceEEEecCCCCchhhhHHHHHH
Confidence 9999999999999999999999999998
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-18 Score=148.68 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=105.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.--|-.+|+.+|++. .+..+||||+.....+++.-.|+..|+.+..+||.|+++.|..+++.|+.+..+ +|++|+
T Consensus 284 ~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TD 358 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTD 358 (476)
T ss_pred ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecc
Confidence 345667888888863 457999999999999999999999999999999999999999999999944443 399999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|+||||++.+++|||||.|-+...|.||+||++|.|+.+.+
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ 400 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKA 400 (476)
T ss_pred hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcce
Confidence 999999999999999999999999999999999999998875
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-18 Score=142.28 Aligned_cols=118 Identities=21% Similarity=0.344 Sum_probs=105.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
+.-|.+.|.++-..+.- ..+||||+.....|+|.+.++..++.+..+||.|++++|.+++..|++.. .+| |++|+
T Consensus 250 EewKfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~--Srv-LitTD 324 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK--SRV-LITTD 324 (400)
T ss_pred hhhhHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC--ceE-EEEec
Confidence 34477777777665433 48999999999999999999999999999999999999999999998544 444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
+=++|++.+.++.|||||.|-|+..|.|||||.||.|++|.+-
T Consensus 325 VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvai 367 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367 (400)
T ss_pred hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEE
Confidence 9999999999999999999999999999999999999999753
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=157.47 Aligned_cols=115 Identities=26% Similarity=0.488 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|+..|..+++.. ...++||||+....++.|...|...|+++..+||++++++|.+.++.|+ ++...| |++|+++
T Consensus 259 ~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~--~g~~~v-LVaTDva 333 (513)
T COG0513 259 EKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK--DGELRV-LVATDVA 333 (513)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH--cCCCCE-EEEechh
Confidence 3888888888753 3348999999999999999999999999999999999999999999998 444455 8999999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|||+...++|||||.|.++..|.||+||++|.|.+|..
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~a 373 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVA 373 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCCCeE
Confidence 9999999999999999999999999999999999988864
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-18 Score=159.32 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=109.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
....|...|.+++..+...+.++||||+....++.|...|...++++..+||++++++|..+++.|++ +.+.| |++|
T Consensus 358 ~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~--G~~~I-LVaT 434 (545)
T PTZ00110 358 EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSPI-MIAT 434 (545)
T ss_pred echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc--CCCcE-EEEc
Confidence 35678888999988776677899999999999999999999999999999999999999999999984 44444 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+
T Consensus 435 dv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a 477 (545)
T PTZ00110 435 DVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS 477 (545)
T ss_pred chhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999998765
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-17 Score=149.94 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|...+..++.. ....++||||+....++.+...|...|+++..+||++++++|..+++.|+. +++.| |++|++
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~v-LVaTdv 314 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR--GDLDI-LVATDV 314 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc--CCCcE-EEEech
Confidence 4566777776654 346799999999999999999999999999999999999999999999984 44555 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+|++.+++||+||+|+++..|.|++||++|.|+.+.+
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a 355 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS 355 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE
Confidence 99999999999999999999999999999999999999875
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-17 Score=153.03 Aligned_cols=98 Identities=29% Similarity=0.451 Sum_probs=89.1
Q ss_pred hccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceE
Q psy10684 188 YRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 264 (288)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v 264 (288)
+....+++++.+++++..+.... ..|+.|..++|.+.+.+|+..+++|+.+....+|+|+|+.|||+||||++|||+
T Consensus 742 ~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 742 LTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred hhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 56677788888888887776664 568999999999999999999999997778899999999999999999999999
Q ss_pred EEeCCCCChhhhhhhhhhhhh
Q psy10684 265 VLYDSDWNPQMDLQAMVRTVI 285 (288)
Q Consensus 265 ~~~d~~wnp~~~~Qa~~Ra~~ 285 (288)
|++|.+|||+.|.||.||.|.
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR 842 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYR 842 (901)
T ss_pred EEEecccCHHHHHHHHHHHHH
Confidence 999999999999999999964
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-17 Score=157.20 Aligned_cols=105 Identities=44% Similarity=0.686 Sum_probs=98.3
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCccccccc---chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC
Q psy10684 179 KALEAKMSRYRAPFHQLRIAYGANKGKNYTEEE---DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g 255 (288)
+.++..+.++++..|+++.+.+++...+..|+. .++.|.++||.+..++|-.+++.||+.++++++||+|++|||+|
T Consensus 713 ELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragglg 792 (1157)
T KOG0386|consen 713 ELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLG 792 (1157)
T ss_pred HHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccc
Confidence 455666788899999999999999999999874 47889999999999999999999998889999999999999999
Q ss_pred CCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 256 lnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|||+.|+.||++|++|||..+.||.|||
T Consensus 793 lNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 793 LNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred cchhhcceEEEecCCCCchhHHHHHHHH
Confidence 9999999999999999999999999999
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=145.39 Aligned_cols=115 Identities=19% Similarity=0.369 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...|..+++. ....++||||+....++.+...|...++++..+||++++.+|..+++.|++ +.+.| |++|+++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~v-LVaTd~~ 305 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD--GRVNV-LVATDVA 305 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC--CCCcE-EEEcccc
Confidence 455555555542 245799999999999999999999999999999999999999999999984 45555 8899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||+||+|+++..|.|++||++|.|..+.+
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~a 345 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTA 345 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceE
Confidence 9999999999999999999999999999999999988753
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-17 Score=114.48 Aligned_cols=78 Identities=27% Similarity=0.492 Sum_probs=71.5
Q ss_pred HHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 92 DYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 92 ~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+.|+..++++..+||+++..+|..+++.|++... . +|++|+++++|+|++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--R-VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--S-EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--e-EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3678899999999999999999999999994444 3 488899999999999999999999999999999999999998
Q ss_pred h
Q psy10684 172 L 172 (288)
Q Consensus 172 G 172 (288)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=144.60 Aligned_cols=117 Identities=19% Similarity=0.312 Sum_probs=104.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|...+..++.. ....++||||+....++.+...|...++.+..+||.++.++|.++++.|++ +.+.+ |++|+
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~v-LvaT~ 393 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE--GKIRV-LVATD 393 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC--CCCcE-EEEcc
Confidence 45677777776654 335699999999999999999999999999999999999999999999983 44555 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|+.++++||+|++|+++..|.|++||++|.|+.+.+
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE
Confidence 999999999999999999999999999999999999998765
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=144.74 Aligned_cols=117 Identities=17% Similarity=0.343 Sum_probs=104.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..+..++.. ....++||||+....++.+...|...++.+..+||++++++|+.+++.|+. +..+| |++|+
T Consensus 226 ~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~v-LVaTd 300 (460)
T PRK11776 226 PDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN--RSCSV-LVATD 300 (460)
T ss_pred cHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCcE-EEEec
Confidence 34477778777764 345789999999999999999999999999999999999999999999983 44555 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||.|.++..|.||+||++|.|+.+.+
T Consensus 301 v~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~a 342 (460)
T PRK11776 301 VAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLA 342 (460)
T ss_pred ccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceE
Confidence 999999999999999999999999999999999999998764
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=145.87 Aligned_cols=116 Identities=18% Similarity=0.354 Sum_probs=103.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..+..++.. ..+.++||||+....++.|...|...++.+..+||+++..+|.++++.|++ +.+.| |++|++
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~V-LVaTdv 316 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK--GQLEI-LVATDV 316 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEehh
Confidence 4466666666643 346799999999999999999999999999999999999999999999983 44555 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|||+..+++||+||.|+++..|.|++||++|.|..+..
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a 357 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA 357 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE
Confidence 99999999999999999999999999999999999998764
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=147.97 Aligned_cols=119 Identities=16% Similarity=0.283 Sum_probs=104.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh-cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW-RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~-~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
...|...+.+++........++|||++....++.+...|.. .++.+..+||++++++|..+++.|+. +.++| |++|
T Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~I-LVaT 425 (518)
T PLN00206 349 TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPV-IVAT 425 (518)
T ss_pred chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCE-EEEe
Confidence 44567777777775444456899999999999999999975 59999999999999999999999984 44455 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+|.++..|.|++||++|.|..+.+
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a 468 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA 468 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE
Confidence 9999999999999999999999999999999999999988765
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-17 Score=141.77 Aligned_cols=119 Identities=21% Similarity=0.355 Sum_probs=108.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.++.|+..+..+++.. ...+|+|||+....+.|.|...|.-.||..-.+||.-.+.+|+.+++.|+ .+.+++ |+.|
T Consensus 447 ~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrI-LvaT 522 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK--SGEVRI-LVAT 522 (629)
T ss_pred ccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh--cCceEE-EEEe
Confidence 4678888888887764 44689999999999999999999999999999999999999999999998 456666 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.+++||++...+||+|||+|-|-..|.||+||++|.|++++.
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 523 DLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred chhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999999999999999999999999999999999999875
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-16 Score=132.76 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=108.1
Q ss_pred cCchHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
...|-.+|..+|..... +...++||+|.+..+..|...|+..++....+|+.|++++|..++.+|+++ ..++ |++|
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~--~~~i-liaT 311 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN--AARI-LIAT 311 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc--CccE-EEEe
Confidence 55788899999998766 467899999999999999999999999999999999999999999999843 3444 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++++|||++.+.-|+|+|.|-+|..|.||.||+.|.|+.|.
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999999999999999875
|
|
| >KOG0383|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-16 Score=149.19 Aligned_cols=136 Identities=47% Similarity=0.703 Sum_probs=117.5
Q ss_pred ccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC--CccccccCchHHHHHHHHHHHHhCCCeEEE
Q psy10684 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTT--DEHLVFNSGKMVVLDKLLPKLKAQESRVLI 79 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~--~~~~~~~s~K~~~l~~ll~~~~~~~~kviI 79 (288)
++++|+..+..|+ +..++++.+|.||++|+|||+....++...... ...+...|+|+..|..+++.+...+++|+|
T Consensus 559 ~~t~n~~~l~~~~--~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~ 636 (696)
T KOG0383|consen 559 ILTRNWQGLLAGV--HQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLI 636 (696)
T ss_pred HHcCChHHHhhcc--hhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 5788999888744 677799999999999999999987333211110 112456899999999999999999999999
Q ss_pred EecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc
Q psy10684 80 FSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 140 (288)
Q Consensus 80 Fs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G 140 (288)
|+|+..++|+|+.++...+ .+.+++|..+...|+.++++|+.+.+.-.++|+||.+||.|
T Consensus 637 ~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 637 FSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999 99999999999999999999998888889999999999987
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=150.70 Aligned_cols=116 Identities=18% Similarity=0.336 Sum_probs=104.3
Q ss_pred ccCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC--------CCHHHHHHHHHhhcCCC
Q psy10684 55 FNSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ--------TAHEDRQRQINDFNMEG 124 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~--------~~~~~R~~~i~~F~~~~ 124 (288)
..++|+..|.++|+++. ..+.|+||||++..+++.|...|...|+++..++|. +++.+|.+++++|+.+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g- 422 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG- 422 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-
Confidence 35789999999999866 457899999999999999999999999999999997 8889999999999843
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
...+ |++|+++++|+|++.+++||+||++||+..+.|++||++|.|+
T Consensus 423 -~~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 423 -EFNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred -CCCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 4555 7899999999999999999999999999999999998888765
|
|
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-16 Score=146.03 Aligned_cols=121 Identities=38% Similarity=0.590 Sum_probs=107.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------cEEEEeeCCCCHHHHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------FKYCRLDGQTAHEDRQRQI 117 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------~~~~~~~G~~~~~~R~~~i 117 (288)
.++|+-.+++++++-..-++|+|||||....++.|++.|.++. ..+.+++|.++..+|++++
T Consensus 701 n~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLi 780 (1387)
T KOG1016|consen 701 NGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLI 780 (1387)
T ss_pred CCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHH
Confidence 4566666667776655668999999999999999999997763 4578999999999999999
Q ss_pred HhhcCCCCCee-EEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 118 NDFNMEGSDIF-IFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 118 ~~F~~~~~~~~-vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+ ..+++. .+++|+++|..|+||..|+++++||..|||....||+.|++|+||+++.
T Consensus 781 nqfN-~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 781 NQFN-SEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred Hhcc-CCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 9999 556666 8899999999999999999999999999999999999999999999874
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=142.32 Aligned_cols=114 Identities=20% Similarity=0.345 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
|...+..++.. ....++||||+....++.+...|...++++..+||++++++|.++++.|++ +.++| |++|++++
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~i-LVaTdv~~ 306 (456)
T PRK10590 232 KRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIRV-LVATDIAA 306 (456)
T ss_pred HHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcE-EEEccHHh
Confidence 34444444332 234699999999999999999999999999999999999999999999983 45555 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|+|++.+++||+||+|.++..|.|++||++|.|+++.+
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~a 345 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEA 345 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeE
Confidence 999999999999999999999999999999999998764
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-16 Score=142.18 Aligned_cols=153 Identities=17% Similarity=0.238 Sum_probs=125.9
Q ss_pred cccCchHHHHHHHHHHHHh---C----CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 54 VFNSGKMVVLDKLLPKLKA---Q----ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~---~----~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
+....|...|+++|..... + .++++||+...+.++.++..|...++++..+||..++.+|.+.++.|. ...
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr--~g~ 387 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFR--NGK 387 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhh--cCC
Confidence 3467899999999875441 1 248999999999999999999999999999999999999999999998 344
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcc
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKN 206 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (288)
+.+ |++|.++++|||+..+.|||+||.|-+-..|.|||||++|.|..+.....+.++...+...+.+++...+...+..
T Consensus 388 ~pv-lVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~w 466 (482)
T KOG0335|consen 388 APV-LVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQW 466 (482)
T ss_pred cce-EEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHH
Confidence 444 8999999999999999999999999999999999999999999988765555555555555556655555554444
Q ss_pred ccc
Q psy10684 207 YTE 209 (288)
Q Consensus 207 ~~e 209 (288)
+.+
T Consensus 467 l~~ 469 (482)
T KOG0335|consen 467 LSE 469 (482)
T ss_pred HHh
Confidence 443
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=131.54 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=102.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..+|.++...+ .-...||||+......+|...+...|..+..+||.+..++|..++++|+. +..+| |++|+
T Consensus 314 ~~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~--g~~kV-LitTn 388 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE--GKEKV-LITTN 388 (477)
T ss_pred hhhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc--CcceE-EEEec
Confidence 456777777754432 12478999999999999999999999999999999999999999999984 44455 89999
Q ss_pred cccccccccccceeEEecCCC------CcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLATADVVVLYDSDW------NPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~w------np~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
+++||+|...++.|||||.|- ++..|.|||||+||.|++|-+-
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 999999999999999999884 5789999999999999998764
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-16 Score=158.96 Aligned_cols=97 Identities=37% Similarity=0.573 Sum_probs=87.4
Q ss_pred hhhccccc--hhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccc
Q psy10684 186 SRYRAPFH--QLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT 260 (288)
Q Consensus 186 ~~~~~~~~--~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~ 260 (288)
.......+ +++++++...+.++.+. ..++.+++++|+++..+|+..+++|+ .++...|+++|++|||+|+|||+
T Consensus 703 ~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~-~~~~~~v~lls~kagg~glnLt~ 781 (866)
T COG0553 703 DKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSLKAGGLGLNLTG 781 (866)
T ss_pred HHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhh-cCCCCceEEEEecccccceeecc
Confidence 45556666 89999999988887775 33578999999999999999999999 66789999999999999999999
Q ss_pred cceEEEeCCCCChhhhhhhhhhh
Q psy10684 261 ADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 261 a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++||++||||||+++.||+|||
T Consensus 782 a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 782 ADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred cceEEEeccccChHHHHHHHHHH
Confidence 99999999999999999999999
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-15 Score=143.85 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=104.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...|..++.. ....++||||+....++.+...|...|+.+..+||.+++.+|.++++.|++ +.+.| |++|+
T Consensus 229 ~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~I-LVATd 303 (629)
T PRK11634 229 GMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD--GRLDI-LIATD 303 (629)
T ss_pred hhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC--CCCCE-EEEcc
Confidence 34677888777764 335689999999999999999999999999999999999999999999984 44444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+|.++..|.|++||++|.|+.+..
T Consensus 304 v~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred hHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 999999999999999999999999999999999999987653
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-15 Score=129.77 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=109.5
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
++.++.|+..|..+..++.- ...||||+++..++.|++.....|+++..+|..|.++.|.++...|. .+.|+. |+
T Consensus 303 fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr--~G~crn-LV 377 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR--NGKCRN-LV 377 (459)
T ss_pred eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh--ccccce-ee
Confidence 34578999999999887654 48999999999999999999999999999999999999999999998 455565 88
Q ss_pred ecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 133 STRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 133 s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++.--+|+|+++.+.|||||.|-|++.|.||+||.||.|.-+-.
T Consensus 378 ctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlA 422 (459)
T KOG0326|consen 378 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA 422 (459)
T ss_pred ehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceE
Confidence 999999999999999999999999999999999999999988754
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-15 Score=131.29 Aligned_cols=118 Identities=22% Similarity=0.349 Sum_probs=105.3
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
+...+|+-+|++.|. ....+|+||+.-...+|.|.++|--.|+..+.+||+..+++|...++.|+.+..+ | |+.
T Consensus 404 VkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--V-LVA 477 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--V-LVA 477 (610)
T ss_pred HHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--e-EEE
Confidence 446677777777664 4667999999999999999999999999999999999999999999999854444 3 899
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|++++.||++++..||||||.|-.-..|.|||||++|.|.++-.
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA 521 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA 521 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee
Confidence 99999999999999999999999999999999999999998754
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-15 Score=132.87 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=103.6
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..++..+..+|++...+ .|+|||+....+.......|+...+++..+||+.++..|.....+|....++ +|++|++
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDV 389 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDV 389 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecch
Confidence 34456777777764333 7999999999999999999999999999999999999999999999955555 4999999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++||+|++.++.|+.||+|-+|..|.||+||++|.|.+|.
T Consensus 390 aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 390 AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999999999999999999999999999999999988875
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-16 Score=138.19 Aligned_cols=100 Identities=26% Similarity=0.368 Sum_probs=86.1
Q ss_pred hccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceE
Q psy10684 188 YRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 264 (288)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v 264 (288)
..+...+++++.......+..+. ++++.+.+|||+++..+|+.+.+.|| .+++++|.++|++|+|+||++|+|+.|
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ-~seev~VAvlsItA~gvGLt~tAa~~V 566 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ-TSEEVRVAVLSITAAGVGLTLTAASVV 566 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc-cccceEEEEEEEeecccceeeeccceE
Confidence 44455556666655555554443 56899999999999999999999999 899999999999999999999999999
Q ss_pred EEeCCCCChhhhhhhhhhh--------hhhcC
Q psy10684 265 VLYDSDWNPQMDLQAMVRT--------VIAYF 288 (288)
Q Consensus 265 ~~~d~~wnp~~~~Qa~~Ra--------~~~~~ 288 (288)
++.+.+|||.+-.||.||| ++|||
T Consensus 567 VFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 567 VFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 9999999999999999999 77776
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-15 Score=103.70 Aligned_cols=81 Identities=27% Similarity=0.474 Sum_probs=73.3
Q ss_pred HHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHH
Q psy10684 89 ILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 89 ~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
.+...|...++++..+||+++.++|..+++.|+++. . .+|++|.+++.|+|++.+++||+++++|++..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK--I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC--C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 466778888999999999999999999999998433 3 4588999999999999999999999999999999999999
Q ss_pred HHHh
Q psy10684 169 AKIL 172 (288)
Q Consensus 169 ~R~G 172 (288)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9976
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=129.34 Aligned_cols=117 Identities=16% Similarity=0.295 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
...|...++++|.. ...+|+|||.......+.....+... .++.+.+||.|++..|.+++..|.+...+ +|++
T Consensus 239 a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~---vl~~ 313 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG---VLFC 313 (567)
T ss_pred HHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc---eEEe
Confidence 55688888888876 44679999999888888888777654 78899999999999999999999953443 4899
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|+++++|||+++.+.||.||||-+|+...||.||++|.|+.|..
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~A 357 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNA 357 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccce
Confidence 99999999999999999999999999999999999999999874
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=135.49 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
+..+.+.+.. ...+.+.||||+....++.+...|...|+++..+||+++.++|..+++.|. .+.+.| |++|++.++
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~--~g~~~v-LVaT~~~~~ 288 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ--RDEIQV-VVATVAFGM 288 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH--cCCCcE-EEEechhhc
Confidence 3344444432 134567799999999999999999999999999999999999999999998 345555 889999999
Q ss_pred cccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 140 GINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|+|++++++||++++|.++..|.|++||++|.|+.+..
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~ 326 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSEC 326 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceE
Confidence 99999999999999999999999999999999988653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-16 Score=152.47 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=82.0
Q ss_pred hhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 194 QLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 194 ~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
+++++++...+.++.+- ..++.+.+++|.++...|.+.+..|. +++.+.|+++|++|||+|||||+|+||+++|||
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 67777777777666663 56899999999999999999999999 999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhh
Q psy10684 271 WNPQMDLQAMVRT 283 (288)
Q Consensus 271 wnp~~~~Qa~~Ra 283 (288)
|||++|+||||||
T Consensus 620 wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 620 WNPAVEEQAIDRA 632 (674)
T ss_pred cChHHHHHHHHHH
Confidence 9999999999999
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-14 Score=127.12 Aligned_cols=118 Identities=19% Similarity=0.384 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeC--------CCCHHHHHHHHHhhcCCC
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDG--------QTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G--------~~~~~~R~~~i~~F~~~~ 124 (288)
.-||+..+.+++++.. ..+.++|||++++++.+.|...|...++... ++-| +|++++..+++++|+.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-- 423 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-- 423 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--
Confidence 5789999999999865 4468999999999999999999999988765 6655 4899999999999984
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+...| |++|.+|-+|||++.++.||+|||.-+|-...||+||+||- +.|.|
T Consensus 424 Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 424 GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred CCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 45555 89999999999999999999999999999999999999987 55543
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=135.83 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
+...+...+.. ..+.++||||+....++.+...|...|+++..+||+++.++|.++++.|.. +.+.| |++|.+.+
T Consensus 223 ~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~--g~~~V-LVaT~a~~ 297 (607)
T PRK11057 223 PLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR--DDLQI-VVATVAFG 297 (607)
T ss_pred hHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC--CCCCE-EEEechhh
Confidence 44444444432 346799999999999999999999999999999999999999999999984 44455 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|+|+++++.||+||+|.++..|.|++||++|.|..+.
T Consensus 298 ~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999999999999999999997754
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-14 Score=128.04 Aligned_cols=114 Identities=20% Similarity=0.334 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
|...+..++.. ....++||||+....++.+...|...++.+..+||+++.++|..+++.|++ +.++| |++|++.+
T Consensus 254 ~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~v-LvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRV-LITTDLLA 328 (401)
T ss_pred HHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCE-EEEccccc
Confidence 44444444432 235689999999999999999999999999999999999999999999983 45555 89999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|+|++.+++||++|+|.++..+.|++||++|.|..+.+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~ 367 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVA 367 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceE
Confidence 999999999999999999999999999999999988765
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-14 Score=134.38 Aligned_cols=114 Identities=17% Similarity=0.281 Sum_probs=95.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.++..+++.....++|+||||++...++.+...| + ...++|+++..+|.+++++|+ ..+.+.+ |+.++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr-~~~~i~v-Lv~Sk 550 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQ-HNPKVNT-IFLSK 550 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHH-hCCCccE-EEEec
Confidence 456778877787754457899999999999888888777 3 345899999999999999998 3345566 55569
Q ss_pred cccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|++|+|++.|+.||++++++ ++..+.||+||+.|.+..+.
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc
Confidence 999999999999999999986 99999999999999987654
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=138.39 Aligned_cols=72 Identities=40% Similarity=0.754 Sum_probs=66.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCC--CeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGS--DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~--~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
.|..|-+|||++....|++..++|| +.. ..++||||++||++|+||.|||+||++|-.|||.-+.|+|-|+|
T Consensus 1187 ~GkDyyriDGst~s~~R~k~~~~FN-dp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvy 1260 (1567)
T KOG1015|consen 1187 RGKDYYRLDGSTTSQSRKKWAEEFN-DPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVY 1260 (1567)
T ss_pred cCCceEEecCcccHHHHHHHHHHhc-CcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHH
Confidence 3678999999999999999999999 433 46689999999999999999999999999999999999999994
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-14 Score=129.55 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=121.0
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCccccc--cCc---------hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH
Q psy10684 26 MQLRKCSNHPYLFDGAEPGPPYTTDEHLVF--NSG---------KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~--~s~---------K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l 94 (288)
.+|.+....|.|+.-....+.......++. .|+ |+..|-.+++.+. -...||||....-++-++.+|
T Consensus 215 n~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L 292 (980)
T KOG4284|consen 215 NLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHL 292 (980)
T ss_pred HHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHh
Confidence 346677778888876655544444444332 455 7777777776543 358999999999999999999
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
...|+++..+.|.|++.+|.-+++..+ .-.++| |++|+..++|+|-..+|-|||+|+|-|..+|.|||||++|.|..
T Consensus 293 ~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~ 369 (980)
T KOG4284|consen 293 KSSGLDVTFISGAMSQKDRLLAVDQLR--AFRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH 369 (980)
T ss_pred hccCCCeEEeccccchhHHHHHHHHhh--hceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccccc
Confidence 999999999999999999999999987 345565 89999999999999999999999999999999999999999988
Q ss_pred cch
Q psy10684 175 GSI 177 (288)
Q Consensus 175 ~~v 177 (288)
|-.
T Consensus 370 G~a 372 (980)
T KOG4284|consen 370 GAA 372 (980)
T ss_pred cee
Confidence 753
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=130.17 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=100.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.+|.++++.....+..+||||++....+.+...|...|+++..+||.++ +|+..+..|...... ++++|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 456899999999887666788999999999999999999999999999999865 555556666522332 489999
Q ss_pred ccccccccc---ccc-----eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA---TAD-----VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~---~a~-----~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. .+. |||++|.|-++..|.|++||++|.|..|..
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 999999998 443 999999999999999999999999999876
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=133.19 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--------CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 64 DKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--------GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--------~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+++..+...+.++||||+++..++.+...|... +.++..+||++++++|.++.++|+ ++.+++ |++|+
T Consensus 261 ~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~--~G~i~v-LVaTd 337 (742)
T TIGR03817 261 ADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR--DGELLG-VATTN 337 (742)
T ss_pred HHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH--cCCceE-EEECc
Confidence 3444444456789999999999999999887653 567789999999999999999998 455555 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.++|+|+...++||+++.|-+...|.|++||++|.|+.+.+
T Consensus 338 ~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~a 379 (742)
T TIGR03817 338 ALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALV 379 (742)
T ss_pred hHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEE
Confidence 999999999999999999999999999999999999987653
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=132.18 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=101.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.+.+.. ..+.+.||||+....++.+...|...|+++..+||+++.++|..+++.|.. +.+.| |++|.
T Consensus 208 ~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~--g~~~v-lVaT~ 282 (591)
T TIGR01389 208 KNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY--DDVKV-MVATN 282 (591)
T ss_pred CCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcE-EEEec
Confidence 34566667776654 236799999999999999999999999999999999999999999999984 34444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.+.|+|++.++.||++++|.++..|.|++||++|.|+.+.
T Consensus 283 a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~ 323 (591)
T TIGR01389 283 AFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAE 323 (591)
T ss_pred hhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCce
Confidence 99999999999999999999999999999999999997653
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=121.80 Aligned_cols=119 Identities=20% Similarity=0.343 Sum_probs=94.7
Q ss_pred cCchHH--HHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHH----hh------------------cCcEEEEeeCCCC
Q psy10684 56 NSGKMV--VLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYC----YW------------------RGFKYCRLDGQTA 109 (288)
Q Consensus 56 ~s~K~~--~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l----~~------------------~~~~~~~~~G~~~ 109 (288)
-.+|+. +|..+|..... ...|+|||.+..++++.=...| .. .+.++.++||+|+
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 355655 56666665432 3468899988888876544333 22 1357899999999
Q ss_pred HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 110 HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 110 ~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|...+..|...... +|++|++++|||||+.+..||-||+|..++.|.||+||+.|+|..|..
T Consensus 483 QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~a 547 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEA 547 (708)
T ss_pred HHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCce
Confidence 99999999999843332 589999999999999999999999999999999999999999999864
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=131.86 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=104.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
....|..++.+.+......+.++||||++....+.+...|...|+++..+||.++..++..+...++ .+ . ++++|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~--~g--~-VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQ--KG--A-VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCC--CC--e-EEEEc
Confidence 3567999999999877677899999999999999999999999999999999998888877777765 22 3 48999
Q ss_pred ccccccccc---cccc-----eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINL---ATAD-----VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl---~~a~-----~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.+|||+|+ +.++ |||++|.|-|+..|.|++||++|.|+.|..
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999 4777 999999999999999999999999999865
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-14 Score=136.20 Aligned_cols=141 Identities=22% Similarity=0.186 Sum_probs=116.3
Q ss_pred cCchHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.++|+..+...+..+.- ..+|+|+|++|...+|.++..+..+++.+....+ . ++-...+..|+ ++.||++.
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk----~I~clll~ 1273 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFK----SIDCLLLF 1273 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhcc----cceEEEEE
Confidence 46788888776665543 3589999999999999999999999998755544 3 56667888887 38899999
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhhhhccCC
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRIAYGANK 203 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (288)
+..++-||||..|.||++.+|--||+.+.||+||+||+||++++ .+++++.+..+....+..........
T Consensus 1274 ~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~~~~~~ 1350 (1394)
T KOG0298|consen 1274 VSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTKSTSWD 1350 (1394)
T ss_pred eccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999985 57788888777766666655444433
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=135.57 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=93.7
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d 153 (288)
+.+.||||.....++.+...|...|+.+..+||+++.++|..+++.|.. +.++| |++|.+.++|+|+++++.||+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~--Gei~V-LVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK--DEINI-ICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc--CCCcE-EEEechhhcCCCccCCcEEEEcC
Confidence 4689999999999999999999999999999999999999999999984 44555 88999999999999999999999
Q ss_pred CCCCcchhhhhhHHHHHHhhhcch
Q psy10684 154 SDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 154 ~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|.++..|.|++||+||.|+.+..
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~c 780 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSC 780 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceE
Confidence 999999999999999999987654
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-13 Score=126.73 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=117.2
Q ss_pred HHHHhhcCCCCCCCCCCCC-CCCCCCcccc-ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPG-PPYTTDEHLV-FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~-~~~~~~~~~~-~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-.. ...+....++ ....|+.++.+.+.+....+..+||||++....+.+...|...|+++..
T Consensus 355 ~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred HHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 3466666666554332221 1122222222 2346888998888888888999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc-------cceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 104 LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT-------ADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 104 ~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~-------a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+||. +.+|+..+..|..... . ++++|+.+|||+|+.. .-|||+++.|-++..+.|+.||++|.|..|.
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g--~-VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKG--A-VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCc--e-EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 9998 6899999999973322 3 4899999999999998 6799999999999999999999999999997
Q ss_pred h
Q psy10684 177 I 177 (288)
Q Consensus 177 v 177 (288)
.
T Consensus 510 s 510 (745)
T TIGR00963 510 S 510 (745)
T ss_pred e
Confidence 4
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-13 Score=124.48 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=102.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...+...+.+++..+...+.+++||+..++.++.|.+.|...|+++..+||+++.++|..+++.|+ .+...|++.+.+
T Consensus 326 ~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~--~~~~~vLvaT~~ 403 (501)
T PHA02558 326 HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAE--GGKGIIIVASYG 403 (501)
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHh--CCCCeEEEEEcc
Confidence 344556666677666667789999999999999999999999999999999999999999999997 344566666679
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
..++|+|++.+++||++.|+.+...+.|++||++|.+..++
T Consensus 404 ~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 404 VFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred eeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999999999999999999999886553
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-13 Score=123.05 Aligned_cols=132 Identities=17% Similarity=0.282 Sum_probs=112.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..|++-|...... .|+|||..-....+.|+..|...++++..+||++.+.+|.+.+..|+... +.| |+.|+
T Consensus 451 ~~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~--~~V-lvatD 526 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR--KPV-LVATD 526 (731)
T ss_pred cHHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC--Cce-EEEee
Confidence 456888888777665443 49999999999999999999999999999999999999999999998433 333 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAP 191 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~ 191 (288)
++++||++....+|+|||.--+-.++.|+|||.+|.|-++..-..|+++-.++...
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGH 582 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhH
Confidence 99999999999999999999999999999999999999987665555555444433
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-13 Score=121.37 Aligned_cols=112 Identities=20% Similarity=0.320 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
+-..|..++.+.- ..++|||.+....+..+.-.|.-.|+++..+||+.++++|.+.++.|+ +..+.| |++|++++
T Consensus 413 Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk--~~eidv-LiaTDvAs 487 (691)
T KOG0338|consen 413 REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK--KEEIDV-LIATDVAS 487 (691)
T ss_pred cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH--hccCCE-EEEechhh
Confidence 3344555555433 468999999999999999999999999999999999999999999998 455555 89999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
+||++.++..||||+.|-....|.||+||+.|.|+.|
T Consensus 488 RGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 488 RGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred ccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 9999999999999999999999999999999999875
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-13 Score=118.04 Aligned_cols=118 Identities=21% Similarity=0.329 Sum_probs=104.9
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..|..+.+ +-...+||++..+-++.+...|..+++....+||.+.+.+|...+..|+++.+ +| |++++.
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss--rv-lIttdl 322 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS--RV-LITTDL 322 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc--eE-Eeeccc
Confidence 347777777766 44689999999999999999999999999999999999999999999985444 44 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
.++|++++.++-||+||.|-+...|.+++||++|.|+++.+-..+
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v 367 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFV 367 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeee
Confidence 999999999999999999999999999999999999999764433
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=124.02 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||++....+.+...|...|+++..+||.+.+++|..+...|+ .+ . ++++|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~--~g--~-VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ--KG--A-VTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC--CC--e-EEEEcc
Confidence 557999999999887788899999999999999999999999999999999999888877766665 22 3 489999
Q ss_pred ccccccccc---------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA---------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~---------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. +.++|+++++|-+. .+.|+.||++|.|..|..
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeE
Confidence 999999999 88999999998665 449999999999999875
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=114.29 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=104.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.-..|+.+|...|+. ....|.|||.++...+..+...+... |++...+||.|++..|.++...|.. .-.++|+
T Consensus 296 ~l~~Ki~~L~sFI~s--hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~---~~~~vLF 370 (758)
T KOG0343|consen 296 PLEDKIDMLWSFIKS--HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR---KRAVVLF 370 (758)
T ss_pred ehhhHHHHHHHHHHh--ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH---hcceEEE
Confidence 356799999999886 33569999999999999999888764 9999999999999999999999982 2345699
Q ss_pred ecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 133 STRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 133 s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|+++++||+++.++.||.+|.|-+-..|.||+||+.|.+..|.
T Consensus 371 ~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~ 414 (758)
T KOG0343|consen 371 CTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGE 414 (758)
T ss_pred eehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCc
Confidence 99999999999999999999999999999999999999998875
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-13 Score=120.22 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=91.0
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 154 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~ 154 (288)
.+.||||+..+.+..|...|...+|+...+|.+|.+++|.+.+++|.+.. ..+|++|++++||||++.+.|||+|..
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeec
Confidence 48999999999999999999999999999999999999999999998432 235999999999999999999999999
Q ss_pred CCCcchhhhhhHHHHHHhhhc
Q psy10684 155 DWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 155 ~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
|-...+|.||-||+.|.+..|
T Consensus 541 PrtseiYVHRSGRTARA~~~G 561 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEG 561 (731)
T ss_pred CCccceeEecccccccccCCC
Confidence 999999999999999998765
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=121.79 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=114.7
Q ss_pred HHHhhcCCCCCCCCCCCCC-CCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPGP-PYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~~-~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|+++.+-+.+.-+.-... ..+.... ......|..++.+.+......+..+||||++....+.|...|...|+++..+
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~L 470 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVL 470 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEe
Confidence 4666666665553322211 1111111 1224568999999998877889999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc---ccc-----eeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA---TAD-----VVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~---~a~-----~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
||.....++.-+...++ .+. ++++|+.+|||.|+. .+. |||+++.|-++..+.|+.||++|.|..|.
T Consensus 471 na~~~~~Ea~ii~~ag~--~g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~ 545 (796)
T PRK12906 471 NAKNHAKEAEIIMNAGQ--RGA---VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGS 545 (796)
T ss_pred cCCcHHHHHHHHHhcCC--Cce---EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcc
Confidence 99998666666666665 222 489999999999995 667 99999999999999999999999999997
Q ss_pred h
Q psy10684 177 I 177 (288)
Q Consensus 177 v 177 (288)
.
T Consensus 546 s 546 (796)
T PRK12906 546 S 546 (796)
T ss_pred e
Confidence 5
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=115.70 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=103.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH-hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC-YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l-~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.-+|+-++.+++... -...++||.|+.+.+..|...| ...++....+||..++.+|.+.+++|+ .+.+-| |++|
T Consensus 371 e~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR--~g~Iwv-LicT 445 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR--IGKIWV-LICT 445 (593)
T ss_pred chhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh--ccCeeE-EEeh
Confidence 456777777777653 3468999999999999999999 677999999999999999999999998 455666 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++.++|+|+.+++.|||||.|-.-..|.|++||++|.|+.+..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce
Confidence 9999999999999999999999999999999999999998753
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-12 Score=112.49 Aligned_cols=149 Identities=20% Similarity=0.213 Sum_probs=113.8
Q ss_pred HHHHHhh-cCCCCCCCCCCCCCC-CCCCccc---cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc
Q psy10684 25 LMQLRKC-SNHPYLFDGAEPGPP-YTTDEHL---VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF 99 (288)
Q Consensus 25 l~~Lrq~-~~hP~l~~~~~~~~~-~~~~~~~---~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~ 99 (288)
+..|+++ |..|.++.-.+...+ .+...+. ..+..|...+..+++.-.- ..|+|||.+..+.+=.|.-.|+.-|+
T Consensus 215 v~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGi 293 (569)
T KOG0346|consen 215 VQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGI 293 (569)
T ss_pred HHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCc
Confidence 4567775 466777654333322 1111121 2245677777777774222 35999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc-----------------------------------ccccccccc
Q psy10684 100 KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR-----------------------------------AGGLGINLA 144 (288)
Q Consensus 100 ~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~-----------------------------------~~~~Glnl~ 144 (288)
+.|.++|.++..-|.-++++||. +-..+ ++.|+ -.+||+|++
T Consensus 294 ksciLNseLP~NSR~Hii~QFNk--G~Ydi-vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~ 370 (569)
T KOG0346|consen 294 KSCILNSELPANSRCHIIEQFNK--GLYDI-VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFH 370 (569)
T ss_pred HhhhhcccccccchhhHHHHhhC--cceeE-EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccch
Confidence 99999999999999999999983 33333 45544 136899999
Q ss_pred ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 145 TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 145 ~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++.|+|||.|-++..|.||+||+.|-|.+|++
T Consensus 371 ~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta 403 (569)
T KOG0346|consen 371 HVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA 403 (569)
T ss_pred heeeeeecCCCCchHHHHHhccccccCCCCCce
Confidence 999999999999999999999999999999875
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=115.26 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
|-.++..+|.. .+..++|+|+++.+....+...|+ ..++++-.++|..+.+.|.+.+++|. .+++.+ |+++
T Consensus 416 kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~--~g~i~v-LIcS 490 (620)
T KOG0350|consen 416 KPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFA--KGDINV-LICS 490 (620)
T ss_pred chHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHh--cCCceE-EEeh
Confidence 33455566654 456799999999999888887776 34677777999999999999999998 455555 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++.+||+|+.+.+.||+||+|.....|.||+||+.|.||.|.+
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE
Confidence 9999999999999999999999999999999999999999975
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=124.45 Aligned_cols=109 Identities=20% Similarity=0.164 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc------CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR------GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~------~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+...+..+...+.++||||+....++.+...|... +..+..+||+++.++|..+.+.|++ +.+++ |++|
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~--G~i~v-LVaT 347 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR--GELKV-VVSS 347 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc--CCCeE-EEEC
Confidence 3445556555566789999999999999999988763 4678899999999999999999983 44555 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
++.++|+|+...++||++++|.+...+.|++||+||.+
T Consensus 348 s~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 348 TSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred ChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999999999999999999999864
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=118.94 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=103.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..++..|.+.|..+...+.++||||.....++.|...|...|+++..+||.++..+|..++..|. .+.+.| +++++.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~v-lV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDV-LVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH--cCCceE-EEEeCH
Confidence 45678888888888888999999999999999999999999999999999999999999999997 344544 789999
Q ss_pred ccccccccccceeEEecC-----CCCcchhhhhhHHHHHHhhhcc
Q psy10684 137 GGLGINLATADVVVLYDS-----DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~-----~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
.++|++++.++.||++|. |-++..|.|++||++|. ..|.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~ 549 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGK 549 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCE
Confidence 999999999999999996 56888999999999994 5554
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=118.80 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=102.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+..+||||++....+.|...|...|+++..+|+ .+.+|+..+..|..... . ++++|+
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g--~-VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG--A-VTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC--e-EEEecc
Confidence 346999999999988888999999999999999999999999999999998 56899999999983322 2 489999
Q ss_pred cccccccccccc--------eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~--------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+.... +||..+.+-+...+.|++||++|.|..|..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999999443 448899999999999999999999999975
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=110.72 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc--EEEEeeCCCCHHHHHHH----HHhhcCCCCCeeEEE
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF--KYCRLDGQTAHEDRQRQ----INDFNMEGSDIFIFM 131 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~--~~~~~~G~~~~~~R~~~----i~~F~~~~~~~~vll 131 (288)
.|...+..+++. ...+.++|||++..+.++.+...|...+. .+..+||+++..+|.+. ++.|.+ +...+ |
T Consensus 207 ~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~i-l 282 (358)
T TIGR01587 207 GEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFV-I 282 (358)
T ss_pred cCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeE-E
Confidence 566666666654 34568999999999999999999988765 58999999999999764 889983 34344 8
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++|++.++|+|+. ++.||+++.| +..+.|++||++|.|+..
T Consensus 283 vaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 283 VATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred EECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCC
Confidence 8999999999995 8888888765 788999999999999754
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=118.13 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=103.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
..+++..|.+.|+....++.++||||.....++.|...|...|+++..+||.++..+|.+++..|. .+.+.| |++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~V-LV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR--LGEFDV-LVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh--cCCceE-EEEcC
Confidence 345778888888887788999999999999999999999999999999999999999999999997 345555 78999
Q ss_pred cccccccccccceeEEec-----CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYD-----SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d-----~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
..++|++++.++.|+++| .|-+...+.|++||++|. ..|.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~ 545 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGK 545 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCE
Confidence 999999999999999999 567888999999999997 4554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-12 Score=122.12 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=106.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+..|.++|.+..+ +.++|||++....+|.+...|.+.|+++..+||..++.+|...++.|++ +...||+.|+
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~---~~~~LLvaTs 671 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN---GVVNLLVATS 671 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc---cCceEEEehh
Confidence 67899999999998655 6799999999999999999999999999999999999999999999983 2334589999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.++||+......||+||.|-....|.||.||++|.|+++.
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~ 712 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGA 712 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccce
Confidence 99999999999999999999888889999999999998875
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=116.78 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=89.1
Q ss_pred hHHHHHHHHHH-HHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHH-----HHHHhhcC----CC----
Q psy10684 59 KMVVLDKLLPK-LKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQ-----RQINDFNM----EG---- 124 (288)
Q Consensus 59 K~~~l~~ll~~-~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~-----~~i~~F~~----~~---- 124 (288)
|+..+...+.. ....+.++||||+.+..++.+.+.|...++ ..+||.+++.+|. +++++|+. +.
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 44444444333 234567999999999999999999998887 8999999999999 78999984 11
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
.+-..+|++|+++++|||+.. ++||++..| ...|.||+||++|.|+.+
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 011345899999999999986 899987766 478999999999999853
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-12 Score=87.63 Aligned_cols=71 Identities=27% Similarity=0.513 Sum_probs=63.1
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
..++.+..++|+++..+|+..+++|+ +... .+|+++.+++.|+|++.+++|++++++|||....|+++||.
T Consensus 5 ~~~~~~~~i~~~~~~~~r~~~~~~f~--~~~~-~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 5 KKGIKVAIIHGDMSQKERQEILKKFN--SGEI-RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAG 75 (78)
T ss_dssp HTTSSEEEESTTSHHHHHHHHHHHHH--TTSS-SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSS
T ss_pred HCCCcEEEEECCCCHHHHHHHHHHhh--ccCc-eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCC
Confidence 45788999999999999999999999 3333 45556699999999999999999999999999999999984
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.4e-11 Score=118.24 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=91.0
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..++.+++|||+..+.++.+...|+.. ++++..+||.|+.++|.+++++|.+ ++..| |++|++.++|+|++.+++
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~I-LVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQV-LVCTTIIETGIDIPNANT 733 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCE-EEECChhhcccccccCCE
Confidence 345789999999999999999999874 7899999999999999999999984 44444 899999999999999999
Q ss_pred eEEecCCC-CcchhhhhhHHHHHHhhhcch
Q psy10684 149 VVLYDSDW-NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 149 vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~v 177 (288)
||+++.+. ..+.+.|++||++|.|+.+.+
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR~g~~g~a 763 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGRSKKKAYA 763 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCCCCCCeEE
Confidence 99999864 556788999999999987653
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=104.17 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=89.7
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
-+|+||||.....+|-|++++... .+.++.+||...+.+|.+.++.|+. ..++ +|++|+++++||++++...+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvk-flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVK-FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeE-EEEEehhhhccccccCCceEE
Confidence 479999999999999999999887 3789999999999999999999983 3343 599999999999999999999
Q ss_pred EecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 151 LYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 151 ~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++..|-+-..|.|||||++|.-+.+-
T Consensus 582 nvtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred EEecCcccchhhhhhhccchhhhcce
Confidence 99999999999999999998877653
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=111.69 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=93.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchH--------HHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTR--------MLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGS 125 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~--------~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~ 125 (288)
...+...+.+.+......+++++|||+..+ ....+.+.|... ++++..+||+++.++|.+++++|.+ +
T Consensus 453 ~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g 530 (681)
T PRK10917 453 PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--G 530 (681)
T ss_pred CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--C
Confidence 344555566666665677899999998532 234455556554 5789999999999999999999984 4
Q ss_pred CeeEEEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcc
Q psy10684 126 DIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 126 ~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.+| |++|++.++|+|+++++.||+++++. ..+.+.|+.||++|.|.++.
T Consensus 531 ~~~I-LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 581 (681)
T PRK10917 531 EIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSY 581 (681)
T ss_pred CCCE-EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceE
Confidence 4455 89999999999999999999999985 45778899999999987664
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-11 Score=117.35 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=72.3
Q ss_pred cchhhhhhccCCCccccc----ccchhhhcccCCCccccchhHHHhhcccCC-CCeeEEEEeecccccCCCccccceEEE
Q psy10684 192 FHQLRIAYGANKGKNYTE----EEDRYLYCRLDGQTAHEDRQRQINDFNMEG-SDIFIFMLSTRAGGLGINLATADVVVL 266 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~~e----~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~-~~~~v~l~s~~agg~glnl~~a~~v~~ 266 (288)
.++++++..........+ +..|+....++|+++..+|+++++.|+ .. .+..|++ ++.+||.|+|++.|++||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~-~~~~~~~VLI-sTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA-DEEDGAQVLL-CSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh-cCCCCccEEE-echhhccCCCcccccEEEE
Confidence 445566554444333333 234889999999999999999999999 44 3566655 5599999999999999999
Q ss_pred eCCCCChhhhhhhhhhh
Q psy10684 267 YDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 267 ~d~~wnp~~~~Qa~~Ra 283 (288)
||+||||....|+++|+
T Consensus 571 fDlP~nP~~~eQRIGR~ 587 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRL 587 (956)
T ss_pred ecCCCCHHHHHHHhccc
Confidence 99999999999999998
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=117.42 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccc
Q psy10684 65 KLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN 142 (288)
Q Consensus 65 ~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gln 142 (288)
.++.++. ++.+++||++....++.+...|... ++++..+||+|++++|.+++.+|.+ +++.| |++|++.++|+|
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~V-LVaTdIierGID 876 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNV-LVCTTIIETGID 876 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCE-EEECchhhcccc
Confidence 3344433 4679999999999999999999887 7889999999999999999999984 44555 889999999999
Q ss_pred ccccceeEEecCC-CCcchhhhhhHHHHHHhhhcc
Q psy10684 143 LATADVVVLYDSD-WNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 143 l~~a~~vi~~d~~-wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++.+++||+.+++ ++.+.+.|++||+||.|+++.
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~ 911 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceE
Confidence 9999999987664 577789999999999987753
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-10 Score=109.19 Aligned_cols=116 Identities=12% Similarity=0.183 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecch--------HHHHHHHHHHhh--cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCee
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMT--------RMLDILEDYCYW--RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIF 128 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~--------~~~~~l~~~l~~--~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~ 128 (288)
+...+.+.+.+....+.+++|||... ..+..+...|.. .++++..+||+++.++|.++++.|++ +..+
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ 510 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVD 510 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCC
Confidence 33555555655556788999999765 234445555554 37889999999999999999999984 4444
Q ss_pred EEEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcch
Q psy10684 129 IFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 129 vll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~v 177 (288)
| |++|++.++|+|+++++.||+++++. +.+.+.|+.||++|.|+++.+
T Consensus 511 I-LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 559 (630)
T TIGR00643 511 I-LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYC 559 (630)
T ss_pred E-EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEE
Confidence 4 88999999999999999999999885 567788999999999877643
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=117.41 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=84.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcC---------------------------------cEEEEeeCCCCHHHHHHHHH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRG---------------------------------FKYCRLDGQTAHEDRQRQIN 118 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~G~~~~~~R~~~i~ 118 (288)
..+.++|||++++..++.+...|+... +.+..+||+++.++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 346799999999999999998887531 12457889999999999999
Q ss_pred hhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 119 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 119 ~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
.|+ ++.+++ |++|++..+|+|+..++.||+++.|.+...+.|++||++|.
T Consensus 322 ~fK--~G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALK--SGELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHH--hCCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 998 345565 89999999999999999999999999999999999999985
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-10 Score=104.22 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=92.0
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d 153 (288)
+...||||.++..++.+++.|...|+....|||+++.++|+.+-++|..+ +++| +++|.|-|.|+|-++...||+||
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~--~~~i-iVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND--EIKV-MVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC--CCcE-EEEeccccCccCCCCceEEEEec
Confidence 45689999999999999999999999999999999999999999999843 3344 88999999999999999999999
Q ss_pred CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 154 SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 154 ~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|-+...|-|-+||+||-|....
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~ 329 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAE 329 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcce
Confidence 99999999999999999997643
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=108.82 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=82.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
.+.++|||++....++.+.+.|... ++.+..+||++++. ++.+++|. .++..+| |++|+.+++|++++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff-~~gk~kI-LVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVY-SSKNPSI-IISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHh-ccCceeE-EeccChhhccccccCeeEEE
Confidence 3568999999999999999999887 79999999999864 56778874 2344555 89999999999999999999
Q ss_pred Eec---CC---------CCcchhhhhhHHHHHHhhhcch
Q psy10684 151 LYD---SD---------WNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 151 ~~d---~~---------wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++ .| .+.+.+.||.||+||. +.|.+
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c 507 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTY 507 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeE
Confidence 997 22 2566788999999998 56654
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-10 Score=101.18 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=116.7
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCcc---ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 28 LRKCSNHPYLFDGAEPGPPYTTDEH---LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 28 Lrq~~~hP~l~~~~~~~~~~~~~~~---~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
-|+-..||.++.-.-...-.+..+. ......|..+|+.++..... +++.+||+....-++.+...|...|+.+..+
T Consensus 213 akaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~i 291 (529)
T KOG0337|consen 213 AKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDI 291 (529)
T ss_pred HHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCcccc
Confidence 4455578888763221111122222 23456788888888776443 4689999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.|++.+..|...+..|+....+ +|+.|++|++|++++..+.|||||.|-++..+.||+||+.|.|+++..
T Consensus 292 ysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~a 361 (529)
T KOG0337|consen 292 YSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRA 361 (529)
T ss_pred ccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceE
Confidence 9999999999999999843333 489999999999999999999999999999999999999999999863
|
|
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-10 Score=109.92 Aligned_cols=71 Identities=46% Similarity=0.786 Sum_probs=66.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCee-EEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIF-IFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~-v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
...|.+++|.++..+|.++|..|+ +.+.+. .|++|++||..|+||..||+++++|.-|||-...||++|.|
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN-~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvy 832 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFN-SEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVY 832 (1387)
T ss_pred ccceecccCCcccchHHHHHHhcc-CCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhh
Confidence 467889999999999999999999 566555 89999999999999999999999999999999999999986
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=107.73 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.+.++|||++....++.+...|.. .++.++.+||+++.++|.++++.|. ++..+| |++|+++.+||++.++++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~--~G~rkV-lVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDP--QGRRKV-VLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcc--cCCeEE-EEecchHhhcccccCceEE
Confidence 357899999999999999999987 4799999999999999999999997 334455 8899999999999999999
Q ss_pred EEecCC----CCcch--------------hhhhhHHHHHHhhhcc
Q psy10684 150 VLYDSD----WNPQM--------------DLQAMVREAKILRRGS 176 (288)
Q Consensus 150 i~~d~~----wnp~~--------------~~Qa~~R~~R~Gq~~~ 176 (288)
|+++.+ +||.. +.||.||+||. +.|.
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~ 328 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGV 328 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCE
Confidence 999876 45544 67888888887 4544
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=105.09 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=115.9
Q ss_pred HHHHhhcCCCCCCCCCCCCC-CCCCCccc-cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPGP-PYTTDEHL-VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~-~~~~~~~~-~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-... ..+....+ .....|+.++.+.+.+....+..|||||++....+.|...|...|+++..
T Consensus 380 ~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 380 EEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 45667776666554332211 11111122 23456999999999888888999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc--------------------------------------
Q psy10684 104 LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT-------------------------------------- 145 (288)
Q Consensus 104 ~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~-------------------------------------- 145 (288)
+||. +.+|+..+..|..... . ++++|+.+|||+|+.-
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g--~-VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPG--A-VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCc--e-EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9996 6799999999983322 3 4899999999999874
Q ss_pred cceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 146 ADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 146 a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.=|||--+.+-|...+.|..||++|.|..|+.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 45889999999999999999999999999875
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=102.68 Aligned_cols=116 Identities=20% Similarity=0.301 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeC--------CCCHHHHHHHHHhhcC
Q psy10684 56 NSGKMVVLDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDG--------QTAHEDRQRQINDFNM 122 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G--------~~~~~~R~~~i~~F~~ 122 (288)
..+|+..|.+.+.+.... +.++|||+.++..++.|..+|.. .|+....+-| +|++.+.++.+++|++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 578999999988875443 57999999999999999988872 2556555555 5888999999999984
Q ss_pred CCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 123 EGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 123 ~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
+.+.| |++|.+|-+|||+..++-||.||..-||-...||+|| +|.-..+
T Consensus 473 --G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~ 521 (746)
T KOG0354|consen 473 --GEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSK 521 (746)
T ss_pred --CCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCe
Confidence 55555 8999999999999999999999999999999999999 8875543
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-10 Score=108.88 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=86.5
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------------------------cEEEEeeCCCC
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------------------------FKYCRLDGQTA 109 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~G~~~ 109 (288)
++......+.++||||+.+..++.++..|.... ..+..+||+++
T Consensus 235 ~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~ 314 (737)
T PRK02362 235 LVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLS 314 (737)
T ss_pred HHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCC
Confidence 333334567899999999998888777665321 25678899999
Q ss_pred HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec-----CCCCcchhhhhhHHHHHHhhh
Q psy10684 110 HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-----SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 110 ~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d-----~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.++|..+.+.|+ ++.++| |++|++.++|+|++..+.||. || .|.++..+.|++||+||.|..
T Consensus 315 ~~eR~~ve~~Fr--~G~i~V-LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 315 REHRELVEDAFR--DRLIKV-ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred HHHHHHHHHHHH--cCCCeE-EEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 999999999998 456666 899999999999999888886 66 467788999999999999875
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=104.83 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=117.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+-+.++-+.... ...+.... +.....|+.++.+.+.++...+..|||||.+....+.|...|...|+++..+
T Consensus 395 Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vL 474 (896)
T PRK13104 395 EFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVL 474 (896)
T ss_pred HHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEee
Confidence 355666666554332211 11111111 2234579999999999889999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccc--------------------------------------
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA-------------------------------------- 146 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a-------------------------------------- 146 (288)
||...+.+|+.+.+.|+. +. ++++|+.+|||+|+.-.
T Consensus 475 nak~~q~Ea~iia~Ag~~--G~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 549 (896)
T PRK13104 475 NAKFHEKEAQIIAEAGRP--GA---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGG 549 (896)
T ss_pred cCCCChHHHHHHHhCCCC--Cc---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCC
Confidence 999999999999999983 22 48999999999998833
Q ss_pred ceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 147 DVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 147 ~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
=|||--+.+-+...+.|..||+||-|..|+.
T Consensus 550 L~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 550 LRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 4789999999999999999999999999875
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-10 Score=78.67 Aligned_cols=69 Identities=29% Similarity=0.568 Sum_probs=62.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
++.+..++|+++.++|...++.|+ +.. . .+++++.+.+.|+|+..++.|++++++||+....|+++|+-
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~-~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFN-NGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHH-cCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 677889999999999999999998 433 3 66778899999999999999999999999999999999974
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=105.53 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.+.++|||++....++.+...|.. .++.++.+||+++.++|.+++..|. ++..+| |++|+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~--~G~rkV-lvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAP--AGRRKV-VLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcccc--CCCeEE-EEecchHHhcccccCceEE
Confidence 467899999999999999999987 5889999999999999999999997 334444 8999999999999999999
Q ss_pred EEecCC----CCcc--------------hhhhhhHHHHHHhhhcch
Q psy10684 150 VLYDSD----WNPQ--------------MDLQAMVREAKILRRGSI 177 (288)
Q Consensus 150 i~~d~~----wnp~--------------~~~Qa~~R~~R~Gq~~~v 177 (288)
|+++.+ ++|. .+.||.||+||. +.|..
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~c 332 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGIC 332 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEE
Confidence 997765 3332 578888888887 45543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=103.59 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=106.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.++++-+..+.+.|..|||||++....+.+...|...|+++..+|+..+..+|..+.+.|+. +. ++++|+
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~---VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--GA---VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--Cc---EEEecC
Confidence 4679999999999999999999999999999999999999999999999999999999999999983 33 489999
Q ss_pred cccccccccc-------------------------------------cceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLAT-------------------------------------ADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~-------------------------------------a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||.|+.- .=|||--+.+-+...+.|..||++|-|..|+.
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 9999999883 34899999999999999999999999999875
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-09 Score=97.26 Aligned_cols=110 Identities=19% Similarity=0.320 Sum_probs=95.8
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..+..++.... ++.+++||++.......+...+...++ +..++|+++..+|..+++.|+.+. ..+ |+++++
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~-lv~~~v 341 (442)
T COG1061 267 ERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG--IKV-LVTVKV 341 (442)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCE-EEEeee
Confidence 445555555555433 678999999999999999999998888 889999999999999999998433 444 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+.+|+|++.++.+|+..+.-++..+.|++||+.|.
T Consensus 342 l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 342 LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999995
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-09 Score=102.48 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC-------------------------cEEEEeeCCCCHHHHHHHH
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG-------------------------FKYCRLDGQTAHEDRQRQI 117 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~-------------------------~~~~~~~G~~~~~~R~~~i 117 (288)
+..++.+....+.++|||++....++.++..|.... ..+..+||+++.++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 445555555677899999999999888887775431 1356789999999999999
Q ss_pred HhhcCCCCCeeEEEEecccccccccccccceeEEecC---------CCCcchhhhhhHHHHHHhhh
Q psy10684 118 NDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS---------DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 118 ~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~---------~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.|+ ++.++| |++|++.+.|+|++. ..||+.+. +.++..+.|++||+||.|..
T Consensus 305 ~~f~--~g~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 305 EMFR--NRYIKV-IVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred HHHH--cCCCeE-EEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 9998 455666 899999999999985 57777664 34566788999999999854
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=92.32 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHHH-----hCCCeEEEEecchHHHHHHHHHHhhcC--cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 58 GKMVVLDKLLPKLK-----AQESRVLIFSQMTRMLDILEDYCYWRG--FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 58 ~K~~~l~~ll~~~~-----~~~~kviIFs~~~~~~~~l~~~l~~~~--~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
.|...+..+++.+. ..+.|+|||++....++.+...|+..+ +.+..+||.+++.+|.+.. ... +
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~-i 321 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFD-I 321 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCC-E
Confidence 44555555444432 246799999999999999999999864 6788999999999987653 122 4
Q ss_pred EEecccccccccccccceeEEecCCCCcchhhhhhHHHH
Q psy10684 131 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 131 l~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
|++|+++++|+|+... .|| ++ |-++..|.||+||++
T Consensus 322 LVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 322 LLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8999999999999864 666 56 667889999888864
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=101.03 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHH---HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe-
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRM---LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS- 133 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~---~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s- 133 (288)
.|...+.++++.+ +.++|||++.... ++.+...|...|+++..+||++ .+.+++|. ++++.||+.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~--~G~~~VLVata 384 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE--EGEVDVLVGVA 384 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH--CCCCCEEEEec
Confidence 5777777777643 4689999998776 9999999999999999999999 23469997 5666776654
Q ss_pred --cccccccccccc-cceeEEecCCC------CcchhhhhhHHHHHHh
Q psy10684 134 --TRAGGLGINLAT-ADVVVLYDSDW------NPQMDLQAMVREAKIL 172 (288)
Q Consensus 134 --~~~~~~Glnl~~-a~~vi~~d~~w------np~~~~Qa~~R~~R~G 172 (288)
|++++||||++. ..+||||+.|- ....+.++++|+-.+.
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhc
Confidence 799999999998 89999999997 5677788888886554
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-08 Score=99.06 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc---------------------------------CcEEEEeeCCCC
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR---------------------------------GFKYCRLDGQTA 109 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~G~~~ 109 (288)
+..++.+....+.++|||++.+..++.++..|... ...+..+||+++
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 34445555556789999999998877665444210 224778999999
Q ss_pred HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE-------ecCCCC-cchhhhhhHHHHHHhh
Q psy10684 110 HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------YDSDWN-PQMDLQAMVREAKILR 173 (288)
Q Consensus 110 ~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~-------~d~~wn-p~~~~Qa~~R~~R~Gq 173 (288)
.++|..+.+.|+ ++.++| |++|.+.+.|+|++....||. ++.+.- ...+.|++||+||.|.
T Consensus 307 ~~eR~~ve~~F~--~G~i~V-LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 307 RTERVLIEDAFR--EGLIKV-ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred HHHHHHHHHHHH--CCCCeE-EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 999999999998 455666 899999999999998887773 333332 3467999999999763
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-08 Score=100.50 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=79.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE---EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK---YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~---~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
...++|||++....++.+...|...+++ +..+||++++++|.++++.+ +..+| +++|+++.+||++.+.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkI-IVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRI-VLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeE-EEeccHHhhccccCcceEE
Confidence 3468999999999999999999988764 67899999999999886643 33444 8999999999999999999
Q ss_pred EEec---------------CCCCc---chhhhhhHHHHHHhhhcc
Q psy10684 150 VLYD---------------SDWNP---QMDLQAMVREAKILRRGS 176 (288)
Q Consensus 150 i~~d---------------~~wnp---~~~~Qa~~R~~R~Gq~~~ 176 (288)
|+++ .+..| +.+.||.||+||. +.|.
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~ 403 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGI 403 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcE
Confidence 9985 33333 5788999999888 4554
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.5e-08 Score=95.37 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC---cEEEEeeCCCCHHHH----HHHHHhhcCCCC-CeeEEEEec
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG---FKYCRLDGQTAHEDR----QRQINDFNMEGS-DIFIFMLST 134 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~---~~~~~~~G~~~~~~R----~~~i~~F~~~~~-~~~vll~s~ 134 (288)
+++.+.+....+.+++||++..+.+..+.+.|+..+ .++..+||+++..+| .++++.|..+.. ....+|++|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT 628 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT 628 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC
Confidence 334444444567899999999999999999998764 689999999999999 567889942222 112458999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
++..+|+|+ .++.+|....| ...+.||+||+||.+..
T Consensus 629 QViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 629 QVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred cchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999999999 46877776555 56889999999999874
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.6e-08 Score=97.60 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcC---cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 59 KMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRG---FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 59 K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~---~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
+...+...+..+.. ...++|||++....++.+...|...+ +.+..+||+++.++|.++++.+ +..+| +++|
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~rkI-VLAT 337 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SGRRI-VLAT 337 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CCceE-EEec
Confidence 44555666655443 34689999999999999999998764 5688899999999999885443 22344 8999
Q ss_pred ccccccccccccceeEEecCCC------------------CcchhhhhhHHHHHHhhhcc
Q psy10684 135 RAGGLGINLATADVVVLYDSDW------------------NPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~w------------------np~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++.+||++.++.+||.++.+- +-+.+.||.||+||.| .|.
T Consensus 338 NIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~ 396 (1283)
T TIGR01967 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGI 396 (1283)
T ss_pred cHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-Cce
Confidence 9999999999999999987321 2357789999998887 544
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-08 Score=76.55 Aligned_cols=68 Identities=31% Similarity=0.568 Sum_probs=60.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+..+..++|+++..+|...+++|+ ... ..+|+++.+.|.|+|+..++++++++++|++....|+++||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~f~-~~~--~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~ 119 (131)
T cd00079 52 GIKVAALHGDGSQEEREEVLKDFR-EGE--IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119 (131)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHH-cCC--CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheeccccc
Confidence 456778999999999999999998 333 45666789999999999999999999999999999999998
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=91.66 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC-cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG-FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~-~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
...+.+.+.++.++...++||++.+.+.+.+...|+..+ .+...-||+.+.+.|..+-++|+. ++.++ ++||.+.-
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~--G~lra-vV~TSSLE 315 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE--GELKA-VVATSSLE 315 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc--CCceE-EEEccchh
Confidence 355666777777777799999999999999999999986 899999999999999999999984 44666 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
.|+|.-..+.||.+.+|-.-+...||+||++.-
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccc
Confidence 999999999999999999999999999998543
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-07 Score=80.87 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=90.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.+-.-+|+....+++|+|||+...-.+..-+-.| |.+ .+.|.+++.+|.++++.|+ .++.+..+++ ++
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq-~n~~vNTIFl-SK 597 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQ-TNPKVNTIFL-SK 597 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcc-cCCccceEEE-ee
Confidence 677888888888877778999999998766555444443 444 5889999999999999999 6677777444 58
Q ss_pred cccccccccccceeEEecCCCC-cchhhhhhHHHHHHhhhc
Q psy10684 136 AGGLGINLATADVVVLYDSDWN-PQMDLQAMVREAKILRRG 175 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wn-p~~~~Qa~~R~~R~Gq~~ 175 (288)
+|-..++|+.|+.+|......- ...+.||.||+-|..+..
T Consensus 598 VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~ 638 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRN 638 (776)
T ss_pred ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcC
Confidence 9999999999999999988764 467789999999887443
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-08 Score=89.82 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=95.2
Q ss_pred cCchHHHHHHHHHHHHhC----C--CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeE
Q psy10684 56 NSGKMVVLDKLLPKLKAQ----E--SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~----~--~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~v 129 (288)
.+.|++.+..+.+.-... + .+.|||++++..+..|+..|..+|++...||++++..+|..+=..|.. ..+.+
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~--q~l~~ 493 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA--QELAA 493 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc--CCcce
Confidence 678999999998863222 2 479999999999999999999999999999999999999999999973 44444
Q ss_pred EEEecccccccccccccceeEEe-----cCCCCcchhhhhhHHHHHHh
Q psy10684 130 FMLSTRAGGLGINLATADVVVLY-----DSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 130 ll~s~~~~~~Glnl~~a~~vi~~-----d~~wnp~~~~Qa~~R~~R~G 172 (288)
+++|.+.+.|+|++ |+.||+= --|.+|..+.|..||+||.+
T Consensus 494 -VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 494 -VVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred -EeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 88999999999988 5556542 23569999999999999986
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-07 Score=92.06 Aligned_cols=90 Identities=11% Similarity=0.148 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecch---HHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe--
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMT---RMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS-- 133 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~---~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s-- 133 (288)
+...|.++++.+ +.++|||++.. +.++.|...|...|+++..+||+++ ++.++.|. ++++.||+.+
T Consensus 314 ~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr--~G~~~vLVata~ 384 (1171)
T TIGR01054 314 LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFA--EGEIDVLIGVAS 384 (1171)
T ss_pred HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHH--cCCCCEEEEecc
Confidence 345666666543 56899999998 9999999999999999999999996 36899998 4666776554
Q ss_pred -cccccccccccc-cceeEEecCCCC
Q psy10684 134 -TRAGGLGINLAT-ADVVVLYDSDWN 157 (288)
Q Consensus 134 -~~~~~~Glnl~~-a~~vi~~d~~wn 157 (288)
|++++||||++. .++|||||+|-.
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCCCE
Confidence 699999999998 899999998843
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-07 Score=79.18 Aligned_cols=145 Identities=19% Similarity=0.308 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCC---CCCCCCCCccccccCchHHHHHHHHHHH-----HhCCCeEEEEecchHHHHH
Q psy10684 18 KMRLQNILMQLRKCSNHPYLFDGAE---PGPPYTTDEHLVFNSGKMVVLDKLLPKL-----KAQESRVLIFSQMTRMLDI 89 (288)
Q Consensus 18 ~~~~~~~l~~Lrq~~~hP~l~~~~~---~~~~~~~~~~~~~~s~K~~~l~~ll~~~-----~~~~~kviIFs~~~~~~~~ 89 (288)
...+-.++.+|+.+|+||+|+-+.. ........++..+.|+|+..|-+++..+ ...+-+++|.++...++|.
T Consensus 53 ~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldl 132 (297)
T PF11496_consen 53 VQSMELLIENLRLVANHPSLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDL 132 (297)
T ss_dssp -HHHHHHHHHHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHH
T ss_pred HHHHHHHHHHHHHhccCccccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHH
Confidence 3567888899999999999965432 1122333445677999999999999998 5556799999999999999
Q ss_pred HHHHHhhcCcEEEEeeCCCCHHHHHHHH------------Hhhc-CCCCCeeEEEEecccccc----cccccccceeEEe
Q psy10684 90 LEDYCYWRGFKYCRLDGQTAHEDRQRQI------------NDFN-MEGSDIFIFMLSTRAGGL----GINLATADVVVLY 152 (288)
Q Consensus 90 l~~~l~~~~~~~~~~~G~~~~~~R~~~i------------~~F~-~~~~~~~vll~s~~~~~~----Glnl~~a~~vi~~ 152 (288)
++..|.-.++.+-++.|..-..+....- .... .....+.+.|++++-... .++-...+-||-|
T Consensus 133 lE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsf 212 (297)
T PF11496_consen 133 LEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISF 212 (297)
T ss_dssp HHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-
T ss_pred HHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEe
Confidence 9999999999999999987555443322 0010 123456677777664433 2344477899999
Q ss_pred cCCCCcchhh
Q psy10684 153 DSDWNPQMDL 162 (288)
Q Consensus 153 d~~wnp~~~~ 162 (288)
|+.+++....
T Consensus 213 D~~~d~~~p~ 222 (297)
T PF11496_consen 213 DPSFDTSLPS 222 (297)
T ss_dssp SST--TTSHH
T ss_pred cCCCCCCChH
Confidence 9999987654
|
The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B. |
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-07 Score=92.60 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=93.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+...||||....+++.+...|...|+....||++++..+|+.+...|.. .+++| ++.|=|-|.|+|-.++.-||+
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~--~~~~V-ivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS--DKIRV-IVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc--CCCeE-EEEEeeccCCCCCCceeEEEE
Confidence 346789999999999999999999999999999999999999999999983 34555 888999999999999999999
Q ss_pred ecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
|..|-+-.-|-|.+||+||-|+...
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~ 584 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSS 584 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcce
Confidence 9999999999999999999998754
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=92.53 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHH---HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec---
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRM---LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST--- 134 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~---~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~--- 134 (288)
..+.++++. .+...||||+.... ++.+...|...|+++..+||+ |.+.++.|. ++++.| |++|
T Consensus 320 ~~L~~ll~~---~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~--~G~~~V-LVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKK---LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE--EGEIDY-LIGVATY 388 (1638)
T ss_pred HHHHHHHHh---CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH--cCCCCE-EEEecCC
Confidence 456666654 35789999998764 589999999999999999994 889999998 455566 5555
Q ss_pred -ccccccccccc-cceeEEecCCC---Ccchhhhhh-------------HHHHHHhhh
Q psy10684 135 -RAGGLGINLAT-ADVVVLYDSDW---NPQMDLQAM-------------VREAKILRR 174 (288)
Q Consensus 135 -~~~~~Glnl~~-a~~vi~~d~~w---np~~~~Qa~-------------~R~~R~Gq~ 174 (288)
+++++|||++. ..+||+|+.|- +...|.|.. +|++|-|..
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 68999999997 99999999998 766666655 777777744
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=87.64 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc------Cc---EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR------GF---KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~------~~---~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
+.|.||||.....++.+...|... ++ .+..++|+++ ++.+++++|++ +....++++++....|+|.+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcc
Confidence 369999999999988888776542 22 4567899985 67889999983 33334588999999999999
Q ss_pred ccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 145 TADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 145 ~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+++|++++++-++..+.|++||+-|..-
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999743
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-06 Score=80.68 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=68.2
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCCHHHH--HHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC--CC-c-
Q psy10684 87 LDILEDYCYWR--GFKYCRLDGQTAHEDR--QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD--WN-P- 158 (288)
Q Consensus 87 ~~~l~~~l~~~--~~~~~~~~G~~~~~~R--~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~--wn-p- 158 (288)
.+.+++.|... +.++.++|+.++..++ +++++.|.++ +..| |+.|+..++|+|+..++.|+.+|.+ .+ |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g--~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG--KADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC--CCCE-EEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 47777888776 7899999999877665 8999999843 4444 8899999999999999999765544 33 3
Q ss_pred --------chhhhhhHHHHHHhhhcch
Q psy10684 159 --------QMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 159 --------~~~~Qa~~R~~R~Gq~~~v 177 (288)
..+.|+.||++|.+..+.|
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~v 374 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQV 374 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEE
Confidence 3568999999997665543
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=82.04 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=109.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+.+.++-+.-.. -..+.... +.....|+.++++-+.+....+..|||.|.+....+.|...|...|+++..+
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 456666666655432221 11111111 2234589999999999888899999999999999999999999999999999
Q ss_pred eCCCCHHHHHH-HHHhhcCCCCCeeEEEEecccccccccccccc--------eeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 105 DGQTAHEDRQR-QINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 105 ~G~~~~~~R~~-~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~--------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
+.... +++. ++.+= +...-+.++|..+|||-|+.-.. |||..+.+-+...+.|..||++|.|..|
T Consensus 457 NAk~~--e~EA~IIa~A----G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 457 NAKQN--AREAEIIAKA----GQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred cccch--hhHHHHHHhC----CCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 98753 3333 44322 22223578999999999988554 9999999999999999999999999999
Q ss_pred ch
Q psy10684 176 SI 177 (288)
Q Consensus 176 ~v 177 (288)
+.
T Consensus 531 ss 532 (925)
T PRK12903 531 ES 532 (925)
T ss_pred cc
Confidence 75
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-05 Score=74.52 Aligned_cols=220 Identities=14% Similarity=0.108 Sum_probs=129.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH----hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC----YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l----~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+......+.+++|-+.....+......+ ...|+++..++|+++..+|.+.+..... +.+.|++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvV 369 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIVI 369 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEE
Confidence 789998655544444566889999999988877665544 4447999999999999999999998863 3445544
Q ss_pred EecccccccccccccceeEEecCC-------------------------CCcchhhhhhHHHHH----------Hhhhcc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSD-------------------------WNPQMDLQAMVREAK----------ILRRGS 176 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~-------------------------wnp~~~~Qa~~R~~R----------~Gq~~~ 176 (288)
.+...-...+.+.....||+=+-+ ..|.... ....+. .|+ .+
T Consensus 370 gT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r-~~ 446 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGR-KP 446 (681)
T ss_pred chHHHhcccchhcccceEEEechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCC-CC
Confidence 443333334445555544443221 1111100 000000 000 00
Q ss_pred h---------HHHHHHHhhhhccccchhhhhhccCCCc---------ccccc----cchhhhcccCCCccccchhHHHhh
Q psy10684 177 I---------KKALEAKMSRYRAPFHQLRIAYGANKGK---------NYTEE----EDRYLYCRLDGQTAHEDRQRQIND 234 (288)
Q Consensus 177 v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~e~----~~gi~~~~l~G~~~~~~R~~~i~~ 234 (288)
+ ...+.+.+.+.....+++.+....-... ...+. -.++....++|+++.++|++++++
T Consensus 447 i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~ 526 (681)
T PRK10917 447 ITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAA 526 (681)
T ss_pred cEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1 0111122222222233333222110000 00000 113567889999999999999999
Q ss_pred cccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 235 FNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 235 f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
|. +.+.. +|+++..-+.|+|+..++.||+++++. .-+--.|..+|+
T Consensus 527 F~--~g~~~-ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRv 573 (681)
T PRK10917 527 FK--AGEID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRV 573 (681)
T ss_pred HH--cCCCC-EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcc
Confidence 98 44555 456778999999999999999999884 345556888886
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.7e-06 Score=78.22 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=109.8
Q ss_pred HHHHhhcCCCCCCCCCCCCC-CCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPGP-PYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~-~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-... ..+.... +.....|+.++.+-+....+.+..|||.+.+...-+.|...|...|+++..
T Consensus 377 ~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 377 EQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred HHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 34667776665543322111 1111111 223457999999999988899999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc---------------cceeEEecCCCCcchhhhhhHHH
Q psy10684 104 LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT---------------ADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 104 ~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~---------------a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
++.... ++-.+++.+=- .+ ..+-++|.-+|||-|+.- .=|||-.+.+-+...+.|..||+
T Consensus 457 LNAk~~-~~EA~IIa~AG--~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 457 LNAKND-AEEARIIAEAG--KY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred eccCch-HhHHHHHHhcC--CC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 998754 33344555432 22 224789999999988873 34899999999999999999999
Q ss_pred HHHhhhcchH
Q psy10684 169 AKILRRGSIK 178 (288)
Q Consensus 169 ~R~Gq~~~v~ 178 (288)
+|.|..|+..
T Consensus 532 GRQGDpGss~ 541 (764)
T PRK12326 532 GRQGDPGSSV 541 (764)
T ss_pred ccCCCCCcee
Confidence 9999999863
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.8e-06 Score=76.19 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=78.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
..|+-+|.||. ..+-.+...++.+|.. ++.++|+.+++.|.+--..||++++++.| |+.++|-|.||||. ..+||
T Consensus 356 k~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 34677888874 4555667777777766 99999999999999999999988888888 77889999999986 78899
Q ss_pred EecCCC---------CcchhhhhhHHHHHHhhh
Q psy10684 151 LYDSDW---------NPQMDLQAMVREAKILRR 174 (288)
Q Consensus 151 ~~d~~w---------np~~~~Qa~~R~~R~Gq~ 174 (288)
+++..- ..+.-.|-.||+||.|..
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 987641 123335788999999754
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-06 Score=84.75 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=59.6
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRTV 284 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra~ 284 (288)
...++|+++..+|.+++++|+ ..+.+.++++| ++|+.|++++.|+.||++++++ ++..+.|.++|+.
T Consensus 518 ~~~I~G~ts~~ER~~il~~Fr-~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRil 585 (732)
T TIGR00603 518 KPFIYGPTSQQERMQILQNFQ-HNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRIL 585 (732)
T ss_pred CceEECCCCHHHHHHHHHHHH-hCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccc
Confidence 456899999999999999998 56677777776 9999999999999999999886 9999999999973
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.3e-05 Score=71.17 Aligned_cols=220 Identities=14% Similarity=0.164 Sum_probs=132.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.|+|--+. ++..+. .+..+||.+...+.+......|...|++...++|..+..++..++.... .+...++++++.
T Consensus 36 GsGKTl~y--~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TPe 110 (470)
T TIGR00614 36 GGGKSLCY--QLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTPE 110 (470)
T ss_pred CCcHhHHH--HHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHH
Confidence 57886532 222222 3457899999988877777788888999999999999888888888775 445667777766
Q ss_pred cccccc-------cccccceeEEecCC----CCcchh--hhhhHHHHHHh-------hhcchHHHHHHHhhhhcc-----
Q psy10684 136 AGGLGI-------NLATADVVVLYDSD----WNPQMD--LQAMVREAKIL-------RRGSIKKALEAKMSRYRA----- 190 (288)
Q Consensus 136 ~~~~Gl-------nl~~a~~vi~~d~~----wnp~~~--~Qa~~R~~R~G-------q~~~v~~~i~~~~~~~~~----- 190 (288)
...... .+.....+|+=+.+ |..... ...++...+.- -+.+....+...+.+...
T Consensus 111 ~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~ 190 (470)
T TIGR00614 111 KCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQ 190 (470)
T ss_pred HHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCc
Confidence 433322 23344555544433 432111 11222222211 011111111111111000
Q ss_pred ----------------------------------ccchhhhhhccCCC-ccccc--ccchhhhcccCCCccccchhHHHh
Q psy10684 191 ----------------------------------PFHQLRIAYGANKG-KNYTE--EEDRYLYCRLDGQTAHEDRQRQIN 233 (288)
Q Consensus 191 ----------------------------------~~~~~~~~~~~~~~-~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~ 233 (288)
.....+++...... ..+.+ ...|+....++|+++.++|.+..+
T Consensus 191 ~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 191 IFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred EEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 00000000000000 00000 123677788999999999999999
Q ss_pred hcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 234 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 234 ~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|. +..+.|+ +++.+.|.|+|+...+.||+++++.++....|.++||
T Consensus 271 ~F~--~g~~~vL-VaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 271 KFQ--RDEIQVV-VATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred HHH--cCCCcEE-EEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 998 5555655 5668999999999999999999999999999999998
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.3e-05 Score=72.74 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=127.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+......+.+++|-+.....+..+...+. ..|+++..++|+++..+|...++.... +++.|++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiV 343 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--GQIHLVV 343 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEE
Confidence 7899986554444445667899999998888776665544 347999999999999999988888863 3444544
Q ss_pred EecccccccccccccceeEEec----------------------------CCCCcchhhhhh-HH-------HHHHhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYD----------------------------SDWNPQMDLQAM-VR-------EAKILRRG 175 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d----------------------------~~wnp~~~~Qa~-~R-------~~R~Gq~~ 175 (288)
.+.......+.+.....||+=+ ....|....... +. .-..|+ .
T Consensus 344 gT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r-~ 422 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGR-K 422 (630)
T ss_pred ecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCC-C
Confidence 4433333334444444444332 221121110000 00 000000 0
Q ss_pred ch---------HHHHHHHhhhhccccchhhhhhccCCC-c--------c----cccccchhhhcccCCCccccchhHHHh
Q psy10684 176 SI---------KKALEAKMSRYRAPFHQLRIAYGANKG-K--------N----YTEEEDRYLYCRLDGQTAHEDRQRQIN 233 (288)
Q Consensus 176 ~v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~-~--------~----~~e~~~gi~~~~l~G~~~~~~R~~~i~ 233 (288)
++ ...+.+.+.+.....+++++....... . . +.+.-.++....++|+++.++|.++++
T Consensus 423 ~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 502 (630)
T TIGR00643 423 PITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVME 502 (630)
T ss_pred ceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 00 011111111111112222222111000 0 0 000012556788999999999999999
Q ss_pred hcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 234 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 234 ~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
+|. +.... +|+++..-+.|+|+..++.||+++++. .-+.-.|..+||
T Consensus 503 ~F~--~g~~~-ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRv 550 (630)
T TIGR00643 503 EFR--EGEVD-ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRV 550 (630)
T ss_pred HHH--cCCCC-EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhc
Confidence 998 44444 455678999999999999999999884 445566888887
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-06 Score=76.11 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=87.7
Q ss_pred EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCC
Q psy10684 77 VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW 156 (288)
Q Consensus 77 viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w 156 (288)
-||||..++.++.++-.|...||+...+|.+....+|..+-+.|.. +++.| ++.|.+-|.|+|-+.+..||+.+++-
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~--~~~Pv-I~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN--NEIPV-IAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc--CCCCE-EEEEeccccccCCcceeEEEecCchh
Confidence 5999999999999999999999999999999999999999999984 34444 88899999999999999999999999
Q ss_pred CcchhhhhhHHHHHHhhh
Q psy10684 157 NPQMDLQAMVREAKILRR 174 (288)
Q Consensus 157 np~~~~Qa~~R~~R~Gq~ 174 (288)
|-+-|-|--||+||-|..
T Consensus 335 n~AgYYQESGRAGRDGk~ 352 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKR 352 (641)
T ss_pred hhHHHHHhccccccCCCc
Confidence 999999999999999854
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=77.59 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=67.7
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCC--HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC--CCc--
Q psy10684 87 LDILEDYCYWR--GFKYCRLDGQTA--HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD--WNP-- 158 (288)
Q Consensus 87 ~~~l~~~l~~~--~~~~~~~~G~~~--~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~--wnp-- 158 (288)
.+.+++.|... +.++..+||.+. .++++++++.|.++ ++.| |+.|+..++|+|++.++.|+.+|.+ .+.
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g--~~~I-LVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG--EADI-LIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC--CCCE-EEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 45777777775 788999999986 46789999999843 4444 7899999999999999999777654 332
Q ss_pred --------chhhhhhHHHHHHhhhcc
Q psy10684 159 --------QMDLQAMVREAKILRRGS 176 (288)
Q Consensus 159 --------~~~~Qa~~R~~R~Gq~~~ 176 (288)
..+.|+.||++|.+..+.
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~ 541 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGE 541 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCE
Confidence 457899999999665544
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0001 Score=68.49 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=61.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|...++.|. ++.+.|++ ++...+.|+++...++||.+|+++++....|.++||
T Consensus 268 ~~~~~~~l~g~~~~~~R~~~l~~f~--~G~~~vLV-aTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~ 336 (434)
T PRK11192 268 AGINCCYLEGEMVQAKRNEAIKRLT--DGRVNVLV-ATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRT 336 (434)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHh--CCCCcEEE-EccccccCccCCCCCEEEEECCCCCHHHHhhccccc
Confidence 4678889999999999999999998 55666555 558889999999999999999999999999999998
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.1e-05 Score=71.54 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=61.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+++++|. +..+.| |+++.+.+.|+++...++||.+|+++++....|.++|+
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~--~G~~~I-LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRt 468 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFK--TGKSPI-MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRT 468 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHh--cCCCcE-EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 3667788999999999999999998 444454 66779999999999999999999999999999999998
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.9e-05 Score=70.03 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
++=|+.-++...+.+++++|-+-...|.+-|..+|...|+++..+|+....-+|.+++...+. +...| |+-.+...+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~Dv-LVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDV-LVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCccE-EEeehhhhc
Confidence 333444444445678999999999999999999999999999999999999999999999983 44455 788999999
Q ss_pred cccccccceeEEecCC-----CCcchhhhhhHHHHHHh
Q psy10684 140 GINLATADVVVLYDSD-----WNPQMDLQAMVREAKIL 172 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~-----wnp~~~~Qa~~R~~R~G 172 (288)
|||++.++-|.++|.+ -+.....|-|||+.|--
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc
Confidence 9999999999999965 45667889999999964
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=69.06 Aligned_cols=69 Identities=17% Similarity=0.400 Sum_probs=60.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|++++.+|+++++.|. +....|+ +++...+.|+++...++||.+|.+.++....|.++|+
T Consensus 265 ~~~~v~~~hg~~~~~eR~~~l~~F~--~g~~~vL-VaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRt 333 (460)
T PRK11776 265 QGFSALALHGDLEQRDRDQVLVRFA--NRSCSVL-VATDVAARGLDIKALEAVINYELARDPEVHVHRIGRT 333 (460)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCcEE-EEecccccccchhcCCeEEEecCCCCHhHhhhhcccc
Confidence 3567778899999999999999998 4555554 5668999999999999999999999999999999997
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=69.46 Aligned_cols=221 Identities=15% Similarity=0.182 Sum_probs=128.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..++|--+.. +..+. .+..++|.+.....+.--...|...|+++..++|..+..++..+..... .+.+.++++++
T Consensus 37 TG~GKTl~y~--lpal~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~--~~~~~il~~tp 111 (591)
T TIGR01389 37 TGGGKSLCYQ--VPALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALV--NGELKLLYVAP 111 (591)
T ss_pred CCccHhHHHH--HHHHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--CCCCCEEEECh
Confidence 3578876532 22222 3456788899888877677788888999999999999999888888776 34556666655
Q ss_pred ccccc-----cccccccceeEEecC----CCCcch--hhhhhHHHHHHhhhc-----------chHHHHHHHhhh-----
Q psy10684 135 RAGGL-----GINLATADVVVLYDS----DWNPQM--DLQAMVREAKILRRG-----------SIKKALEAKMSR----- 187 (288)
Q Consensus 135 ~~~~~-----Glnl~~a~~vi~~d~----~wnp~~--~~Qa~~R~~R~Gq~~-----------~v~~~i~~~~~~----- 187 (288)
..... -+.....+.+|+=|. .|.... ....++.....-... .+...+...+.-
T Consensus 112 e~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~ 191 (591)
T TIGR01389 112 ERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANE 191 (591)
T ss_pred hHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe
Confidence 43211 112223333333222 232211 111222221111000 111111111100
Q ss_pred hc----------------cc------------cchhhhhhccCCC-ccccc--ccchhhhcccCCCccccchhHHHhhcc
Q psy10684 188 YR----------------AP------------FHQLRIAYGANKG-KNYTE--EEDRYLYCRLDGQTAHEDRQRQINDFN 236 (288)
Q Consensus 188 ~~----------------~~------------~~~~~~~~~~~~~-~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~ 236 (288)
+. .. ....+++...... ..+.+ ...|+....++|+++.++|..+++.|.
T Consensus 192 ~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~ 271 (591)
T TIGR01389 192 FITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFL 271 (591)
T ss_pred EecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 00 00 0000111000000 00000 123666788999999999999999998
Q ss_pred cCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 237 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 237 ~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+. +|+++.+.|.|+|....+.||++++++++....|.++||
T Consensus 272 --~g~~~-vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRa 315 (591)
T TIGR01389 272 --YDDVK-VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315 (591)
T ss_pred --cCCCc-EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccc
Confidence 33444 566779999999999999999999999999999999998
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=68.53 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=61.3
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|.++++.|. +..+.| |+++.+.+.|+++...++||.||.+|++....|.++||
T Consensus 280 ~g~~v~~lhg~l~~~eR~~il~~Fr--~G~~~V-LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRa 348 (572)
T PRK04537 280 HGYRVGVLSGDVPQKKRESLLNRFQ--KGQLEI-LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 (572)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccc
Confidence 3677889999999999999999998 455555 45668899999999999999999999999999999998
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=72.66 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=130.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+-.....+.+++|.+..+..+......+.. .+++...++|..+..++.+.++.... +++.+++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS--GKIDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEE
Confidence 68999876655444445678999999999988887776654 36788899999999899888888873 3455655
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc--------hHHH-----------------------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS--------IKKA----------------------- 180 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~--------v~~~----------------------- 180 (288)
.+.......+.+.....+|+=+-+- -. ..|. .+...++.... ...+
T Consensus 560 GTp~ll~~~v~f~~L~llVIDEahr-fg-v~~~-~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~ 636 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIIDEEQR-FG-VKQK-EKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLP 636 (926)
T ss_pred chHHHhhCCCCcccCCEEEeecccc-cc-hhHH-HHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccc
Confidence 5554444455666666655533211 00 0010 01101110000 0000
Q ss_pred ------------HHHHhhhhccccchhhhhhccCCCccc-ccc--c--chhhhcccCCCccccchhHHHhhcccCCCCee
Q psy10684 181 ------------LEAKMSRYRAPFHQLRIAYGANKGKNY-TEE--E--DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIF 243 (288)
Q Consensus 181 ------------i~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~--~--~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~ 243 (288)
+.+.+.+......++++........+. .+. . .++....++|.|+.++|.+++.+|. +....
T Consensus 637 V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~--~Gk~~ 714 (926)
T TIGR00580 637 VRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY--KGEFQ 714 (926)
T ss_pred eEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH--cCCCC
Confidence 000111000111112111111100000 000 1 2456778999999999999999998 44444
Q ss_pred EEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 244 IFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 244 v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
+|+++..-+.|+++..++.||+++.+. .-+.-.|.++|+
T Consensus 715 -ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRv 754 (926)
T TIGR00580 715 -VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRV 754 (926)
T ss_pred -EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCC
Confidence 556778999999999999999998872 334456999986
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0383|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=4e-06 Score=80.28 Aligned_cols=94 Identities=29% Similarity=0.370 Sum_probs=77.4
Q ss_pred hhhhhHHHHHHhh---hcch-HHHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHh
Q psy10684 161 DLQAMVREAKILR---RGSI-KKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQIN 233 (288)
Q Consensus 161 ~~Qa~~R~~R~Gq---~~~v-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~ 233 (288)
++|...+.-+.|. +-.- ...+..++.++...+|++.+++++..+.++.|+ ..+ .|.++||..+...|+.+|+
T Consensus 596 ~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~ 674 (696)
T KOG0383|consen 596 EEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAID 674 (696)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhcc
Confidence 5666555555543 3332 456677788889999999999999999998886 345 8999999999999999999
Q ss_pred hcccCCCCeeEEEEeecccccC
Q psy10684 234 DFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 234 ~f~~~~~~~~v~l~s~~agg~g 255 (288)
+||..++.-++||+|++|||+|
T Consensus 675 ~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 675 RFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccCCCCccceEEEeecccccCC
Confidence 9998888899999999999998
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.1e-05 Score=74.37 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=107.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCccc-cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEHL-VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~~-~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+-+.+.-+.-.. ...+..... .....|..++.+-+......+..|||-|.+...-+.|...|...|+++..+
T Consensus 519 Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vL 598 (970)
T PRK12899 519 EFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVL 598 (970)
T ss_pred HHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceec
Confidence 456666665554332221 111111122 223579999999999888999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc--------cceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT--------ADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~--------a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.... ++-..++..=. .+ ..+-++|.-+|||-|+.- .=|||.-+.+-|+..+.|..||++|-|..|+
T Consensus 599 Nak~~-~~Ea~iia~AG--~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGs 673 (970)
T PRK12899 599 NAKNH-AQEAEIIAGAG--KL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGA 673 (970)
T ss_pred ccchh-hhHHHHHHhcC--CC--CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCc
Confidence 88743 22224444332 22 224789999999988763 3489999999999999999999999999998
Q ss_pred h
Q psy10684 177 I 177 (288)
Q Consensus 177 v 177 (288)
.
T Consensus 674 s 674 (970)
T PRK12899 674 A 674 (970)
T ss_pred e
Confidence 4
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=76.23 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHH----HHHhhcC----cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeE
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILE----DYCYWRG----FKYCRLDGQTAHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~----~~l~~~~----~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~v 129 (288)
++...+..++..+..++-|.|+|+.+...++.+. ..+...+ .....++|++..++|.++...|+.+ +..+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g--~~~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG--ELLG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC--CccE
Confidence 6777788888888889999999999999999886 3444444 5678899999999999999999844 3334
Q ss_pred EEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhc
Q psy10684 130 FMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 130 ll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~ 175 (288)
+++|.+.-.|+++...+-||....|- .-....|+.||++|-+|..
T Consensus 368 -~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 368 -VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred -EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc
Confidence 89999999999999999999999987 5688899999999999654
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00026 Score=67.37 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=61.7
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|..+++.|. +..+.| |+++.+.+-|+|+...++||.+|++.++....|.++||
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr--~G~~~I-LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFL--VGEVPV-IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHH--CCCCCE-EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 4677888999999999999999998 455565 56778999999999999999999999999999999998
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=73.16 Aligned_cols=219 Identities=14% Similarity=0.105 Sum_probs=128.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.++|....+..+......+.+++|-+..+..+..+...+... ++.+..++|..+.+++.+.+.... .+.+.|++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~--~g~~dIVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA--EGKIDILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH--hCCCCEEE
Confidence 689998655444444456789999999999888777666542 567788999999999998888876 33456666
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch--------HHHHH---------------------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI--------KKALE--------------------- 182 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v--------~~~i~--------------------- 182 (288)
.+.......+.+.....+|+=+-+-= . ..| ..+...+.....+ ..+..
T Consensus 709 gTp~lL~~~v~~~~L~lLVIDEahrf-G-~~~-~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~ 785 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIVDEEHRF-G-VRH-KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEEechhhc-c-hhH-HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCC
Confidence 66554444455555555544321100 0 000 0011111100000 00000
Q ss_pred --------------HH-hhhhccccchhhhhhccCCCcc-cccc--c--chhhhcccCCCccccchhHHHhhcccCCCCe
Q psy10684 183 --------------AK-MSRYRAPFHQLRIAYGANKGKN-YTEE--E--DRYLYCRLDGQTAHEDRQRQINDFNMEGSDI 242 (288)
Q Consensus 183 --------------~~-~~~~~~~~~~~~~~~~~~~~~~-~~e~--~--~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~ 242 (288)
+. +.++. ...+++++.......+ +.+. + .+.....++|+|+.++|.+++.+|. +..+
T Consensus 786 v~~~~~~~~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr--~Gk~ 862 (1147)
T PRK10689 786 VKTFVREYDSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--HQRF 862 (1147)
T ss_pred ceEEEEecCcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHH--hcCC
Confidence 00 00110 0111211111100000 0010 1 1456778899999999999999998 4555
Q ss_pred eEEEEeecccccCCCccccceEEEeCCC-CChhhhhhhhhhh
Q psy10684 243 FIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVRT 283 (288)
Q Consensus 243 ~v~l~s~~agg~glnl~~a~~v~~~d~~-wnp~~~~Qa~~Ra 283 (288)
.| |+++...+.|+++..+++||+.+++ +.-+.-.|-.+|+
T Consensus 863 ~V-LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRv 903 (1147)
T PRK10689 863 NV-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 (1147)
T ss_pred CE-EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhcc
Confidence 55 5566899999999999999998776 5666677999986
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=69.95 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=89.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHH--------HHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLD--------ILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGS 125 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~--------~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~ 125 (288)
.-.+...+.+.+.+-..+|+++-+-|.-.+.-+ .+...|+.. ++....+||+|+.+++++++.+|++ +
T Consensus 455 ~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~--~ 532 (677)
T COG1200 455 PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE--G 532 (677)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc--C
Confidence 446667777777766678899988887665433 333445432 6678899999999999999999984 3
Q ss_pred CeeEEEEecccccccccccccceeEEecCC-CCcchhhhhhHHHHHHhhhc
Q psy10684 126 DIFIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 126 ~~~vll~s~~~~~~Glnl~~a~~vi~~d~~-wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++.| |++|.+--+|+|+++|+.+|+.+.. +--+...|--||+||-+.+.
T Consensus 533 e~~I-LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 533 EIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred CCcE-EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 4444 8999999999999999999999875 34566678889999876553
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.7e-05 Score=79.14 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=58.2
Q ss_pred chhhhcccCCC--------ccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQ--------TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~--------~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....+.|. ++..+|.+++++|+ . ....+ |+++.+++.|+|+..+++||+|||+|||....|.++|+
T Consensus 388 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~-g~~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 388 EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFR-A-GEFNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred CCCceEEEEccccccccCCCCHHHHHHHHHHHH-c-CCCCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 35666677775 78889999999998 3 34554 56778999999999999999999999999999999987
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.3e-05 Score=73.86 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=97.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++++-+..+...|..|||-+.+.+.-+.|...|...|+++-.++......+ .+++.+=. ..+. +-++|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~AG-~~Ga---VTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAEAG-QPGT---VTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHhcC-CCCc---EEEecc
Confidence 467999999999999999999999999999999999999999999988888754222 33444332 2222 478999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
-+|||-|+. +.=|||--+.+-+...+.|..||++|-|..|+.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcc
Confidence 999998887 567899999999999999999999999999875
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.5e-05 Score=72.87 Aligned_cols=146 Identities=12% Similarity=0.078 Sum_probs=108.4
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+-+.++-+.... ...+.... +.....|+.++++-++.+.+.|..|||-+.+...-+.|...|...|+++-.+
T Consensus 400 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VL 479 (913)
T PRK13103 400 EFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVL 479 (913)
T ss_pred HHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHh
Confidence 466666666654432221 11111111 2335679999999999999999999999999999999999999999999888
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc-------------------------------------ccc
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA-------------------------------------TAD 147 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~-------------------------------------~a~ 147 (288)
+.... ++-.+++.+= +.++ .+-++|.-+|||-|+. +.=
T Consensus 480 NAk~~-~~EA~IIa~A--G~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGL 554 (913)
T PRK13103 480 NAKYH-EKEAEIIAQA--GRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGL 554 (913)
T ss_pred ccccc-hhHHHHHHcC--CCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCC
Confidence 87654 3333444432 2222 2478999999999886 344
Q ss_pred eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|||--+.+-|...+.|..||++|-|..|+.
T Consensus 555 hVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 555 HVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred EEEeeccCchHHHHHHhccccccCCCCCce
Confidence 899999999999999999999999999875
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=64.09 Aligned_cols=69 Identities=17% Similarity=0.348 Sum_probs=61.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|.+.++.|. +..+. +|+++...+.|+++...++||.||++.++....|.++|+
T Consensus 268 ~g~~~~~lhgd~~q~~R~~il~~Fr--~G~~~-ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRt 336 (629)
T PRK11634 268 NGYNSAALNGDMNQALREQTLERLK--DGRLD-ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRT 336 (629)
T ss_pred CCCCEEEeeCCCCHHHHHHHHHHHh--CCCCC-EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 4677788999999999999999998 44444 566779999999999999999999999999999999997
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.9e-05 Score=66.27 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=44.1
Q ss_pred EEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 131 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 131 l~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+.-|+|+++...|.|||||.|-++..|.++.+|++|.|-++-.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgla 348 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 348 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccce
Confidence 67889999999999999999999999999999999999999988753
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00086 Score=65.04 Aligned_cols=220 Identities=15% Similarity=0.218 Sum_probs=126.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..++|--+. ++..+.. +..+||.+.....+......|...|+....+++..+.+++........ .+...++++++
T Consensus 49 TGsGKTl~y--~lpal~~-~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~--~g~~~il~~tP 123 (607)
T PRK11057 49 TGGGKSLCY--QIPALVL-DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCR--TGQIKLLYIAP 123 (607)
T ss_pred CCchHHHHH--HHHHHHc-CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHh--CCCCcEEEECh
Confidence 368886532 2222222 357888999888877777788888999999999998888877777765 34455666554
Q ss_pred ccccc-----cccccccceeEEecC----CCCcch--hhhhhHHHHHHhh-------hcc----hHHHHHHHhhhhcc--
Q psy10684 135 RAGGL-----GINLATADVVVLYDS----DWNPQM--DLQAMVREAKILR-------RGS----IKKALEAKMSRYRA-- 190 (288)
Q Consensus 135 ~~~~~-----Glnl~~a~~vi~~d~----~wnp~~--~~Qa~~R~~R~Gq-------~~~----v~~~i~~~~~~~~~-- 190 (288)
..... .+.....+.+|+=+. .|.... ....++...+.-. +.+ +...+...+. +..
T Consensus 124 e~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~-l~~~~ 202 (607)
T PRK11057 124 ERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLG-LNDPL 202 (607)
T ss_pred HHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhC-CCCeE
Confidence 43221 111112233333221 232111 1122332221110 001 1111111110 000
Q ss_pred --------------------ccchh------------hhhhccCCC-ccccc--ccchhhhcccCCCccccchhHHHhhc
Q psy10684 191 --------------------PFHQL------------RIAYGANKG-KNYTE--EEDRYLYCRLDGQTAHEDRQRQINDF 235 (288)
Q Consensus 191 --------------------~~~~~------------~~~~~~~~~-~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f 235 (288)
....+ +++...... ..+.+ ...|+....++|+++.++|.++.++|
T Consensus 203 ~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F 282 (607)
T PRK11057 203 IQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAF 282 (607)
T ss_pred EEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 00000 000000000 00000 12356778899999999999999999
Q ss_pred ccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 236 NMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 236 ~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
. ...+.|+ +++.+.|.|+|+...+.||.+|++.++..-.|.++||
T Consensus 283 ~--~g~~~VL-VaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRa 327 (607)
T PRK11057 283 Q--RDDLQIV-VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (607)
T ss_pred H--CCCCCEE-EEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhc
Confidence 8 4455554 5668889999999999999999999999999999999
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00025 Score=71.60 Aligned_cols=70 Identities=20% Similarity=0.090 Sum_probs=62.3
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..|+....++|+++.++|..+.++|. ...+.|+ +.+.+.|.|+++..-+.||.++.+.++...-|-++||
T Consensus 702 ~~Gika~~YHAGLs~eeR~~vqe~F~--~Gei~VL-VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRA 771 (1195)
T PLN03137 702 EFGHKAAFYHGSMDPAQRAFVQKQWS--KDEINII-CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRA 771 (1195)
T ss_pred HCCCCeeeeeCCCCHHHHHHHHHHHh--cCCCcEE-EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhccc
Confidence 34788889999999999999999998 4555655 5668999999999999999999999999999999999
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00025 Score=62.15 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
.|...|+..+.++..++||....++++.+...|+.. ......+|+.. ..|.+.+.+|+ ++...+ |++|...-|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR--~G~~~l-LiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFR--DGKITL-LITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHH--cCceEE-EEEeehhhc
Confidence 567778877788899999999999999999999543 33445666655 68999999998 444444 899999999
Q ss_pred cccccccceeEEecCC--CCcchhhhhhHHHHHHh
Q psy10684 140 GINLATADVVVLYDSD--WNPQMDLQAMVREAKIL 172 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~--wnp~~~~Qa~~R~~R~G 172 (288)
|.+++..+..++-... +..+...|-.||+||--
T Consensus 368 GVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred ccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 9999999987776554 67778889889888864
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.4e-05 Score=69.66 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=61.5
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++.++|.+.+++|+ +.++.| |+++.+.+-|+++...++||.||+++++....|.++||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~--~g~~~v-LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~ 346 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFT--RGDLDI-LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 346 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHH--cCCCcE-EEEechhhcCCCccccCEEEEeCCCCchhheEeccccc
Confidence 4677889999999999999999998 455554 55668999999999999999999999999999999997
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0008 Score=66.22 Aligned_cols=115 Identities=9% Similarity=0.050 Sum_probs=79.6
Q ss_pred HHHHhhcCCCCCCCCCCCCC-CCCCCcccc-ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPGP-PYTTDEHLV-FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~-~~~~~~~~~-~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-... ..+....++ ....|+.++.+-+......+..|||-|.+.+.-+.|...|...|+++-.
T Consensus 374 ~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~v 453 (870)
T CHL00122 374 LEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQL 453 (870)
T ss_pred HHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccce
Confidence 34666776666654332221 112222222 2346999999988888899999999999999999999999999999999
Q ss_pred eeCCCCH-HHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 104 LDGQTAH-EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 104 ~~G~~~~-~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
++..... ++-.+++.+= +.++ -+-++|.-+|||-|+.
T Consensus 454 LNAk~~~~~~EA~IIA~A--G~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 454 LNAKPENVRRESEIVAQA--GRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred eeCCCccchhHHHHHHhc--CCCC--cEEEeccccCCCcCee
Confidence 9987432 3334455543 2222 2478999999997765
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00037 Score=68.93 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCC-CCCeeEEEEecccccccccc
Q psy10684 65 KLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNME-GSDIFIFMLSTRAGGLGINL 143 (288)
Q Consensus 65 ~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~-~~~~~vll~s~~~~~~Glnl 143 (288)
..+......+.|++|-++.+..+..+...|+..+.+++.+||++...+|.+.++....- ..+...++++|.+--.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 33334456678999999999999999999998887899999999999999888855421 12223358999999999998
Q ss_pred cccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 144 ATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 144 ~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
. . .+.+-|+. -.....||.||++|-|..
T Consensus 511 d-f-d~mITe~a-PidSLIQR~GRv~R~g~~ 538 (733)
T COG1203 511 D-F-DVLITELA-PIDSLIQRAGRVNRHGKK 538 (733)
T ss_pred c-c-CeeeecCC-CHHHHHHHHHHHhhcccc
Confidence 7 3 33344432 235678999999999943
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=3.8e-05 Score=76.88 Aligned_cols=91 Identities=24% Similarity=0.231 Sum_probs=70.6
Q ss_pred hhhccccchhhhhhccCCCcccccccc---hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccc
Q psy10684 186 SRYRAPFHQLRIAYGANKGKNYTEEED---RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATAD 262 (288)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~~~---gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~ 262 (288)
.+......++++++++....+..+... ++. ...+|+ .++-+.++..|. .+.++|+-...|+-||||+-|-
T Consensus 1215 iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~-~~~~~~--t~d~~dc~~~fk----~I~clll~~~~~~~GLNL~eA~ 1287 (1394)
T KOG0298|consen 1215 IKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIK-KQLDGE--TEDFDDCIICFK----SIDCLLLFVSKGSKGLNLIEAT 1287 (1394)
T ss_pred HhccCcCceEEEEEehHHHHHHHHHHHHhhhhH-hhhccC--Ccchhhhhhhcc----cceEEEEEeccCcccccHHhhh
Confidence 444556677777777777666666532 333 344555 346677788887 3778899999999999999999
Q ss_pred eEEEeCCCCChhhhhhhhhhh
Q psy10684 263 VVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 263 ~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
||++++|--||+.|.||++|.
T Consensus 1288 Hvfl~ePiLN~~~E~QAigRv 1308 (1394)
T KOG0298|consen 1288 HVFLVEPILNPGDEAQAIGRV 1308 (1394)
T ss_pred hhheeccccCchHHHhhhhhh
Confidence 999999999999999999998
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.49 E-value=7.4e-05 Score=64.48 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=47.5
Q ss_pred HHHHhhcCCCCCeeEEEEecccccccccccccc--------eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 115 RQINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 115 ~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~--------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
...+.|++ +...|+++ +++|+.|+.|+.-. .-|.+++||+.....|-.||+||.||..+.
T Consensus 52 ~e~~~F~~--g~k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P 119 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAP 119 (278)
T ss_pred HHHHHHhC--CCceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCC
Confidence 45679983 44556555 59999999999432 346889999999999999999999998653
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00018 Score=67.79 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=61.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|. +..+.+ |+++.+.+.|+++...++||++|+++++....|.++||
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr--~G~~~v-LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFR--EGKIRV-LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRT 426 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh--CCCCcE-EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCcc
Confidence 677788999999999999999998 445554 55679999999999999999999999999999999998
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0054 Score=57.38 Aligned_cols=219 Identities=15% Similarity=0.240 Sum_probs=127.3
Q ss_pred cCchHH-HHHHHHHHHHh--------CCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 56 NSGKMV-VLDKLLPKLKA--------QESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 56 ~s~K~~-~l~~ll~~~~~--------~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
.|+|.- +++-.+..+.. .+..+||-+..++....++..+... ++..+.++|+.+.....+.++
T Consensus 138 GSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---- 213 (519)
T KOG0331|consen 138 GSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---- 213 (519)
T ss_pred CCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----
Confidence 577754 45555555443 2568999999999999999887665 455778888887665544443
Q ss_pred CCCCeeEEEEecc-----cccccccccccceeEEecCC------CCcchh--hhhhHHHHH-------------------
Q psy10684 123 EGSDIFIFMLSTR-----AGGLGINLATADVVVLYDSD------WNPQMD--LQAMVREAK------------------- 170 (288)
Q Consensus 123 ~~~~~~vll~s~~-----~~~~Glnl~~a~~vi~~d~~------wnp~~~--~Qa~~R~~R------------------- 170 (288)
.++.|++.++. .-.--++|..++++++=+.+ +-|... ...+.|..|
T Consensus 214 --~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~ 291 (519)
T KOG0331|consen 214 --RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAED 291 (519)
T ss_pred --cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHH
Confidence 23344333322 11123456666666654322 111110 011111111
Q ss_pred ---------Hhhhc------chH------------HHHHHHhhhhc-cccchhhhhhccCCCcccccc---cchhhhccc
Q psy10684 171 ---------ILRRG------SIK------------KALEAKMSRYR-APFHQLRIAYGANKGKNYTEE---EDRYLYCRL 219 (288)
Q Consensus 171 ---------~Gq~~------~v~------------~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l 219 (288)
+|-.. .+. ..+.+.+..+. ....+++++-.....-+..+. ..+|...-|
T Consensus 292 fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~i 371 (519)
T KOG0331|consen 292 FLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAI 371 (519)
T ss_pred HhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeee
Confidence 01000 000 11111111111 122234444333322222221 235788899
Q ss_pred CCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 220 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 220 ~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|+.++.+|+..+..|. +....| |+.+..++=||++..-++||.||++=|....-+.++|-
T Consensus 372 HGd~sQ~eR~~~L~~Fr--eG~~~v-LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 372 HGDKSQSERDWVLKGFR--EGKSPV-LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRT 432 (519)
T ss_pred cccccHHHHHHHHHhcc--cCCcce-EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcc
Confidence 99999999999999998 444454 45668888999999999999999999998888888874
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0072 Score=60.00 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=59.3
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.....+.|++++++|.++.++|. +..++ .|+++.+.+.|+++...+.||++|.+-++..-.|.++||
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~--~G~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRa 370 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALR--DGELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRA 370 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHH--cCCce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhcccc
Confidence 34567899999999999999998 55555 467889999999999999999999999999999999998
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0027 Score=56.60 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=127.6
Q ss_pred cCchHH-HHHHHHHHHHhCC--CeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCee
Q psy10684 56 NSGKMV-VLDKLLPKLKAQE--SRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIF 128 (288)
Q Consensus 56 ~s~K~~-~l~~ll~~~~~~~--~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~ 128 (288)
.|+|.- +++-+|..+..+. -.++|-+..++....|.+.++.. |+.++.+-|++.. +......++ .+ .
T Consensus 108 GSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m--~~q~~~L~k--kP--h 181 (476)
T KOG0330|consen 108 GSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM--MLQANQLSK--KP--H 181 (476)
T ss_pred CCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH--HHHHHHhhc--CC--C
Confidence 688876 4566777766553 47999999999998888877665 7899999999953 444566665 23 3
Q ss_pred EEEEecccc------cccccccccceeEEecCCCCc-chhhhhhHHHHHH---h-h--------------------hcch
Q psy10684 129 IFMLSTRAG------GLGINLATADVVVLYDSDWNP-QMDLQAMVREAKI---L-R--------------------RGSI 177 (288)
Q Consensus 129 vll~s~~~~------~~Glnl~~a~~vi~~d~~wnp-~~~~Qa~~R~~R~---G-q--------------------~~~v 177 (288)
+++.++... ..|.+|....+.++=+.+-=- ..+.--.+.+-+. + | +.++
T Consensus 182 ilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~ 261 (476)
T KOG0330|consen 182 ILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPV 261 (476)
T ss_pred EEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCe
Confidence 445444332 346666555554442211000 0001111111111 1 1 1111
Q ss_pred H----------HHHHHHhhhhcc--------------ccchhhhhhccCCC---cccccccchhhhcccCCCccccchhH
Q psy10684 178 K----------KALEAKMSRYRA--------------PFHQLRIAYGANKG---KNYTEEEDRYLYCRLDGQTAHEDRQR 230 (288)
Q Consensus 178 ~----------~~i~~~~~~~~~--------------~~~~~~~~~~~~~~---~~~~e~~~gi~~~~l~G~~~~~~R~~ 230 (288)
+ .++......... ....++++...-.. ..+.-...|+....++|.|+++.|-.
T Consensus 262 ~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg 341 (476)
T KOG0330|consen 262 KVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLG 341 (476)
T ss_pred EEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHH
Confidence 1 111111000000 00111111111111 11222455888899999999999999
Q ss_pred HHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 231 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 231 ~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..+.|+ +..+.| |+.+..|+=||+.+.++.||.||-+-+-...-+.++|.
T Consensus 342 ~l~~Fk--~~~r~i-Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRt 391 (476)
T KOG0330|consen 342 ALNKFK--AGARSI-LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRT 391 (476)
T ss_pred HHHHHh--ccCCcE-EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccc
Confidence 999998 444444 55669999999999999999999997777776776664
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00094 Score=59.28 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=93.8
Q ss_pred cCchHHHHHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
++.--+.+.++.+.+... |..-||||-+...++.+...|+.+||..-.+|..+.+++|..+-..|- .+++.| ++.
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~--a~eiqv-iva 373 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI--AGEIQV-IVA 373 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc--ccceEE-EEE
Confidence 344455555555544332 678899999999999999999999999999999999999999998886 566666 778
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHH
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
|-+-|.|++-+++..||+-..|-+-..|-||-.|+.
T Consensus 374 tvafgmgidkpdvrfvihhsl~ksienyyqasaril 409 (695)
T KOG0353|consen 374 TVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARIL 409 (695)
T ss_pred EeeecccCCCCCeeEEEecccchhHHHHHHHHHHHH
Confidence 889999999999999999999999999999988863
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00031 Score=65.78 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=61.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|. +..+.|+ +++.+.+.|+++...++||+||++.++....|.++||
T Consensus 268 ~g~~~~~lhg~~~~~~R~~~l~~F~--~g~~~iL-VaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 268 DGIRSAAIHGNKSQGARTRALADFK--SGDIRVL-VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH--cCCCcEE-EEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 3667788999999999999999998 4555655 5668999999999999999999999999999999998
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00075 Score=66.65 Aligned_cols=110 Identities=21% Similarity=0.136 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---c---------------C-------------------cEE
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---R---------------G-------------------FKY 101 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~---------------~-------------------~~~ 101 (288)
+.....+++....+.+..++||++++......+..+.. . . ...
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34566677777778899999999999988887777762 0 0 123
Q ss_pred EEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe-----c-----CCCCcchhhhhhHHHHHH
Q psy10684 102 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY-----D-----SDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 102 ~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~-----d-----~~wnp~~~~Qa~~R~~R~ 171 (288)
..-|.+++.++|+-+=+.|+ .+.++| |++|.+.+.|+||+ |.+||.- + -+-++-.+.|..||+||.
T Consensus 318 afHhAGL~~~~R~~vE~~Fr--~g~ikV-lv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFR--KGKIKV-LVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred cccccCCCHHHHHHHHHHHh--cCCceE-EEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 45678899999999999997 677777 88999999999999 4455543 3 233456778999999999
Q ss_pred h
Q psy10684 172 L 172 (288)
Q Consensus 172 G 172 (288)
|
T Consensus 394 g 394 (766)
T COG1204 394 G 394 (766)
T ss_pred C
Confidence 8
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=61.24 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=91.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----C----cEEEEeeCCCCHHHHHHHHHh-hcCCCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----G----FKYCRLDGQTAHEDRQRQIND-FNMEGSD 126 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~----~~~~~~~G~~~~~~R~~~i~~-F~~~~~~ 126 (288)
.++|+.....++.++...+-++|-||..+..++.+....+.- + -....+.|+.+.++|.++-.. |. ++
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~---G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG---GK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC---Ce
Confidence 567787888888888889999999999999988776443322 1 123467899988888877654 54 33
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+- +++|.+...|+++...+-|+....|.+-+...|-.||+||-..
T Consensus 584 L~g-iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 584 LCG-IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeE-EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 333 7899999999999999999999999999999999999998754
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00049 Score=63.16 Aligned_cols=69 Identities=17% Similarity=0.360 Sum_probs=61.2
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|...++.|. +..+.| |+++...+.|+|+...+.||++|++.++..-.|.++||
T Consensus 290 ~~~~~~~~h~~~~~~~R~~i~~~f~--~g~~~v-LvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRa 358 (401)
T PTZ00424 290 RDFTVSCMHGDMDQKDRDLIMREFR--SGSTRV-LITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRS 358 (401)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCE-EEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccc
Confidence 3567888999999999999999998 455554 56778999999999999999999999999999999998
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.004 Score=62.92 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=82.5
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..+|.+|-.-.+-.+.+..+...|+.. ...+...||.|+..+-++++..|.+ +...| |+||..---|+|+++||+
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~--g~~dV-Lv~TTIIEtGIDIPnANT 876 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN--GEYDV-LVCTTIIETGIDIPNANT 876 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc--CCCCE-EEEeeeeecCcCCCCCce
Confidence 455668877788888899888888775 6678899999999999999999984 44445 888899999999999999
Q ss_pred eEEecCC-CCcchhhhhhHHHHHHhhh
Q psy10684 149 VVLYDSD-WNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 149 vi~~d~~-wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+|.-+.+ +--+..-|--||+||-.++
T Consensus 877 iIIe~AD~fGLsQLyQLRGRVGRS~~~ 903 (1139)
T COG1197 877 IIIERADKFGLAQLYQLRGRVGRSNKQ 903 (1139)
T ss_pred EEEeccccccHHHHHHhccccCCccce
Confidence 9998765 3446667888888888765
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0068 Score=57.72 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=127.9
Q ss_pred eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc------------c-cc
Q psy10684 76 RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL------------G-IN 142 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~------------G-ln 142 (288)
-+||-|.-...+.-=...|..+|+..+.+++..+.++|..++.+.. .+.++++.+++.-..- + +-
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~--~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLK--SGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHh--cCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 6778888777666666778889999999999999999999999997 5677888888653221 1 11
Q ss_pred ccccceeEEecCCCCcchhhhhhHHHHHHhh-----------hcchHHHHHHHh---------------------hhhcc
Q psy10684 143 LATADVVVLYDSDWNPQMDLQAMVREAKILR-----------RGSIKKALEAKM---------------------SRYRA 190 (288)
Q Consensus 143 l~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq-----------~~~v~~~i~~~~---------------------~~~~~ 190 (288)
+..|+.|--...+|-|+ | .++|+.+..-. +..+...|.+.+ .....
T Consensus 137 IDEAHCiSqWGhdFRP~-Y-~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~ 214 (590)
T COG0514 137 IDEAHCISQWGHDFRPD-Y-RRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGE 214 (590)
T ss_pred echHHHHhhcCCccCHh-H-HHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhccc
Confidence 22455554444455553 2 23444333211 111111111111 00000
Q ss_pred ccchh-hhh--------------hccCCCccccc--ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccc
Q psy10684 191 PFHQL-RIA--------------YGANKGKNYTE--EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 253 (288)
Q Consensus 191 ~~~~~-~~~--------------~~~~~~~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg 253 (288)
...+. .+. .......++.+ ...|+....++|+++.++|...-++|. ..+..|+ +.+.|=|
T Consensus 215 ~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~--~~~~~ii-VAT~AFG 291 (590)
T COG0514 215 PSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL--NDEIKVM-VATNAFG 291 (590)
T ss_pred HHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh--cCCCcEE-EEecccc
Confidence 01111 000 00011111111 134788999999999999999999998 4455554 4669999
Q ss_pred cCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 254 LGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 254 ~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+|-..--.||++|++=+..-.-|=++||
T Consensus 292 MGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 292 MGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred CccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 999999999999999999999999999999
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=62.09 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=57.7
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....+|+++.++|..+.+.|. +..++ .|+++.+...|+|+...+.||.++.+.+.+.-.|.++||
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK--~G~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRA 368 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALK--SGELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRA 368 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHH--hCCce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCC
Confidence 346789999999999999998 55666 455669999999999999999999999999999999998
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0011 Score=62.92 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.++++.|. +....|++.|...-|.|+++...++||++.|.-++....|.++|+
T Consensus 367 ~g~~v~~i~G~~~~~eR~~i~~~~~--~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~ 436 (501)
T PHA02558 367 VYDKVYYVSGEVDTEDRNEMKKIAE--GGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRV 436 (501)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHh--CCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcc
Confidence 3677888999999999999888887 455667777779999999999999999999999999999999998
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00084 Score=63.75 Aligned_cols=219 Identities=15% Similarity=0.237 Sum_probs=131.8
Q ss_pred ccCchHH-HHHHHHHHHH--hCCCe--EEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCC
Q psy10684 55 FNSGKMV-VLDKLLPKLK--AQESR--VLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 55 ~~s~K~~-~l~~ll~~~~--~~~~k--viIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~ 124 (288)
..|+|.. +++-+|+.+. ..... +||.+..++.+..+...+... ++.++.+.|+++...+...++.
T Consensus 75 TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~----- 149 (513)
T COG0513 75 TGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR----- 149 (513)
T ss_pred CCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-----
Confidence 3688876 4566777755 23222 899999999888887766443 5778999999987776655443
Q ss_pred CCeeEEEEecc----cccc-cccccccceeEEecCC--CCcchhhhhhHHHHHHh------------------------h
Q psy10684 125 SDIFIFMLSTR----AGGL-GINLATADVVVLYDSD--WNPQMDLQAMVREAKIL------------------------R 173 (288)
Q Consensus 125 ~~~~vll~s~~----~~~~-Glnl~~a~~vi~~d~~--wnp~~~~Qa~~R~~R~G------------------------q 173 (288)
++.+++.++. ...+ .+++....++|+=+-+ .+.+...+ +.++...- .
T Consensus 150 -~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~-i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l 227 (513)
T COG0513 150 -GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDD-IEKILKALPPDRQTLLFSATMPDDIRELARRYL 227 (513)
T ss_pred -CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHH-HHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc
Confidence 2455444433 2222 4777777777765422 11111111 11111110 0
Q ss_pred hcchH------------HHH----------HHHhh---hhcc--ccchhhhhhccCCCccc-c--cccchhhhcccCCCc
Q psy10684 174 RGSIK------------KAL----------EAKMS---RYRA--PFHQLRIAYGANKGKNY-T--EEEDRYLYCRLDGQT 223 (288)
Q Consensus 174 ~~~v~------------~~i----------~~~~~---~~~~--~~~~~~~~~~~~~~~~~-~--e~~~gi~~~~l~G~~ 223 (288)
..++. ..| .+++. .+.. ...+++++.......+. . -...|+....|+|++
T Consensus 228 ~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 228 NDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred cCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 01100 000 00100 0000 01113333222221111 1 124578899999999
Q ss_pred cccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 224 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 224 ~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++++|.+.++.|. +..+.|++.+ ..++-||+...-++||.||++.+|...-+.++|.
T Consensus 308 ~q~~R~~~l~~F~--~g~~~vLVaT-DvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRT 364 (513)
T COG0513 308 PQEERDRALEKFK--DGELRVLVAT-DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364 (513)
T ss_pred CHHHHHHHHHHHH--cCCCCEEEEe-chhhccCCccccceeEEccCCCCHHHheeccCcc
Confidence 9999999999998 6667776665 7789999999999999999999999999999986
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.062 Score=51.00 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=68.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..|+|....+.++......+.++||-+........+.+.|+.. +.....+||.++..+|.+....-.. +...| ++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~I-VVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILV-VIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCE-EEC
Confidence 3689999998888887788889999999999888888888764 6788999999999998877766652 33344 444
Q ss_pred cccccccccccccceeEEec
Q psy10684 134 TRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d 153 (288)
|..+- =+.+.....||+-|
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 44322 13344555555444
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0028 Score=50.96 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=54.3
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcC----cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc--ccccccccc
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRG----FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR--AGGLGINLA 144 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~----~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~--~~~~Glnl~ 144 (288)
...+.+++||.++-..++.+...+.... +. +... +...+.+.++.|+. ..+ .+|+++. .-++|+|+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q---~~~~~~~~l~~~~~-~~~--~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQ---GSKSRDELLEEFKR-GEG--AILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEES---TCCHHHHHHHHHCC-SSS--EEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeec---CcchHHHHHHHHHh-ccC--eEEEEEecccEEEeecCC
Confidence 3456899999999999999999887664 32 2222 24678899999994 332 2466666 889999999
Q ss_pred --ccceeEEecCCCCcc
Q psy10684 145 --TADVVVLYDSDWNPQ 159 (288)
Q Consensus 145 --~a~~vi~~d~~wnp~ 159 (288)
.+..||+...|+-+.
T Consensus 79 ~~~~r~vii~glPfp~~ 95 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPP 95 (167)
T ss_dssp CESEEEEEEES-----T
T ss_pred CchhheeeecCCCCCCC
Confidence 488999999998543
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.016 Score=56.93 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=72.8
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHH---------------------HHHHHHHhhcCCCCCe
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHE---------------------DRQRQINDFNMEGSDI 127 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~---------------------~R~~~i~~F~~~~~~~ 127 (288)
+.|.+|||.+...+..+...|... +...+.++|+.+.+ ...+++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~-~~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKK-EENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcC-CCCc
Confidence 479999999999998888777553 34566777765433 12478999983 3556
Q ss_pred eEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 128 FIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 128 ~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
++ |+..+-...|.|.+..+++++..|--+. ...|+++|+-|+
T Consensus 593 ~i-lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 593 KL-LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred eE-EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 66 5666999999999999999888776654 578999999995
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0023 Score=54.74 Aligned_cols=69 Identities=19% Similarity=0.410 Sum_probs=59.7
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..+....++|++++++|++++.+|+ ...-+|+ +++..=+-|++.+.-|.||.||.|-|+...-+.|+|+
T Consensus 289 ~nftVssmHGDm~qkERd~im~dFR--sg~SrvL-itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRS 357 (400)
T KOG0328|consen 289 ANFTVSSMHGDMEQKERDKIMNDFR--SGKSRVL-ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 357 (400)
T ss_pred hCceeeeccCCcchhHHHHHHHHhh--cCCceEE-EEechhhccCCcceeEEEEecCCCccHHHHhhhhccc
Confidence 3567788999999999999999999 4444554 4667777899999999999999999999999999997
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.018 Score=57.27 Aligned_cols=66 Identities=21% Similarity=0.140 Sum_probs=51.6
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC-----CCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-----SDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d-----~~wnp~~~~Qa~~Ra 283 (288)
.....+|+++.++|..+.+.|. +..++|+ +++.+.+.|+|+.+.+.||. || .+.++..-.|-++||
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr--~G~i~VL-vaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFR--DRLIKVI-SSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHH--cCCCeEE-EechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 4567799999999999999998 5666655 46688889999987766664 55 345666777999999
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.14 Score=49.25 Aligned_cols=200 Identities=15% Similarity=0.212 Sum_probs=123.2
Q ss_pred cCchHHH-HHHHHHHHHhCCCeEEEEecchHH----HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 56 NSGKMVV-LDKLLPKLKAQESRVLIFSQMTRM----LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~~~~kviIFs~~~~~----~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
.|+|.-. ++.++. ..+.|.++.+-....-. .+.+...|...|+....++|++..++|.+++++-. ++.+.++
T Consensus 293 GSGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~--~G~~~iv 369 (677)
T COG1200 293 GSGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA--SGEIDIV 369 (677)
T ss_pred CCCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh--CCCCCEE
Confidence 5888764 444443 46677888887765332 34566777777999999999999999999999997 3445554
Q ss_pred EEeccc-ccccccccccceeEEecCCCCcchhhhhhHHHHHH-----hhhcc----------------------------
Q psy10684 131 MLSTRA-GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI-----LRRGS---------------------------- 176 (288)
Q Consensus 131 l~s~~~-~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~-----Gq~~~---------------------------- 176 (288)
+-|.| --..+++.+.-.||. +++||.|=.-|. |.+.+
T Consensus 370 -VGTHALiQd~V~F~~LgLVIi--------DEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 370 -VGTHALIQDKVEFHNLGLVII--------DEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred -EEcchhhhcceeecceeEEEE--------eccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc
Confidence 44433 333444444444443 345555433332 22100
Q ss_pred --------h---------HHHHHHHhhhhccccchhhhhhccCCCcc------ccc---c----cchhhhcccCCCcccc
Q psy10684 177 --------I---------KKALEAKMSRYRAPFHQLRIAYGANKGKN------YTE---E----EDRYLYCRLDGQTAHE 226 (288)
Q Consensus 177 --------v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~e---~----~~gi~~~~l~G~~~~~ 226 (288)
+ ...+.+.+.+.....+++..-..--..++ ..+ + ..++....++|.|+.+
T Consensus 441 ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~ 520 (677)
T COG1200 441 ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPA 520 (677)
T ss_pred cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChH
Confidence 0 12233333333334444432221111111 000 0 1145577889999999
Q ss_pred chhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 227 DRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 227 ~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
++++++.+|. +.++. +|+|++.=-+|.|..-|+-.++.++.
T Consensus 521 eKd~vM~~Fk--~~e~~-ILVaTTVIEVGVdVPnATvMVIe~AE 561 (677)
T COG1200 521 EKDAVMEAFK--EGEID-ILVATTVIEVGVDVPNATVMVIENAE 561 (677)
T ss_pred HHHHHHHHHH--cCCCc-EEEEeeEEEecccCCCCeEEEEechh
Confidence 9999999998 44444 56688999999999999999999875
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.034 Score=55.27 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=79.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcccc-ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEHLV-FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~~~-~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|+++.+-+.+.-+.... ...+.....+ ....|+.++.+-+.+..+.|..|||-+.+.+.-+.|...|...|+++-.+
T Consensus 390 Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 390 EFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 466666666554432221 1111222222 23579999999999888999999999999999999999999999999999
Q ss_pred eCCC-CHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 105 DGQT-AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 105 ~G~~-~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
+... ..++-.+++.+=. .++ -+-++|.-+|||-|+.
T Consensus 470 NAk~~~~~~EA~IIa~AG--~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQAG--RKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHhcC--CCC--cEEEeccCCCCCcCEe
Confidence 9973 3333444555432 222 2477999999997766
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.048 Score=55.16 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
.+.+.|.++. ..+.+++||+.+..+++.+...|.. .+++. +..+.. ..|.+++++|+.. +..| |+.+++
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~--~~~i-Llgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG--EKAI-LLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC--CCeE-EEEcce
Confidence 3444454433 3456899999999999999998875 24442 333332 5789999999842 2233 678899
Q ss_pred ccccccccc--cceeEEecCCCCcch
Q psy10684 137 GGLGINLAT--ADVVVLYDSDWNPQM 160 (288)
Q Consensus 137 ~~~Glnl~~--a~~vi~~d~~wnp~~ 160 (288)
.++|+|+.+ ...||+...|+-+..
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~ 760 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPK 760 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCC
Confidence 999999995 457788888875433
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.027 Score=55.12 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=78.4
Q ss_pred CeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.|.||||.....++.+...|... |--+..++|+.. +-+..|+.|.. ......+.++.+....|+|.+.+..+
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeee
Confidence 59999999999999999998765 334677888874 45567899984 33334458899999999999999999
Q ss_pred EEecCCCCcchhhhhhHHHHHH
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+++..-.+-..+.|.+||.-|+
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999887
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.026 Score=56.44 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHhCCCeEEEEecchHHHHHHHHHHhhc----C-------------------cEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 70 LKAQESRVLIFSQMTRMLDILEDYCYWR----G-------------------FKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 70 ~~~~~~kviIFs~~~~~~~~l~~~l~~~----~-------------------~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
...+|+.|+||+..+...-..++.|... | .....-|.++..++|+-.=+.|. .+.
T Consensus 345 ~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~--~G~ 422 (1230)
T KOG0952|consen 345 FLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK--EGH 422 (1230)
T ss_pred HHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh--cCC
Confidence 4567899999999988766666665443 1 12344577788889998889997 456
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcch----------hhhhhHHHHHHh
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM----------DLQAMVREAKIL 172 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~----------~~Qa~~R~~R~G 172 (288)
++| |++|...+-|.||++-..+|---.-|+++. -.|-.||+||..
T Consensus 423 i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 423 IKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred ceE-EEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 666 899999999999997766666666677654 469999999974
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.053 Score=53.23 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=66.3
Q ss_pred HHHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 62 VLDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 62 ~l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
.+...+..+ ...+.+++||..+-.++..+...+...... .+...|..+ +...+++|.....+ .+++.+..-++
T Consensus 466 ~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~E 540 (654)
T COG1199 466 KLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccC
Confidence 344444433 334558999999999999999998876652 445555553 44889999844332 56899999999
Q ss_pred ccccc--ccceeEEecCCCC
Q psy10684 140 GINLA--TADVVVLYDSDWN 157 (288)
Q Consensus 140 Glnl~--~a~~vi~~d~~wn 157 (288)
|+|+. ....||+...|+-
T Consensus 541 GVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred cccCCCCCeeEEEEEecCCC
Confidence 99999 4588999998885
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.36 Score=45.03 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=57.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+...-++|+.++.+|-+.+..|. +..+.+ |+++..++-||++.+-..||.|+-|-.--...+.++|.
T Consensus 449 lgl~agElHGsLtQ~QRlesL~kFk--~~eidv-LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRLESLEKFK--KEEIDV-LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred hhchhhhhcccccHHHHHHHHHHHH--hccCCE-EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 3677788999999999999999998 555555 45668888999999999999999987777777777764
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0097 Score=60.24 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=58.7
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
......+|+++.++|..+.+.|. +..+++ |+++.+.+.|+|+...+.||.++++.++..-.|.++||
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk--~G~i~v-LVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRa 381 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLK--RGELKV-VVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRA 381 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHH--cCCCeE-EEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccC
Confidence 35667899999999999999998 555554 55668889999999999999999999999999999998
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=51.02 Aligned_cols=108 Identities=18% Similarity=0.313 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.+...+-.++.. ...|+++.|||+...+.+.+++.+...+..+..++|..+..+ ++.+. +.+| ++-|.+-
T Consensus 267 ~~~tF~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~i 336 (824)
T PF02399_consen 267 DETTFFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVI 336 (824)
T ss_pred chhhHHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceE
Confidence 334444445544 567899999999999999999999999999999998877663 24443 4455 6777777
Q ss_pred ccccccc--ccceeEEecCC--CCcch--hhhhhHHHHHHhhhc
Q psy10684 138 GLGINLA--TADVVVLYDSD--WNPQM--DLQAMVREAKILRRG 175 (288)
Q Consensus 138 ~~Glnl~--~a~~vi~~d~~--wnp~~--~~Qa~~R~~R~Gq~~ 175 (288)
..|+++. ..+.++.|=.+ .-|.. ..|.+||+..+...+
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccCe
Confidence 8888887 34556656222 23443 579999998887553
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.045 Score=54.01 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=93.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++++-+......|..|||-+.+.+.-+.+.+.|.+.|++...+...-. .|+.-+-.+....+. .-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~ga---VTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGA---VTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCc---cccccc
Confidence 457899999999999999999999999999999999999999999988988775 455555555412222 367999
Q ss_pred cccccccccccc-----------eeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLATAD-----------VVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~~a~-----------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
-+|+|-++.-.. +||=-+..-+.....|--||+||.|-.+..+
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh
Confidence 999999998444 4666666666677778889999999777653
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.018 Score=53.56 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=59.5
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+.++.+++|+|++++|..+...|. .+.+. | |+.+..++-||+|..-.-||=|||+..|+.....|+|.
T Consensus 470 ~~~k~~rLHGsm~QeeRts~f~~Fs-~~~~~-V-LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 470 MDLKFYRLHGSMEQEERTSVFQEFS-HSRRA-V-LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred hcceEEEecCchhHHHHHHHHHhhc-cccce-E-EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 3567899999999999999999998 33332 4 55568888999999999999999999999999999985
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.073 Score=54.39 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=54.9
Q ss_pred cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE-----ecCC---C---CcchhhhhhHH
Q psy10684 99 FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-----YDSD---W---NPQMDLQAMVR 167 (288)
Q Consensus 99 ~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~-----~d~~---w---np~~~~Qa~~R 167 (288)
..+..-|.+++..+|...=+.|. ++.+.| +++|...+.|+||+. ++||. |||. | .|-...|+.||
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~--~g~iqv-lvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFA--DGHIQV-LVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHh--cCceeE-EEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 35778899999999999999997 566677 899999999999984 55554 3332 3 35666799999
Q ss_pred HHHHh
Q psy10684 168 EAKIL 172 (288)
Q Consensus 168 ~~R~G 172 (288)
++|.+
T Consensus 684 agrp~ 688 (1674)
T KOG0951|consen 684 AGRPQ 688 (1674)
T ss_pred cCCCc
Confidence 98875
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.023 Score=56.22 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=68.6
Q ss_pred HHHhCCCeEEEEecchHHHHHHHHHHhhc--------------------------------------CcEEEEeeCCCCH
Q psy10684 69 KLKAQESRVLIFSQMTRMLDILEDYCYWR--------------------------------------GFKYCRLDGQTAH 110 (288)
Q Consensus 69 ~~~~~~~kviIFs~~~~~~~~l~~~l~~~--------------------------------------~~~~~~~~G~~~~ 110 (288)
+...++.++||||..+.-++.++..+.+. ...+...|.+.+.
T Consensus 455 et~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~ 534 (1008)
T KOG0950|consen 455 ETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTS 534 (1008)
T ss_pred hhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceeccccccc
Confidence 33445667999999988777665332111 1234556777888
Q ss_pred HHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC-----CCcchhhhhhHHHHHHhh
Q psy10684 111 EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD-----WNPQMDLQAMVREAKILR 173 (288)
Q Consensus 111 ~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~-----wnp~~~~Qa~~R~~R~Gq 173 (288)
++|..+=..|+ .+.+.| +++|...+-|.||+. .+||.=-|. -....|.|.+||++|+|-
T Consensus 535 eER~~iE~afr--~g~i~v-l~aTSTlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 535 EEREIIEAAFR--EGNIFV-LVATSTLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred chHHHHHHHHH--hcCeEE-EEecchhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 89987777887 445555 677777999999985 455544332 344678999999999973
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.016 Score=54.13 Aligned_cols=66 Identities=18% Similarity=0.392 Sum_probs=58.7
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
...++|+++..+|.+.++.|. ... ...|++.+.++.|.++..|+.+|++.|.=+|....|.++|..
T Consensus 309 ~~~it~~t~~~eR~~il~~fr-~g~--~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 309 VEAITGETPKEEREAILERFR-TGG--IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHH-cCC--CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhc
Confidence 348999999999999999998 433 456677799999999999999999999999999999999974
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.039 Score=54.43 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=59.2
Q ss_pred CcEEEEeeCCCCHHHHHHHHHhhcC-CCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 98 GFKYCRLDGQTAHEDRQRQINDFNM-EGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 98 ~~~~~~~~G~~~~~~R~~~i~~F~~-~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
.+.+-.++|.|+..+|.+.+..-+. +...|+| |-+.++.++|++.+.-+-||+|+|--.--.-.|++||+-|-.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 4566778999999999776654432 2334555 889999999999999999999999776677789999998864
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.015 Score=50.33 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=42.6
Q ss_pred HHHhhcccCCCCeeEEEEeecccccCCCccccc--------eEEEeCCCCChhhhhhhhhhh
Q psy10684 230 RQINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 230 ~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~--------~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+.|+ +.+..|+++| .||++|+.|.+-. .-|+++++|+....-|-++|.
T Consensus 52 ~e~~~F~--~g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~ 110 (278)
T PF13871_consen 52 AEKQAFM--DGEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRT 110 (278)
T ss_pred HHHHHHh--CCCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccc
Confidence 4667888 6677889998 9999999999742 246889999999999999997
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.25 Score=45.81 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=83.7
Q ss_pred CchHHHHHH-HHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 57 SGKMVVLDK-LLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 57 s~K~~~l~~-ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..+++++.+ ++..+. ....++|||..+--..-.|...|+..++.++.++--++..+-.++-..|. .+..++||.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~--~G~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF--HGRKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH--cCCceEEEEE
Confidence 456666655 555554 23478999988777777888999999999999999999999999999998 4566777776
Q ss_pred cccc-cccccccccceeEEecCCCCcchhhhhhHHH
Q psy10684 134 TRAG-GLGINLATADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 134 ~~~~-~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
=..- =+=..+.++.+||+|.+|-+|.-|...+.-.
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~ 393 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNML 393 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhh
Confidence 4431 1234466789999999999999998766444
|
; GO: 0005634 nucleus |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.025 Score=52.31 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=59.5
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
...--.|.|.+++.+|-+++..|+ .++.+..+.+| +.|.+.++|.-||.+|-...+. .---|.|..+|.
T Consensus 562 kl~KpfIYG~Tsq~ERm~ILqnFq-~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRI 631 (776)
T KOG1123|consen 562 KLGKPFIYGPTSQNERMKILQNFQ-TNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRI 631 (776)
T ss_pred HcCCceEECCCchhHHHHHHHhcc-cCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHH
Confidence 344457899999999999999999 89999888889 9999999999999999998884 344567988887
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.044 Score=54.81 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=83.3
Q ss_pred CchHHHHHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhhc-------CcEEEEeeCCCCHHHHHHHHHhhcCCCCCe
Q psy10684 57 SGKMVVLDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYWR-------GFKYCRLDGQTAHEDRQRQINDFNMEGSDI 127 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~-------~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~ 127 (288)
.-+...+..++..+.+. ...+|||-.-...+..+...|..+ .+-...+|+.++..+.+.+ |+...+++
T Consensus 394 ~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~ 470 (924)
T KOG0920|consen 394 EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGT 470 (924)
T ss_pred cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCc
Confidence 35667777777776554 357999999999999888888643 3667889999998777665 55455666
Q ss_pred eEEEEecccccccccccccceeEEe--------cCC---------C-CcchhhhhhHHHHHH
Q psy10684 128 FIFMLSTRAGGLGINLATADVVVLY--------DSD---------W-NPQMDLQAMVREAKI 171 (288)
Q Consensus 128 ~vll~s~~~~~~Glnl~~a~~vi~~--------d~~---------w-np~~~~Qa~~R~~R~ 171 (288)
+-++++|..+..++++.++-+||-. |+. | .-+.-.||.||+||.
T Consensus 471 RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv 532 (924)
T KOG0920|consen 471 RKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV 532 (924)
T ss_pred chhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc
Confidence 6669999999999999999888754 322 2 234456888888776
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.02 Score=56.99 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=36.6
Q ss_pred cccCchHHHHHHHHHHHHhC---------CCeEEEEecchHHHHHHHHHHhh
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQ---------ESRVLIFSQMTRMLDILEDYCYW 96 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~---------~~kviIFs~~~~~~~~l~~~l~~ 96 (288)
....||+..|.++|+++..+ +.++||||++..++..|.++|..
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45799999999999886543 36799999999999999998865
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=51.97 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
++...+.... +....++||-.-...++...+.|.+ ..+..+.++|.++.++..++ |+....+.+-++++|++
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNI 322 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccc
Confidence 4444444433 3346899999999999999998887 45889999999999988774 55333443434899999
Q ss_pred ccccccccccceeEEe
Q psy10684 137 GGLGINLATADVVVLY 152 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~ 152 (288)
+-.+|++.+..+||--
T Consensus 323 AETSLTI~gIr~VIDs 338 (845)
T COG1643 323 AETSLTIPGIRYVIDS 338 (845)
T ss_pred cccceeeCCeEEEecC
Confidence 9999999999999854
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.51 Score=44.07 Aligned_cols=220 Identities=13% Similarity=0.212 Sum_probs=124.9
Q ss_pred ccCchHHHHHH-HHHHHH-------hCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 55 FNSGKMVVLDK-LLPKLK-------AQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 55 ~~s~K~~~l~~-ll~~~~-------~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
..|+|..+++. ++.++. .++.=.||.+...+.+..+...+++ .|+..+.++|+.+.-+..+.++
T Consensus 269 tgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---- 344 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---- 344 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----
Confidence 37888887553 332322 1233456777777776666655544 4899999999999877766654
Q ss_pred CCCCeeEEEEecc-----cccccccccccceeEEecCC--CCcchh-----------------------hhhhHHHHHHh
Q psy10684 123 EGSDIFIFMLSTR-----AGGLGINLATADVVVLYDSD--WNPQMD-----------------------LQAMVREAKIL 172 (288)
Q Consensus 123 ~~~~~~vll~s~~-----~~~~Glnl~~a~~vi~~d~~--wnp~~~-----------------------~Qa~~R~~R~G 172 (288)
...+ ++++++. +--.+.|+..++.+++=+.. ++-.-+ .+.|-|..|--
T Consensus 345 ~g~E--ivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~ 422 (731)
T KOG0339|consen 345 EGAE--IVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDI 422 (731)
T ss_pred cCCe--EEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHH
Confidence 1233 3333332 33457888888888875432 121212 23344444432
Q ss_pred hhcchH----------HHHHHHh-------hhhccccchhhhhhccCCCccccc------------ccchhhhcccCCCc
Q psy10684 173 RRGSIK----------KALEAKM-------SRYRAPFHQLRIAYGANKGKNYTE------------EEDRYLYCRLDGQT 223 (288)
Q Consensus 173 q~~~v~----------~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~e------------~~~gi~~~~l~G~~ 223 (288)
-.++|. +-|+..+ .++.-..+.++.+....+..-+.. ...++....++|++
T Consensus 423 L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdk 502 (731)
T KOG0339|consen 423 LSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDK 502 (731)
T ss_pred hcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCch
Confidence 111110 1111110 011111111222211111111111 23588999999999
Q ss_pred cccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 224 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 224 ~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+.+|.+.+.+|. .....|++. +.....||+...-..|++||-.-.-..-.|.|+|-
T Consensus 503 dqa~rn~~ls~fK--kk~~~Vlva-tDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 503 DQAERNEVLSKFK--KKRKPVLVA-TDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred hhHHHHHHHHHHh--hcCCceEEE-eeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 9999999999998 344455554 46777899999999999998876666666877764
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.046 Score=52.18 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=63.1
Q ss_pred ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 210 ~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...|+....++|-|++.+|.-+++.+. +..++| |+|+.-.+-|++-..+|.||.+|++-|-....+.|+||
T Consensus 293 ~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRA 363 (980)
T KOG4284|consen 293 KSSGLDVTFISGAMSQKDRLLAVDQLR--AFRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRA 363 (980)
T ss_pred hccCCCeEEeccccchhHHHHHHHHhh--hceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhc
Confidence 356899999999999999999999987 666665 55778888999999999999999999999999999999
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.032 Score=55.52 Aligned_cols=68 Identities=21% Similarity=0.138 Sum_probs=57.4
Q ss_pred EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC-CCCcchhhhhhHHHHHHhh
Q psy10684 103 RLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS-DWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 103 ~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~-~wnp~~~~Qa~~R~~R~Gq 173 (288)
.-|.+++...|+.+---|+ .+...| |++|.+.+.|+|+++-+.|+..|. ..||-.|.|+.||+||-|=
T Consensus 967 ~HHaglNr~yR~~VEvLFR--~g~L~V-lfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGF 1035 (1330)
T KOG0949|consen 967 VHHAGLNRKYRSLVEVLFR--QGHLQV-LFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGF 1035 (1330)
T ss_pred ccccccchHHHHHHHHHhh--cCceEE-EEEeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccc
Confidence 4688899899998888897 455556 899999999999998877777774 5799999999999999983
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.43 Score=48.14 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccc
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 141 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gl 141 (288)
.+.+.|..+...+.+++|+..+.++++.+...|....++. ...|... .|.+++++|+..++ .| |+.+.+-.+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~--~v-LlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ--QI-LLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC--eE-EEecchhhCCC
Confidence 4555555555556788888888888898888887654443 5555432 35678999984322 33 77779999999
Q ss_pred ccc--ccceeEEecCCCCcc
Q psy10684 142 NLA--TADVVVLYDSDWNPQ 159 (288)
Q Consensus 142 nl~--~a~~vi~~d~~wnp~ 159 (288)
|++ .+..||+.-.|+-+.
T Consensus 709 D~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred CCCCCCeEEEEEecCCCCCC
Confidence 996 456678888776533
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.1 Score=40.90 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=68.7
Q ss_pred cchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC
Q psy10684 192 FHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 268 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d 268 (288)
-.+++++.......+.... -.|+....++|...+.+|..+++.|. ...++|++ .+..++-||++..-.||+.||
T Consensus 465 ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 465 NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK--SGEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh--cCceEEEE-EechhhcCCCchhcceeeccC
Confidence 3445555555544443332 24888899999999999999999998 66777655 557788999999999999999
Q ss_pred CCCChhhhhhhhhhh
Q psy10684 269 SDWNPQMDLQAMVRT 283 (288)
Q Consensus 269 ~~wnp~~~~Qa~~Ra 283 (288)
-+-|-...-+.++|.
T Consensus 542 FP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRT 556 (629)
T ss_pred CCccHHHHHHHhccc
Confidence 999988877777764
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.45 Score=48.73 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=64.1
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCc--EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 61 VVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGF--KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 61 ~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~--~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
..+.+.|..+. ..+.+++|+..+..++..+...|..... .+..+.-+++...|.+++++|+.... .| |+.+.+-
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~--~i-LlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK--AI-LLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC--eE-EEecCcc
Confidence 34455554443 3455788887788888888888865422 12223323333568899999984322 33 6678999
Q ss_pred cccccccc--cceeEEecCCCC-cc
Q psy10684 138 GLGINLAT--ADVVVLYDSDWN-PQ 159 (288)
Q Consensus 138 ~~Glnl~~--a~~vi~~d~~wn-p~ 159 (288)
.+|+|+++ ...||+.-.|+. |.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999995 589999998984 44
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.062 Score=49.81 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=52.8
Q ss_pred CCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 220 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 220 ~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+-+|++.+-.+.|+.|+ .+++.| |+++..|-.||++...|.||+|||-=.|----|.++|.
T Consensus 406 ~~GMsQkeQ~eiI~~Fr--~Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRT 466 (542)
T COG1111 406 DKGMSQKEQKEIIDQFR--KGEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRT 466 (542)
T ss_pred ccccCHHHHHHHHHHHh--cCCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcc
Confidence 45688889999999998 566555 55779999999999999999999998888888999986
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.06 Score=52.44 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=52.9
Q ss_pred CCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 221 GQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 221 G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
-+|+..+-++.++.|+ +++..| |+++..|-.||+...+|.||.||-.=||.---|+++||
T Consensus 456 ~gmtqk~Q~evl~~Fr--~G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRg 515 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFR--DGEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRG 515 (746)
T ss_pred cccCHHHHHHHHHHHh--CCCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhccc
Confidence 4677788889999999 566554 55779999999999999999999999999999999997
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.055 Score=49.69 Aligned_cols=223 Identities=17% Similarity=0.245 Sum_probs=128.3
Q ss_pred ccccCchHHH-HHHHHHHHHhCC-------CeEEEEecchHHHHHHHHH----Hhh-cCcEEEEeeCCCCHHHHHHHHHh
Q psy10684 53 LVFNSGKMVV-LDKLLPKLKAQE-------SRVLIFSQMTRMLDILEDY----CYW-RGFKYCRLDGQTAHEDRQRQIND 119 (288)
Q Consensus 53 ~~~~s~K~~~-l~~ll~~~~~~~-------~kviIFs~~~~~~~~l~~~----l~~-~~~~~~~~~G~~~~~~R~~~i~~ 119 (288)
....|+|.-+ ++-+++.+..+. --.||.+..++....|... +.+ .++++..+-|+.+.++ -+..
T Consensus 50 avTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~ 126 (567)
T KOG0345|consen 50 AVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKT 126 (567)
T ss_pred cCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHH
Confidence 3446888765 555665552221 1479999999886666543 333 4788899999976654 4677
Q ss_pred hcCCCCCeeEEEEeccc-------ccccccccccceeEEecCCC-------------------C------cchhhhhhHH
Q psy10684 120 FNMEGSDIFIFMLSTRA-------GGLGINLATADVVVLYDSDW-------------------N------PQMDLQAMVR 167 (288)
Q Consensus 120 F~~~~~~~~vll~s~~~-------~~~Glnl~~a~~vi~~d~~w-------------------n------p~~~~Qa~~R 167 (288)
|..+ ++.|++.++.- -+.+++......+|+=+.+- + .++-.|...-
T Consensus 127 fkee--~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~d 204 (567)
T KOG0345|consen 127 FKEE--GPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVED 204 (567)
T ss_pred HHHh--CCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHH
Confidence 8733 33444444331 23455544555555433211 0 1122233344
Q ss_pred HHHHhhhcchHHHH---------------------HHHhhhhc-----cccchhhhhhccCCCccc----ccc-cchhhh
Q psy10684 168 EAKILRRGSIKKAL---------------------EAKMSRYR-----APFHQLRIAYGANKGKNY----TEE-EDRYLY 216 (288)
Q Consensus 168 ~~R~Gq~~~v~~~i---------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~e~-~~gi~~ 216 (288)
..|.|-.++|...+ +++...+. ...++++++...-...++ .+. ......
T Consensus 205 L~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i 284 (567)
T KOG0345|consen 205 LARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREI 284 (567)
T ss_pred HHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcE
Confidence 44455444332111 11111110 111222222221111111 111 134667
Q ss_pred cccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 217 ~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.++|++....|.+.+.+|. ..+. .+ |+++..++=||+...-+.|+-+||+-+|..--+..+|+
T Consensus 285 ~~iHGK~~q~~R~k~~~~F~-~~~~-~v-l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 285 FSIHGKMSQKARAKVLEAFR-KLSN-GV-LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred EEecchhcchhHHHHHHHHH-hccC-ce-EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 88999999999999999999 4332 34 45668888999999999999999999999998888876
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.053 Score=50.81 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=47.9
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
..+.|.|+.|++-|.+....||.++.++.|++.| .|=|.||||. -.+||+++.-
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~sl~ 436 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFYSLI 436 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEeecc
Confidence 4789999999999999999999767888988888 8999999996 5789999876
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.052 Score=50.53 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=66.1
Q ss_pred hhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC
Q psy10684 195 LRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW 271 (288)
Q Consensus 195 ~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w 271 (288)
++++.......+... ++.||..+.|+|+-++++|..++..|. + ....||+ -+.++|=|++..--|+||.||-.-
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr-~-~t~dIlV-aTDvAgRGIDIpnVSlVinydmak 596 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR-E-GTGDILV-ATDVAGRGIDIPNVSLVINYDMAK 596 (673)
T ss_pred EEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH-h-cCCCEEE-EecccccCCCCCccceeeecchhh
Confidence 344444444444333 356899999999999999999999999 3 2223444 458889999999999999999988
Q ss_pred Chhhhhhhhhhh
Q psy10684 272 NPQMDLQAMVRT 283 (288)
Q Consensus 272 np~~~~Qa~~Ra 283 (288)
+-....+.|+|.
T Consensus 597 sieDYtHRIGRT 608 (673)
T KOG0333|consen 597 SIEDYTHRIGRT 608 (673)
T ss_pred hHHHHHHHhccc
Confidence 888888888875
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.23 Score=49.61 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCC-CeEEEEecchHHHHHHHHHHhhcCcE---------------------------------------E
Q psy10684 62 VLDKLLPKLKAQE-SRVLIFSQMTRMLDILEDYCYWRGFK---------------------------------------Y 101 (288)
Q Consensus 62 ~l~~ll~~~~~~~-~kviIFs~~~~~~~~l~~~l~~~~~~---------------------------------------~ 101 (288)
....++..+...+ -.+|||+-++.-||.-+++|...++. .
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 3555665555443 47999999999888888887655432 1
Q ss_pred EEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec---------CCCCcchhhhhhHHHHHHh
Q psy10684 102 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD---------SDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 102 ~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d---------~~wnp~~~~Qa~~R~~R~G 172 (288)
...||+.=+--++-+=--|+ .+=++| |++|..-+.|+|++.-+ |++-. ...+|..|.|..||+||-|
T Consensus 634 aVHH~GlLPivKE~VE~LFq--rGlVKV-LFATETFAMGVNMPARt-vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQ--RGLVKV-LFATETFAMGVNMPART-VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhhcccchHHHHHHHHHHHh--cCceEE-EeehhhhhhhcCCCcee-EEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 22233332222222223454 334555 89999999999999544 44432 2457999999999999998
Q ss_pred h
Q psy10684 173 R 173 (288)
Q Consensus 173 q 173 (288)
-
T Consensus 710 l 710 (1248)
T KOG0947|consen 710 L 710 (1248)
T ss_pred c
Confidence 4
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.89 Score=45.07 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCC--CCCeeEEEEecccc
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNME--GSDIFIFMLSTRAG 137 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~--~~~~~vll~s~~~~ 137 (288)
..+.+.|..+...+.+++||..+-.+++.+...|... +. .+...|.. .|.++++.|+.. ..+..| |+.+..-
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~~---~~~~ll~~f~~~~~~~~~~V-L~g~~sf 595 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGDQ---PRQRLLEKHKKRVDEGEGSV-LFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCCc---hHHHHHHHHHHHhccCCCeE-EEEeccc
Confidence 3555555554445556788887888888888888643 33 34556643 577888878621 122234 6667889
Q ss_pred ccccccc--ccceeEEecCCCCc
Q psy10684 138 GLGINLA--TADVVVLYDSDWNP 158 (288)
Q Consensus 138 ~~Glnl~--~a~~vi~~d~~wnp 158 (288)
.+|+|++ .++.||+.-.|+-+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~ 618 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAV 618 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCC
Confidence 9999998 47999999988853
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.55 Score=45.13 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=76.4
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc--Cc------EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR--GF------KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT 145 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~--~~------~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~ 145 (288)
..-++||-.-.+.++...+.|.+. .. -+..++|.++.++..++ |....++.+-++++|+.+...+++.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecc
Confidence 457999999999999988888765 11 24679999999887655 65444466667999999999999999
Q ss_pred cceeEEec----CCCCcc-----------hhhhhhHHHHHHhhhcch
Q psy10684 146 ADVVVLYD----SDWNPQ-----------MDLQAMVREAKILRRGSI 177 (288)
Q Consensus 146 a~~vi~~d----~~wnp~-----------~~~Qa~~R~~R~Gq~~~v 177 (288)
..+||--. ..|||. .-.||.-|+||.|++++-
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pG 381 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPG 381 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCc
Confidence 99987432 234542 345788888888888875
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.55 Score=47.39 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecc---hHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe-
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQM---TRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS- 133 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~---~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s- 133 (288)
.-...+.++++. -|.-.|||.+. .+..+.|.+.|+.+|+++..++.. ..+.++.|. .+++.+++-.
T Consensus 322 ~~~e~~~elvk~---lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~--~GeidvLVGvA 391 (1187)
T COG1110 322 ESLEKVVELVKK---LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFE--EGEVDVLVGVA 391 (1187)
T ss_pred ccHHHHHHHHHH---hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhc--cCceeEEEEec
Confidence 344455555554 45688999999 889999999999999999998873 256899997 5666665543
Q ss_pred --ccccccccccc-ccceeEEecCC
Q psy10684 134 --TRAGGLGINLA-TADVVVLYDSD 155 (288)
Q Consensus 134 --~~~~~~Glnl~-~a~~vi~~d~~ 155 (288)
..+.-+||||+ .+.++|++..|
T Consensus 392 syYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccccceeecCCchhheeEEEEecCC
Confidence 45788999999 79999999987
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.1 Score=43.56 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=56.4
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh------cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCe
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW------RGFKYCRLDGQTAHEDRQRQINDFNMEGSDI 127 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~------~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~ 127 (288)
...|+|.....-+.......+.++||.+.....+..+...|.. .++....++|+++..++.+.++.+.. +..
T Consensus 102 PTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~ 179 (1638)
T PRK14701 102 PTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN--GDF 179 (1638)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc--CCC
Confidence 3478999853333322334567999999999988877777765 25677889999999998888888863 334
Q ss_pred eEEEEecc
Q psy10684 128 FIFMLSTR 135 (288)
Q Consensus 128 ~vll~s~~ 135 (288)
.|++.++.
T Consensus 180 dILV~TPg 187 (1638)
T PRK14701 180 DILVTTAQ 187 (1638)
T ss_pred CEEEECCc
Confidence 55555544
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.12 Score=50.97 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=49.9
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC---------CChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD---------WNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~---------wnp~~~~Qa~~Ra 283 (288)
....+|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+ .+||+.|.. +.+..-.|.++||
T Consensus 288 v~~~hagl~~~eR~~ve~~f~--~g~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRA 360 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFR--NRYIKV-IVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRA 360 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHH--cCCCeE-EEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcC
Confidence 456799999999999999998 556665 556689999999875 788887643 3444456999998
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.67 Score=47.07 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=119.2
Q ss_pred EEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc--ccc-----ccc-----
Q psy10684 78 LIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL--GIN-----LAT----- 145 (288)
Q Consensus 78 iIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~--Gln-----l~~----- 145 (288)
||-|.-...+.--...|...+|+.+.++|.++..+|..+.+....+.+.++++.+++..... ++. |..
T Consensus 308 vVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~la 387 (941)
T KOG0351|consen 308 VVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLA 387 (941)
T ss_pred EEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeE
Confidence 44455555555555666778999999999999999999999999777789999998774333 322 111
Q ss_pred ------cceeEEecCCCCcchhhhhhHHHHHHh-----hhcchHHHHHHHhhhh-ccccchhhhh---------------
Q psy10684 146 ------ADVVVLYDSDWNPQMDLQAMVREAKIL-----RRGSIKKALEAKMSRY-RAPFHQLRIA--------------- 198 (288)
Q Consensus 146 ------a~~vi~~d~~wnp~~~~Qa~~R~~R~G-----q~~~v~~~i~~~~~~~-~~~~~~~~~~--------------- 198 (288)
|+.|=.+-.++-|.--.+..-|....+ -|-+....+.+.+.+- ......+...
T Consensus 388 l~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~ 467 (941)
T KOG0351|consen 388 LFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKT 467 (941)
T ss_pred EEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEecc
Confidence 111212222333332222222222222 1111112222221111 0000000000
Q ss_pred -------------------------hccCCCccccc--ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecc
Q psy10684 199 -------------------------YGANKGKNYTE--EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 251 (288)
Q Consensus 199 -------------------------~~~~~~~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~a 251 (288)
....+...+.. ...++....++.+++..+|+.+-.+|. ...+.|. +-+-|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~--~~~~~Vi-vATVA 544 (941)
T KOG0351|consen 468 DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWM--SDKIRVI-VATVA 544 (941)
T ss_pred CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHh--cCCCeEE-EEEee
Confidence 00000000000 123567778899999999999999998 3445544 45588
Q ss_pred cccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 252 GGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 252 gg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
=|.|++-..---||.+..+-+-.-.-|..+||
T Consensus 545 FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRA 576 (941)
T KOG0351|consen 545 FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRA 576 (941)
T ss_pred ccCCCCCCceeEEEECCCchhHHHHHHhcccc
Confidence 99999999999999999997777777999999
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.075 Score=46.56 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=63.5
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.|+..-+++.+|.++.|.++-.+|. +..|+.+++| .--.-|++.++.|.||.+|-+-||......|+|+
T Consensus 344 elGyscyyiHakM~Q~hRNrVFHdFr--~G~crnLVct-DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRs 413 (459)
T KOG0326|consen 344 ELGYSCYYIHAKMAQEHRNRVFHDFR--NGKCRNLVCT-DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 413 (459)
T ss_pred hccchhhHHHHHHHHhhhhhhhhhhh--ccccceeeeh-hhhhcccccceeeEEEecCCCCCHHHHHHHccCC
Confidence 56899999999999999999999998 7778888877 4555799999999999999999999999999998
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.3 Score=44.70 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=55.7
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----CcEEE---EeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----GFKYC---RLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~---~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
...|+|....+-++..+...+.+++|.+..+..+..+...+... ++... .+||+++..++.+.++.+.. ++
T Consensus 101 pTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~ 178 (1171)
T TIGR01054 101 PTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN--GD 178 (1171)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc--CC
Confidence 34789998665555555556789999999999888777665543 44433 57999999998888888873 33
Q ss_pred eeEEEEecc
Q psy10684 127 IFIFMLSTR 135 (288)
Q Consensus 127 ~~vll~s~~ 135 (288)
..|++.++.
T Consensus 179 ~dIlV~Tp~ 187 (1171)
T TIGR01054 179 FDILITTTM 187 (1171)
T ss_pred CCEEEECHH
Confidence 445554443
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.6 Score=43.21 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=69.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.|+|....+..+......+.++||.+........+.+.|+.. |.....+||+++..+|.+.......+ ...| ++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g--~~~I-VVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG--EAKV-VIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC--CCCE-EEec
Confidence 689999988888777777889999999999988888888764 78899999999999998887777633 3445 4444
Q ss_pred ccccccccccccceeEEec
Q psy10684 135 RAGGLGINLATADVVVLYD 153 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d 153 (288)
..+. =+.+.....||.-|
T Consensus 249 rsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred cHHh-cccccCCCEEEEEC
Confidence 4222 23444555555544
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.13 Score=50.48 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred hhhhccccchhhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc
Q psy10684 185 MSRYRAPFHQLRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA 261 (288)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a 261 (288)
+.++.....+++++.......+... .+.|+....++|+++..+|.+.+.+|. ...+.| ++++..-+-|+++...
T Consensus 435 I~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~V-LV~t~~L~rGfDiP~v 511 (655)
T TIGR00631 435 IRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR--LGEFDV-LVGINLLREGLDLPEV 511 (655)
T ss_pred HHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh--cCCceE-EEEcChhcCCeeeCCC
Confidence 3334444555555543332222111 234777788899999999999999997 445554 4566888899999999
Q ss_pred ceEEEeCCC-----CChhhhhhhhhhh
Q psy10684 262 DVVVLYDSD-----WNPQMDLQAMVRT 283 (288)
Q Consensus 262 ~~v~~~d~~-----wnp~~~~Qa~~Ra 283 (288)
+.|+++|.+ -+...--|-++||
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRa 538 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRA 538 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCC
Confidence 999999954 2444556999987
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.19 Score=45.04 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=57.2
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC------Chhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW------NPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w------np~~~~Qa~~Ra 283 (288)
.+|.....++|.+..++|..++++|+ ...-+| |+++..-+-|++...-|.||.||.+- .|.+..+.|+|+
T Consensus 352 ~~Gh~V~~l~G~l~~~~R~~ii~~Fr--~g~~kV-LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRt 427 (477)
T KOG0332|consen 352 AEGHQVSLLHGDLTVEQRAAIIDRFR--EGKEKV-LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRT 427 (477)
T ss_pred hcCceeEEeeccchhHHHHHHHHHHh--cCcceE-EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccc
Confidence 45788899999999999999999999 333354 55778888999999999999999874 244555888887
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.5 Score=42.75 Aligned_cols=96 Identities=8% Similarity=0.069 Sum_probs=61.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCC-CCeeEEEEecccccccccc--------
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEG-SDIFIFMLSTRAGGLGINL-------- 143 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~-~~~~vll~s~~~~~~Glnl-------- 143 (288)
.|.-.+.|+++.. +..+...|...---.+.+.|.. ..|..++++|+... .+..-+|+.|.+..+|+|+
T Consensus 470 ~G~~lvLfTS~~~-~~~~~~~l~~~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 470 QGGTLVLTTAFSH-ISAIGQLVELGIPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred CCCEEEEechHHH-HHHHHHHHHhhcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3556666776554 4556666654321235556644 25677999998420 1112248899999999999
Q ss_pred --cccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 144 --ATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 144 --~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
...+.||+...|+-|.... .|..|+-++
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~---a~~~~~~~~ 576 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSL---SMLKRIRKT 576 (636)
T ss_pred CCCcccEEEEEeCCCCcCChH---HHHHHHHhc
Confidence 3689999999998874433 666666443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.18 Score=44.91 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=61.3
Q ss_pred ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 210 ~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+..+++...+++.|++.+|-.++.+|. ....++++ -+..++-||+...-+.|+.+|.+-.|-..-+.++|.
T Consensus 275 ~~le~r~~~lHs~m~Q~eR~~aLsrFr--s~~~~ili-aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 275 KNLEVRVVSLHSQMPQKERLAALSRFR--SNAARILI-ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRT 345 (442)
T ss_pred hhhceeeeehhhcchHHHHHHHHHHHh--hcCccEEE-EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcch
Confidence 455788899999999999999999998 44456555 458888999999999999999999999999888875
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.14 Score=50.21 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=67.0
Q ss_pred hhhhccccchhhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc
Q psy10684 185 MSRYRAPFHQLRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA 261 (288)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a 261 (288)
+.++.....+++++.......+... .+.|+....++|+++..+|.+++.+|. ...+.| ++++..-+-|+++...
T Consensus 439 L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~v-lV~t~~L~rGfdlp~v 515 (652)
T PRK05298 439 IRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDV-LVGINLLREGLDIPEV 515 (652)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH--cCCceE-EEEeCHHhCCccccCC
Confidence 3344444555555443322222111 244778888899999999999999997 444444 4566888899999999
Q ss_pred ceEEEeCCC-----CChhhhhhhhhhh
Q psy10684 262 DVVVLYDSD-----WNPQMDLQAMVRT 283 (288)
Q Consensus 262 ~~v~~~d~~-----wnp~~~~Qa~~Ra 283 (288)
+.|+++|.+ -++..--|.++|+
T Consensus 516 ~lVii~d~eifG~~~~~~~yiqr~GR~ 542 (652)
T PRK05298 516 SLVAILDADKEGFLRSERSLIQTIGRA 542 (652)
T ss_pred cEEEEeCCcccccCCCHHHHHHHhccc
Confidence 999999963 3666777999997
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=91.26 E-value=2.5 Score=38.82 Aligned_cols=214 Identities=15% Similarity=0.134 Sum_probs=126.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.++|-- --.|..+...+ =.||||.....+.-=-..|....+++-.+++.++..+|.+++.......+.+++|.+++.
T Consensus 46 GaGKSL--CyQLPaL~~~g-ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE 122 (641)
T KOG0352|consen 46 GAGKSL--CYQLPALVHGG-ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPE 122 (641)
T ss_pred CCchhh--hhhchHHHhCC-eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchh
Confidence 455533 22333344444 678898877665555566777889999999999999999999999988889999888876
Q ss_pred ccccc-c----c-c-----------cccceeEEecCCCCcchhhhhhHHHHHHhhhc-----------------ch----
Q psy10684 136 AGGLG-I----N-L-----------ATADVVVLYDSDWNPQMDLQAMVREAKILRRG-----------------SI---- 177 (288)
Q Consensus 136 ~~~~G-l----n-l-----------~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~-----------------~v---- 177 (288)
-++.. . | | ..|+.|=....++-|.-. |.|.-+ .|
T Consensus 123 ~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL--------~LG~LRS~~~~vpwvALTATA~~~VqEDi 194 (641)
T KOG0352|consen 123 GAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYL--------TLGSLRSVCPGVPWVALTATANAKVQEDI 194 (641)
T ss_pred hhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchh--------hhhhHHhhCCCCceEEeecccChhHHHHH
Confidence 54432 1 1 0 112222222223333211 122111 11
Q ss_pred ----------------------------HHHHHHHhhhhccccchhhhhh----ccCCCc-----------c------cc
Q psy10684 178 ----------------------------KKALEAKMSRYRAPFHQLRIAY----GANKGK-----------N------YT 208 (288)
Q Consensus 178 ----------------------------~~~i~~~~~~~~~~~~~~~~~~----~~~~~~-----------~------~~ 208 (288)
++.|++.+.-+..+....+... ...++. + +.
T Consensus 195 ~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~ 274 (641)
T KOG0352|consen 195 AFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIM 274 (641)
T ss_pred HHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHH
Confidence 2333333332222221111100 000000 0 00
Q ss_pred cccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 209 EEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 209 e~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....|+....++.+....+|..+.+++- +.++.|+.. +-.=|.|.+-..--.||..+++-|-+..-|--+||
T Consensus 275 l~~~Gi~A~AYHAGLK~~ERTeVQe~WM--~~~~PvI~A-T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRA 346 (641)
T KOG0352|consen 275 LEIAGIPAMAYHAGLKKKERTEVQEKWM--NNEIPVIAA-TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRA 346 (641)
T ss_pred hhhcCcchHHHhcccccchhHHHHHHHh--cCCCCEEEE-EeccccccCCcceeEEEecCchhhhHHHHHhcccc
Confidence 1123667777788889999999999997 444555443 35567888888888888888888888888988888
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.26 Score=44.50 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=48.4
Q ss_pred hhcccCCCccccchhHH----HhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQ----INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~----i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....++|.++..+|.+. +++|. +.... .|+++.+.+.|+++ ..+.+|.++.+ +..-.|.++|+
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~--~~~~~-ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~ 316 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMK--KNEKF-VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRL 316 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhc--CCCCe-EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccc
Confidence 46678999999998764 78887 34444 46677899999999 47888887654 56667999997
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.27 Score=44.05 Aligned_cols=70 Identities=16% Similarity=0.308 Sum_probs=59.9
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..++....++|.+.+.+|..+..+|+ ..+.+|++ ++.-.+-|++++..+.|+.||.+=|+.+.-..++|+
T Consensus 285 ~~~~~~s~~~~d~~q~~R~~~~~ef~--~gssrvlI-ttdl~argidv~~~slvinydlP~~~~~yihR~gr~ 354 (397)
T KOG0327|consen 285 AHGFTVSAIHGDMEQNERDTLMREFR--SGSSRVLI-TTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRA 354 (397)
T ss_pred hCCceEEEeecccchhhhhHHHHHhh--cCCceEEe-eccccccccchhhcceeeeeccccchhhhhhhcccc
Confidence 45778888999999999999999998 44446555 556677999999999999999999999988888887
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=90.98 E-value=4.4 Score=42.66 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=49.3
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEe---ecccccCCCccc-cceEEEeCCCC------Chhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS---TRAGGLGINLAT-ADVVVLYDSDW------NPQMDLQAM 280 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s---~~agg~glnl~~-a~~v~~~d~~w------np~~~~Qa~ 280 (288)
..|+....++|++ ++.+++|. +.++.|++.+ +...+-||++.. -.+||+||.|- .......++
T Consensus 353 ~~gi~v~~~hg~l-----~~~l~~F~--~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~ 425 (1176)
T PRK09401 353 DLGINAELAISGF-----ERKFEKFE--EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLL 425 (1176)
T ss_pred HCCCcEEEEeCcH-----HHHHHHHH--CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHH
Confidence 3478888899999 33569997 6677787775 577899999998 89999999985 334444555
Q ss_pred hhh
Q psy10684 281 VRT 283 (288)
Q Consensus 281 ~Ra 283 (288)
.|.
T Consensus 426 ~r~ 428 (1176)
T PRK09401 426 LRL 428 (1176)
T ss_pred HHH
Confidence 554
|
|
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=90.73 E-value=6.2 Score=38.52 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=78.8
Q ss_pred HhcCCCccchHHHHHHHHH------HHhhcCCCCCC--------CCCCCCCCCCCCccccccCc-hHHHHHHHHHHHHhC
Q psy10684 9 VVNGAGKLEKMRLQNILMQ------LRKCSNHPYLF--------DGAEPGPPYTTDEHLVFNSG-KMVVLDKLLPKLKAQ 73 (288)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~------Lrq~~~hP~l~--------~~~~~~~~~~~~~~~~~~s~-K~~~l~~ll~~~~~~ 73 (288)
.++||.+.....+.+.|.. ...-|+|-.-. .....+.+..-. .....|+ =++.|-..+..+..-
T Consensus 549 vLAGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~~gpsg~p~eft-f~~R~s~~~l~~l~~~~~nL~~~ 627 (821)
T KOG1133|consen 549 VLAGGTMEPVDELREQLFPGCPERISPFSCSHVIPPENILPLVVSSGPSGQPLEFT-FETRESPEMIKDLGSSISNLSNA 627 (821)
T ss_pred eecCCccccHHHHHHHhcccchhhccceecccccChhheeeeeeccCCCCCceEEE-eeccCChHHHHHHHHHHHHHHhh
Confidence 3568888888887777765 34466774321 111111111100 0011222 222333333333222
Q ss_pred -CCeEEEEecchHHHHHHHHHHhhcCcE-------EEEeeCCCCHHHHHHHHHhhcCCCCC-eeEEEEe--ccccccccc
Q psy10684 74 -ESRVLIFSQMTRMLDILEDYCYWRGFK-------YCRLDGQTAHEDRQRQINDFNMEGSD-IFIFMLS--TRAGGLGIN 142 (288)
Q Consensus 74 -~~kviIFs~~~~~~~~l~~~l~~~~~~-------~~~~~G~~~~~~R~~~i~~F~~~~~~-~~vll~s--~~~~~~Gln 142 (288)
..-||+|..+-+.+..+.+.++..|+- .+.+....+ -..+++.|...... .-.+|++ -.-.++|+|
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 468999999999999999998877652 222322222 24456666521111 1123433 345678999
Q ss_pred cc--ccceeEEecCCCC
Q psy10684 143 LA--TADVVVLYDSDWN 157 (288)
Q Consensus 143 l~--~a~~vi~~d~~wn 157 (288)
+. -+..|+.+..|+-
T Consensus 705 F~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccccEEEEeecCCC
Confidence 98 5888999988874
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.23 Score=49.37 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=48.7
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE-------eCCCCChhh-hhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------YDSDWNPQM-DLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~-------~d~~wnp~~-~~Qa~~Ra 283 (288)
.....+|+++.++|..+.+.|. +..++| |+++.+-+.|+|+.+.+.||. ++....|.. -.|-++||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~--~G~i~V-LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFR--EGLIKV-ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHH--CCCCeE-EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhcc
Confidence 4667899999999999999998 556665 556688899999987666653 222233433 37999998
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=89.95 E-value=1 Score=43.44 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=64.3
Q ss_pred cCchHHHHHHHHHHH---H--hCCCeEEEEecchHHHHHHHHHHhhc---------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKL---K--AQESRVLIFSQMTRMLDILEDYCYWR---------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~---~--~~~~kviIFs~~~~~~~~l~~~l~~~---------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..+-.+++...+..+ . +...-+|||-.-.+.++..++.|... .+-.+.++.+.+.+...++ |.
T Consensus 450 ~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---Fe 526 (902)
T KOG0923|consen 450 KAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FE 526 (902)
T ss_pred cCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cC
Confidence 344455555554432 1 22457899988777777666665443 3568899999998877655 55
Q ss_pred CCCCCeeEEEEecccccccccccccceeEE
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
...++.+-+++.|+.+-..|++.+..+||-
T Consensus 527 PtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 527 PTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred CCCCCceeEEEeecchhhceeecCeEEEec
Confidence 444555556889999999999999998874
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=2.7 Score=41.41 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=64.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-C-cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-G-FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~-~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.|+|.+..++++......|..+||-..-......+...|+.. | ..+..+|++++..+|.+.-.+... +..+| ++-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~I-ViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARV-VVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcE-EEE
Confidence 689999999999999899999999999999988888888765 3 678999999999999988888763 44455 444
Q ss_pred ccc
Q psy10684 134 TRA 136 (288)
Q Consensus 134 ~~~ 136 (288)
|.+
T Consensus 247 tRS 249 (665)
T PRK14873 247 TRS 249 (665)
T ss_pred cce
Confidence 443
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=89.62 E-value=3.1 Score=41.34 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=63.8
Q ss_pred HHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCc-------EEEEeeCCCCHHHHHHHHHhhcCC--CCCeeEEE
Q psy10684 62 VLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGF-------KYCRLDGQTAHEDRQRQINDFNME--GSDIFIFM 131 (288)
Q Consensus 62 ~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~-------~~~~~~G~~~~~~R~~~i~~F~~~--~~~~~vll 131 (288)
.+.+.|.++.. ....++||..+-..++.+...+...++ ..+.+.+.- ..++.+++++|+.. .++-. +|
T Consensus 509 ~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~ga-vL 586 (705)
T TIGR00604 509 NLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGA-VL 586 (705)
T ss_pred HHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCce-EE
Confidence 44455544433 357889998888888888877765432 233444432 26789999999732 11122 35
Q ss_pred Eec--cccccccccc--ccceeEEecCCC-Ccc
Q psy10684 132 LST--RAGGLGINLA--TADVVVLYDSDW-NPQ 159 (288)
Q Consensus 132 ~s~--~~~~~Glnl~--~a~~vi~~d~~w-np~ 159 (288)
++. ..-++|+|+. .+..||.+..|+ +|.
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~ 619 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTE 619 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCC
Confidence 555 6789999999 489999999998 543
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.43 Score=44.35 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=58.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..++.+..++|..+..+|.++++.|. +..+.+++. +....=||+...-.|||.||.+=+-.-.-+.|+|.
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr--~g~~pvlVa-T~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFR--NGKAPVLVA-TNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRT 428 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhh--cCCcceEEE-ehhhhcCCCCCCCceeEEeecCcchhhHHHhcccc
Confidence 45789999999999999999999998 555565554 47778999999999999999997755555777764
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.41 Score=48.14 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=55.2
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC----CChhh-------------
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD----WNPQM------------- 275 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~----wnp~~------------- 275 (288)
++....++|+++.++|.++++.|. +...+| ++++..+..|+++...++||.++.. +||..
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~--~G~rkV-lVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDP--QGRRKV-VLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcc--cCCeEE-EEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 577888999999999999999987 444554 5678999999999999999999865 56654
Q ss_pred -hhhhhhhh
Q psy10684 276 -DLQAMVRT 283 (288)
Q Consensus 276 -~~Qa~~Ra 283 (288)
-.|..+||
T Consensus 313 sa~QR~GRA 321 (819)
T TIGR01970 313 SATQRAGRA 321 (819)
T ss_pred HHHhhhhhc
Confidence 34777777
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=89.26 E-value=4 Score=31.71 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc--cceeEEecCCCC
Q psy10684 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT--ADVVVLYDSDWN 157 (288)
Q Consensus 108 ~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~--a~~vi~~d~~wn 157 (288)
....+...+++.|+.. .+.. +|+++...++|+|+++ +..||+...|+-
T Consensus 31 ~~~~~~~~~l~~f~~~-~~~~-iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 31 EDGKETGKLLEKYVEA-CENA-ILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred CChhHHHHHHHHHHHc-CCCE-EEEEccceecceecCCCCeeEEEEEecCCC
Confidence 3344678899999833 2223 4677666999999994 678999998874
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.63 Score=48.46 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=54.1
Q ss_pred cccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 217 ~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
..++|+++ ++++.+++|. + +....+++|...-++|.+....+.|+++.|.-++..-.|.++|+.
T Consensus 735 ~~itg~~~--~~~~li~~Fk-~-~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 735 IKITGSID--KPDQLIRRFK-N-ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred EEEeCCcc--chHHHHHHHh-C-CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 34677765 6788999998 4 344467778899999999999999999999999999999999984
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=88.65 E-value=2 Score=42.21 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=63.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE---------------------------------------EEEeeCCCCHHH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK---------------------------------------YCRLDGQTAHED 112 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~---------------------------------------~~~~~G~~~~~~ 112 (288)
.+...|||||-++..++..+..+.+..++ ...-|++.=+--
T Consensus 381 ~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIl 460 (1041)
T KOG0948|consen 381 RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPIL 460 (1041)
T ss_pred hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHH
Confidence 45689999999999999888666544332 112233322222
Q ss_pred HHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec---------CCCCcchhhhhhHHHHHHhhh
Q psy10684 113 RQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD---------SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 113 R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d---------~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
++-+=-.|+ .+=++| |..|..-+-|||++. .+|++-. .|-+.+.|.|.-||+||-|-.
T Consensus 461 KE~IEILFq--EGLvKv-LFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D 527 (1041)
T KOG0948|consen 461 KEVIEILFQ--EGLVKV-LFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID 527 (1041)
T ss_pred HHHHHHHHh--ccHHHH-HHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCCC
Confidence 222222454 333455 789999999999985 4455442 244678999999999999843
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=88.39 E-value=29 Score=36.16 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=121.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.-+|.+..++-.=.....|.+|.|.+..+-.+..=.+-++.+ +++...+.-=.+.++...+++.-. ++.+.+++
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la--~G~vDIvI 702 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLA--EGKVDIVI 702 (1139)
T ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHh--cCCccEEE
Confidence 457888777766666677899999998876655444444443 677777777788889999999987 56777777
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHH-------------------------hhhc-----------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI-------------------------LRRG----------- 175 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~-------------------------Gq~~----------- 175 (288)
-+-+..+.++...+-.-+|. .++|+.|=-|.- .-.|
T Consensus 703 GTHrLL~kdv~FkdLGLlII--------DEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP 774 (1139)
T COG1197 703 GTHRLLSKDVKFKDLGLLII--------DEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP 774 (1139)
T ss_pred echHhhCCCcEEecCCeEEE--------echhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC
Confidence 66666666666555555544 245544321110 0000
Q ss_pred ----ch--------HHHHHHHhhhhccccchhhhhhccCCC-cccccc----cchhhhcccCCCccccchhHHHhhcccC
Q psy10684 176 ----SI--------KKALEAKMSRYRAPFHQLRIAYGANKG-KNYTEE----EDRYLYCRLDGQTAHEDRQRQINDFNME 238 (288)
Q Consensus 176 ----~v--------~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~----~~gi~~~~l~G~~~~~~R~~~i~~f~~~ 238 (288)
+| ...|.+-+.+-.....++..-...-.. .+..++ --..++...+|.|+..+-.+.+.+|.
T Consensus 775 ~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~-- 852 (1139)
T COG1197 775 EDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY-- 852 (1139)
T ss_pred CCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH--
Confidence 00 122322222222222222111111111 111111 11356778899999999999999998
Q ss_pred CCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 239 GSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 239 ~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
+....|++++ +-=-.|+++.-||++|+-+-+
T Consensus 853 ~g~~dVLv~T-TIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 853 NGEYDVLVCT-TIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred cCCCCEEEEe-eeeecCcCCCCCceEEEeccc
Confidence 5555566654 666789999999999997665
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.36 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=57.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|.....++|.-.+++|..+|+.|. ...-.| |+.+..++-||+...-.|||.||-+=.-.+.-+.|+|.
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr--~gkKDV-LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRT 512 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFR--AGKKDV-LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRT 512 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHh--cCCCce-EEEecchhccCCCccchhhccCCChHHHHHHHHHhccc
Confidence 4788899999999999999999998 333234 45668889999999999999999886666666888774
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.55 E-value=2.5 Score=41.82 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=65.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..|+|.+..++++......|..+||-..-......+...|+.+ |.+...+|++.+..+|.+.-.+.. .+..+|++-+
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~--~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRAR--RGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHh--cCCceEEEEe
Confidence 3699999999999999999999999998888888777777766 789999999999999999988887 4555564433
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.2 Score=44.05 Aligned_cols=88 Identities=18% Similarity=0.301 Sum_probs=63.5
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCCHHH--HHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC--CCcc-
Q psy10684 87 LDILEDYCYWR--GFKYCRLDGQTAHED--RQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD--WNPQ- 159 (288)
Q Consensus 87 ~~~l~~~l~~~--~~~~~~~~G~~~~~~--R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~--wnp~- 159 (288)
.+.+++.|... +.++.++++.+...+ -...++.|..+..+ | |+-|.--+.|+|+++.+-|..+|.+ .+..
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d--I-LiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~D 569 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD--I-LIGTQMIAKGHDFPNVTLVGVLDADTGLGSPD 569 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC--e-eecchhhhcCCCcccceEEEEEechhhhcCCC
Confidence 34566666654 778899998876543 45789999854444 3 8899999999999999888777654 2222
Q ss_pred ---------hhhhhhHHHHHHhhhcch
Q psy10684 160 ---------MDLQAMVREAKILRRGSI 177 (288)
Q Consensus 160 ---------~~~Qa~~R~~R~Gq~~~v 177 (288)
.+.|..||++|.+..+.|
T Consensus 570 fRA~Er~fqll~QvaGRAgR~~~~G~V 596 (730)
T COG1198 570 FRASERTFQLLMQVAGRAGRAGKPGEV 596 (730)
T ss_pred cchHHHHHHHHHHHHhhhccCCCCCeE
Confidence 335999999998665543
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=87.27 E-value=0.99 Score=43.79 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHH---H--hCCCeEEEEecchHH----HHHHHHHHhhc------CcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 58 GKMVVLDKLLPKL---K--AQESRVLIFSQMTRM----LDILEDYCYWR------GFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 58 ~K~~~l~~ll~~~---~--~~~~kviIFs~~~~~----~~~l~~~l~~~------~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
+--+++...++.. . ....-+|||-.-.+. ++.|...|... ++.+..++..++.....+ -|+.
T Consensus 542 p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~k---iFq~ 618 (1042)
T KOG0924|consen 542 PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAK---IFQK 618 (1042)
T ss_pred chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhh---hccc
Confidence 3344555555542 1 223578899765543 44444444332 577888999998776654 4665
Q ss_pred CCCCeeEEEEecccccccccccccceeEEecC----CCCcch-----------hhhhhHHHHHHhhhcc
Q psy10684 123 EGSDIFIFMLSTRAGGLGINLATADVVVLYDS----DWNPQM-----------DLQAMVREAKILRRGS 176 (288)
Q Consensus 123 ~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~----~wnp~~-----------~~Qa~~R~~R~Gq~~~ 176 (288)
..++++-.+++|..+-..|++.+..+||-... -+||.. -.+|--|+||.|++++
T Consensus 619 a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p 687 (1042)
T KOG0924|consen 619 AEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP 687 (1042)
T ss_pred CCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC
Confidence 66777777999999999999999999986542 234322 2344456666666654
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.59 Score=46.85 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=49.2
Q ss_pred cccCCCccccchh-----HHHhhcccC----CC-----CeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQ-----RQINDFNME----GS-----DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 217 ~~l~G~~~~~~R~-----~~i~~f~~~----~~-----~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..++|.+++.+|. +++++|. . .. .-..+|+++.+.+.|+++.. +++|....++ ....|.++|
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk-~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGR 373 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFL-PQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGR 373 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHh-ccccccccccccccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcc
Confidence 7889999999999 7788897 3 11 11356889999999999986 8888866553 466699998
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 374 t 374 (844)
T TIGR02621 374 V 374 (844)
T ss_pred c
Confidence 6
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.53 Score=45.92 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=51.8
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc--------ceEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA--------DVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a--------~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..++|+.. +|.+.+..|. ..+. . +++++..+|=|+++.-. .+||.+|.+=++-.+.|.++|
T Consensus 495 ~~gi~~~~Lhg~~~--~rE~~ii~~a-g~~g-~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GR 569 (656)
T PRK12898 495 EAGLPHQVLNAKQD--AEEAAIVARA-GQRG-R-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGR 569 (656)
T ss_pred HCCCCEEEeeCCcH--HHHHHHHHHc-CCCC-c-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhccc
Confidence 45888999999865 5555555555 2222 2 56788999999998733 299999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 570 T 570 (656)
T PRK12898 570 C 570 (656)
T ss_pred c
Confidence 8
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.75 Score=45.90 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=55.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc---cccc-----eEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL---ATAD-----VVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl---~~a~-----~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..++|++...++.....+++ .. . +++++..+|=|+++ ...+ +||.+|++=|+-++.|.++|
T Consensus 450 ~~gi~~~~L~~~~~~~e~~~i~~ag~--~g--~-VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GR 524 (790)
T PRK09200 450 EAGIPHNLLNAKNAAKEAQIIAEAGQ--KG--A-VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGR 524 (790)
T ss_pred HCCCCEEEecCCccHHHHHHHHHcCC--CC--e-EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhcc
Confidence 45889999999988777766666655 22 3 55677999999998 4566 99999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 525 t 525 (790)
T PRK09200 525 S 525 (790)
T ss_pred c
Confidence 8
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=86.71 E-value=3.8 Score=31.85 Aligned_cols=56 Identities=9% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc--ccccccccc--cceeEEecCCCCc
Q psy10684 102 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA--GGLGINLAT--ADVVVLYDSDWNP 158 (288)
Q Consensus 102 ~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~--~~~Glnl~~--a~~vi~~d~~wnp 158 (288)
+.+.+.. ..+..++++.|+........+|+++.. .++|+|+++ +..||+...|+-+
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 3344433 235578899998422210123444444 799999994 7899999988743
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.9 Score=43.01 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=52.6
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
++....++|+.++.+|++.+++|. ...+.|++++ ..-+=|+.+.++|.||.||-+=.-.-.-..|+|
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR--~g~IwvLicT-dll~RGiDf~gvn~VInyD~p~s~~syihrIGR 478 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFR--IGKIWVLICT-DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGR 478 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHh--ccCeeEEEeh-hhhhccccccCcceEEecCCCchhHHHHHHhhc
Confidence 566888999999999999999998 6777777765 666778999999999999987433333334444
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=85.34 E-value=0.91 Score=42.36 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
.+.+..++|..+.+.|.+.+.+|. ..++.++++| .+.+=|+++..-+.||.|||+-.-...-+.++|
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~--~g~i~vLIcS-D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GR 523 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFA--KGDINVLICS-DALARGIDVNDVDNVINYDPPASDKTYVHRAGR 523 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHh--cCCceEEEeh-hhhhcCCcccccceEeecCCCchhhHHHHhhcc
Confidence 345556789999999999999998 7778888888 888899999999999999998444444444444
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=0.87 Score=45.88 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=45.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
++....++|+++.++|++++..|. +...+ +++++..+..|+++...++||.++..
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~--~G~rk-VlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAP--AGRRK-VVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhcccc--CCCeE-EEEecchHHhcccccCceEEEECCCc
Confidence 567788999999999999998886 44445 56677889999999999999997755
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.69 E-value=0.61 Score=43.87 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=71.4
Q ss_pred chHHHHHHHhhhhccccchhhhhhccCCCc-cccc--ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeeccc
Q psy10684 176 SIKKALEAKMSRYRAPFHQLRIAYGANKGK-NYTE--EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 252 (288)
Q Consensus 176 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~ag 252 (288)
.|++.+.+...+.+. .+++++......+. ++++ .+.|++..+++.+...-+|.+++.+.+. .... .|+.+.--
T Consensus 431 QvdDL~~EI~~r~~~-~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~D-vLVGINLL 506 (663)
T COG0556 431 QVDDLLSEIRKRVAK-NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFD-VLVGINLL 506 (663)
T ss_pred cHHHHHHHHHHHHhc-CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCcc-EEEeehhh
Confidence 344444443333333 35555544443332 3333 3679999999999999999999999983 3333 45567778
Q ss_pred ccCCCccccceEEEeCCCCChhhhh-----hhhhhh
Q psy10684 253 GLGINLATADVVVLYDSDWNPQMDL-----QAMVRT 283 (288)
Q Consensus 253 g~glnl~~a~~v~~~d~~wnp~~~~-----Qa~~Ra 283 (288)
..||++.-.+.|.++|-+-....-. |-|+||
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRA 542 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHH
Confidence 8999999999999999995544433 999999
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=84.13 E-value=0.63 Score=45.88 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHhhcCCCCCeeEEEEecccccccccccccceeEEec-----------------CCC-CcchhhhhhHHHHHHhh
Q psy10684 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD-----------------SDW-NPQMDLQAMVREAKILR 173 (288)
Q Consensus 116 ~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d-----------------~~w-np~~~~Qa~~R~~R~Gq 173 (288)
-++-|.....+.+..+++|.++-..|++++..+||-.. -.| +-+.-.||.||+||+|-
T Consensus 619 Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp 694 (1172)
T KOG0926|consen 619 QMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP 694 (1172)
T ss_pred hhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC
Confidence 34556666778888999999999999999999998643 233 34556788888888874
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=83.60 E-value=1.3 Score=43.88 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=54.9
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccc-------cceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT-------ADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~-------a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.|+.+..+.|+ ..+|...+..|. .. ... .++++.-+|=|+++.. ..+||.++++=++-++.|..+|+
T Consensus 427 ~~gi~~~~Lna~--q~~rEa~ii~~a-g~-~g~-VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRt 501 (745)
T TIGR00963 427 ERGIPHNVLNAK--NHEREAEIIAQA-GR-KGA-VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRS 501 (745)
T ss_pred HcCCCeEEeeCC--hHHHHHHHHHhc-CC-Cce-EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccc
Confidence 457888889998 668888888886 32 234 4556688888888777 67999999999999999999998
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG1513|consensus | Back alignment and domain information |
|---|
Probab=82.58 E-value=0.56 Score=46.14 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHhhcCCCCCeeEEEEeccccccccccccccee--------EEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 117 INDFNMEGSDIFIFMLSTRAGGLGINLATADVV--------VLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 117 i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v--------i~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
..+|.+++. .| -+-+.+++-|+.|+.-.+| |-+++||+...-.|-.||+||-.|-..
T Consensus 850 KqrFM~GeK--~v-AIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsa 914 (1300)
T KOG1513|consen 850 KQRFMDGEK--LV-AIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSA 914 (1300)
T ss_pred Hhhhccccc--ee-eeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCC
Confidence 457873332 33 4556899999999976666 457999999999999999999998764
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=82.14 E-value=35 Score=34.95 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=47.6
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
+.|+..+.++|+.++.+|...+.+|. +..+. +|+-+....-||+..-=..||.||.+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK--~~~~~-LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFK--NGVVN-LLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHh--ccCce-EEEehhhhhcccccccceEEEEcccc
Confidence 34888889999999999999999998 44344 55556778899999999999999987
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=81.81 E-value=16 Score=26.15 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=36.7
Q ss_pred CCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 74 ESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 74 ~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+||+. +...+..+.+.|...|+++..++=....+.|..+.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg 64 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN 64 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC
Confidence 479999974 567788999999999999988876555666666555443
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=81.80 E-value=4.1 Score=34.74 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=57.6
Q ss_pred EEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc-CCCCCeeEEEEecccccccccccccceeEEecCCC
Q psy10684 78 LIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN-MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW 156 (288)
Q Consensus 78 iIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~-~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w 156 (288)
...-.|.+..+.|...+.. ++..+.++++.+... -.|. ....+..++++--...+||++|.+-...++.-.+-
T Consensus 91 ~~~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~ 164 (239)
T PF10593_consen 91 PDPPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSK 164 (239)
T ss_pred CCCcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCc
Confidence 3445567777888888876 899999997765443 3333 12222477899999999999999988888877766
Q ss_pred Ccchhhh
Q psy10684 157 NPQMDLQ 163 (288)
Q Consensus 157 np~~~~Q 163 (288)
+..+..|
T Consensus 165 ~~DTL~Q 171 (239)
T PF10593_consen 165 QYDTLMQ 171 (239)
T ss_pred hHHHHHH
Confidence 6666666
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=81.20 E-value=2.3 Score=39.61 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=58.5
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+...-++|..++..|.....+|. .+. --| |+.+..++=|++...-+-|+=|||+=||...-+.++|.
T Consensus 352 ~~dlpv~eiHgk~~Q~kRT~~~~~F~-kae-sgI-L~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 352 YIDLPVLEIHGKQKQNKRTSTFFEFC-KAE-SGI-LVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred hcCCchhhhhcCCcccccchHHHHHh-hcc-cce-EEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 34567788999999999999999998 333 234 44558888999999999999999999999998888885
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.16 E-value=4 Score=41.06 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=51.6
Q ss_pred hhhcccCCCccccchhHHHhhccc-CCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhh-hhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNM-EGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDL-QAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~-~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~-Qa~~Ra 283 (288)
+...-+||.|+.-+|.+...--+. +..+++| |--.++-..|.+..+=+.||++||- |..++- ||++|.
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr-~smVDIVQaVGRV 569 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPR-SSMVDIVQAVGRV 569 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCc-hhHHHHHHHHHHH
Confidence 344557999999999666655532 3444554 4466899999999999999999998 665554 999996
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 288 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 2e-43 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 3e-18 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 2e-22 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 4e-15 | ||
| 1ofc_X | 304 | Nucleosome Recognition Module Of Iswi Atpase Length | 5e-17 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 6e-11 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 5e-06 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 6e-11 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 9e-06 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 5e-10 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 5e-06 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase Length = 304 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
|
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 312 bits (802), Expect = e-101
Identities = 97/214 (45%), Positives = 120/214 (56%), Gaps = 31/214 (14%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEP------GPPYTTDEH--- 52
+L K+ + K L NI+ +L+K SNHPYLFD AE G T E+
Sbjct: 490 ILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLR 549
Query: 53 -LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHE 111
L+ +SGKMV+LD+LL +LK RVLIFSQM RMLDIL DY +G + RLDG
Sbjct: 550 GLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSA 609
Query: 112 DRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR---- 167
R+ I+ FN S+ F+F+LSTRAGGLGINL TAD VV++DSDWNPQ DLQAM R
Sbjct: 610 QRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI 669
Query: 168 -----------------EAKILRRGSIKKALEAK 184
E ++L R K LE
Sbjct: 670 GQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 41/71 (57%), Positives = 49/71 (69%)
Query: 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWN 272
+ RLDG R+ I+ FN S+ F+F+LSTRAGGLGINL TAD VV++DSDWN
Sbjct: 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWN 655
Query: 273 PQMDLQAMVRT 283
PQ DLQAM R
Sbjct: 656 PQADLQAMARA 666
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 9e-94
Identities = 74/218 (33%), Positives = 104/218 (47%), Gaps = 35/218 (16%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYL-----------FDGAEPGPP--YT 48
L + V + + + + L+K NHP L FDGA P Y+
Sbjct: 330 FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS 389
Query: 49 TDEHLVFNSGKMVVLDKLLPKLKAQES-RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107
T SGKM+VLD +L + S +V++ S T+ LD+ E C R + Y RLDG
Sbjct: 390 TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 449
Query: 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 167
+ + R + + FN S FIFMLS++AGG G+NL A+ +V++D DWNP D QAM R
Sbjct: 450 MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 509
Query: 168 ---------------------EAKILRRGSIKKALEAK 184
E KIL+R + KKAL +
Sbjct: 510 VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSC 547
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 7e-40
Identities = 36/70 (51%), Positives = 47/70 (67%)
Query: 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWN 272
RYLY RLDG + + R + + FN S FIFMLS++AGG G+NL A+ +V++D DWN
Sbjct: 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWN 499
Query: 273 PQMDLQAMVR 282
P D QAM R
Sbjct: 500 PANDEQAMAR 509
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 4e-60
Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%)
Query: 3 LMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLF-DGAEPGPPYTTD--EHLVFNSGK 59
+++ + + + ++ + + + HPYL D P T D HL NSGK
Sbjct: 51 ILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGK 110
Query: 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQIND 119
VL L+ ++ E+ I + R +D+LE R DG +
Sbjct: 111 FSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFS 170
Query: 120 --FNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM-DLQAMVREAKILR 173
++ S+ F D+++ D+ + D+Q +++ + +
Sbjct: 171 CTVHLFSSEGINFTKYPIKSKAR-----FDMLICLDTTVDTSQKDIQYLLQYKRERK 222
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 7e-13
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 213 RYLYCRLDGQTAHEDRQRQIND--FNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270
+ R DG + ++ S+ F D+++ D+
Sbjct: 149 KVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKAR-----FDMLICLDTT 203
Query: 271 WNPQM-DLQAMVR 282
+ D+Q +++
Sbjct: 204 VDTSQKDIQYLLQ 216
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 4e-34
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 25 LMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMT 84
L++L++ +HP L G E SGKM+ +++ + + ++ IF+Q
Sbjct: 72 LLKLKQIVDHPALLKGGEQSVR---------RSGKMIRTMEIIEEALDEGDKIAIFTQFV 122
Query: 85 RMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 143
M I+ + + L G+ + ++R I+ F + +LS +AGG GINL
Sbjct: 123 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINL 181
Query: 144 ATADVVVLYDSDWNPQMDLQA 164
+A+ V+ +D WNP ++ QA
Sbjct: 182 TSANRVIHFDRWWNPAVEDQA 202
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 8e-15
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 205 KNYTEEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 264
+N E+E L G+ + ++R I+ F + +LS +AGG GINL +A+ V
Sbjct: 129 RNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRV 187
Query: 265 VLYDSDWNPQMDLQA 279
+ +D WNP ++ QA
Sbjct: 188 IHFDRWWNPAVEDQA 202
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-33
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 25 LMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMT 84
L++L++ +HP L G E SGKM+ +++ + + ++ IF+Q
Sbjct: 301 LLKLKQIVDHPALLKGGEQSVR---------RSGKMIRTMEIIEEALDEGDKIAIFTQFV 351
Query: 85 RMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 143
M I+ + + L G+ + ++R I+ F + +LS +AGG GINL
Sbjct: 352 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINL 410
Query: 144 ATADVVVLYDSDWNPQMDLQA 164
+A+ V+ +D WNP ++ QA
Sbjct: 411 TSANRVIHFDRWWNPAVEDQA 431
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 209 EEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 268
E+E L G+ + ++R I+ F + +LS +AGG GINL +A+ V+ +D
Sbjct: 362 EKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420
Query: 269 SDWNPQMDLQAMVRT 283
WNP ++ QA R
Sbjct: 421 RWWNPAVEDQATDRV 435
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 8e-23
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQR 115
++ L L ++Q +VL+ LE R G + + +R R
Sbjct: 488 DPRVEWLMGYLTSHRSQ--KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545
Query: 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 167
F E + +L + G G N A +V++D +NP + Q + R
Sbjct: 546 AAAWFAEEDTGAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 4e-13
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM 275
+ +R R F E + +L + G G N A +V++D +NP +
Sbjct: 531 AAVFHEGMSIIERDRAAAWFAEEDTGAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDL 589
Query: 276 DLQAMVR 282
Q + R
Sbjct: 590 LEQRIGR 596
|
| >1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Length = 304 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-15
Identities = 40/53 (75%), Positives = 43/53 (81%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEEEDRYLYCRLD 220
E KI RR SIKKAL+ KMSRYRAPFHQLR+ YG NKGKNYTE EDR+L C L
Sbjct: 176 EGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLH 228
|
| >2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Length = 374 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 3e-12
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAY--GANKGKNYTEEEDRYLYCRLD 220
E KI R ++AL K+S Y+ PF L++ + +N + Y+EEEDR++ L
Sbjct: 190 EEKIKRVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLF 244
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-07
Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 59 KMVVLDKLLPKL--KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA------- 109
KM L +++ + + Q S++++F+ + + G K R GQ +
Sbjct: 344 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 403
Query: 110 -HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRE 168
+++ +++F ++ + +T G G+++ D+VV Y+ + +Q R
Sbjct: 404 SQREQKLILDEFARGEFNVLV---ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 460
Query: 169 A 169
Sbjct: 461 G 461
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 1e-04
Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 48/204 (23%)
Query: 19 MRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVL 78
LQ +L Q+ N D + ++A+ R+L
Sbjct: 200 EMLQKLLYQIDP--NWTSRSDHSSN-IKLRIHS------------------IQAELRRLL 238
Query: 79 IFSQMTRMLDILEDYCY---WRGFKY-CRL----------DGQTAHEDRQRQINDFNM-- 122
L +L + W F C++ D +A ++ +M
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 123 ---EGSDIFIFMLSTRAGGL-----GINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174
E + + L R L N ++ D D V K+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT- 357
Query: 175 GSIKKALEA-KMSRYRAPFHQLRI 197
I+ +L + + YR F +L +
Sbjct: 358 -IIESSLNVLEPAEYRKMFDRLSV 380
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 64 DKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDF 120
LL L+ VLIF++ +D + +Y +G + + G E+R + I F
Sbjct: 44 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 100
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.97 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.96 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.95 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.94 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.86 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.85 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.85 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.84 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.83 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.81 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.81 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.8 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.68 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.77 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.76 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.72 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.72 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.7 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.69 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.68 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.68 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.68 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.67 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.66 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.66 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.65 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.65 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.62 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.62 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.62 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.62 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.61 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.58 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.58 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.57 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.56 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.56 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.56 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.54 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.54 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.52 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.51 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.47 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.46 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.45 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.45 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.43 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.42 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.4 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.39 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.39 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.38 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.29 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.28 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.27 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.26 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.24 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.21 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.19 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.19 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.18 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.18 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.17 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.16 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.14 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.14 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.13 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.12 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.07 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.07 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.06 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.01 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.97 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.91 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 98.77 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 98.74 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 98.74 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 98.71 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 98.68 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 98.67 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 98.65 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 98.63 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 98.59 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.01 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 98.54 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.54 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 98.53 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 98.51 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 98.5 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 98.44 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 98.43 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 98.4 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 98.4 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 98.38 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 98.31 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 98.3 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 98.27 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 98.25 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 98.25 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 98.21 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 98.21 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 98.1 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 98.08 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 98.07 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.06 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 98.05 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 98.05 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 97.99 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 97.79 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 97.74 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 97.64 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 97.62 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 97.16 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 97.15 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 97.08 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 97.01 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 97.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 96.89 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 96.69 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 96.51 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 96.39 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 96.21 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 96.2 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 96.18 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 96.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 95.97 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 95.93 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 95.29 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 94.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 94.19 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 94.14 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 92.98 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 92.4 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 89.99 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 89.13 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 87.51 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 86.68 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 84.67 | |
| 2l82_A | 162 | Designed protein OR32; structural genomics, northe | 83.73 |
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=257.02 Aligned_cols=169 Identities=28% Similarity=0.432 Sum_probs=135.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh
Q psy10684 17 EKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW 96 (288)
Q Consensus 17 ~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~ 96 (288)
....+++.+++|||+|+||.++.... .....|+|+..|.++|..+...++|+||||+++.+++.|+..|..
T Consensus 64 ~~~~~l~~l~~Lrq~~~hP~l~~~~~---------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~ 134 (271)
T 1z5z_A 64 RKGMILSTLLKLKQIVDHPALLKGGE---------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK 134 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHCSC---------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHhcCCc---------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHH
Confidence 45679999999999999999987321 234579999999999999888899999999999999999999998
Q ss_pred c-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 97 R-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 97 ~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
. |+++..+||+++.++|+++++.|+ ..+.+.|+|++|++|++|+||+.|++||+||+||||..+.||+||+||+||++
T Consensus 135 ~~g~~~~~l~G~~~~~~R~~~i~~F~-~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~ 213 (271)
T 1z5z_A 135 ELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTR 213 (271)
T ss_dssp HHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------
T ss_pred hcCCcEEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCC
Confidence 5 999999999999999999999999 44467789999999999999999999999999999999999999999999999
Q ss_pred ch-------HHHHHHHhhhhccccchh
Q psy10684 176 SI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 176 ~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
+| +.++++++.++...+..+
T Consensus 214 ~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 214 NVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred ceEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 86 467777776666555444
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-33 Score=272.15 Aligned_cols=188 Identities=48% Similarity=0.758 Sum_probs=151.1
Q ss_pred cccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCC----------CCCCCCccccccCchHHHHHHHHHHHHh
Q psy10684 3 LMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPG----------PPYTTDEHLVFNSGKMVVLDKLLPKLKA 72 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~----------~~~~~~~~~~~~s~K~~~l~~ll~~~~~ 72 (288)
+.+++..+..+.+....++++.+++||++|+||+++...... .........+..|+|+..|.++|..+..
T Consensus 491 ~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~ 570 (800)
T 3mwy_W 491 LTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK 570 (800)
T ss_dssp HHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh
Confidence 344455566666667778999999999999999998653211 0000112235579999999999999988
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 152 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~ 152 (288)
.++|+||||+++.+++.|+..|...|+++++++|+++.++|++++++|+.++.+..++|+||++|++||||+.|++||+|
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~ 650 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIF 650 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEES
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEe
Confidence 99999999999999999999999999999999999999999999999997666777899999999999999999999999
Q ss_pred cCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhcc
Q psy10684 153 DSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRA 190 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~ 190 (288)
|+||||..+.||+||+||+||+++| +.++++++.+.+.
T Consensus 651 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~ 695 (800)
T 3mwy_W 651 DSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERAR 695 (800)
T ss_dssp SCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999876 3566666554433
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-30 Score=246.35 Aligned_cols=179 Identities=35% Similarity=0.524 Sum_probs=147.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCC-----CC--------CCCCCCCccccccCchHHHHHHHHHHHHh-CCCeEEEEec
Q psy10684 17 EKMRLQNILMQLRKCSNHPYLFDGA-----EP--------GPPYTTDEHLVFNSGKMVVLDKLLPKLKA-QESRVLIFSQ 82 (288)
Q Consensus 17 ~~~~~~~~l~~Lrq~~~hP~l~~~~-----~~--------~~~~~~~~~~~~~s~K~~~l~~ll~~~~~-~~~kviIFs~ 82 (288)
...+++..+++|||+|+||.++... +. .............|+|+..+..++..+.. .++|+||||+
T Consensus 345 ~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~ 424 (644)
T 1z3i_X 345 ISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSN 424 (644)
T ss_dssp CCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred cchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 4567899999999999999987321 00 00111112223468999999999988754 5799999999
Q ss_pred chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhh
Q psy10684 83 MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDL 162 (288)
Q Consensus 83 ~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~ 162 (288)
++.+++.|+..|...|++++.+||+++.++|++++++|+++.....++|+++++|++||||+.|++||+||+||||..+.
T Consensus 425 ~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~ 504 (644)
T 1z3i_X 425 YTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDE 504 (644)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHH
Confidence 99999999999999999999999999999999999999965555568999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 163 QAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 163 Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
||+||+||+||+++| +.++++++.+.+..+..+
T Consensus 505 Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 505 QAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp HHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999876 467777776665544443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=227.30 Aligned_cols=170 Identities=28% Similarity=0.425 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh
Q psy10684 16 LEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY 95 (288)
Q Consensus 16 ~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~ 95 (288)
..+..++..+++|||+|+||.++.... .....|+|+..+.+++.+....++|+||||++..+++.+...|.
T Consensus 292 ~~~~~~~~~l~~lr~~~~~p~l~~~~~---------~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~ 362 (500)
T 1z63_A 292 KRKGMILSTLLKLKQIVDHPALLKGGE---------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIE 362 (500)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSC---------CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCHHHhcCcc---------chhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHH
Confidence 455679999999999999999886432 23456899999999999988889999999999999999999998
Q ss_pred hc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 96 WR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 96 ~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.. |+++..+||+++.++|++++++|+ ..+.++++|++++++++|+|++.+++||++|+||||..+.||+||+||+||+
T Consensus 363 ~~~~~~~~~~~g~~~~~~R~~~~~~F~-~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 363 KELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441 (500)
T ss_dssp HHHTCCCCEEETTSCHHHHHHHHHHHH-HCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTT
T ss_pred HhhCCCeEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCC
Confidence 86 999999999999999999999999 4445677899999999999999999999999999999999999999999999
Q ss_pred cch-------HHHHHHHhhhhccccchh
Q psy10684 175 GSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 175 ~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
++| +.++++++.+.+..+..+
T Consensus 442 ~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 442 RNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp SCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred CeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 886 467777776665554443
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=207.01 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCC-CCCCC--CCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH
Q psy10684 18 KMRLQNILMQLRKCSNHPYLFDGA-EPGPP--YTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 18 ~~~~~~~l~~Lrq~~~hP~l~~~~-~~~~~--~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l 94 (288)
..++.+++++||+|||||+|+... .+... ....++.+..|+|+..|.++|..+.+.++||+||||++.++|+++.+|
T Consensus 66 ~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l 145 (328)
T 3hgt_A 66 LESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALL 145 (328)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhhccccCCccccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHH
Confidence 457899999999999999998432 22111 122445677999999999999999999999999999999999999999
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccc-----ccccceeEEecCCCCcchh-hhhhHHH
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN-----LATADVVVLYDSDWNPQMD-LQAMVRE 168 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gln-----l~~a~~vi~~d~~wnp~~~-~Qa~~R~ 168 (288)
..+++++++++|+...+ +++. ....+.++|+ +.+|+.|+| ++.|+.||.||++|||... .||+.|+
T Consensus 146 ~~~~~~y~RlDG~~~~~-~~k~------~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 146 LGNKVHIKRYDGHSIKS-AAAA------NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp TTSSCEEEESSSCCC--------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred hcCCCceEeCCCCchhh-hhhc------ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 99999999999996543 2221 2345677776 567887775 8999999999999999998 8999999
Q ss_pred HHH--hhhcch-------HHHHHHHhhhh
Q psy10684 169 AKI--LRRGSI-------KKALEAKMSRY 188 (288)
Q Consensus 169 ~R~--Gq~~~v-------~~~i~~~~~~~ 188 (288)
||+ ||+++| ..+||+.+..+
T Consensus 218 ~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 218 KRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp C---------CCEEEEEETTSHHHHHHHH
T ss_pred hhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 999 677765 46777766555
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=157.59 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=107.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+..|.++++.. .+.++||||++...++.+...|...|+++..+||++++.+|..+++.|++ +.+.| |++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~v-LvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--FQRRI-LVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC--CCCcE-EEECC
Confidence 567999999998863 56799999999999999999999999999999999999999999999984 44455 78999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+|||+..|.|++||++|.|+.+.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~ 131 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 131 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE
Confidence 999999999999999999999999999999999999998764
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=155.90 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=108.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+.|+..|.+++.. ..+.++||||++...++.+...|...|+++..+||++++.+|..+++.|++ +.+.| |++|
T Consensus 18 ~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~v-lv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR--GEYRY-LVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEEC
T ss_pred ChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEC
Confidence 357899999999886 456799999999999999999999999999999999999999999999984 34455 7899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+||++..+.|++||++|.|+.+.+
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~ 135 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA 135 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE
Confidence 9999999999999999999999999999999999999998865
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=160.85 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=104.6
Q ss_pred hcCCCCCCCCCCCCCCCCCCccc---cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC
Q psy10684 31 CSNHPYLFDGAEPGPPYTTDEHL---VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107 (288)
Q Consensus 31 ~~~hP~l~~~~~~~~~~~~~~~~---~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~ 107 (288)
..+.|..+.............+. ...+.|+..|.+++.. .+.++||||++...++.+...|...|+++..+||+
T Consensus 11 ~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 11 VDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -----------------CCSEEEEEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34456555443332222233332 2356788888877753 45799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 108 ~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|.++++.|++ +.+.| |++|+++++|+|++.+++||+||+||++..|.|++||++|.|+++.+
T Consensus 88 ~~~~~R~~~l~~F~~--g~~~v-LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~ 154 (191)
T 2p6n_A 88 KDQEERTKAIEAFRE--GKKDV-LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA 154 (191)
T ss_dssp SCHHHHHHHHHHHHH--TSCSE-EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE
T ss_pred CCHHHHHHHHHHHhc--CCCEE-EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE
Confidence 999999999999984 34444 78999999999999999999999999999999999999999998764
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-21 Score=159.25 Aligned_cols=119 Identities=21% Similarity=0.361 Sum_probs=94.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+.|+..|.++++.. ..+.|+||||++...++.+...|...|+++..+||+++..+|.++++.|++ +.+.| |++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~--g~~~v-LvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPI-LVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH--TSSSE-EEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEc
Confidence 4678999999999873 256899999999999999999999999999999999999999999999984 34444 7899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.++.||+||+||++..+.|++||++|.|+++.+
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~ 146 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 146 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE
Confidence 9999999999999999999999999999999999999988765
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=150.87 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|+..|.++++.. .+.++||||++...++.+...|...++.+..+||+++..+|.++++.|++ +.+.| |++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v-lv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSRI-LISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc--CCCEE-EEEcChh
Confidence 3999999998863 56799999999999999999999999999999999999999999999984 44455 7899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 130 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 130 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999998865
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-20 Score=172.89 Aligned_cols=134 Identities=16% Similarity=0.287 Sum_probs=113.0
Q ss_pred ccCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeC--------CCCHHHHHHHHHhhcCCC
Q psy10684 55 FNSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDG--------QTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G--------~~~~~~R~~~i~~F~~~~ 124 (288)
..++|+..+.++|.... ..+.|+||||++...++.+...|...|+++..+|| +++.++|+++++.|+++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~- 418 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG- 418 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC-
Confidence 46889999999999865 46889999999999999999999999999999999 99999999999999843
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-----HHHHHHHhhhhcccc
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-----KKALEAKMSRYRAPF 192 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-----~~~i~~~~~~~~~~~ 192 (288)
.+.| |++|+++++|+|++.+++||++|+||||..+.|++||+||.|+ +.+ +.++++++...+..+
T Consensus 419 -~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~~~~~~~k 488 (494)
T 1wp9_A 419 -EFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYYWSSRQK 488 (494)
T ss_dssp -SCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHHHHHCC--
T ss_pred -CceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHHHHHHHHH
Confidence 3455 8899999999999999999999999999999999999999999 543 455666655554433
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=152.31 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=106.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+.|+..|.++++. ..+.++||||++...++.+...|...|+.+..+||++++++|.++++.|++ +..+| |++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~v-lvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ--GEVRV-LVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS--SSCCE-EEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC--CCCeE-EEec
Confidence 357899999999975 457799999999999999999999999999999999999999999999984 34455 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||++|+||++..|.|++||++|.|+.+.+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 131 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRV 131 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeE
Confidence 9999999999999999999999999999999999999988764
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-20 Score=147.41 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|+..|.++++.. .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|++ +.+.| |++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~--g~~~v-LvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD--GKEKV-LITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT--TSCSE-EEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEecch
Confidence 3888888887653 46799999999999999999999999999999999999999999999984 34454 8899999
Q ss_pred cccccccccceeEEecCC------CCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSD------WNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~------wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||+||+| +++..+.|++||++|.|+.+.+
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~ 140 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE
Confidence 999999999999999999 6668899999999999988764
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-21 Score=155.26 Aligned_cols=120 Identities=19% Similarity=0.350 Sum_probs=107.4
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
+.|+..|.++++. ..+.++||||++...++.+...|...|+.+..+||+++..+|.++++.|++ +.+.| |++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~v-LvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE--GRVNV-LVATDV 89 (170)
Confidence 5688888888875 346799999999999999999999999999999999999999999999983 34444 889999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
+++|+|++.+++||++|+||++..+.|++||++|.|+.+.+-..+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999998775333
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=179.07 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=110.3
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh-cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW-RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~-~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
....++|+..+.++++. ..+.|+||||++...++.+...|.. .|+++..+||+++..+|.++++.|+++.+.+.| |
T Consensus 484 ~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-L 560 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-L 560 (968)
T ss_dssp TTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-E
T ss_pred ccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-E
Confidence 44568899999999986 5678999999999999999999995 599999999999999999999999954434666 6
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+++++|+|++.+++||+||+||||..+.|++||+||.||++.+
T Consensus 561 vaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v 606 (968)
T 3dmq_A 561 LCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606 (968)
T ss_dssp ECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCC
T ss_pred EecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceE
Confidence 7889999999999999999999999999999999999999999854
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=150.68 Aligned_cols=117 Identities=19% Similarity=0.321 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+.+|.++++.. .+.++||||+....++.+...|...|+.+..+||++++.+|..+++.|+. +..+| |++|+
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~--g~~~v-LVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ--GEVRV-LVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH--TSCCE-EEECS
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc--CCceE-EEEec
Confidence 467999999999763 47899999999999999999999999999999999999999999999984 34445 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+||++..|.|++||++|.|+.+.+
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~ 128 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRV 128 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEE
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceE
Confidence 999999999999999999999999999999999999988754
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-18 Score=160.64 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=61.4
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc------------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR------------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~------------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|.... ..+.|+||||++..+++.|...|... |..+..+||+++.++|.++++.|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4889999999998754 55789999999999999999999876 556667778899999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+ ++.++| |++|+++++|+|++.+++||+||+||||..|.||+|| +|.
T Consensus 450 ~-~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 450 T-SKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 496 (556)
T ss_dssp -----CCE-EEEEC-----------CEEEEETCCSCHHHHHHC-------
T ss_pred c-cCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 3 245555 8999999999999999999999999999999999999 777
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-18 Score=154.38 Aligned_cols=116 Identities=17% Similarity=0.316 Sum_probs=104.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...|.+++.. .+.++||||++...++.+...|...|+++..+||++++++|.++++.|+++ ...| |++|+
T Consensus 285 ~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~v-LvaT~ 358 (434)
T 2db3_A 285 KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--SMKV-LIATS 358 (434)
T ss_dssp GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS--SCSE-EEECG
T ss_pred cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC--CCcE-EEEch
Confidence 45677777777764 345699999999999999999999999999999999999999999999843 4444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a 400 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA 400 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE
Confidence 999999999999999999999999999999999999998765
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-18 Score=148.65 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=77.2
Q ss_pred HHhhhhccccchhhhhhccCCCcccccc---c-chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc
Q psy10684 183 AKMSRYRAPFHQLRIAYGANKGKNYTEE---E-DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 258 (288)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~-~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl 258 (288)
+.+.+.....++++++.+.....+..++ . .|+.+..++|+++.++|++++++|+ +++++.|+|+|+++||.||||
T Consensus 103 ~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~-~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 103 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEEECCTTCCCCCC
T ss_pred HHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEehhhhcCCcCc
Confidence 3344444456777888777665554443 2 3788999999999999999999999 676788999999999999999
Q ss_pred cccceEEEeCCCCChhhhhhhhhhh
Q psy10684 259 ATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 259 ~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++|++||++||||||..+.||++|+
T Consensus 182 ~~a~~VI~~d~~wnp~~~~Q~~gR~ 206 (271)
T 1z5z_A 182 TSANRVIHFDRWWNPAVEDQATDRV 206 (271)
T ss_dssp TTCSEEEECSCCSCTTTC-------
T ss_pred ccCCEEEEECCCCChhHHHHHHHhc
Confidence 9999999999999999999999998
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-17 Score=157.69 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=77.8
Q ss_pred cCchHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcC------------cEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRG------------FKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~------------~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|..... .+.|+||||++..+++.|...|...+ ..+..+||+++.++|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 48899999999987643 35899999999999999999998764 35555667999999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+ ++.+.| |++|+++++|+|++.+++||+||+||||..|.||+|| +|.
T Consensus 449 ~-~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 449 A-SGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA 495 (555)
T ss_dssp ----CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT
T ss_pred c-CCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC
Confidence 3 255565 7899999999999999999999999999999999999 665
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-17 Score=146.29 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=106.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.++++.. .+.++||||++...++.+...|...|+++..+||+++.++|.++++.|+++ ...| |++|+
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~v-lv~T~ 308 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRRI-LVATN 308 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--CCSE-EEESC
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CCcE-EEECC
Confidence 567888888888763 568999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 350 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 350 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999999999999999988765
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=147.02 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+.+++... ...++||||++...++.+...|...|+.+..+||+++.++|.++++.|+++ ..+| |++|+++
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~v-lv~T~~~ 336 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG--ASRV-LISTDVW 336 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT--SSCE-EEECGGG
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC--CCCE-EEECChh
Confidence 3888888888763 356999999999999999999999999999999999999999999999843 3444 8899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 376 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA 376 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEE
Confidence 9999999999999999999999999999999999998865
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-17 Score=161.15 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc------------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR------------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~------------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|.... ..+.|+||||+++.+++.|...|... |..+..+||+++.++|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 5889999999998743 45689999999999999999999773 567777889999999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+ ++.+.| |++|+++++|+|++.+++||+||+||||..+.||+|| +|. +.+.
T Consensus 691 ~-~g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~ 741 (797)
T 4a2q_A 691 T-SKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (797)
T ss_dssp ----CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCC
T ss_pred c-cCCceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 3 245555 8999999999999999999999999999999999999 777 4443
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-17 Score=161.99 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc------------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR------------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~------------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|.... ..+.|+||||+++.+++.|...|... |..+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4889999999998754 44689999999999999999999986 666777788899999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
. ++.+.| |++|+++++|||++.+++||+||+||||..+.||+|| +|.
T Consensus 691 ~-~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 691 T-SKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp ----CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-------
T ss_pred c-cCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 3 245555 8999999999999999999999999999999999999 777
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=144.53 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..+.++++.. .+.++|||++....++.+...|...++.+..+||+++.++|.++++.|++ +..+| |++|++
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~v-lv~T~~ 339 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS--GSSRV-LITTDL 339 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC--C---C-EEECSS
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc--CCCcE-EEECCc
Confidence 44777777777652 45799999999999999999999999999999999999999999999984 34444 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+|++.+++||++++||++..+.|++||++|.|+.+.+
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 380 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 380 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CE
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceE
Confidence 99999999999999999999999999999999999998765
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=144.01 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=105.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|...+..++.. ..+.++||||++...++.+...|...|+.+..+||+++.++|.++++.|++ +..+| |++|+
T Consensus 242 ~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v-Lv~T~ 316 (400)
T 1s2m_A 242 ERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ--GKVRT-LVCSD 316 (400)
T ss_dssp GGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT--TSSSE-EEESS
T ss_pred hhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc--CCCcE-EEEcC
Confidence 56788888888775 356799999999999999999999999999999999999999999999984 34444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 358 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 358 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEE
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceE
Confidence 999999999999999999999999999999999999998865
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=144.97 Aligned_cols=118 Identities=21% Similarity=0.372 Sum_probs=104.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.++++.. ..+.++||||+....++.+...|...|+.+..+||+++.++|.++++.|+++ ...| |++|+
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~v-lvaT~ 334 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG--KSPI-LVATA 334 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT--SSCE-EEECH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC--CCCE-EEECC
Confidence 467888888887753 3467999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 376 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 376 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEE
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceE
Confidence 999999999999999999999999999999999999998765
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=142.05 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=103.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..+.++++ ..+.++||||++...++.+...|...++.+..+||+++.++|.++++.|+++ ...| |++|+
T Consensus 223 ~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~v-lv~T~ 296 (367)
T 1hv8_A 223 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK--KIRI-LIATD 296 (367)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT--SSSE-EEECT
T ss_pred hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC--CCeE-EEECC
Confidence 4567766666654 5678999999999999999999999999999999999999999999999843 4444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+
T Consensus 297 ~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 338 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA 338 (367)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE
T ss_pred hhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE
Confidence 999999999999999999999999999999999999988765
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.5e-16 Score=138.02 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+..++.. ..+.++|||++....++.+...|...++.+..+||+++.++|.++++.|+++ ..+| |++|+++
T Consensus 229 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~v-lv~T~~~ 303 (395)
T 3pey_A 229 DKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG--RSKV-LITTNVL 303 (395)
T ss_dssp HHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCCE-EEECGGG
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC--CCCE-EEECChh
Confidence 455555555543 2457999999999999999999999999999999999999999999999843 4444 8999999
Q ss_pred cccccccccceeEEecCCC------CcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDW------NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~w------np~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+|| ++..+.|++||++|.|+.+.+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~ 349 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA 349 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE
Confidence 9999999999999999999 999999999999999988764
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-17 Score=150.64 Aligned_cols=112 Identities=15% Similarity=0.272 Sum_probs=99.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+..+.++++. ..+.|+||||++...++.+...|. +..+||+++..+|+++++.|++ +.++| |++|+
T Consensus 333 ~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~--g~~~v-Lv~T~ 402 (472)
T 2fwr_A 333 SKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT--GRFRA-IVSSQ 402 (472)
T ss_dssp CSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH--SSCSB-CBCSS
T ss_pred ChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC--CCCCE-EEEcC
Confidence 56788999998877 457899999999999999999884 4568999999999999999984 44455 78999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh-cch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR-GSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~-~~v 177 (288)
++++|+|++.++.||++|+||||..+.|++||++|.|+. +.+
T Consensus 403 ~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 403 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred chhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceE
Confidence 999999999999999999999999999999999999986 443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=154.93 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=94.5
Q ss_pred cCchHHHHHHHHHHHHh--C-CCeEEEEecchHHHHHHHHHHhhc------CcEEEEeeCC--------CCHHHHHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKA--Q-ESRVLIFSQMTRMLDILEDYCYWR------GFKYCRLDGQ--------TAHEDRQRQIN 118 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~-~~kviIFs~~~~~~~~l~~~l~~~------~~~~~~~~G~--------~~~~~R~~~i~ 118 (288)
.++|+..|.++|..... . +.++||||++...++.|...|... |+++..+||+ ++.++|.++++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 46788888888876433 2 689999999999999999999987 8999999999 99999999999
Q ss_pred hhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 119 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 119 ~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
.|++ +.+.| |++|+++++|+|++.++.||+||+||||..+.|++||++|-|
T Consensus 459 ~F~~--g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 459 KFRT--GKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHCC-----CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HHhc--CCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9984 44444 789999999999999999999999999999999999976555
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-17 Score=159.34 Aligned_cols=103 Identities=44% Similarity=0.669 Sum_probs=89.5
Q ss_pred HHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCC
Q psy10684 181 LEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN 257 (288)
Q Consensus 181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~gln 257 (288)
+.+.+.+.....++++++++.....+..++ ..|+.+++++|+++..+|++++++|+..++..+++|+|+++||+|||
T Consensus 561 L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 561 LDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp HHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred HHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 444455666777888898888776666654 45899999999999999999999999446667799999999999999
Q ss_pred ccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 258 LATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 258 l~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++|++||++||+|||..+.||++||
T Consensus 641 L~~a~~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 641 LMTADTVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp CTTCCEEEESSCCSCSHHHHHHHTTT
T ss_pred ccccceEEEecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=137.23 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=101.2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+.+++.. ..+.++||||+....++.+...|...++.+..+||+++.++|.++++.|+++ ..+| |++|+++
T Consensus 252 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~v-lv~T~~~ 326 (412)
T 3fht_A 252 EKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEKV-LVTTNVC 326 (412)
T ss_dssp HHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCSE-EEECGGG
T ss_pred HHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC--CCcE-EEEcCcc
Confidence 466666666654 3467999999999999999999999999999999999999999999999843 4444 8999999
Q ss_pred cccccccccceeEEecCCCCc------chhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNP------QMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp------~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+||++ ..+.|++||++|.|+.+.+
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~ 372 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 372 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE
Confidence 999999999999999999876 5899999999999988764
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=147.47 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=69.8
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcC----cEEEEee--------CCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRG----FKYCRLD--------GQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~----~~~~~~~--------G~~~~~~R~~~i~~F~ 121 (288)
.+.|+..|.+++.... ..+.++||||++...++.|...|...+ +++..++ |+++.++|.++++.|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 5789999999998753 246799999999999999999999988 8888885 4999999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
. ++.++| |++|+++++|+|++.+++||+||+|||+..+.|++|| +|.
T Consensus 458 ~-~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 458 A-SGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp ----CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC----------
T ss_pred h-cCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC
Confidence 3 244555 8999999999999999999999999999999999999 997
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=139.90 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=104.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.+++.. ..+.++||||++...++.+...|...|+.+..+||+++.++|.++++.|.++ ...| |++|.
T Consensus 220 ~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~v-lVaT~ 294 (523)
T 1oyw_A 220 KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD--DLQI-VVATV 294 (523)
T ss_dssp CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCSE-EEECT
T ss_pred CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC--CCeE-EEEec
Confidence 45677777777765 3567999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.++|+|++.++.||++++|+++..|.|++||++|.|+.+.+
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~ 336 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceE
Confidence 999999999999999999999999999999999999987754
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-15 Score=140.73 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=94.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..+.++||||+....++.+...|... ++.+..+||++++++|.++++.|+. +...| |++|+++++|+|++.+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~v-LVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGI-LVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEE-EEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeE-EEEcchhhcCCCcccCCE
Confidence 34679999999999999999999887 9999999999999999999999983 44454 889999999999999999
Q ss_pred eEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 149 VVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 149 vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
||++++|+++..|.|++||++|.|+.+.+
T Consensus 363 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 391 (579)
T 3sqw_A 363 VLQIGVPSELANYIHRIGRTARSGKEGSS 391 (579)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEE
T ss_pred EEEcCCCCCHHHhhhhccccccCCCCceE
Confidence 99999999999999999999999988754
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-16 Score=142.34 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
|...+.++++.. .+.++||||++...++.+...|...++.+..+||+++.++|.++++.|++ +..+| |++|++++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~v-lv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSRI-LISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC--CCCcE-EEECChhh
Confidence 666666666542 35699999999999999999999999999999999999999999999983 34444 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHH
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
+|+|++.+++||++++||++..+.|++||++|.|+.+.+-..+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 9999999999999999999999999999999999998775433
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-16 Score=149.27 Aligned_cols=92 Identities=40% Similarity=0.688 Sum_probs=78.4
Q ss_pred cchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC
Q psy10684 192 FHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 268 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d 268 (288)
.++++++.+.....+..++ ..|+.+.+++|+++.++|++++++|+..+...+++|+|+++||+||||++|++||++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 4566777666655555543 4588999999999999999999999933334568999999999999999999999999
Q ss_pred CCCChhhhhhhhhhh
Q psy10684 269 SDWNPQMDLQAMVRT 283 (288)
Q Consensus 269 ~~wnp~~~~Qa~~Ra 283 (288)
|||||+.+.||++||
T Consensus 496 ~~wnp~~~~Qa~gR~ 510 (644)
T 1z3i_X 496 PDWNPANDEQAMARV 510 (644)
T ss_dssp CCSSHHHHHHHHTTS
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999999999
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=138.78 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=94.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..+.++||||+....++.+...|... ++++..+||++++++|.++++.|++ +.+.| |++|+++++|+|++.+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~v-LvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGI-LVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEE-EEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCE-EEEcchhhcCCCcccCCE
Confidence 34679999999999999999999887 9999999999999999999999983 44454 899999999999999999
Q ss_pred eEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 149 VVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 149 vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
||++|+|+++..|.|++||++|.|+.+.+
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 442 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTARSGKEGSS 442 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEE
T ss_pred EEEECCCCchhhhhhhcCccccCCCCceE
Confidence 99999999999999999999999988753
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=137.78 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 59 KMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 59 K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
+...+..+++.+.. .+.++||||++...++.+...|...|+.+..+||+++.++|.++++.|.. +.+.| |++|.+
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~V-lVAT~a 326 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA--NEIQV-VVATVA 326 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSSSE-EEECTT
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc--CCCeE-EEEech
Confidence 33344444443332 46899999999999999999999999999999999999999999999984 34444 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++|+|++.++.||++++|+++..|.|++||++|.|+.+..
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~ 367 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADC 367 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceE
Confidence 99999999999999999999999999999999999987653
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-15 Score=130.95 Aligned_cols=99 Identities=16% Similarity=0.330 Sum_probs=89.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.++|||+++.+.++.+...|. .+..+||+++.++|.++++.|++ +..+| |++|+++++|+|++.+++||+
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~--~~~~v-lv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE--GEYDM-LITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEECHHHHTTCCCCCBSEEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc--CCCcE-EEEcCccccCCCccCCCEEEE
Confidence 456899999999999999988886 56789999999999999999984 34444 889999999999999999999
Q ss_pred ecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++||++..+.|++||++|.|+.+.+
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~ 316 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEA 316 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEE
T ss_pred ecCCCCHHHhhHhcCccccCCCCceE
Confidence 99999999999999999999998875
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=132.46 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec-c
Q psy10684 58 GKMVVLDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST-R 135 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~-~ 135 (288)
.|...+.+++...... +.++|||++ ...++.+...|...+.++..+||+++.++|+++++.|++ +...| |++| +
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~--g~~~v-Lv~T~~ 406 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN--GKGII-IVASYG 406 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH--CCSCE-EEEEHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC--CCCCE-EEEEcC
Confidence 4555666777665444 456777777 888888999999988899999999999999999999983 44555 5666 9
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++++|+|++.+++||+++++|++..+.|++||+||.|+.+
T Consensus 407 ~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 407 VFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp HHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred hhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 9999999999999999999999999999999999999876
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=138.82 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||.+....+.|...|...|+++..+||.++..+|..+...|+ .. . ++++|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~--~g--~-VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--KG--A-VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS--TT--C-EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC--CC--e-EEEeCC
Confidence 456888888888876667789999999999999999999999999999999987777765555554 22 2 389999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. +..+||++|.|-++..|.|++||++|.|..|..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 788999999999999999999999999999874
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=134.21 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=89.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE--------EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK--------YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~--------~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
.+.|+||||++...++.+...|...+.. +..+||.++ ++|++++++|++++.+..++|++++++++|+|++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 3579999999999999999999876543 678999986 3699999999966566778899999999999999
Q ss_pred ccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 145 TADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 145 ~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+++||+++++|++..+.|++||++|.|+
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999986
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-15 Score=137.79 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|...+..++... ...++||||+....++.+...|...++.+..+||+++..+|..+++.|++ +...| |++|++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~--g~~~i-Lv~T~~ 392 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--GKEKV-LVTTNV 392 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc--CCCcE-EEEccc
Confidence 34555565555532 35699999999999999999999999999999999999999999999984 34444 899999
Q ss_pred ccccccccccceeEEecCCCCc------chhhhhhHHHHHHhhhcchHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNP------QMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp------~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
+++|+|++.+++||+||+||++ ..|.|++||++|.|+.+.+-..+
T Consensus 393 ~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 393 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ---------------------------------------------------
T ss_pred cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999876 68999999999999988765444
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-14 Score=132.31 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=100.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||++....+.|...|...|+++..+||+....+|.-+...|+ ... ++++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ--KGM---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS--TTC---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC--CCe---EEEEcc
Confidence 456889999998887677889999999999999999999999999999999965555554455564 232 499999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. +..+||++|.|-++..|.|++||++|.|+.|..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999998 677999999999999999999999999999874
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=126.16 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=93.9
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
+....|...+.++++. .+.++||||+....++.+...|...|+++. .+||. +|. ++.|++ +.++| |+
T Consensus 235 ~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~--g~~~v-Lv 302 (414)
T 3oiy_A 235 RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV--GKINI-LI 302 (414)
T ss_dssp EESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT--TSCSE-EE
T ss_pred eeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC--CCCeE-EE
Confidence 3355788888888876 347999999999999999999999999998 89984 444 999983 45566 55
Q ss_pred e----cccccccccccc-cceeEEecCC--CCcchhhhhhHHHHHHhh
Q psy10684 133 S----TRAGGLGINLAT-ADVVVLYDSD--WNPQMDLQAMVREAKILR 173 (288)
Q Consensus 133 s----~~~~~~Glnl~~-a~~vi~~d~~--wnp~~~~Qa~~R~~R~Gq 173 (288)
+ |+++++|+|++. +++||+||+| +++..|.|++||++|.|+
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 5 999999999999 9999999999 999999999999999985
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=131.11 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=103.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||.+....+.|...|...|+++..+||.....+|..+..+|+. +. ++++|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 4568889999888777778899999999999999999999999999999999877777777778872 22 489999
Q ss_pred ccccccccccc-------------------------------------ceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATA-------------------------------------DVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a-------------------------------------~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+... .|||++|.|-++..|.|++||++|.|..|..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999863 6999999999999999999999999999874
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=128.51 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..+...+...|......+.++||||+....++.|...|...|+++..+||++++.+|.++++.|.. +.+.| |++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~V-LvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDC-LVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSE-EEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCceE-EEccCh
Confidence 456777777777766778999999999999999999999999999999999999999999999983 44454 889999
Q ss_pred ccccccccccceeEEecC-----CCCcchhhhhhHHHHHHh
Q psy10684 137 GGLGINLATADVVVLYDS-----DWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~-----~wnp~~~~Qa~~R~~R~G 172 (288)
.++|+|++.++.||++|. |+++..+.|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-13 Score=127.75 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..+...++..|......+.++||||+....++.|...|...|+++..+||.+++.+|.++++.|+. +.+.| |++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~V-LVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL--GKYDV-LVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH--TSCSE-EEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc--CCeEE-EEecch
Confidence 356677777777666678899999999999999999999999999999999999999999999983 44444 889999
Q ss_pred ccccccccccceeEEecC-----CCCcchhhhhhHHHHHHhhhcc
Q psy10684 137 GGLGINLATADVVVLYDS-----DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~-----~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
.++|+|++.++.||++|. |+++..+.|++||++|. ..|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~ 548 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGR 548 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCE
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCE
Confidence 999999999999999998 89999999999999997 4443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-14 Score=131.74 Aligned_cols=98 Identities=26% Similarity=0.349 Sum_probs=75.3
Q ss_pred hhhhccccchhhhhhccCCCcccccc----cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccc
Q psy10684 185 MSRYRAPFHQLRIAYGANKGKNYTEE----EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT 260 (288)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e~----~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~ 260 (288)
+.+.....++++++.......+...+ ..|+.+..++|+++.++|++++++|+ +.++++++|+|++++|.|+|+++
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~-~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHH-HCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEecccccCCCchhh
Confidence 33333445566666555443333332 23788899999999999999999999 66677889999999999999999
Q ss_pred cceEEEeCCCCChhhhhhhhhhh
Q psy10684 261 ADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 261 a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++||++||+|||..+.||++|+
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~ 435 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRV 435 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTT
T ss_pred CCEEEEeCCCCCcchHHHHHHHH
Confidence 99999999999999999999999
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-13 Score=127.82 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||.+....+.|...|...|+++..+||.....+|.-+...|+ .+ . ++++|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr--~G--~-VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR--RG--G-VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS--TT--C-EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC--CC--e-EEEecc
Confidence 346888999988877778889999999999999999999999999999999987666666667776 22 2 389999
Q ss_pred ccccccccccc----------------------------------------------------ceeEEecCCCCcchhhh
Q psy10684 136 AGGLGINLATA----------------------------------------------------DVVVLYDSDWNPQMDLQ 163 (288)
Q Consensus 136 ~~~~Glnl~~a----------------------------------------------------~~vi~~d~~wnp~~~~Q 163 (288)
.+|||+|+... .|||++|.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999954 59999999999999999
Q ss_pred hhHHHHHHhhhcch
Q psy10684 164 AMVREAKILRRGSI 177 (288)
Q Consensus 164 a~~R~~R~Gq~~~v 177 (288)
++||++|.|..|..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999999874
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=113.36 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCC
Q psy10684 180 ALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 256 (288)
Q Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~gl 256 (288)
.+...+..+.+..++++++++.+...++.|+ ..++.|+|+||++.. ++++. .+..++++|+ +++||.|+
T Consensus 113 ~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~------~~~~~~i~Ll-tsag~~gi 184 (328)
T 3hgt_A 113 VLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA------NDFSCTVHLF-SSEGINFT 184 (328)
T ss_dssp HHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEEEEEE-ESSCCCTT
T ss_pred HHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc------ccCCceEEEE-ECCCCCCc
Confidence 3445566777889999999999999998886 468999999999554 32221 2456788887 57888887
Q ss_pred C-----ccccceEEEeCCCCChhhh-hhhhhhh
Q psy10684 257 N-----LATADVVVLYDSDWNPQMD-LQAMVRT 283 (288)
Q Consensus 257 n-----l~~a~~v~~~d~~wnp~~~-~Qa~~Ra 283 (288)
| +++||.||++|++|||+.+ -||++||
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 5 8999999999999999999 7999986
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-12 Score=129.22 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=98.7
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+......++.. ...+.+++|||+....++.+...|... ++.+..+||+++.++|.++++.|++ +.+.| |++|
T Consensus 796 ~~~~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~V-LVaT 871 (1151)
T 2eyq_A 796 YDSMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNV-LVCT 871 (1151)
T ss_dssp CCHHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCE-EEES
T ss_pred CCHHHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcE-EEEC
Confidence 3344444444444 456789999999999999999999887 8899999999999999999999984 44455 8899
Q ss_pred ccccccccccccceeEEecC-CCCcchhhhhhHHHHHHhhhcc
Q psy10684 135 RAGGLGINLATADVVVLYDS-DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~-~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++++|+|++.+++||++++ +|++..+.|++||+||.|+++.
T Consensus 872 ~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~ 914 (1151)
T 2eyq_A 872 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 914 (1151)
T ss_dssp STTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEE
T ss_pred CcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceE
Confidence 99999999999999999998 6899999999999999997754
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.7e-12 Score=121.03 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=88.9
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 154 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~ 154 (288)
...+||+.....++.+...|...++.+..+||++++++|.+.++.|+.+++..+| |++|+++++|+|+ .+++||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCc
Confidence 4558889999999999999999999999999999999999999999953355566 8999999999999 9999999999
Q ss_pred --------------CCCcchhhhhhHHHHHHhhh
Q psy10684 155 --------------DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 155 --------------~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
|++++.+.|++||+||.|+.
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 88999999999999999976
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=112.57 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=59.3
Q ss_pred chhhhcccCC--------CccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDG--------QTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G--------~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+.+..++| +++.++|++.+++|+ + +.+.| |+++.++|.|+|++++++||++|++|||....|+++||
T Consensus 384 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~-~~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~ 460 (494)
T 1wp9_A 384 DGIKAKRFVGQASKENDRGLSQREQKLILDEFA-R-GEFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 460 (494)
T ss_dssp TTCCEEEECCSSCC-------CCHHHHHHHHHH-H-TSCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTS
T ss_pred cCCCcEEEeccccccccccCCHHHHHHHHHHHh-c-CCceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhc
Confidence 3778899999 999999999999999 3 33444 67889999999999999999999999999999999999
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-12 Score=125.62 Aligned_cols=109 Identities=15% Similarity=0.053 Sum_probs=92.5
Q ss_pred HHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcE---------------------------------------EE
Q psy10684 63 LDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFK---------------------------------------YC 102 (288)
Q Consensus 63 l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~---------------------------------------~~ 102 (288)
+..++..+... ..++|||+.+...++.+...|...++. +.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 44455544433 459999999999999999988765442 67
Q ss_pred EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ecC----CCCcchhhhhhHHHHHHhhh
Q psy10684 103 RLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YDS----DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 103 ~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d~----~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.+||+++..+|..+.+.|++ +.++| |++|+++++|+|++.++.||+ ||. ||++..|.|++||+||.|+.
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~--G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQE--GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHT--TCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHhc--CCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 89999999999999999984 45555 889999999999999999999 999 99999999999999999984
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-12 Score=116.42 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=79.1
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
.+.+.++||||+....++.+...|...++++..+|| ++|.++++.|++ +.+.| |++|++.++|+|++ +++||
T Consensus 174 ~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~--g~~~v-LVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 174 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ--KKPDF-ILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp HHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC----------CCCSE-EEESSSTTCCTTCC-CSEEE
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC--CCceE-EEECChhheeeccC-ceEEE
Confidence 345789999999999999999999999999999999 468889999984 34455 88999999999999 99998
Q ss_pred E-------------------ecCCCCcchhhhhhHHHHHH-hhhcc
Q psy10684 151 L-------------------YDSDWNPQMDLQAMVREAKI-LRRGS 176 (288)
Q Consensus 151 ~-------------------~d~~wnp~~~~Qa~~R~~R~-Gq~~~ 176 (288)
+ ++.|.+++.+.|++||++|. |+++.
T Consensus 246 ~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~ 291 (440)
T 1yks_A 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 291 (440)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred eCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCce
Confidence 5 89999999999999999998 45543
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=117.46 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=87.3
Q ss_pred HHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------------------------cEEEEeeCC
Q psy10684 64 DKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------------------------FKYCRLDGQ 107 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~G~ 107 (288)
...+.+....+.++|||++....++.+...|.... ..+..+||+
T Consensus 242 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~ 321 (715)
T 2va8_A 242 IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG 321 (715)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC
Confidence 44444444567899999999999999998887542 237889999
Q ss_pred CCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec-------CCCCcchhhhhhHHHHHHhhh
Q psy10684 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-------SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 108 ~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d-------~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
++.++|..+.+.|.+ +.++| |++|++++.|+|+++.+.||. || .|+++..+.|++||+||.|+.
T Consensus 322 l~~~~r~~v~~~f~~--g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 322 LSKALRDLIEEGFRQ--RKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp SCHHHHHHHHHHHHT--TCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred CCHHHHHHHHHHHHc--CCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 999999999999983 45555 899999999999999999999 99 799999999999999999964
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-12 Score=123.31 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=96.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchH--------HHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTR--------MLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~--------~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~ 124 (288)
...+...+.+.+......+.+++|||+..+ .++.+...|.. .++.+..+||+++.++|.++++.|+++
T Consensus 560 ~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G- 638 (780)
T 1gm5_A 560 PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG- 638 (780)
T ss_dssp CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-
Confidence 445666677777766677889999998653 46677788877 478889999999999999999999843
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcch
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++| |++|++.++|+|+++++.||++++++ +.+.+.|++||++|.|+.+.+
T Consensus 639 -~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ 690 (780)
T 1gm5_A 639 -RYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 690 (780)
T ss_dssp -SSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred -CCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEE
Confidence 4444 88999999999999999999999985 678888999999999988754
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=112.11 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=84.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.++|||++....++.+...|...|+.+..+||++ ++++++.|++ +..+| |++|+++++|+|++. ++||+
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~--g~~~v-LVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL--TDWDF-VVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS--SCCSE-EEECGGGGSSCCCCC-SEEEE
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc--CCceE-EEECCHHHhCcCCCC-CEEEE
Confidence 3467999999999999999999999999999999965 4678999984 34444 899999999999999 99999
Q ss_pred ec--------------------CCCCcchhhhhhHHHHHHhh
Q psy10684 152 YD--------------------SDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 152 ~d--------------------~~wnp~~~~Qa~~R~~R~Gq 173 (288)
++ .|.++..+.|++||++|.|.
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 98 88999999999999999997
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=118.19 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=88.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh-----------cCcEEEEeeCCCCHHHHHHHHHhhcCC---CCCeeEEEEeccccc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW-----------RGFKYCRLDGQTAHEDRQRQINDFNME---GSDIFIFMLSTRAGG 138 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~-----------~~~~~~~~~G~~~~~~R~~~i~~F~~~---~~~~~vll~s~~~~~ 138 (288)
.+.++|||++....++.+...|.. .++.+..+||+++.++|.++++.|... .+..+| |++|++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV-lVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV-VISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE-EEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE-EEeCcHHH
Confidence 468999999999999999998875 588999999999999999999999611 345555 89999999
Q ss_pred ccccccccceeEEecC------------------CCCcchhhhhhHHHHHHhhhcc
Q psy10684 139 LGINLATADVVVLYDS------------------DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~------------------~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|+|+.++++||+++. |.+...+.|++||+||. +.|.
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~ 435 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGK 435 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEE
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCE
Confidence 9999999999999766 78889999999999998 4444
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-12 Score=116.00 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=82.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.++|||++....++.+...|...++.+..+||. +|.++++.|++ +..+| |++|+++++|+|++. ++||+
T Consensus 188 ~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~--g~~~i-LVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 188 EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN--GDWDF-VITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS--CCCSE-EEESSCC---CCCSC-SEEEE
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC--CCceE-EEECChHHhCeecCC-CEEEE
Confidence 346799999999999999999999999999999994 67788999984 34445 899999999999999 99998
Q ss_pred --------------------ecCCCCcchhhhhhHHHHHHhh-hcc
Q psy10684 152 --------------------YDSDWNPQMDLQAMVREAKILR-RGS 176 (288)
Q Consensus 152 --------------------~d~~wnp~~~~Qa~~R~~R~Gq-~~~ 176 (288)
||.|.++..+.|++||++|.|. .+.
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~ 305 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGD 305 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCe
Confidence 7899999999999999999996 543
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-11 Score=117.74 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=86.2
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
.+.+.++||||+....++.+...|...++++..+|| ++|.++++.|++ +..+| |++|++.++|+|++ +++||
T Consensus 407 ~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~--g~~~V-LVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKN--GDWDF-VITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGT--CCCSE-EEECGGGGTTCCCC-CSEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHC--CCceE-EEECchhhcceeeC-CcEEE
Confidence 346789999999999999999999999999999999 479999999984 34455 88999999999999 99999
Q ss_pred E--------------------ecCCCCcchhhhhhHHHHHH-hhhcc
Q psy10684 151 L--------------------YDSDWNPQMDLQAMVREAKI-LRRGS 176 (288)
Q Consensus 151 ~--------------------~d~~wnp~~~~Qa~~R~~R~-Gq~~~ 176 (288)
+ ||.|.+++.+.|++||++|. |+.+.
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ 525 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD 525 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE
Confidence 7 56888889999999999999 66643
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=117.32 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=88.5
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhc------------------------------CcEEEEeeCCCCHHHHHH
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWR------------------------------GFKYCRLDGQTAHEDRQR 115 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~------------------------------~~~~~~~~G~~~~~~R~~ 115 (288)
++.+....+.++|||++....++.+...|... +..+..+||+++.++|..
T Consensus 234 ~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 234 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 33333456789999999999999888877643 124567999999999999
Q ss_pred HHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec---CCCCcchhhhhhHHHHHHhhh
Q psy10684 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD---SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 116 ~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d---~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.+.|.+ +.++| |++|++++.|+|+++.+.||. || .|+++..+.|++||+||.|+.
T Consensus 314 v~~~f~~--g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 314 VEDAFRR--GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp HHHHHHT--TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHHHC--CCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999983 45555 889999999999999999998 66 788999999999999999964
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-11 Score=122.59 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcE--------------------------------------
Q psy10684 60 MVVLDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFK-------------------------------------- 100 (288)
Q Consensus 60 ~~~l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~-------------------------------------- 100 (288)
...+..++..+... ..++|||+.....++.+...|...++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 34455555555444 469999999999999999888654433
Q ss_pred -EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcch--------hhhhhHHHHHH
Q psy10684 101 -YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM--------DLQAMVREAKI 171 (288)
Q Consensus 101 -~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~--------~~Qa~~R~~R~ 171 (288)
+..+||++++.+|..+++.|.. +.++| |++|+++++|+|++.++.||+++.+|++.. |.|++||++|.
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~--G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~ 582 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQE--GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 582 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHH--TCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCS
T ss_pred CeeeecCCCCHHHHHHHHHHHhC--CCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCC
Confidence 6889999999999999999984 44555 899999999999999999999988887664 99999999999
Q ss_pred hhh
Q psy10684 172 LRR 174 (288)
Q Consensus 172 Gq~ 174 (288)
|+.
T Consensus 583 G~d 585 (1108)
T 3l9o_A 583 GLD 585 (1108)
T ss_dssp SSC
T ss_pred CCC
Confidence 953
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=116.23 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=88.4
Q ss_pred HHHHHhCCCeEEEEecchHHHHHHHHHHhhc------------------C---------------cEEEEeeCCCCHHHH
Q psy10684 67 LPKLKAQESRVLIFSQMTRMLDILEDYCYWR------------------G---------------FKYCRLDGQTAHEDR 113 (288)
Q Consensus 67 l~~~~~~~~kviIFs~~~~~~~~l~~~l~~~------------------~---------------~~~~~~~G~~~~~~R 113 (288)
+.+....+.++|||++....++.+...|... + ..+..+||+++.++|
T Consensus 230 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 230 VYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 3333456789999999999999988887653 1 137889999999999
Q ss_pred HHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec----CCCCcchhhhhhHHHHHHhhh
Q psy10684 114 QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD----SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 114 ~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d----~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
..+.+.|.+ +.++| |++|++.+.|+|++..+.||. || .|+++..+.|++||+||.|+.
T Consensus 310 ~~v~~~f~~--g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 310 VLVEENFRK--GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp HHHHHHHHT--TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred HHHHHHHHC--CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 999999983 45555 889999999999999999998 77 688999999999999999853
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-11 Score=115.32 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=83.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee--
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV-- 149 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v-- 149 (288)
+.+.++|||++....++.+...|...++++..+||. +|.++++.|+++ ..+| |++|+++++|+|+. +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g--~~~V-LVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT--DWDF-VVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS--CCSE-EEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC--CcEE-EEECcHHHcCcccC-ceEEEE
Confidence 457799999999999999999999999999999984 788899999843 4444 89999999999996 8888
Q ss_pred ------------------EEecCCCCcchhhhhhHHHHHHhh
Q psy10684 150 ------------------VLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 150 ------------------i~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
|++|.|-++..|.|++||++|.|.
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 788888999999999999999975
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-11 Score=123.59 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=69.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe--
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS-- 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s-- 133 (288)
...|...|.++++.. +.++||||+....++.+...|... +++..+||++ .++++.|++ +..+|++.+
T Consensus 260 ~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~--G~~~VLVaTas 328 (1054)
T 1gku_B 260 NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVE--GEIDHLIGTAH 328 (1054)
T ss_dssp SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHH--TSCSEEEEECC
T ss_pred chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHc--CCCcEEEEecC
Confidence 566777777777542 679999999999999999999988 9999999988 367899983 455664443
Q ss_pred -ccccccccccccc-ceeEEecCC
Q psy10684 134 -TRAGGLGINLATA-DVVVLYDSD 155 (288)
Q Consensus 134 -~~~~~~Glnl~~a-~~vi~~d~~ 155 (288)
|+++++|+|++.+ ++||++|+|
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCC
T ss_pred CCCeeEeccccCCcccEEEEeCCC
Confidence 9999999999995 999999999
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=117.96 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=76.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe-
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDGQTAHEDRQRQINDFNMEGSDIFIFMLS- 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s- 133 (288)
...|...|.++++. .+.++|||++....++.+...|...|+++. .+|| +|.+ ++.|++ +..+| |++
T Consensus 294 ~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~--G~~~V-LVat 361 (1104)
T 4ddu_A 294 SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV--GKINI-LIGV 361 (1104)
T ss_dssp SCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH--TSCSE-EEEE
T ss_pred ecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC--CCCCE-EEEe
Confidence 44688888888876 347999999999999999999999999998 9999 3555 999984 45566 556
Q ss_pred ---cccccccccccc-cceeEEecCCC
Q psy10684 134 ---TRAGGLGINLAT-ADVVVLYDSDW 156 (288)
Q Consensus 134 ---~~~~~~Glnl~~-a~~vi~~d~~w 156 (288)
|+++++|+|++. +++||+||+|-
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999997
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-10 Score=107.12 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=83.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce---
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV--- 148 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~--- 148 (288)
+.+.++||||+....++.+...|...++++..+||+ +|.++++.|+++ ...| |++|++.++|+|++ ..+
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g--~~~v-LVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE--KWDF-VITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS--CCSE-EEECGGGGTSCCCC-CSEEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC--CCeE-EEECchHHcCcccC-CcEEEe
Confidence 446799999999999999999999999999999996 578899999843 4444 89999999999998 544
Q ss_pred --------------eEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 149 --------------VVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 149 --------------vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
||+++.|.++..+.|++||++|.|..
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 67889999999999999999999853
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=112.92 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc--------------------------------------
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF-------------------------------------- 99 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~-------------------------------------- 99 (288)
.++..+.+.+.. ....++|||+.+...++.+...|...++
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 455566666554 3457999999999999999999977655
Q ss_pred -EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCC---------CcchhhhhhHHHH
Q psy10684 100 -KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW---------NPQMDLQAMVREA 169 (288)
Q Consensus 100 -~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w---------np~~~~Qa~~R~~ 169 (288)
.+..+||++++.+|..+++.|.. +.++| |++|++.++|+|++. ..||+++.+. ++..|.|++||++
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~--G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSK--GFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHT--TCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHC--CCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 36889999999999999999984 44555 899999999999999 6666644444 8999999999999
Q ss_pred HHhhh
Q psy10684 170 KILRR 174 (288)
Q Consensus 170 R~Gq~ 174 (288)
|.|+.
T Consensus 476 R~G~~ 480 (997)
T 4a4z_A 476 RRGLD 480 (997)
T ss_dssp CTTTC
T ss_pred cCCCC
Confidence 99854
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-10 Score=109.84 Aligned_cols=92 Identities=18% Similarity=0.085 Sum_probs=79.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE--
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV-- 150 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi-- 150 (288)
++.++|||++..+.++.+.+.|...++++..+||++++++ |.. .+.+| |++|+++++|+|+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~~V-LVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGDVV-VVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSCEE-EEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCCcE-EEECChHHccCCCC-CcEEEec
Confidence 4679999999999999999999999999999999998775 331 22244 89999999999986 99888
Q ss_pred --------Eec-----------CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 151 --------LYD-----------SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 151 --------~~d-----------~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|| .|-++..|.||+||++| |+.+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 677 78888999999999999 88764
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.1e-10 Score=103.39 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=23.6
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|.....++|+++.++|.+++++|+ .++.+.| |+++.++|.|+|++.++.||+||++|||....|+++|+
T Consensus 426 g~~~~~~~~~~~~~~R~~~~~~F~-~~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRg 494 (556)
T 4a2p_A 426 GRGRRDQTTGMTLPSQKGVLDAFK-TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRG 494 (556)
T ss_dssp -----------------------------CCE-EEEEC-----------CEEEEETCCSCHHHHHHC----
T ss_pred ccCCcccccccCHHHHHHHHHHhc-ccCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCC
Confidence 445556678899999999999999 4466665 57789999999999999999999999999999999994
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=104.99 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=28.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|.....++|+++.++|.+++++|+ .++.+. +|+++.++|.|+|++.++.||+||++|||....|+++|+
T Consensus 667 G~~~~~~hg~~~~~eR~~~l~~F~-~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRG 735 (797)
T 4a2q_A 667 GRGRRDQTTGMTLPSQKGVLDAFK-TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRG 735 (797)
T ss_dssp ----------------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC----
T ss_pred ecCCcccCCCCCHHHHHHHHHHhh-ccCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCC
Confidence 455667788899999999999999 435555 567889999999999999999999999999999999994
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.9e-09 Score=95.06 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=59.3
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....++|+++..+|++++++|+ +..+.| |+++.+++.|+|++.++.||++|++|||....|+++||
T Consensus 370 ~~~~~~g~~~~~~R~~~~~~F~--~g~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~ 435 (472)
T 2fwr_A 370 LIPAITHRTSREEREEILEGFR--TGRFRA-IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 435 (472)
T ss_dssp TCCBCCSSSCSHHHHTHHHHHH--HSSCSB-CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHS
T ss_pred CcceeeCCCCHHHHHHHHHHHh--CCCCCE-EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhc
Confidence 4567899999999999999998 345555 56779999999999999999999999999999999998
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.9e-09 Score=82.87 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=61.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++..+|.+.+++|+ +....| |+++.+++.|+|+..+++||++|++|||....|+++||
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~ 122 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFK--DFQRRI-LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 122 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CCCCcE-EEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhccc
Confidence 566788999999999999999998 445555 45669999999999999999999999999999999998
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.9e-09 Score=81.72 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=61.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++..+|.+.+++|+ +..+.| |+++.+++.|+|+..+++||++|++|+|....|+++||
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~--~g~~~v-lv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~ 126 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFK--RGEYRY-LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhcccc
Confidence 567888999999999999999998 445554 46779999999999999999999999999999999998
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.3e-09 Score=103.73 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCC-CeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGS-DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~-~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+.+..++|+++..+|.+++++|+ +.. .+.| |+++.++|.|+|++.+++||++|++|||....|+++|+
T Consensus 527 ~g~~~~~lhG~~~~~~R~~~l~~F~-~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 527 EGIRAAVFHEGMSIIERDRAAAWFA-EEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRL 597 (968)
T ss_dssp TCCCEEEECTTSCTTHHHHHHHHHH-STTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHh-CCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcc
Confidence 3788899999999999999999999 443 3554 55779999999999999999999999999999999998
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.9e-09 Score=83.57 Aligned_cols=68 Identities=18% Similarity=0.366 Sum_probs=47.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++..+|.+.+++|+ +..+.| |+++.+++.|+|+..++.||.+|++|+|....|+++||
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~ 137 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFR--SGKSPI-LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 137 (185)
T ss_dssp TCCEEEEC--------CHHHHHHH--HTSSSE-EEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTB
T ss_pred CCceEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHcccc
Confidence 567788999999999999999998 344454 56779999999999999999999999999999999998
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=79.49 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=60.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++..+|.+.+++|+ +....| |+++.+++.|+|+..++.||.+|++|+|....|+++||
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~v-lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~ 121 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFR--SGSSRI-LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--cCCCEE-EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 566788999999999999999998 445555 45679999999999999999999999999999999998
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.8e-09 Score=83.45 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++.++|.+.+++|+ +..+.| |+++.+++.|+|++.++.||++|++|+|....|+++||
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~--~g~~~v-LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~ 145 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFR--EGKKDV-LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRT 145 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--HTSCSE-EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHh--cCCCEE-EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCcc
Confidence 567788999999999999999998 334454 56779999999999999999999999999999999998
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.8e-09 Score=96.81 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=39.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|..+..++|+++.++|++++++|+ +++.+.| |+++.++|.|+|++.+++||+||++|||....|+++|+
T Consensus 425 g~~~~~~~~~~~~~~R~~~~~~F~-~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRg 493 (555)
T 3tbk_A 425 GRGRTNRATGMTLPAQKCVLEAFR-ASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRG 493 (555)
T ss_dssp C---------------------------CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCC
T ss_pred ecCCcccccccCHHHHHHHHHHHh-cCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCcC
Confidence 345556677999999999999999 4466665 56889999999999999999999999999999999994
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4e-07 Score=81.38 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||++|++|++....|+++||
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~ 341 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQQFK--DFQRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 341 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTCCS-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHh--cCCCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 566788999999999999999998 34444 456779999999999999999999999999999999998
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.7e-09 Score=83.12 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=61.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|.+.+++|+ +..+. +|+++.+++.|+|+..+++||++|++|+|....|+++||
T Consensus 53 ~~~~~~~~~g~~~~~~r~~~~~~f~--~g~~~-vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~ 121 (170)
T 2yjt_D 53 AGINNCYLEGEMVQGKRNEAIKRLT--EGRVN-VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121 (170)
Confidence 3678889999999999999999998 44445 556779999999999999999999999999999999998
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=90.58 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred hhhcccC--------CCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLD--------GQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~--------G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+....+. |+++.++|++++++|+ .++.+.| |+++.++|.|+|++.++.||.+|++|||....|+++|+
T Consensus 427 ~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~-~~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRG 502 (696)
T 2ykg_A 427 LKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 502 (696)
T ss_dssp CCEEC------------------------------CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------
T ss_pred cceeEEEccCCCccccCCCHHHHHHHHHHHH-hcCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhccC
Confidence 5666664 5999999999999998 4355665 67889999999999999999999999999999999993
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-08 Score=99.31 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=29.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|..+..++|+++..+|.+++++|+ .++.+. +|+++.++|.|+|++.++.||+||++|||....|+++|+
T Consensus 667 G~~~~~~hg~m~~~eR~~il~~Fr-~~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRG 735 (936)
T 4a2w_A 667 GRGRRDQTTGMTLPSQKGVLDAFK-TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRG 735 (936)
T ss_dssp ----------------------------CCS-EEEEECC------CCCCSEEEEESCCSCSHHHHCC----
T ss_pred cCCCcccCCCCCHHHHHHHHHHhh-ccCCee-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCCC
Confidence 455666788899999999999999 435555 567889999999999999999999999999999999995
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=88.08 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=137.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.++|....+..+-.....+.+++|.+..+..+......+.. .++.+..++|..+..++...+.... .+.+.|++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~--~g~~dIvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA--EGKIDILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH--TTCCSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh--cCCCCEEE
Confidence 68999776544444456678999999998877766665543 3678899999999999988888886 34456666
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc-------c----------------------------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG-------S---------------------------- 176 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~-------~---------------------------- 176 (288)
.+.......+.+.....||+=+-.-=.... ........... +
T Consensus 712 ~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~---~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~ 788 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRH---KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 788 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEEESGGGSCHHH---HHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBC
T ss_pred ECHHHHhCCccccccceEEEechHhcChHH---HHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccc
Confidence 665655555666666555543322100000 00111111100 0
Q ss_pred h--------HHHHHHHhhhhccccchhhhhhccCCCcccccc---c--chhhhcccCCCccccchhHHHhhcccCCCCee
Q psy10684 177 I--------KKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---E--DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIF 243 (288)
Q Consensus 177 v--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~--~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~ 243 (288)
+ +..+.+.+.+......+++++...........+ + .++....++|+++..+|.+++++|. +..+.
T Consensus 789 i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~--~g~~~ 866 (1151)
T 2eyq_A 789 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--HQRFN 866 (1151)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH--TTSCC
T ss_pred cEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH--cCCCc
Confidence 0 011111111111122333333222221111111 1 1567888999999999999999998 44555
Q ss_pred EEEEeecccccCCCccccceEEEeCC-CCChhhhhhhhhhh
Q psy10684 244 IFMLSTRAGGLGINLATADVVVLYDS-DWNPQMDLQAMVRT 283 (288)
Q Consensus 244 v~l~s~~agg~glnl~~a~~v~~~d~-~wnp~~~~Qa~~Ra 283 (288)
| |+++...+.|+|+..+++||++++ .|+++...|.++|+
T Consensus 867 V-LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRv 906 (1151)
T 2eyq_A 867 V-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 906 (1151)
T ss_dssp E-EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTC
T ss_pred E-EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhcc
Confidence 4 567789999999999999999998 59999999999998
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=85.69 Aligned_cols=218 Identities=14% Similarity=0.085 Sum_probs=131.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+......+.+++|.+.....+......+. ..++++..++|+++..+|...++.... +.+.|++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 6899887655554444567899999998887666555444 348999999999999999988888863 3345555
Q ss_pred EecccccccccccccceeEEecCC-------------------------CCcchhhhhhHHHHHHhh------------h
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSD-------------------------WNPQMDLQAMVREAKILR------------R 174 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~-------------------------wnp~~~~Qa~~R~~R~Gq------------~ 174 (288)
.+.......+.+.....||+=+-+ ..|...... ..|. .
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~-----~~g~~~~s~i~~~p~~r 551 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALA-----FYGDLDVTVIDEMPPGR 551 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHH-----HTCCSSCEEECCCCSSC
T ss_pred ECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHH-----HhCCcceeeeeccCCCC
Confidence 544333333444444444443322 122111100 0000 0
Q ss_pred cch---------HHHHHHHhhhhccccchhhhhhccCCC---------cc----ccc-ccchhhhcccCCCccccchhHH
Q psy10684 175 GSI---------KKALEAKMSRYRAPFHQLRIAYGANKG---------KN----YTE-EEDRYLYCRLDGQTAHEDRQRQ 231 (288)
Q Consensus 175 ~~v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~e-~~~gi~~~~l~G~~~~~~R~~~ 231 (288)
.++ ...+.+.+.+......++++....... .. +.+ .-.++....++|+++.++|+++
T Consensus 552 ~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 552 KEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp CCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHH
T ss_pred cceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 011 122222222222223333333221100 00 111 1135678899999999999999
Q ss_pred HhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 232 INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 232 i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
+++|. +..+.| |+++.+.+.|+|+..++.||++|+++ +.+.-.|.++||
T Consensus 632 ~~~F~--~G~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRa 681 (780)
T 1gm5_A 632 MLEFA--EGRYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRV 681 (780)
T ss_dssp HHHHT--TTSSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTS
T ss_pred HHHHH--CCCCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhccc
Confidence 99998 445554 56889999999999999999999984 677778999998
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.4e-07 Score=79.14 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=60.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..++.||+++++|+|....|+++||
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~ 329 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFK--QKKIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 329 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHH--TTSSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTT
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHH--cCCCe-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccc
Confidence 567788999999999999999998 34444 455779999999999999999999999999999999998
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-07 Score=77.44 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=61.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++.++|.+.++.|+ +...+| |+++.+.+.|+|+...++||.+|++|+|....|.++||
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~--~g~~~v-lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~ 122 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFR--QGEVRV-LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRT 122 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHH--SSSCCE-EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTB
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CCCCeE-EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhccc
Confidence 567788999999999999999998 445555 56779999999999999999999999999999999998
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-07 Score=75.34 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=56.7
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCCh------hhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP------QMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp------~~~~Qa~~Ra 283 (288)
|+....++|+++..+|.+.+++|+ +..+.| |+++.+++.|+|++.+++||.+|++||| ....|.++||
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~--~g~~~v-LvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~ 131 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFR--DGKEKV-LITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRT 131 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHH--TTSCSE-EEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhccc
Confidence 567788999999999999999998 445554 5677999999999999999999999655 5556999998
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=78.25 Aligned_cols=69 Identities=16% Similarity=0.336 Sum_probs=61.7
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+++++|. +.... +|+++.+.+.|+|+...++||.+|++|++....|.++|+
T Consensus 323 ~~~~~~~lhg~~~~~~R~~~l~~F~--~g~~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~ 391 (434)
T 2db3_A 323 KEFPTTSIHGDRLQSQREQALRDFK--NGSMK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRT 391 (434)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHH--TSSCS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHH--cCCCc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhccc
Confidence 3677889999999999999999998 44445 456779999999999999999999999999999999998
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-07 Score=91.18 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=58.3
Q ss_pred hhhhcccCCC--------ccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQ--------TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~--------~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|. ++.++|.+++++|+ ++.+.| |+++.++|.|+|++.++.||++|++|||....|+++||
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~--~g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA 505 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFR--TGKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRA 505 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHC--C---CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHh--cCCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCC
Confidence 6888899999 99999999999998 455554 56889999999999999999999999999999999998
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.7e-07 Score=79.96 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=0.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||++|++|++....|+++||
T Consensus 281 ~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~ 350 (394)
T 1fuu_A 281 NDKFTVSAIYSDLPQQERDTIMKEFR--SGSSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 350 (394)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HcCCeEEEeeCCCCHHHHHHHHHHHH--CCCCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcc
Confidence 34778899999999999999999998 44444 556889999999999999999999999999999999998
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.6e-06 Score=78.57 Aligned_cols=222 Identities=11% Similarity=0.100 Sum_probs=134.9
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
...++|-.+..--+ + ..+.++||.+.....+......|...|+++..++|+.+..++...........+...+++++
T Consensus 67 pTGsGKTl~~~lpa--l-~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 67 PTGGGKSLCYQLPA--L-CSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp CTTSCTTHHHHHHH--H-TSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred CCCChHHHHHHHHH--H-HcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 34688876432221 2 23568999999999988888888888999999999999998888888774345667777777
Q ss_pred cccccc----------cccccccceeEEecC----CCC----cchhhhhhHHHHHHhh-------hcchHHHHHHHhhhh
Q psy10684 134 TRAGGL----------GINLATADVVVLYDS----DWN----PQMDLQAMVREAKILR-------RGSIKKALEAKMSRY 188 (288)
Q Consensus 134 ~~~~~~----------Glnl~~a~~vi~~d~----~wn----p~~~~Qa~~R~~R~Gq-------~~~v~~~i~~~~~~~ 188 (288)
+..... ...+...+.+|+=|. .|. |.. ..++...+.-. +.+....+.+.+.+.
T Consensus 144 pe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~--~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~ 221 (591)
T 2v1x_A 144 PEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY--KALGILKRQFPNASLIGLTATATNHVLTDAQKI 221 (591)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG--GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHH
T ss_pred hhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH--HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHH
Confidence 653321 111223333333222 232 221 12222222111 111111111111100
Q ss_pred ----------------------------------------cc--ccchhhhhhccCCCc-cccc--ccchhhhcccCCCc
Q psy10684 189 ----------------------------------------RA--PFHQLRIAYGANKGK-NYTE--EEDRYLYCRLDGQT 223 (288)
Q Consensus 189 ----------------------------------------~~--~~~~~~~~~~~~~~~-~~~e--~~~gi~~~~l~G~~ 223 (288)
.. .....+++....... .+.+ ...|+....++|++
T Consensus 222 l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l 301 (591)
T 2v1x_A 222 LCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANL 301 (591)
T ss_dssp TTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred hCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 00 011111111100000 0000 12367788999999
Q ss_pred cccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 224 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 224 ~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.++|.+.+++|. +..+. +|+++.+.|.|+|+...+.||++++++++....|.++||
T Consensus 302 ~~~~R~~~~~~F~--~g~~~-VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRa 358 (591)
T 2v1x_A 302 EPEDKTTVHRKWS--ANEIQ-VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358 (591)
T ss_dssp CHHHHHHHHHHHH--TTSSS-EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHH--cCCCe-EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccC
Confidence 9999999999998 44445 456779999999999999999999999999999999998
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-05 Score=73.05 Aligned_cols=219 Identities=12% Similarity=0.101 Sum_probs=127.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
..|+|..+.+-.+......+.++||.+.....+..+...+.. .++++..++|+.+..+|....+.... +...|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCCSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCCCEEE
Confidence 358999865555444456678999999999998888888877 58899999999999888777777762 2345666
Q ss_pred Eeccccccc---ccccccceeEEecCC----CC---------cchhhhhhHHHHHHhh-----------h--------cc
Q psy10684 132 LSTRAGGLG---INLATADVVVLYDSD----WN---------PQMDLQAMVREAKILR-----------R--------GS 176 (288)
Q Consensus 132 ~s~~~~~~G---lnl~~a~~vi~~d~~----wn---------p~~~~Qa~~R~~R~Gq-----------~--------~~ 176 (288)
.++.....- +++...+.||+=|.+ |. .....+.+.++.+.-. . -+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT 202 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSAT 202 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCC
T ss_pred ECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecC
Confidence 665543111 233344444443321 00 0000010111111100 0 00
Q ss_pred -----hHHHHHHHhhhh-----------------------------ccccchhhhhhccCCCccccc---ccchhhhc-c
Q psy10684 177 -----IKKALEAKMSRY-----------------------------RAPFHQLRIAYGANKGKNYTE---EEDRYLYC-R 218 (288)
Q Consensus 177 -----v~~~i~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~e---~~~gi~~~-~ 218 (288)
+...+....... .....+++++........... ...|+... .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 282 (414)
T 3oiy_A 203 AKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGET 282 (414)
T ss_dssp SSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEES
T ss_pred CCcchhHHHHHHHhhccCcCccccccccchheeeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehh
Confidence 011111111000 000112222211111000000 12355665 7
Q ss_pred cCCCccccchhHHHhhcccCCCCeeEEEEe---ecccccCCCccc-cceEEEeCCC--CChhhhhhhhhhh
Q psy10684 219 LDGQTAHEDRQRQINDFNMEGSDIFIFMLS---TRAGGLGINLAT-ADVVVLYDSD--WNPQMDLQAMVRT 283 (288)
Q Consensus 219 l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s---~~agg~glnl~~-a~~v~~~d~~--wnp~~~~Qa~~Ra 283 (288)
++|. +|+ +++|. +..+.|++.+ +.+.+.|+|+.. .++||.+|++ |++....|.++||
T Consensus 283 ~h~~----~r~--~~~f~--~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~ 345 (414)
T 3oiy_A 283 WSEF----EKN--FEDFK--VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRS 345 (414)
T ss_dssp SSCH----HHH--HHHHH--TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGG
T ss_pred hcCc----chH--HHHHh--CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCcc
Confidence 7774 343 99998 5667777765 899999999999 9999999999 9999999999998
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-07 Score=93.87 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=77.3
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc-------------------------------------CcEEEEeeCCCCHHHHHHH
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR-------------------------------------GFKYCRLDGQTAHEDRQRQ 116 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~G~~~~~~R~~~ 116 (288)
+.++|||++++..++.++..|... ...+...||+++.++|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 568999999988776666555321 1236678999999999999
Q ss_pred HHhhcCCCCCeeEEEEecccccccccccccceeEE----ecC------CCCcchhhhhhHHHHHHhhh
Q psy10684 117 INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YDS------DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 117 i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d~------~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
-+.|+ ++.++| |++|.+.+.|+|++..+.||. |++ +.++..+.|++||+||.|..
T Consensus 397 E~~F~--~G~i~v-lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d 461 (1724)
T 4f92_B 397 EDLFA--DKHIQV-LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD 461 (1724)
T ss_dssp HHHHH--TTCCCE-EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHH--CCCCeE-EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC
Confidence 99998 455666 889999999999998777763 554 34678999999999998853
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=98.25 E-value=9e-07 Score=93.02 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=77.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc----------------------------------CcEEEEeeCCCCHHHHHHHH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR----------------------------------GFKYCRLDGQTAHEDRQRQI 117 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~G~~~~~~R~~~i 117 (288)
..+.++|||+..+..++.++..|... ...+..+||+++.++|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 44678999999998877766544211 12367799999999999999
Q ss_pred HhhcCCCCCeeEEEEecccccccccccccceeEE----ec------CCCCcchhhhhhHHHHHHhhh
Q psy10684 118 NDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD------SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 118 ~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d------~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.|. .+.++| |++|.+.+.|+|++....||. || .|.++..+.|++||+||.|..
T Consensus 1233 ~lF~--~G~i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1233 QLFS--SGAIQV-VVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp HHHH--HTSBCE-EEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred HHHH--CCCCeE-EEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 9998 456666 789999999999997666662 22 245678899999999999974
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=86.03 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=78.4
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcC------------cEE-EEeeCC----------C----------CH----------
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRG------------FKY-CRLDGQ----------T----------AH---------- 110 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~------------~~~-~~~~G~----------~----------~~---------- 110 (288)
+.+++|||.+...+..+...|...+ +++ +.++|. + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999998887654 444 556653 2 11
Q ss_pred -------------------HHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 111 -------------------EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 111 -------------------~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
..|..++++|++ +.+++ |+.++...+|+|.+.+ +++++|.|..+..+.||+||+.|.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~--g~i~I-LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKN--QDIDL-LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT--TSSSE-EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHc--CCCeE-EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 137889999984 45555 7888999999999999 788999999999999999999999
Q ss_pred hhh
Q psy10684 172 LRR 174 (288)
Q Consensus 172 Gq~ 174 (288)
+..
T Consensus 693 ~~~ 695 (1038)
T 2w00_A 693 YDA 695 (1038)
T ss_dssp CCT
T ss_pred CCC
Confidence 864
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-06 Score=76.90 Aligned_cols=221 Identities=14% Similarity=0.162 Sum_probs=129.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..++|..+.. +..+ ..+.++||.+.....+......|...|+++..++|..+..++......... +...++++++
T Consensus 49 TGsGKTl~~~--lp~l-~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tp 123 (523)
T 1oyw_A 49 TGGGKSLCYQ--IPAL-LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAP 123 (523)
T ss_dssp CHHHHHHHHH--HHHH-HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECH
T ss_pred CCcHHHHHHH--HHHH-HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECH
Confidence 3678876432 2222 234689999999999888888899999999999999998888877777752 3456666665
Q ss_pred ccccc-----cccccccceeEEec----CCCCcch--hhhhhHHHHHHh-------hhcchH----HHHHHHhh------
Q psy10684 135 RAGGL-----GINLATADVVVLYD----SDWNPQM--DLQAMVREAKIL-------RRGSIK----KALEAKMS------ 186 (288)
Q Consensus 135 ~~~~~-----Glnl~~a~~vi~~d----~~wnp~~--~~Qa~~R~~R~G-------q~~~v~----~~i~~~~~------ 186 (288)
..... .+.....+.||+=| ..|.... ....+++..+.- =+.+.. ..+...+.
T Consensus 124 e~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 203 (523)
T 1oyw_A 124 ERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (523)
T ss_dssp HHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEE
T ss_pred HHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE
Confidence 53321 11112222222221 1232110 111222221110 011111 11111110
Q ss_pred --------------------------hhc-cccchhhhhhccCCCcc-ccc--ccchhhhcccCCCccccchhHHHhhcc
Q psy10684 187 --------------------------RYR-APFHQLRIAYGANKGKN-YTE--EEDRYLYCRLDGQTAHEDRQRQINDFN 236 (288)
Q Consensus 187 --------------------------~~~-~~~~~~~~~~~~~~~~~-~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~ 236 (288)
-+. ......+++.......+ +.+ ...|+....++|+++.++|.+..++|.
T Consensus 204 ~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 204 QISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp EECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 000 00011111111100000 000 123677788999999999999999998
Q ss_pred cCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 237 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 237 ~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.+..| |+++.+.|.|+|+...+.||.++++|++....|.++||
T Consensus 284 --~g~~~v-lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 327 (523)
T 1oyw_A 284 --RDDLQI-VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (523)
T ss_dssp --TTSCSE-EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTS
T ss_pred --cCCCeE-EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccc
Confidence 344554 55779999999999999999999999999999999999
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-07 Score=85.08 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=61.2
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.....++|+++.++|++++++|+ +....|++.+..+.+.|+|+..++.||+++++|+|....|+++||
T Consensus 371 ~~~v~~~~g~~~~~~r~~i~~~f~--~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~ 439 (510)
T 2oca_A 371 YDKVYYVSGEVDTETRNIMKTLAE--NGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRV 439 (510)
T ss_dssp CSSEEEESSSTTHHHHHHHHHHHH--HCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHh--CCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcc
Confidence 347789999999999999999998 445556655559999999999999999999999999999999998
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-06 Score=78.10 Aligned_cols=69 Identities=14% Similarity=0.361 Sum_probs=61.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..+++||.+|++|++....|+++||
T Consensus 299 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (410)
T 2j0s_A 299 ANFTVSSMHGDMPQKERESIMKEFR--SGASR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 367 (410)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHH--HTSSC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTS
T ss_pred CCCceEEeeCCCCHHHHHHHHHHHH--CCCCC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccc
Confidence 3677888999999999999999998 33444 456889999999999999999999999999999999998
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-06 Score=78.16 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=55.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||.+|++|++....|.++||
T Consensus 303 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 371 (414)
T 3eiq_A 303 RDFTVSAMHGDMDQKERDVIMREFR--SGSSR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 371 (414)
T ss_dssp TTCCCEEC---CHHHHHHHHHHHHS--CC----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHH--cCCCc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcc
Confidence 3677889999999999999999998 44445 467889999999999999999999999999999999998
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-06 Score=76.92 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||++|++|++....|+++||
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~ 349 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFR--QGKVR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 349 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSSS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBS
T ss_pred CCCeEEecCCCCHHHHHHHHHHHh--cCCCc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchh
Confidence 567778999999999999999998 44444 456779999999999999999999999999999999998
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.6e-06 Score=73.94 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++..+|.++++.|. +...+| |+++...+.|+|+...++||.+|++|++....|.++||
T Consensus 52 g~~~~~lhg~l~~~~r~~~~~~f~--~g~~~v-LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRa 119 (300)
T 3i32_A 52 GHPAQALHGDMSQGERERVMGAFR--QGEVRV-LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRT 119 (300)
T ss_dssp TCCEEEECSCCCTHHHHHHHHHHH--HTSCCE-EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhh--cCCceE-EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCc
Confidence 567788999999999999999998 344554 56679999999999999999999999999999999998
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-06 Score=75.67 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=61.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC------Chhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW------NPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w------np~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..++.||.+|++| ++....|.++||
T Consensus 266 ~~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 340 (395)
T 3pey_A 266 EGHEVSILHGDLQTQERDRLIDDFR--EGRSK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT 340 (395)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHH--TTSCC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTS
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHH--CCCCC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcccc
Confidence 3677889999999999999999998 44445 467889999999999999999999999 999999999998
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-06 Score=74.71 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=58.2
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..++.||+++++|++....|+++||
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~ 307 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFR--EGEYD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRT 307 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHH--TTSCS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTB
T ss_pred hhhhcCCCCHHHHHHHHHHHH--cCCCc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCcc
Confidence 467899999999999999998 34444 466789999999999999999999999999999999998
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.3e-06 Score=79.28 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=59.6
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
...++|+++. +|++.+++|+..+....++++++.+.+.|+|+..++.||+++++|+|....|+++||-
T Consensus 474 ~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~ 541 (590)
T 3h1t_A 474 VARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGT 541 (590)
T ss_dssp EEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSC
T ss_pred EEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhc
Confidence 4568999874 6999999998333457789999999999999999999999999999999999999983
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.3e-06 Score=73.48 Aligned_cols=69 Identities=16% Similarity=0.359 Sum_probs=61.5
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+...+.||.+|++|++....|.++||
T Consensus 299 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (417)
T 2i4i_A 299 EGYACTSIHGDRSQRDREEALHQFR--SGKSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367 (417)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHH--HTSSC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTB
T ss_pred CCCCeeEecCCCCHHHHHHHHHHHH--cCCCC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCcc
Confidence 3677888999999999999999998 33444 466779999999999999999999999999999999998
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=97.74 E-value=1.9e-05 Score=70.77 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=59.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCCh------hhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP------QMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp------~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||.+|++|+| ....|.++||
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 363 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFR--EGKEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 363 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHH--TTSCS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTS
T ss_pred CCeEEEecCCCCHHHHHHHHHHHH--CCCCc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcc
Confidence 677889999999999999999998 34444 46778999999999999999999999987 4667999998
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.8e-05 Score=72.64 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+++++|. +.... +|+++.+.+.|+++...++||.+|++|++....|.++||
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~--~g~~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 382 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFK--KDESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 382 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHH--HCSSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred CCcEEEecCCCCHHHHHHHHHHhh--cCCCe-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhcccc
Confidence 667788999999999999999998 34445 456779999999999999999999999999999999998
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=97.62 E-value=4.2e-05 Score=71.91 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.++++.|. +.... +|+++.+.+.|+|+...++||.+|+++++....|.++||
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~--~g~~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 433 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFK--KDESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 433 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHH--HCSSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred CceEEEecCCCCHHHHHHHHHHHh--cCCCC-EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCcc
Confidence 667788999999999999999998 34445 556779999999999999999999999999999999998
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=6e-05 Score=69.40 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChh------hhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQ------MDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~------~~~Qa~~Ra 283 (288)
.++....++|+++..+|.++++.|. +.... +|+++.+.+.|+|+...+.||.+|++|++. ...|.++||
T Consensus 356 ~~~~v~~lh~~~~~~~R~~~~~~f~--~g~~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRa 430 (479)
T 3fmp_B 356 EGHQVALLSGEMMVEQRAAVIERFR--EGKEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 430 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCccEEEecCCCCHHHHHHHHHHHH--cCCCc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhccc
Confidence 4678889999999999999999998 44445 466779999999999999999999999874 566999998
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0044 Score=62.84 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=70.7
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
...|+|..+.+-.+......+.++||.+.....+..+...+.. .++.+..++|+.+..+|...++.+.. +...|+
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~~~Il 178 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHIL 178 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SCCSEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CCCCEE
Confidence 3479999977666665556788999999999999999888887 57899999999999888888888873 335566
Q ss_pred EEeccccccc---ccccccceeEEec
Q psy10684 131 MLSTRAGGLG---INLATADVVVLYD 153 (288)
Q Consensus 131 l~s~~~~~~G---lnl~~a~~vi~~d 153 (288)
+.++.....- +++...+.||+=|
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred EECHHHHHHHHHhhcccCcCEEEEeC
Confidence 6665443211 3344555555543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0011 Score=64.84 Aligned_cols=117 Identities=12% Similarity=0.139 Sum_probs=94.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----------------------------------------
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY---------------------------------------- 95 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~---------------------------------------- 95 (288)
...|+.++.+-+.+....+..|||+|.+.+.-+.|...|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 4578999998888888889999999999999999999998
Q ss_pred ------------------------------------hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 96 ------------------------------------WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 96 ------------------------------------~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
..||++-.++.... ++-.+++.+=- ..+. +-++|.-+||
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAqAG-~~Ga---VTIATNMAGR 579 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQAG-RSKT---VTIATNMAGR 579 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHTTT-STTC---EEEECSSTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHhcC-CCCe---EEEEecccCC
Confidence 67888888887753 22234555443 2222 4789999999
Q ss_pred ccccccc-------------------c-----------------------------------------------------
Q psy10684 140 GINLATA-------------------D----------------------------------------------------- 147 (288)
Q Consensus 140 Glnl~~a-------------------~----------------------------------------------------- 147 (288)
|-|+.-. .
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 9998743 1
Q ss_pred --eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 148 --VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 148 --~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|||--+.+-+...+.|.-||++|-|..|+.
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsS 691 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGS 691 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEE
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCe
Confidence 899999999999999999999999999874
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0005 Score=66.08 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=58.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC--------------CCChhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS--------------DWNPQMDLQ 278 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~--------------~wnp~~~~Q 278 (288)
++....++|+++.++|.++++.|+..+...+ +|+++.+.+.|+|+ .+++||+++. +++++.-.|
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~Q 421 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHH
Confidence 6778899999999999999999992124455 45677999999999 9999999998 777888889
Q ss_pred hhhhh
Q psy10684 279 AMVRT 283 (288)
Q Consensus 279 a~~Ra 283 (288)
.++||
T Consensus 422 R~GRA 426 (677)
T 3rc3_A 422 IAGRA 426 (677)
T ss_dssp HHTTB
T ss_pred HhcCC
Confidence 99998
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0097 Score=60.15 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=58.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCc----EEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGF----KYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~----~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
..|+|..+.+-++..+...+.++||.+.....+..+...+.. .++ .+..++|+.+..++.+..+.+. .
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~-~--- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR-N--- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG-G---
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhcc-C---
Confidence 368999777777777667788999999999987776666553 366 8899999999888877777776 2
Q ss_pred eeEEEEeccc
Q psy10684 127 IFIFMLSTRA 136 (288)
Q Consensus 127 ~~vll~s~~~ 136 (288)
+.|++.++..
T Consensus 156 ~~IlV~TP~~ 165 (1054)
T 1gku_B 156 FKIVITTTQF 165 (1054)
T ss_dssp CSEEEEEHHH
T ss_pred CCEEEEcHHH
Confidence 5566666543
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=66.84 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=57.9
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eCC----CCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YDS----DWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d~----~wnp~~~~Qa~~Ra 283 (288)
...++|++++.+|..+.+.|+ +..++| |+++.+.+.|+|+.+.+.||. ||. +|+|....|.++||
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~--~G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRA 481 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQ--EGFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA 481 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHH--TTCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTB
T ss_pred eeEECCCCCHHHHHHHHHHHh--cCCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhc
Confidence 567899999999999999998 455564 556699999999999999999 998 89999999999998
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00088 Score=64.36 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC-----CCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS-----DWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~-----~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++..+|.+++++|. ...+. +|+++...+.|+++...+.||++|. +|++..-.|.++||
T Consensus 462 ~gi~~~~lh~~~~~~~R~~~~~~f~--~g~~~-VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRa 535 (664)
T 1c4o_A 462 HGIRARYLHHELDAFKRQALIRDLR--LGHYD-CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 535 (664)
T ss_dssp TTCCEEEECTTCCHHHHHHHHHHHH--TTSCS-EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred cCCCceeecCCCCHHHHHHHHHHhh--cCCce-EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCcc
Confidence 4667778899999999999999998 44445 5567799999999999999999998 78999999999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=55.03 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE-EEeccccc
Q psy10684 61 VVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF-MLSTRAGG 138 (288)
Q Consensus 61 ~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl-l~s~~~~~ 138 (288)
..+.+.|..+. ..+.+++||+.+...++.+...+.. ++ +..+|.. .+|.++++.|+. . + .|+ .+.+...+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~-~-~il~~V~~~~~~ 441 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-G-K-YLVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-S-C-CEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-C-C-eEEEEEecCcee
Confidence 34555555543 3467999999999999999888764 33 4556654 578899999984 2 2 333 33789999
Q ss_pred ccccccc----cceeEEecCCCCcchhhhhhHHHH
Q psy10684 139 LGINLAT----ADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 139 ~Glnl~~----a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
+|+|+.+ ++.||++..|+.+.....-..|..
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~ 476 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIE 476 (540)
T ss_dssp ----------CEEEEEEESCCCCCTTSHHHHHHHH
T ss_pred cceecCCCcccccEEEEECCCCCCCCCHHHHHHHH
Confidence 9999996 899999999986664443334443
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=61.12 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=57.3
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC---CCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD---SDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d---~~wnp~~~~Qa~~Ra 283 (288)
.....++|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||. || .++++..-.|.++||
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~--~g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFR--RGNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHH--TTSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTB
T ss_pred cCeEEecCCCCHHHHHHHHHHHH--CCCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhc
Confidence 34677899999999999999998 445554 557799999999999999888 66 678999999999998
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.003 Score=61.05 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC-------CCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-------SDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d-------~~wnp~~~~Qa~~Ra 283 (288)
....++|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||. || .+++++.-.|.++||
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~--~g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFR--QRKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHH--TTCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred CEEEECCCCCHHHHHHHHHHHH--cCCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 4677899999999999999998 445555 557799999999999999998 88 789999999999998
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0016 Score=62.43 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=59.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC-----CCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS-----DWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~-----~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++..+|.+++++|. +..+. +|+++...+.|+++...+.||++|. ++++..-.|.++||
T Consensus 468 ~gi~~~~lh~~~~~~~R~~~l~~f~--~g~~~-VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 468 IGIKVNYLHSEIKTLERIEIIRDLR--LGKYD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp TTCCEEEECTTCCHHHHHHHHHHHH--HTSCS-EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHHh--cCCeE-EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 4677778899999999999999998 34444 5567789999999999999999998 78999999999998
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.14 Score=49.14 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=50.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE--------------------eCCCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL--------------------YDSDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~--------------------~d~~wn 272 (288)
++....++| ++|.+++++|. +....| |+++.+.+.|+|+. .++||. +|.+.+
T Consensus 434 g~~v~~lHg----~eR~~v~~~F~--~g~~~V-LVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s 505 (673)
T 2wv9_A 434 GKRVIQLNR----KSYDTEYPKCK--NGDWDF-VITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAIT 505 (673)
T ss_dssp TCCEEEECS----SSHHHHGGGGG--TCCCSE-EEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECC
T ss_pred CCeEEEeCh----HHHHHHHHHHH--CCCceE-EEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCC
Confidence 556677788 48999999998 445454 56779999999999 999987 456777
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 506 ~~~y~Qr~GRa 516 (673)
T 2wv9_A 506 SASAAQRRGRV 516 (673)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhhcc
Confidence 78888999997
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.073 Score=48.54 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=48.5
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE--------------------eCCCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL--------------------YDSDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~--------------------~d~~wn 272 (288)
++....++| ++|.+.++.|. +....| |+++...+.|+|+.. +.||. +|+|.+
T Consensus 214 g~~v~~lh~----~~R~~~~~~f~--~g~~~i-LVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 214 GKKVIQLNR----KSYDTEYPKCK--NGDWDF-VITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp TCCEEEEST----TCCCCCGGGSS--SCCCSE-EEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred CCcEEecCH----HHHHHHHhhcc--CCCceE-EEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 556666776 37888999997 444454 567799999999998 99987 779999
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 286 ~~~~~QR~GRa 296 (459)
T 2z83_A 286 SASAAQRRGRV 296 (459)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhcccc
Confidence 99999999998
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=60.38 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=56.7
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC----CCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD----SDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d----~~wnp~~~~Qa~~Ra 283 (288)
.+..++|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||. || .++++..-.|.++||
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~--~g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRa 369 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFR--KGIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRA 369 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHH--TTSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTB
T ss_pred CeeeecCCCCHHHHHHHHHHHH--CCCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhc
Confidence 4677899999999999999998 455555 557799999999999999887 76 578999999999998
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0058 Score=62.02 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=53.8
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhh--------hhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM--------DLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~--------~~Qa~~Ra 283 (288)
...++|++++.+|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||.++..|++.. ..|.++||
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~--~G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRA 579 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQ--EGFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA 579 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHH--HTCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHS
T ss_pred eeeecCCCCHHHHHHHHHHHh--CCCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhccc
Confidence 577899999999999999998 455555 556799999999999999999998888765 66999998
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.33 Score=43.76 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=49.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccce-----------------EEEeCCCCChhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV-----------------VVLYDSDWNPQM 275 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~-----------------v~~~d~~wnp~~ 275 (288)
++....++|+ +|++.+++|. +.... +|+++...+.|+|+. ..+ +|.++.+.++..
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~--~g~~~-vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~ 266 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCK--SEKWD-FVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPAS 266 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHH--HSCCS-EEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhc--CCCCe-EEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHH
Confidence 5566777876 6888999998 33444 456789999999998 555 566778889999
Q ss_pred hhhhhhhh
Q psy10684 276 DLQAMVRT 283 (288)
Q Consensus 276 ~~Qa~~Ra 283 (288)
-.|.++||
T Consensus 267 ~~Qr~GR~ 274 (431)
T 2v6i_A 267 AAQRRGRI 274 (431)
T ss_dssp HHHHHTTS
T ss_pred HHHhhhcc
Confidence 99999998
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.018 Score=56.15 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=58.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccC----CCCeeEEEEeecccccCCCccccceEEEeCC------------------
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNME----GSDIFIFMLSTRAGGLGINLATADVVVLYDS------------------ 269 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~----~~~~~v~l~s~~agg~glnl~~a~~v~~~d~------------------ 269 (288)
.++....++|+++.++|+++++.|. . +...+ +|+++...+.|+|+.+.+.||.++.
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~-~~~~~~g~~k-VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~ 414 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAP-ESHNGRPGRK-VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCC-CCSSSSCCEE-EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcc-cccCCCCceE-EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccc
Confidence 3566788999999999999999996 2 33444 5667799999999999999999666
Q ss_pred CCChhhhhhhhhhh
Q psy10684 270 DWNPQMDLQAMVRT 283 (288)
Q Consensus 270 ~wnp~~~~Qa~~Ra 283 (288)
|.+++.-.|.++||
T Consensus 415 p~S~~s~~QR~GRa 428 (773)
T 2xau_A 415 PISKASAQQRAGRA 428 (773)
T ss_dssp ECCHHHHHHHHHGG
T ss_pred cCCHHHHHhhcccc
Confidence 77788888999998
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=51.61 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=44.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE-------------------eCCCCCh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------------------YDSDWNP 273 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~-------------------~d~~wnp 273 (288)
++....++| ++|++.+++|. +..+. +|+++.+.+.|+|+. ++.||. +|.+.++
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~--~g~~~-vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~ 272 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIK--QKKPD-FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA 272 (440)
T ss_dssp TCCEEECCS----SSCC----------CCCS-EEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCH
T ss_pred CCCEEEecc----hhHHHHHhhhc--CCCce-EEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCH
Confidence 556677788 57899999998 44445 456779999999999 999985 7888899
Q ss_pred hhhhhhhhhh
Q psy10684 274 QMDLQAMVRT 283 (288)
Q Consensus 274 ~~~~Qa~~Ra 283 (288)
..-.|.++||
T Consensus 273 ~~~~Qr~GR~ 282 (440)
T 1yks_A 273 SSAAQRRGRI 282 (440)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhcccc
Confidence 9999999997
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.05 Score=54.60 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=52.8
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC---------Chhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW---------NPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w---------np~~~~Qa~~Ra 283 (288)
....++|++++.+|..+.+.|. ...++| |+++.+.+.|+|+.+ ..||+.+..+ +|....|.++||
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~--~G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRA 474 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFS--KGFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHH--TTCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGG
T ss_pred CeeeecCCCCHHHHHHHHHHHH--CCCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccc
Confidence 3567899999999999999998 455565 557799999999999 6666655543 788888999998
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.1 Score=47.51 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=49.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC--------------------CCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD--------------------SDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d--------------------~~wn 272 (288)
++....++|++ +++.++.|. +.... +|+++...+.|+|+.. +.||.+| ++.+
T Consensus 212 g~~~~~lh~~~----~~~~~~~f~--~g~~~-vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s 283 (451)
T 2jlq_A 212 GKRVIQLSRKT----FDTEYPKTK--LTDWD-FVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT 283 (451)
T ss_dssp TCCEEEECTTT----HHHHGGGGG--SSCCS-EEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred CCeEEECCHHH----HHHHHHhhc--cCCce-EEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCC
Confidence 45566667654 467889997 44444 4567799999999999 9999888 7788
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 284 ~~~y~Qr~GRa 294 (451)
T 2jlq_A 284 PASAAQRRGRI 294 (451)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhcccc
Confidence 88899999998
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=89.99 E-value=0.27 Score=47.98 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc--------ccceEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~--------~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..++|+....+|..+..+|+ .. . .++++..+|=|++.. +-.+||.+|.+-++-.+.|.++|
T Consensus 454 ~~gi~~~vLhg~~~~rEr~ii~~ag~--~g--~-VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GR 528 (844)
T 1tf5_A 454 NKGIPHQVLNAKNHEREAQIIEEAGQ--KG--A-VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGR 528 (844)
T ss_dssp TTTCCCEEECSSCHHHHHHHHTTTTS--TT--C-EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTT
T ss_pred HCCCCEEEeeCCccHHHHHHHHHcCC--CC--e-EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCc
Confidence 45888999999987777765555554 22 3 466779999999998 78899999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 529 T 529 (844)
T 1tf5_A 529 S 529 (844)
T ss_dssp S
T ss_pred c
Confidence 8
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=89.13 E-value=1.4 Score=41.76 Aligned_cols=91 Identities=8% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec--cccc
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST--RAGG 138 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~--~~~~ 138 (288)
.+.+.|..+. ..+..++||..+-..++.+...+.. +..- ...+++..+|..++++|+ ..+ .| |+++ ..-+
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~--~v-L~~v~~gsf~ 507 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDH--GT-IFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSC--CE-EEEETTSCC-
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCC--cE-EEEEecCcee
Confidence 3444444433 3356788888888888888887762 2222 444455678999999998 333 33 5554 5899
Q ss_pred cccccc--ccceeEEecCCCCcc
Q psy10684 139 LGINLA--TADVVVLYDSDWNPQ 159 (288)
Q Consensus 139 ~Glnl~--~a~~vi~~d~~wnp~ 159 (288)
+|+|+. ....||+...|+-+.
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~ 530 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRP 530 (620)
T ss_dssp -------CCCCEEEESSCCCCCC
T ss_pred ccccCCCCceEEEEEEcCCCCCC
Confidence 999999 578999999887543
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=0.56 Score=45.25 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=52.1
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc--------ccceEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~--------~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..+.|+....+|.....+|+ .. . .++++..+|=|++.. +-.+||.++++-++-.+.|.++|
T Consensus 496 ~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g--~-VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGR 570 (822)
T 3jux_A 496 KKGIPHQVLNAKYHEKEAEIVAKAGQ--KG--M-VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGR 570 (822)
T ss_dssp TTTCCCEEECSCHHHHHHHHHHHHHS--TT--C-EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTT
T ss_pred HCCCCEEEeeCCchHHHHHHHHhCCC--CC--e-EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCc
Confidence 34788888999865444444444554 22 2 566778899999887 67799999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 571 T 571 (822)
T 3jux_A 571 A 571 (822)
T ss_dssp S
T ss_pred c
Confidence 7
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=86.68 E-value=0.3 Score=46.29 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=46.7
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceE--------------------EEeCCCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV--------------------VLYDSDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v--------------------~~~d~~wn 272 (288)
++....++| ++|.+.+++|. +.... +|+++.+.+.|+|+. .++| +.+|++-+
T Consensus 379 g~~v~~lhg----~~R~~~l~~F~--~g~~~-VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s 450 (618)
T 2whx_A 379 GKRVIQLSR----KTFDTEYPKTK--LTDWD-FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVT 450 (618)
T ss_dssp TCCEEEECT----TTHHHHTTHHH--HSCCS-EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred CCcEEEECh----HHHHHHHHhhc--CCCcE-EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCC
Confidence 556666776 47888999997 33444 456779999999995 8888 44555556
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 451 ~~~yiQR~GRa 461 (618)
T 2whx_A 451 PASAAQRRGRI 461 (618)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhcccc
Confidence 66677999997
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=0.63 Score=45.43 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=55.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc-----------------------------
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA----------------------------- 261 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a----------------------------- 261 (288)
..|+.+..+.|+....+|..+..+|+ . . . .++++..+|=|++....
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr-~-G--~-VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGY-P-A--A-VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTS-T-T--C-EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCC-C-C--e-EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 45899999999987666766667776 2 2 3 55677888899888753
Q ss_pred --------ceEEEeCCCCChhhhhhhhhhh
Q psy10684 262 --------DVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 262 --------~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+||.+|.+-++-.+.|.++|+
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRT 567 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRS 567 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTS
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhcccc
Confidence 6999999999999999999998
|
| >2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene} | Back alignment and structure |
|---|
Probab=83.73 E-value=4.9 Score=28.46 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=41.9
Q ss_pred EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 77 VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 77 viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++||+-+..+..+....+..|+..+.+.+....+.|.+.++.|.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefe 49 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFE 49 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999997
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 288 | ||||
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 6e-21 | |
| d1ofcx2 | 128 | a.4.1.13 (X:851-978) SLIDE domain of the nucleosom | 2e-19 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 3e-11 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 5e-05 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-07 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 88.8 bits (219), Expect = 6e-21
Identities = 67/192 (34%), Positives = 95/192 (49%), Gaps = 17/192 (8%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLF-----------DGAEPGPP--YT 48
L + V + + + + L+K NHP L DGA P Y+
Sbjct: 32 FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS 91
Query: 49 TDEHLVFNSGKMVVLDKLLPKLKAQES-RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107
T SGKM+VLD +L + S +V++ S T+ LD+ E C R + Y RLDG
Sbjct: 92 TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 151
Query: 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 167
+ + R + + FN S FIFMLS++AGG G+NL A+ +V++D DWNP D QAM R
Sbjct: 152 MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 211
Query: 168 EAKILRRGSIKK 179
+ R G K
Sbjct: 212 ---VWRDGQKKT 220
|
| >d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: SLIDE domain domain: SLIDE domain of the nucleosome remodeling ATPase ISWI species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 79.8 bits (197), Expect = 2e-19
Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEEEDRYLYCRL-----DGQ 222
E KI RR SIKKAL+ KMSRYRAPFHQLR+ YG NKGKNYTE EDR+L C L D +
Sbjct: 13 EGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKE 72
Query: 223 TAHEDRQRQINDFNMEGSDIFI 244
+E+ + I D FI
Sbjct: 73 NVYEELRAAIRASPQFRFDWFI 94
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 60.3 bits (145), Expect = 3e-11
Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 59 KMVVLDKLLPKL--KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQ 116
KM L +++ + + Q S++++F+ + + G K R GQ + E+ +
Sbjct: 144 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 203
Query: 117 INDFNMEGSDIFI-----FMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 167
D F +++T G G+++ D+VV Y+ + +Q R
Sbjct: 204 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGR 259
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 41.8 bits (97), Expect = 5e-05
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFI-----FMLSTRAGGLGINLATADVV 264
+D R GQ + E+ + D F +++T G G+++ D+V
Sbjct: 182 VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLV 241
Query: 265 VLYDSDWNPQMDLQAMVRT 283
V Y+ + +Q RT
Sbjct: 242 VFYEPVPSAIRSIQRRGRT 260
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.4 bits (114), Expect = 2e-07
Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 17/179 (9%)
Query: 3 LMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFN-SGKMV 61
K A + R ++ + E + + FN K+
Sbjct: 26 REKVYKQFLRARGITLRRAEDFNKIVMASGYDE---RAYEALRAWEEARRIAFNSKNKIR 82
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
L ++L + + + +++IF++ ++ + F + +T+ E+R+ + F
Sbjct: 83 KLREILERHR--KDKIIIFTRHNELVY-----RISKVFLIPAITHRTSREEREEILEGFR 135
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKA 180
F ++S++ GI++ A+V V+ + + +Q + R ILR KK
Sbjct: 136 T---GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR---ILRPSKGKKE 188
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.89 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.88 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.88 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.86 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.86 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.83 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.81 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.8 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.79 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.77 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.76 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.74 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.68 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.53 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.46 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.34 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.32 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.19 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.15 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.89 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.79 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.75 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.74 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.68 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.63 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.6 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.57 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.53 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.33 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.2 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.2 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.11 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 97.86 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 97.8 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.45 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.31 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.31 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 94.9 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 93.81 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.8 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.55 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.02 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.79 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=5.9e-37 Score=270.85 Aligned_cols=180 Identities=34% Similarity=0.505 Sum_probs=150.5
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCCCC-------CC------CCCCCCCccccccCchHHHHHHHHHHHH-hCCCeEEEEe
Q psy10684 16 LEKMRLQNILMQLRKCSNHPYLFDGA-------EP------GPPYTTDEHLVFNSGKMVVLDKLLPKLK-AQESRVLIFS 81 (288)
Q Consensus 16 ~~~~~~~~~l~~Lrq~~~hP~l~~~~-------~~------~~~~~~~~~~~~~s~K~~~l~~ll~~~~-~~~~kviIFs 81 (288)
....++|+.|++|||+||||.|+... .. .............|+|+..|.++|..+. ..++|+||||
T Consensus 46 ~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs 125 (346)
T d1z3ix1 46 KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVS 125 (346)
T ss_dssp CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CchHHHHHHHHHHHHHhCCHHHhhhhhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEe
Confidence 34567999999999999999986321 00 0111122233456999999999998764 5689999999
Q ss_pred cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchh
Q psy10684 82 QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMD 161 (288)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~ 161 (288)
+|+.+++.|+..|...|+++++++|+++..+|+++++.|+.+.....|||+++++|+.||||+.|++||+||++|||+.+
T Consensus 126 ~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~ 205 (346)
T d1z3ix1 126 NYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 205 (346)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHH
T ss_pred ehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchH
Confidence 99999999999999999999999999999999999999996666667999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 162 LQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 162 ~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
.||+||+||+||+++| +++|++++.+++..+..+
T Consensus 206 ~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l 246 (346)
T d1z3ix1 206 EQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 246 (346)
T ss_dssp HHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred hHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987 477777776665544433
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=6.7e-36 Score=253.01 Aligned_cols=169 Identities=27% Similarity=0.417 Sum_probs=135.0
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh
Q psy10684 16 LEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY 95 (288)
Q Consensus 16 ~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~ 95 (288)
.....+|+.|++|||+|+||.|+.+.+. ....|+|+.++.+++.++...++|+||||+|..+++.++..+.
T Consensus 36 ~~~~~iL~~l~~Lrqic~hP~l~~~~~~---------~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~ 106 (244)
T d1z5za1 36 KRKGMILSTLLKLKQIVDHPALLKGGEQ---------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIE 106 (244)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSCC---------CSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhcCCcccccccc---------chhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHH
Confidence 4556789999999999999999876432 2346899999999999988899999999999999999999997
Q ss_pred hc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 96 WR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 96 ~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.. ++++..++|+++.++|++++++|+ .++++.|+++++.+||.|+||+.|++||++|++|||..+.||+||+||+||+
T Consensus 107 ~~~~~~~~~i~G~~~~~~R~~~i~~F~-~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~ 185 (244)
T d1z5za1 107 KELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 185 (244)
T ss_dssp HHHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred hhccceEEEEecccchhccchhhhhhh-ccccchhccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCC
Confidence 65 899999999999999999999998 5667889999999999999999999999999999999999999999999999
Q ss_pred cch-------HHHHHHHhhhhccccch
Q psy10684 175 GSI-------KKALEAKMSRYRAPFHQ 194 (288)
Q Consensus 175 ~~v-------~~~i~~~~~~~~~~~~~ 194 (288)
++| ++++++++.+....+..
T Consensus 186 ~~v~i~~l~~~~Tiee~i~~~~~~K~~ 212 (244)
T d1z5za1 186 RNVIVHKLISVGTLEEKIDQLLAFKRS 212 (244)
T ss_dssp -CCEEEEEEETTSHHHHHHHHHHHCHH
T ss_pred CceEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 876 46677776665554444
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.9e-23 Score=164.71 Aligned_cols=117 Identities=19% Similarity=0.271 Sum_probs=102.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..|.++++.. ...|+||||++...++.+...|...++++..+||+++.++|.++++.|+.+. .++ |++|+
T Consensus 11 ~e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~--~~i-Lv~Td 85 (162)
T d1fuka_ 11 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRI-LISTD 85 (162)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSE-EEEEG
T ss_pred cHHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcc--cce-eeccc
Confidence 456999999999863 4679999999999999999999999999999999999999999999998444 344 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+||+|..|.||+||++|.|+.+.+
T Consensus 86 v~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~ 127 (162)
T d1fuka_ 86 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 127 (162)
T ss_dssp GGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE
T ss_pred cccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEE
Confidence 999999999999999999999999999999999999998865
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=2.1e-23 Score=166.09 Aligned_cols=117 Identities=17% Similarity=0.286 Sum_probs=107.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..|.++|+. ..++|+||||++..+++.+...|...|+.+..+||+++.++|.+++..|+.+ ...+ |++|+
T Consensus 16 ~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~--~~~i-lv~Td 90 (171)
T d1s2ma2 16 ERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG--KVRT-LVCSD 90 (171)
T ss_dssp GGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT--SSSE-EEESS
T ss_pred HHHHHHHHHHHHHh--CCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC--cccc-ccchh
Confidence 46799999999986 3568999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+||||..|.||+||++|.|+.+.+
T Consensus 91 ~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~ 132 (171)
T d1s2ma2 91 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 132 (171)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEE
T ss_pred HhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEE
Confidence 999999999999999999999999999999999999999875
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=8.8e-23 Score=161.90 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=108.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.++.|+..|.++|+.. ...|+||||++...++.|...|...|+++..+||+++.++|...++.|++ +.+.+ |++|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~--g~~~i-Lv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--FQRRI-LVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcc--cccee-eecc
Confidence 3578999999999874 46799999999999999999999999999999999999999999999984 44455 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+||||..|.|++||++|.|+++.+
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~ 127 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 127 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEE
Confidence 9999999999999999999999999999999999999998765
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.6e-22 Score=159.06 Aligned_cols=116 Identities=19% Similarity=0.332 Sum_probs=106.8
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..|.++++. ..+.|+||||++...++.+...|...|+++..+||+++.++|.++++.|+.+..+ + |++|++
T Consensus 19 ~~K~~~L~~ll~~--~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~--i-Lv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR--V-LISTDV 93 (168)
T ss_dssp THHHHHHHHHHHH--HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC--E-EEECGG
T ss_pred HHHHHHHHHHHHh--CCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc--E-Eeccch
Confidence 4599999999976 3567999999999999999999999999999999999999999999999844444 3 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+|++.+++||+||+||++..|.||+||++|.|+.+.+
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~ 134 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA 134 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEE
Confidence 99999999999999999999999999999999999998875
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=1.7e-22 Score=158.24 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=105.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.+|.++|+ ..+.|+||||++.+.++.+...|...|+++..+||.++..+|..+++.|+.+ +..+ |++|+
T Consensus 13 ~~~K~~~L~~ll~---~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~--~~~i-lv~T~ 86 (155)
T d1hv8a2 13 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK--KIRI-LIATD 86 (155)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT--SSSE-EEECT
T ss_pred hHHHHHHHHHHHc---cCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcc--ccee-eeehh
Confidence 4679999888875 3467999999999999999999999999999999999999999999999844 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+||||..|.|++||++|.|+.+.+
T Consensus 87 ~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~ 128 (155)
T d1hv8a2 87 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA 128 (155)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE
T ss_pred HHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceE
Confidence 999999999999999999999999999999999999998875
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.4e-20 Score=151.58 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=107.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
....|+..|.++|+. ..+.++||||++...++.|...|...|+.+..+||+++.++|.++++.|+. +.+.+ |++|
T Consensus 13 ~~~~k~~~L~~~l~~--~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~i-lvaT 87 (200)
T d1oywa3 13 EKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR--DDLQI-VVAT 87 (200)
T ss_dssp ECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEEC
T ss_pred cCCcHHHHHHHHHHh--cCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhc--ccceE-EEec
Confidence 345688988888875 446799999999999999999999999999999999999999999999984 44444 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+|+|+..|.|++||++|.|+.+..
T Consensus 88 d~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~a 130 (200)
T d1oywa3 88 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 130 (200)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred chhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceE
Confidence 9999999999999999999999999999999999999998765
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=1.4e-20 Score=161.78 Aligned_cols=114 Identities=18% Similarity=0.341 Sum_probs=99.1
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC--------CCHHHHHHHHHhhcCCCC
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ--------TAHEDRQRQINDFNMEGS 125 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~--------~~~~~R~~~i~~F~~~~~ 125 (288)
.++|+..|.++|.++. ..+.|+||||++.+.++.++..|...++++..++|. ++..+|..+++.|++ +
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~--g 218 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--G 218 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH--T
T ss_pred CCcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHc--C
Confidence 4789999999998753 446799999999999999999999999999999885 555689999999984 3
Q ss_pred CeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 126 DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 126 ~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
.++| |++|+++++|+|++.|++||+||+||||..+.|++||++|.+
T Consensus 219 ~~~v-Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~ 264 (286)
T d1wp9a2 219 EFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM 264 (286)
T ss_dssp SCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC
T ss_pred CCcE-EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC
Confidence 4555 889999999999999999999999999999999999888854
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.5e-20 Score=153.11 Aligned_cols=110 Identities=15% Similarity=0.276 Sum_probs=97.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.++|+..|.++++. ..++|+||||++...++.|.+.|.. ..+||+++.++|+++++.|++ +.++| |++++
T Consensus 77 ~~~K~~~l~~ll~~--~~~~k~lvf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~R~~~l~~F~~--~~~~v-Lv~~~ 146 (200)
T d2fwra1 77 SKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFLI-----PAITHRTSREEREEILEGFRT--GRFRA-IVSSQ 146 (200)
T ss_dssp CSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTTC-----CBCCSSSCSHHHHTHHHHHHH--SSCSB-CBCSS
T ss_pred cHHHHHHHHHHHHh--CCCCcEEEEeCcHHHHHHHHhhcCc-----ceeeCCCCHHHHHHHHHHhhc--CCeee-eeecc
Confidence 57899999999986 4568999999999999999888743 357999999999999999984 35555 67999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++++|+|++.+++||+++++|||..+.|++||++|.||.+
T Consensus 147 ~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k 186 (200)
T d2fwra1 147 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186 (200)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred hhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999865
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.77 E-value=5.3e-19 Score=140.99 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
.+++.-|+..+.+..+.+.++||||+.....+.+...|...|+++..+||++++++|.+++++|++ +.+.| |++|++
T Consensus 14 ~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~--g~~~v-LVaTdv 90 (181)
T d1t5la2 14 KGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL--GKYDV-LVGINL 90 (181)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHH--TSCSE-EEESCC
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHC--CCCCE-EEehhH
Confidence 345555555565555678899999999999999999999999999999999999999999999984 44445 899999
Q ss_pred ccccccccccceeEEecCCC-----CcchhhhhhHHHHHHhhh
Q psy10684 137 GGLGINLATADVVVLYDSDW-----NPQMDLQAMVREAKILRR 174 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~w-----np~~~~Qa~~R~~R~Gq~ 174 (288)
+++|+|++.+++||+||+|- ++..|.||+||++|.|..
T Consensus 91 ~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 91 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp CSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred HHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 99999999999999999995 445555666666665543
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.76 E-value=4.2e-20 Score=162.21 Aligned_cols=94 Identities=39% Similarity=0.676 Sum_probs=82.6
Q ss_pred cccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE
Q psy10684 190 APFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 266 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~ 266 (288)
...+++++++......+..++ ..|+.+++++|+++.++|++++++|+..+....|+|+|++|||+||||++||+||+
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~ 195 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 195 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred hcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEE
Confidence 456788888877766665554 56899999999999999999999999344556799999999999999999999999
Q ss_pred eCCCCChhhhhhhhhhh
Q psy10684 267 YDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 267 ~d~~wnp~~~~Qa~~Ra 283 (288)
+||||||+.+.||++|+
T Consensus 196 ~d~~wnp~~~~Qa~~R~ 212 (346)
T d1z3ix1 196 FDPDWNPANDEQAMARV 212 (346)
T ss_dssp CSCCSSHHHHHHHHTTS
T ss_pred ecCCCccchHhHhhhcc
Confidence 99999999999999999
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=5.8e-18 Score=133.14 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=93.2
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccc
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN 142 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gln 142 (288)
|++.+.+....++++||||.....++.|...|..+|+++..+||++++.+|.+++++|.. +++.| |++|+++++|+|
T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~--G~~~v-LVaT~v~~~GiD 96 (174)
T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDC-LVGINLLREGLD 96 (174)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSE-EEESCCCCTTCC
T ss_pred HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHC--CCeEE-EEeeeeeeeecc
Confidence 444455445678999999999999999999999999999999999999999999999984 45555 999999999999
Q ss_pred ccccceeEEecCCC-----CcchhhhhhHHHHHHhh
Q psy10684 143 LATADVVVLYDSDW-----NPQMDLQAMVREAKILR 173 (288)
Q Consensus 143 l~~a~~vi~~d~~w-----np~~~~Qa~~R~~R~Gq 173 (288)
++++++||+||++- ++..|.|++||++|-|.
T Consensus 97 ip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~ 132 (174)
T d1c4oa2 97 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 132 (174)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred CCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC
Confidence 99999999999865 33557888888888664
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.68 E-value=2.3e-18 Score=144.36 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=78.0
Q ss_pred HHhhhhccccchhhhhhccCCCccccc----ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc
Q psy10684 183 AKMSRYRAPFHQLRIAYGANKGKNYTE----EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 258 (288)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl 258 (288)
+.+.+.....++++++.......+..+ ...++.+.+++|+++.++|++++++|+ .++++.++++|+++||+||||
T Consensus 76 ~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~-~~~~~~vll~~~~~~g~Glnl 154 (244)
T d1z5za1 76 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINL 154 (244)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEEECCTTCCCCCC
T ss_pred HHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhh-ccccchhcccccccccccccc
Confidence 344444456677888777666555443 234788899999999999999999999 788889999999999999999
Q ss_pred cccceEEEeCCCCChhhhhhhhhhh
Q psy10684 259 ATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 259 ~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.|++||++||+|||..+.||++|+
T Consensus 155 ~~a~~vi~~~~~wn~~~~~Qa~~R~ 179 (244)
T d1z5za1 155 TSANRVIHFDRWWNPAVEDQATDRV 179 (244)
T ss_dssp TTCSEEEECSCCSCTTTC-------
T ss_pred chhhhhhhcCchhhhHHHhhhccee
Confidence 9999999999999999999999998
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.53 E-value=3.8e-16 Score=118.73 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=80.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.|+||||++...++.|...|...|+++..+||+++.++ |+ .....+ |++|+++++|+| ...+.||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~--~~~~~v-lvaTd~~~~GiD-~~v~~Vi~ 101 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IP--TNGDVV-VVATDALMTGFT-GDFDSVID 101 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CT--TSSCEE-EEESSSSCSSSC-CCBSEEEE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hh--hhhcce-eehhHHHHhccc-cccceEEE
Confidence 35679999999999999999999999999999999998554 55 234444 899999999999 88999988
Q ss_pred ec----CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 152 YD----SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 152 ~d----~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++ +|+++..|.|++||++| |+++.
T Consensus 102 ~~~~~~~P~~~~~y~qr~GR~gR-g~~G~ 129 (138)
T d1jr6a_ 102 CNTSDGKPQDAVSRTQRRGRTGR-GKPGI 129 (138)
T ss_dssp CSEETTEECCHHHHHHHHTTBCS-SSCEE
T ss_pred EEecCCCCCCHHHHHhHhccccC-CCCcE
Confidence 65 68899999999999999 98875
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=1.3e-15 Score=127.52 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=85.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec-
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST- 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~- 134 (288)
...|+..|.++|+. .+.++||||++...++.|...|... +||++++++|.+++++|+. +.+.| |++|
T Consensus 10 ~~~~~~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~--g~~~v-LVaT~ 77 (248)
T d1gkub2 10 NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVE--GEIDH-LIGTA 77 (248)
T ss_dssp SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHH--TSCSE-EEEEC
T ss_pred CchHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHh--CCCeE-EEEec
Confidence 45578888888864 3678999999999999999999753 7999999999999999984 45556 5566
Q ss_pred ---ccccccccccc-cceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 ---RAGGLGINLAT-ADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ---~~~~~Glnl~~-a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|||++. +++||+||+|| +.|++||++|.|+.+..
T Consensus 78 a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~ 120 (248)
T d1gkub2 78 HYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVK 120 (248)
T ss_dssp C------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHH
T ss_pred cccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEe
Confidence 77999999985 99999999998 45889999999887643
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.34 E-value=1.5e-13 Score=115.11 Aligned_cols=100 Identities=12% Similarity=-0.014 Sum_probs=83.4
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHH----------HHHHHhhcCCCCCeeEEEEecccccc---
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDR----------QRQINDFNMEGSDIFIFMLSTRAGGL--- 139 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R----------~~~i~~F~~~~~~~~vll~s~~~~~~--- 139 (288)
+++|+||||+++..++.|...|...|++...+||+++++.| .+.++.|.. ++..+ ++.+++..+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~--G~~dv-VVaT~~~a~g~~ 111 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFT--GDFDS-VIDCNTCVTQTV 111 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CC--CCBSE-EEECCEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhc--CCCcE-EEEEeehhccCC
Confidence 36799999999999999999999999999999999999877 457778873 44555 567777665
Q ss_pred cccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 140 GINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
|+|+....+||+++.|.|+..+.||+||++| |+.+.
T Consensus 112 giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~ 147 (299)
T d1a1va2 112 DFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGI 147 (299)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCce
Confidence 7788888899999999999999999999999 87764
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.32 E-value=5.9e-13 Score=107.50 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=85.8
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------------------cEEEEeeCCCCHHH
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------------------FKYCRLDGQTAHED 112 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------------------~~~~~~~G~~~~~~ 112 (288)
+.+++.+...++.++||||+++..++.++..|.... ...+.+||++++++
T Consensus 29 ~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~ 108 (201)
T d2p6ra4 29 FEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 108 (201)
T ss_dssp HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhh
Confidence 344556666678899999999887776665554310 11467899999999
Q ss_pred HHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE-------ecCCCCcchhhhhhHHHHHHhhh
Q psy10684 113 RQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------YDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 113 R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~-------~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
|..+.+.|+ .+.++| |++|++.+.|+|++..+.||. ++.+.++..+.|++||+||.|..
T Consensus 109 r~~ie~~f~--~g~i~v-lvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~ 174 (201)
T d2p6ra4 109 RRVVEDAFR--RGNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 174 (201)
T ss_dssp HHHHHHHHH--TTSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHHHHHh--CCCceE-EEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCC
Confidence 999999998 355666 899999999999997777775 56678899999999999999964
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1.6e-12 Score=104.67 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=90.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHH--------HHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCC
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDIL--------EDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNME 123 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l--------~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~ 123 (288)
.+..|...+.+.+++...++.++-+.|+..+..+.+ ...|.+. ++++..+||+|++++|++++.+|.++
T Consensus 10 v~~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g 89 (206)
T d1gm5a4 10 VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG 89 (206)
T ss_dssp CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT
T ss_pred ECcccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCC
Confidence 345678888888887777788887777655433322 2233222 56677899999999999999999844
Q ss_pred CCCeeEEEEecccccccccccccceeEEecCC-CCcchhhhhhHHHHHHhhhcch
Q psy10684 124 GSDIFIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 124 ~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~-wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++.| |++|.+..+|+|+++|+++|+++++ +..+.+.|..||++|.|+++..
T Consensus 90 --~~~i-LVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~ 141 (206)
T d1gm5a4 90 --RYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 141 (206)
T ss_dssp --SSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred --CEEE-EEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeecccccee
Confidence 4444 9999999999999999999999988 4678888999999999988753
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.15 E-value=5.7e-12 Score=101.54 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=61.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+....++|+++.++|++++++|+ ++++.| |+++.++|.|+|++.|+.||++|++|||....|+++|+
T Consensus 112 ~l~~~~i~g~~~~~~R~~~l~~F~--~~~~~v-Lv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~ 179 (200)
T d2fwra1 112 VFLIPAITHRTSREEREEILEGFR--TGRFRA-IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 179 (200)
T ss_dssp HTTCCBCCSSSCSHHHHTHHHHHH--HSSCSB-CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHS
T ss_pred hcCcceeeCCCCHHHHHHHHHHhh--cCCeee-eeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhc
Confidence 456677899999999999999998 345666 55889999999999999999999999999999999998
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=2.2e-09 Score=85.63 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=96.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
...+. .+.+.++.-..++.+|-+.|+..+..+.+...+... ++++..+||.|+.+++++++..|.+ +++.| |++
T Consensus 14 ~~~~~-~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~--g~~~I-Lv~ 89 (211)
T d2eyqa5 14 EYDSM-VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNV-LVC 89 (211)
T ss_dssp ECCHH-HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCE-EEE
T ss_pred CCCHH-HHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHc--CCcce-EEE
Confidence 34444 455666665678899999999998888888887764 7889999999999999999999984 44444 899
Q ss_pred cccccccccccccceeEEecCC-CCcchhhhhhHHHHHHhhhc
Q psy10684 134 TRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~-wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
|.+-..|+|+++|+.+|..+.+ +-.+...|--||++|-+.++
T Consensus 90 TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s 132 (211)
T d2eyqa5 90 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 132 (211)
T ss_dssp SSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE
T ss_pred ehhhhhccCCCCCcEEEEecchhccccccccccceeeecCccc
Confidence 9999999999999999999887 57778889999999988654
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.7e-09 Score=84.29 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=62.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++.++|.+.+++|+ ++++.+ |+++.+++.|+|++.+++||++|++|||....|.++||
T Consensus 50 ~~~~~~~ihg~~~~~~r~~~l~~F~--~g~~~i-Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~ 118 (168)
T d1t5ia_ 50 QNFPAIAIHRGMPQEERLSRYQQFK--DFQRRI-LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 118 (168)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhhhhc--ccccee-eeccccccchhhcccchhhhhhhcccchhhHhhhhhhc
Confidence 3567778999999999999999998 555565 56889999999999999999999999999999999998
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=2e-08 Score=77.50 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|++++.+.+.+....+..|||++.+.+..+.+...|...++++..++.... +++.-+-... ..++ .+.++|.
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~--~~Ea~II~~A-g~~g--~VtIATN 90 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH--EREAQIIEEA-GQKG--AVTIATN 90 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH--HHHHHHHTTT-TSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH--HHHHHHHHhc-cCCC--ceeehhh
Confidence 356999999999998889999999999999999999999999999999998764 3333333333 2233 2488999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
.+|+|.|+. +.=|||.-+.+-+...+.|..||++|.|..|+..
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~ 141 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 141 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred HHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccE
Confidence 999997654 4458899999999999999999999999999863
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=1.1e-09 Score=92.69 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=55.0
Q ss_pred hhhhcccCC--------CccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDG--------QTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G--------~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++.+..++| .++..+|++.++.|+ +.++.| |+++.++|.|+|++.|++||+||++|||....|+++|+
T Consensus 185 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~--~g~~~v-Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~ 260 (286)
T d1wp9a2 185 GIKAKRFVGQASKENDRGLSQREQKLILDEFA--RGEFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 260 (286)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHH--HTSCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTS
T ss_pred CCceEEeeccccccccchhchHHHHHHHHHHH--cCCCcE-EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhC
Confidence 455555555 566678999999998 344555 67889999999999999999999999999999999997
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.68 E-value=3.7e-09 Score=81.15 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=60.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++..+|...+++|. .++.. +|+++.+++.|+|+..+++||.+|+||||....|.++|+
T Consensus 52 g~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~ 119 (155)
T d1hv8a2 52 GFKAGAIHGDLSQSQREKVIRLFK--QKKIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 119 (155)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHH--TTSSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTT
T ss_pred ccccccccccchhhhhhhhhhhhh--cccce-eeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhc
Confidence 566778999999999999999998 44444 456779999999999999999999999999999999998
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=98.63 E-value=1.2e-08 Score=86.44 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=76.4
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
...+.+++||++....++.+...|...++.+..+||++..+.| ..|.. +..++ +++|++...|+|+ .+.+||
T Consensus 175 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~--~~~~~-lvaT~~~~~G~~~-~~~~Vi 246 (305)
T d2bmfa2 175 TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRT--NDWDF-VVTTDISEMGANF-KAERVI 246 (305)
T ss_dssp HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGT--SCCSE-EEECGGGGTTCCC-CCSEEE
T ss_pred HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhc--cchhh-hhhhHHHHhcCCC-CccEEE
Confidence 4567899999999999999999999999999999999865443 45652 33333 8899999999998 455554
Q ss_pred ----------EecC----------CCCcchhhhhhHHHHHHhhhcc
Q psy10684 151 ----------LYDS----------DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 151 ----------~~d~----------~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++|+ |-+++.+.|++||++|.|+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~ 292 (305)
T d2bmfa2 247 DPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292 (305)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCC
T ss_pred EcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCce
Confidence 3343 3456788999999999987654
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=1.2e-08 Score=79.49 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=61.2
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++..+|.+.+.+|. +.... +|+++.+++-|+++..+++||.||+||||....|.++|+
T Consensus 55 ~g~~~~~~h~~~~~~~r~~~~~~f~--~~~~~-ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~ 123 (171)
T d1s2ma2 55 LGYSCYYSHARMKQQERNKVFHEFR--QGKVR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 123 (171)
T ss_dssp HTCCEEEECTTSCHHHHHHHHHHHH--TTSSS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBS
T ss_pred ccccccccccccchhhhhhhhhhcc--cCccc-cccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhc
Confidence 3677788999999999999999998 44444 455678999999999999999999999999999999998
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=2.3e-08 Score=77.10 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=61.8
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.++++.|. ..+.. +|+++.+++-|+|+..+++||.||+||||....|.++|+
T Consensus 50 ~~~~~~~~~~~~~~~~r~~~l~~f~--~~~~~-iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~ 118 (162)
T d1fuka_ 50 DKFTVSAIYSDLPQQERDTIMKEFR--SGSSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 118 (162)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHH--TTSCS-EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSC
T ss_pred cCceEEEeccCCchhhHHHHHHHHh--hcccc-eeeccccccccccCCCceEEEEeccchhHHHHHhhcccc
Confidence 4677788999999999999999998 44444 467889999999999999999999999999999999998
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.53 E-value=3e-08 Score=83.72 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=68.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
+.+.+++||+.....++.++..|...|++++.+||.+..+++++ |+++.. + +|++|+++..|+|+ .+.+||.
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~~--~-~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKP--D-FILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCC--S-EEEESSSTTCCTTC-CCSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCCc--C-EEEEechhhhceec-CceEEEe
Confidence 34679999999999999999999999999999999998877664 442333 3 38999999999999 6999985
Q ss_pred ecC-------------------CCCcchhhhhhHHHHHHh
Q psy10684 152 YDS-------------------DWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 152 ~d~-------------------~wnp~~~~Qa~~R~~R~G 172 (288)
... |.+.+.-.|+.||+||.+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~ 145 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 145 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC
Confidence 432 123344468888888864
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.3e-07 Score=73.18 Aligned_cols=69 Identities=14% Similarity=0.361 Sum_probs=61.1
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+..|. +.... +|+++.+.+-|+++..+++||.||+||+|....|.++|+
T Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~fk--~g~~~-iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~ 125 (168)
T d2j0sa2 57 ANFTVSSMHGDMPQKERESIMKEFR--SGASR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 125 (168)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHH--HTSSC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTS
T ss_pred cccchhhhhhhhhHHHHHHHHHHHh--cCCcc-EEeccchhcccccccCcceEEEecCCcCHHHHHhhhccc
Confidence 3566788999999999999999998 44444 466779999999999999999999999999999999998
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=5.2e-07 Score=71.72 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=61.8
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.++.|. +..+.+ |+++.+.|.|+++...++||.+|++|||...-|.++||
T Consensus 53 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~i-lvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~ 121 (200)
T d1oywa3 53 KGISAAAYHAGLENNVRADVQEKFQ--RDDLQI-VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 121 (200)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTS
T ss_pred CCceeEEecCCCcHHHHHHHHHHHh--cccceE-EEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhh
Confidence 3667788999999999999999998 455554 56779999999999999999999999999999999998
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.11 E-value=1.3e-05 Score=62.70 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=97.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.++.+-++.+...+..|||.+.+.+.-+.|...|...|+++-.++.... ++-..++.+=- .++ .+-++|.
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAqAG--~~G--aVTIATN 90 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAVAG--RRG--GVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHTTT--STT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHhcc--cCC--cEEeecc
Confidence 467999999999999999999999999999999999999999999999999753 33334554432 222 2478999
Q ss_pred cccccccccc----------------------------------------------------cceeEEecCCCCcchhhh
Q psy10684 136 AGGLGINLAT----------------------------------------------------ADVVVLYDSDWNPQMDLQ 163 (288)
Q Consensus 136 ~~~~Glnl~~----------------------------------------------------a~~vi~~d~~wnp~~~~Q 163 (288)
-+|+|-|+.- .=|||-.+..-+..++.|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 9999999852 337899999999999999
Q ss_pred hhHHHHHHhhhcch
Q psy10684 164 AMVREAKILRRGSI 177 (288)
Q Consensus 164 a~~R~~R~Gq~~~v 177 (288)
--||++|.|..++.
T Consensus 171 LRGRsGRQGDPGsS 184 (219)
T d1nkta4 171 LRGRSGRQGDPGES 184 (219)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred ccccccccCCCccc
Confidence 99999999999875
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=97.86 E-value=3.8e-06 Score=65.44 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=59.5
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-----Chhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-----NPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-----np~~~~Qa~~Ra 283 (288)
..|+....++|++++++|.+++++|. +..+.| |+++.+.+.|++....++||+||++- ++.-.-|.++||
T Consensus 53 ~~g~~~~~~hg~~~~~eR~~~l~~Fr--~g~~~v-LVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRa 127 (181)
T d1t5la2 53 EAGIKVAYLHSEIKTLERIEIIRDLR--LGKYDV-LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 127 (181)
T ss_dssp TTTCCEEEECSSCCHHHHHHHHHHHH--HTSCSE-EEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred hCCcceeEecCCccHHHHHHHHHHHH--CCCCCE-EEehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhh
Confidence 45889999999999999999999998 555554 55779999999999999999999984 444446999998
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=97.80 E-value=4.3e-06 Score=64.47 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=59.5
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC--Ch---hhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW--NP---QMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w--np---~~~~Qa~~Ra 283 (288)
+.|+....++|+++..+|.+.+++|. +.++. .|+++.+.+.|++....+.|+++|++- .| ...-|.++||
T Consensus 53 ~~Gi~a~~~Hg~~~~~eR~~~l~~F~--~G~~~-vLVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~ 127 (174)
T d1c4oa2 53 EHGIRARYLHHELDAFKRQALIRDLR--LGHYD-CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 127 (174)
T ss_dssp HTTCCEEEECTTCCHHHHHHHHHHHH--TTSCS-EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred hcCCceEEEecccchHHHHHHHHHHH--CCCeE-EEEeeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhh
Confidence 56899999999999999999999998 55555 566779999999999999999999874 23 3346999998
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=3.7e-05 Score=60.78 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=56.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC-CChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~-wnp~~~~Qa~~Ra 283 (288)
++.+..++|+|++++|++++.+|. +.++. +|+||..-++|++...|+.+|+++++ |-.+--.|-.+|+
T Consensus 64 ~~~v~~lHG~m~~~eke~~m~~F~--~g~~~-iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRv 132 (206)
T d1gm5a4 64 EFKLGLMHGRLSQEEKDRVMLEFA--EGRYD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRV 132 (206)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHT--TTSSS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTS
T ss_pred CCeEEEEeecccHHHHHHHHHHHH--CCCEE-EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhhe
Confidence 456778999999999999999998 55555 45678999999999999999999988 6777778988876
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.31 E-value=3.3e-05 Score=62.98 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=43.2
Q ss_pred ccCCCccccchhHHHhhcccCCCCeeEEEEeec---ccccCCCcc-ccceEEEeCCCCChh
Q psy10684 218 RLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR---AGGLGINLA-TADVVVLYDSDWNPQ 274 (288)
Q Consensus 218 ~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~---agg~glnl~-~a~~v~~~d~~wnp~ 274 (288)
.++|+++.++|.+.+++|. +.++.|++.+.. ..+-||++. +.+.||+||+||+|+
T Consensus 48 ~~hg~~~~~~R~~~~~~f~--~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~~~~ 106 (248)
T d1gkub2 48 KFRIGIVTATKKGDYEKFV--EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRV 106 (248)
T ss_dssp SSCEEECTTSSSHHHHHHH--HTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEE
T ss_pred hccCCCCHHHHHHHHHHHH--hCCCeEEEEeccccchhhhccCccccccEEEEeCCCcchh
Confidence 3789999999999999998 455666665543 356699998 599999999999885
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.31 E-value=0.001 Score=51.98 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=51.3
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE-------eCCCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------YDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~-------~d~~wnp~~~~Qa~~Ra 283 (288)
.....+|+++.++|..+.+.|+ +..++|++ ++.+-+.|+|+.+.+.||. .+.+.++..-.|-++||
T Consensus 96 GIa~hh~~l~~~~r~~ie~~f~--~g~i~vlv-aT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRA 168 (201)
T d2p6ra4 96 GAAFHHAGLLNGQRRVVEDAFR--RGNIKVVV-ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA 168 (201)
T ss_dssp TCCEECTTSCHHHHHHHHHHHH--TTSCCEEE-ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTB
T ss_pred cHHHHHHHhhhhhHHHHHHHHh--CCCceEEE-echHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhccc
Confidence 3567899999999999999998 55566555 5688899999976666554 33446777788999999
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.012 Score=45.80 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=54.2
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC-CChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~-wnp~~~~Qa~~Ra 283 (288)
++.+..++|+|+.+++++.+.+|. +..+. +|++++.=.+|++...||.+|+.+.+ +--+--.|--+|.
T Consensus 57 ~~~i~~lHGkm~~~eke~im~~F~--~g~~~-ILv~TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRV 125 (211)
T d2eyqa5 57 EARIAIGHGQMRERELERVMNDFH--HQRFN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 125 (211)
T ss_dssp TSCEEECCSSCCHHHHHHHHHHHH--TTSCC-EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTC
T ss_pred ceEEEEEEeccCHHHHHHHHHHHH--cCCcc-eEEEehhhhhccCCCCCcEEEEecchhcccccccccccee
Confidence 356778999999999999999998 55555 45577889999999999999999887 4555555665554
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.28 Score=38.47 Aligned_cols=93 Identities=10% Similarity=0.059 Sum_probs=71.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|....+..+......|.++++-+............++. -++....+||..+..+|.++.....+ +.+.+ +
T Consensus 86 GsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~--g~~~i-v 162 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDI-L 162 (233)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSE-E
T ss_pred CCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhC--CCCCE-E
Confidence 79999999999988888999999999988877777776665 47899999999999999999999984 44455 4
Q ss_pred Eecccc-cccccccccceeEE
Q psy10684 132 LSTRAG-GLGINLATADVVVL 151 (288)
Q Consensus 132 ~s~~~~-~~Glnl~~a~~vi~ 151 (288)
+-|.+. ...+.+..-.-||.
T Consensus 163 iGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 163 IGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EeehhhhccCCccccccceee
Confidence 444443 33455554444444
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.80 E-value=0.19 Score=40.22 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=68.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHH----HHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDIL----EDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l----~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|.......+......|.++++-+......... ...+...|+....++|+++..+|.++....++ +++.+++
T Consensus 114 GSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~--g~~~iiI 191 (264)
T d1gm5a3 114 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVI 191 (264)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEE
T ss_pred cccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHC--CCCCEEE
Confidence 79999988888888788899999999877665544 44555558999999999999999999999984 4556655
Q ss_pred EecccccccccccccceeEE
Q psy10684 132 LSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~ 151 (288)
.+..+--..+.+....-||.
T Consensus 192 GThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 192 GTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp ECTTHHHHCCCCSCCCEEEE
T ss_pred eehHHhcCCCCccccceeee
Confidence 44333333455444444443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.55 E-value=0.045 Score=39.51 Aligned_cols=60 Identities=13% Similarity=-0.067 Sum_probs=44.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC----CCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD----SDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d----~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++.++| + +.... +|+++.+.+.|++ ..-+.||.+| +++++....|.++||
T Consensus 59 G~~~~~~H~~~~~~~~-------~--~~~~~-vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~~~~~y~qr~GR~ 122 (138)
T d1jr6a_ 59 GINAVAYYRGLDVSVI-------P--TNGDV-VVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRT 122 (138)
T ss_dssp TCEEEEECTTCCSCCC-------T--TSSCE-EEEESSSSCSSSC-CCBSEEEECSEETTEECCHHHHHHHHTTB
T ss_pred ccchhhhhccchhhhh-------h--hhhcc-eeehhHHHHhccc-cccceEEEEEecCCCCCCHHHHHhHhccc
Confidence 4556667888876654 3 23333 5677799999999 7788998865 567777788999998
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.02 E-value=0.049 Score=44.40 Aligned_cols=69 Identities=7% Similarity=-0.177 Sum_probs=46.0
Q ss_pred hhhhcccCCCccccch----------hHHHhhcccCCCCeeEEEEe--ecccccCCCccccceEEEeCCCCChhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDR----------QRQINDFNMEGSDIFIFMLS--TRAGGLGINLATADVVVLYDSDWNPQMDLQAM 280 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R----------~~~i~~f~~~~~~~~v~l~s--~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~ 280 (288)
|+....++|+++.+.| ...+.+|. ..+..+++.+ ...|+.|+++....+|+.+|.+.|+..-.|.+
T Consensus 60 Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~--~G~~dvVVaT~~~a~g~~giDid~V~~VI~~d~P~SvesyIQRi 137 (299)
T d1a1va2 60 GINAVAYYRGLDVSVIPTSGDVVVVATDALMTGF--TGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRR 137 (299)
T ss_dssp TCCEEEECTTSCGGGSCSSSSEEEEECTTC---C--CCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHhccchHHHHHHHHHHHh--cCCCcEEEEEeehhccCCCCCCCcceEEEeCCCCCCHHHHHhhc
Confidence 3344445555555544 34566665 3444444433 34467789999999999999999999999999
Q ss_pred hhh
Q psy10684 281 VRT 283 (288)
Q Consensus 281 ~Ra 283 (288)
+|+
T Consensus 138 GRT 140 (299)
T d1a1va2 138 GRT 140 (299)
T ss_dssp TTB
T ss_pred ccc
Confidence 998
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.79 E-value=0.26 Score=39.61 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=36.6
Q ss_pred ccCchHH-HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcE
Q psy10684 55 FNSGKMV-VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFK 100 (288)
Q Consensus 55 ~~s~K~~-~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~ 100 (288)
..|+|.. ++..++.....++.++||.+.....+..+.+.|...++.
T Consensus 18 TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~ 64 (305)
T d2bmfa2 18 PGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIR 64 (305)
T ss_dssp TTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCB
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcc
Confidence 4688985 566777776677889999999999999898888776554
|