Psyllid ID: psy10687

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
Protein Sequence
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIWPQ
Secondary Structure (PSIPRED)
cEEEEcccHHHHHHHHHHHHHHcccccEEcccccHHccccEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccEEEEccccHHHHHHHHHHHHEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHEEEEEcccccHHHHHHHccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEEEEEcccHHHHcccccccccccEEEEEEEEccccccEEEEHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHEEEEEccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHEEEEEEEcccccccccccHHHHHHHHHHHHHEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccHHHHHHHHHHHHHHccccccHccccHHHHHHHHEEEEEEEEEEEEEEEEEEcccccEEccccccEEEEEEEcccEEEEEEEEEEEEEccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEEccccccccccccHHHHEHHEHHHHHcHHHHHHEHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mialdftgGMFSILQMVILAINfddwdgflidrtklglglfsVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWtisfypqlytnykkksikpsdihVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLgyysssliqdqffekngtnsnpvqlndVFFSIHATIITLLTIFQCLIyergtqkvsIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYipqdqffekngtnsnpvqlndVFFSIHATIITLLTIFQCLIYEAYMNFqrkstsgwsigNVLLDFTGGMFSILQMVILAINfvgsnikpsdihVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLgyysssliqdqffekngtnsnpvqlndVFFSIHATIVTLLTIFQCLIyergtqkvsIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAymnfqrkstsgwsignVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIWPQ
Flexible Loop (DISEMBL)
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIWPQ
Low Complexity Region (SEG)
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTlyslynlgyyssslIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTlyslynlgyyssslIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIWPQ
Disordered region (IsUnstruct)
**ALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIW**
Disordered Region (DISOPRED)
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYS***************************FSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQF************LNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCI**KL*****
Disordered Region (DISEMBL)
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIWPQ
Disordered Region (DISPRO)
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIW**
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIALDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFYCILKKLGIWPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	622	2.2.26 [Sep-21-2011]
Q9VCR7	397	Cystinosin homolog OS=Dro	yes	N/A	0.274	0.430	0.516	4e-57
A7MB63	367	Cystinosin OS=Bos taurus	yes	N/A	0.257	0.435	0.515	6e-53
O60931	367	Cystinosin OS=Homo sapien	yes	N/A	0.284	0.482	0.488	1e-51
A8WN56	403	Cystinosin homolog OS=Cae	N/A	N/A	0.271	0.419	0.464	4e-51
P57757	367	Cystinosin OS=Mus musculu	yes	N/A	0.379	0.643	0.466	2e-50
Q09500	404	Cystinosin homolog OS=Cae	yes	N/A	0.350	0.539	0.448	8e-50
P57758	270	Cystinosin homolog OS=Ara	yes	N/A	0.356	0.822	0.451	4e-46
Q54WT7	284	Cystinosin homolog OS=Dic	yes	N/A	0.292	0.640	0.497	1e-43
P17261	260	Cystine transporter OS=Sa	yes	N/A	0.294	0.703	0.278	4e-13

>sp|Q9VCR7|CTNS_DROME Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 147/211 (69%)

Query: 371 IHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTL 430
           + V V K   L   S I GW+YF AW++SFYPQ+++NY++KSV GLNFDFL LN++GFTL
Sbjct: 118 VRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTL 177

Query: 431 YSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQK 490
           YS++N G Y    +Q+++  +     NPV LNDV FS+HA   T +TI QC  Y+R  Q+
Sbjct: 178 YSMFNCGLYFIEDLQNEYEVRYPLGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQR 237

Query: 491 VSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRK 550
           VS  A  ++  + + +    GL   +   W+DFL  CS VKLTIT+IKY+PQA MN++RK
Sbjct: 238 VSFIAYGILAIFAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRK 297

Query: 551 STSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           STSGWSIGN+LLDFTGG  S+LQM++ A N+
Sbjct: 298 STSGWSIGNILLDFTGGTLSMLQMILNAHNY 328

Thought to transport cystine out of lysosomes.
Drosophila melanogaster (taxid: 7227)

>sp|A7MB63|CTNS_BOVIN Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1

 Score =  209 bits (531), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 140/200 (70%)

Query: 381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYS 440
           + + + +IGWIYF AW++SFYPQ+ TN+++KSV+GL+FDF+ LNL+GF  YS++N+G + 
Sbjct: 123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query: 441 SSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
              I++QF  K     NPV  NDVFFS+HA  +TL+ I QCL+YERG+Q+VS  A   + 
Sbjct: 183 VPSIKEQFLLKYPNGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLV 242

Query: 501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
             +L+    L +       W+ FL   S +KL +TL+KY PQAYMNF  KST GWSIGNV
Sbjct: 243 LSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNV 302

Query: 561 LLDFTGGMFSILQMVILAIN 580
           LLDFTGG FS+LQM + + N
Sbjct: 303 LLDFTGGSFSLLQMFLQSYN 322

Thought to transport cystine out of lysosomes.

Bos taurus (taxid: 9913)

>sp|O60931|CTNS_HUMAN Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/217 (48%), Positives = 141/217 (64%)

Query: 364 SNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGL 423
           SN     I   V +   + + + +IGWIYF AW+ISFYPQ+  N+++KSVIGL+FDF+ L
Sbjct: 106 SNQTGPRIRFLVIRSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVAL 165

Query: 424 NLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLI 483
           NL GF  YS++N+G      I++QF  K     NPV  NDVFFS+HA ++TL+ I QC +
Sbjct: 166 NLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDVFFSLHAVVLTLIIIVQCCL 225

Query: 484 YERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQA 543
           YERG Q+VS  A   +   +L+    + +       W+ FL   S +KL +TL+KY PQA
Sbjct: 226 YERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQA 285

Query: 544 YMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAIN 580
           YMNF  KST GWSIGNVLLDFTGG FS+LQM + + N
Sbjct: 286 YMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYN 322

Thought to transport cystine out of lysosomes.

Homo sapiens (taxid: 9606)

>sp|A8WN56|CTNS_CAEBR Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1

 Score =  203 bits (516), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 139/209 (66%)

Query: 372 HVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLY 431
            + V +   L +   I+GW YF+AW++SFYPQ+Y N+K+KSV+GLNFDFL LNL+GF  Y
Sbjct: 115 RITVIRSHWLAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAY 174

Query: 432 SLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKV 491
           +++NL  Y +S +++ +  +N  +  PV LNDV F++HA +   +TI QC+ YER  Q++
Sbjct: 175 AMFNLLMYYNSHVKNIYSMENPRSPPPVLLNDVVFAVHAFLACFVTILQCIFYERDQQRI 234

Query: 492 SIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKS 551
           S     L+     +    + + + NK   +DF+   S +K+ +T  KY PQAY N+QRKS
Sbjct: 235 STKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKS 294

Query: 552 TSGWSIGNVLLDFTGGMFSILQMVILAIN 580
           T GWSIGN+LLDFTGG   ILQMV+ AIN
Sbjct: 295 TVGWSIGNILLDFTGGSLDILQMVLQAIN 323

Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|P57757|CTNS_MOUSE Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1

 Score =  201 bits (510), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 150/242 (61%), Gaps = 6/242 (2%)

Query: 381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYS 440
           + + + +IGWIYF AW++SFYPQ+  N+++KSVIGL+FDFL LNL GF  YS++N+G   
Sbjct: 123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query: 441 SSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
              IQ++F  K     NPV  ND FFS+HA  +TL+ I QC +YERG Q+VS  +   + 
Sbjct: 183 VPYIQEEFLLKYPNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLV 242

Query: 501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
             +L++   + +       W+ FL   S +KL ITLIKY PQAYMNF  KST GWSIG V
Sbjct: 243 LAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGV 302

Query: 561 LLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIF----FYSSVFYCILKK 616
           LLDFTGG FS+LQM + + N    + T + G   K  L +  IF    F+   FY   KK
Sbjct: 303 LLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360

Query: 617 LG 618
            G
Sbjct: 361 PG 362

Thought to transport cystine out of lysosomes.

Mus musculus (taxid: 10090)

>sp|Q09500|CTNS_CAEEL Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2

 Score =  199 bits (505), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 100/223 (44%), Positives = 138/223 (61%), Gaps = 5/223 (2%)

Query: 363 GSNIKPSDIH-----VAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLN 417
           GS   P D+      + V +   L +   I+GW YF AW+ISFYPQ+Y N+K+KSV+GLN
Sbjct: 102 GSITCPLDLEDAFARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLN 161

Query: 418 FDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLT 477
           FDFL LNL+GF  Y+++NL  Y +S +++++   N  +  PV LNDV F++HA +   +T
Sbjct: 162 FDFLSLNLVGFCAYAIFNLLMYYNSHVKNEYNIVNPRSPPPVLLNDVVFAVHAFLACFIT 221

Query: 478 IFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLI 537
           I QCL YER  Q VS     LM     +        +  K Q + F+   S +K+ +T  
Sbjct: 222 ILQCLFYERDNQSVSSKCIALMIVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCC 281

Query: 538 KYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAIN 580
           KY PQAY N+ RKST GWSIGN++LDFTGG   ILQM++ A+N
Sbjct: 282 KYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVN 324

Thought to transport cystine out of lysosomes (By similarity). May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|P57758|CTNS_ARATH Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1

 Score =  186 bits (473), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 149/226 (65%), Gaps = 4/226 (1%)

Query: 381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYS 440
           L ++ +I+GWI F++W+ISFYPQL  N++++SV+GLNFDF+ LNL   + Y +YN+  Y 
Sbjct: 9   LEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYMIYNVCLYF 68

Query: 441 SSLIQDQFFEKNGTNSN-PVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLM 499
           S +IQ Q+F+  G     PV  NDV FSIHA ++T +T+FQ  IYERG QKVS  A  ++
Sbjct: 69  SPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIV 128

Query: 500 CAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGN 559
              + + + +   +      W+  ++  + +++ +T +KYIPQA MNF RKST GWSIGN
Sbjct: 129 VVVWGF-AAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGN 187

Query: 560 VLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFF 605
           +LLDFTGG+ + LQMVI +I+   +      G + KTLL +  IFF
Sbjct: 188 ILLDFTGGLANYLQMVIQSID--QNSWKNFYGNMGKTLLSLISIFF 231

Thought to transport cystine out of lysosomes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54WT7|CTNS_DICDI Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 133/189 (70%), Gaps = 7/189 (3%)

Query: 389 GWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQF 448
           GWIYF+ W++SFYPQ+  N++KK+VIGL+FDFL  N+ G+  YS++N   Y   L+++++
Sbjct: 12  GWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEY 71

Query: 449 FEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVS---IGARCLMCAYFLY 505
           ++K G    PVQ +D+ F+IH  ++T +TI QC IY+RG QK S   IG   L+    + 
Sbjct: 72  YDKYGP-PIPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIV 130

Query: 506 LSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFT 565
           ++ +LG    N F W+  +N  S VKL IT IKYIPQAY+NF+ KSTSGWS+ NVLLDF+
Sbjct: 131 MT-ILGFS--NVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFS 187

Query: 566 GGMFSILQM 574
           GG+ S+LQM
Sbjct: 188 GGVLSLLQM 196

Thought to transport cystine out of lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|P17261|ERS1_YEAST Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERS1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 25/208 (12%)

Query: 386 DIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQ 445
           DI+G +Y ++W+IS YP + TN++ KS   ++ DF+ LN  G++   +       S  +Q
Sbjct: 6   DILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLNTAGYSYLVI-------SIFLQ 58

Query: 446 DQFFEKNGTNSNPVQLN----DVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCA 501
              ++  G  S+  +      D ++ +H  ++ ++ + Q +   R  +    G R +   
Sbjct: 59  LYCWKMTGDESDLGRPKLTQFDFWYCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPW 118

Query: 502 YFLYLSGVLGLVLFNKFQ------WIDFLNQ-----CSD---VKLTITLIKYIPQAYMNF 547
           Y   L   L +      Q      W D+ N      C++   +K++++LIKYIPQ   N 
Sbjct: 119 YLRILLASLAIFSLLTVQFMYSNYWYDWHNSRTLAYCNNLFLLKISMSLIKYIPQVTHNS 178

Query: 548 QRKSTSGWSIGNVLLDFTGGMFSILQMV 575
            RKS   + I  V LD TGG+ S+LQ++
Sbjct: 179 TRKSMDCFPIQGVFLDVTGGIASLLQLI 206

Transport cystine out of vacuoles/endodomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
328696985	369	PREDICTED: cystinosin homolog [Acyrthosi	0.361	0.609	0.526	4e-61
357620442	390	hypothetical protein KGM_12961 [Danaus p	0.305	0.487	0.563	5e-61
340727715	462	PREDICTED: cystinosin homolog [Bombus te	0.514	0.692	0.395	7e-61
350425469	462	PREDICTED: cystinosin homolog isoform 2	0.514	0.692	0.398	8e-61
350425466	397	PREDICTED: cystinosin homolog isoform 1	0.514	0.806	0.398	1e-60
328710507	403	PREDICTED: cystinosin homolog isoform 2	0.408	0.630	0.505	2e-60
332376757	368	unknown [Dendroctonus ponderosae]	0.286	0.483	0.527	3e-60
332023894	415	Cystinosin-like protein [Acromyrmex echi	0.350	0.525	0.513	4e-60
383849782	481	PREDICTED: cystinosin homolog [Megachile	0.360	0.465	0.523	4e-60
345483519	469	PREDICTED: cystinosin homolog isoform 4	0.361	0.479	0.5	5e-60

>gi|328696985|ref|XP_001947521.2| PREDICTED: cystinosin homolog [Acyrthosiphon pisum]

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 120/228 (52%), Positives = 162/228 (71%), Gaps = 3/228 (1%)

Query: 356 ILAINFVGSNIKPSD--IHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSV 413
           +L ++   S+IK SD  + V ++    L L S ++GWIYF AW+ISFYPQ+Y N+K+KSV
Sbjct: 104 LLKVDAYLSSIKSSDAFVRVTLQHSNELALVSAVVGWIYFGAWSISFYPQMYENWKRKSV 163

Query: 414 IGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIV 473
           +GLNFDF+ LNLIGF LYS++N+G +    ++ ++  +     NPVQLND+ FSIHA   
Sbjct: 164 VGLNFDFIALNLIGFMLYSMFNVGLWIPE-VEKEYSARYPRGLNPVQLNDILFSIHAVFA 222

Query: 474 TLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLT 533
           TL+T+ QC  YE+G Q+VS  A+ +M  Y L ++ +L LV      W+DFL  CS +KLT
Sbjct: 223 TLITVTQCYFYEKGDQQVSRTAKSIMSFYGLLITMLLVLVYLQNIVWLDFLYYCSYIKLT 282

Query: 534 ITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           ITLIKYIPQA MN++RKST GWSIGN+ LDF GG+ SILQM+I A N+
Sbjct: 283 ITLIKYIPQAVMNYKRKSTFGWSIGNIFLDFIGGLLSILQMIINAYNY 330

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620442|gb|EHJ72634.1| hypothetical protein KGM_12961 [Danaus plexippus]

 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 150/204 (73%), Gaps = 14/204 (6%)

Query: 385 SDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLI 444
           S I+GWIYF AW++SFYPQ+Y N+K+KSV+GLNFDFL LN++GF +YSL+N G Y S  I
Sbjct: 146 SYIMGWIYFLAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFAMYSLFNCGLYFSKDI 205

Query: 445 QDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFL 504
           Q ++F ++  + NPVQLNDVFFS+HA+  TL+TI QC +YER  Q+VS+  RC+      
Sbjct: 206 QSEYFSRHPRSLNPVQLNDVFFSLHASFATLITITQCFLYERENQRVSVTGRCV------ 259

Query: 505 YLSGVLGLVLFN-------KFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSI 557
            L G+ G+ L +       K  W+DFLN CS +KL ITLIKY+PQAYMN++RKST GWSI
Sbjct: 260 -LGGMAGVALVSASVAGAGKLAWLDFLNYCSYIKLCITLIKYVPQAYMNYKRKSTVGWSI 318

Query: 558 GNVLLDFTGGMFSILQMVILAINF 581
           GN+ LDF GG  S+LQM + A N+
Sbjct: 319 GNIFLDFVGGSLSVLQMTLNAYNY 342

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727715|ref|XP_003402183.1| PREDICTED: cystinosin homolog [Bombus terrestris]

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 134/339 (39%), Positives = 209/339 (61%), Gaps = 19/339 (5%)

Query: 243 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVF 302
           F++  G++ +++ +K  W DF     D      LI ++   + FE   T +      DV 
Sbjct: 3   FMWYIGIITILVADK-AWADFKVSNQD------LIVHVDSQESFELYLTKNLS---EDVS 52

Query: 303 FSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 362
            +I      L+++    IY    + ++K    W   ++L++      SI+ + +   N  
Sbjct: 53  VTIEVQHPDLVSVNTSSIYITKNDTKKK----W---DILINGRSAGHSIISLNVTPNNV- 104

Query: 363 GSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLG 422
            ++   + + V +EK   L   S ++GWIYF AW++SFYPQ+Y+NYK+KSV+GLNFD+L 
Sbjct: 105 -TDYSQAFVRVTIEKSDILYHISTVVGWIYFLAWSVSFYPQIYSNYKRKSVVGLNFDYLS 163

Query: 423 LNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCL 482
           LNL+GF LY+L+N G Y   +++ ++F +     NPVQ+ND+FF++HAT  T++TI QC 
Sbjct: 164 LNLVGFILYALFNCGLYWIPVVELEYFRRYPKGLNPVQVNDIFFALHATFATVITIIQCF 223

Query: 483 IYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ 542
           IYE G Q+VS  AR +   + +++   + L +    +W+DFL  CS VKL+ITLIKY+PQ
Sbjct: 224 IYETGNQRVSTTARIIHGIFVVFILISMILAIVTTIKWLDFLYYCSYVKLSITLIKYVPQ 283

Query: 543 AYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           A+ N++RKST GWSIGN+ LDFTGGM S+LQM++ A N+
Sbjct: 284 AFYNYKRKSTVGWSIGNIFLDFTGGMLSMLQMILNAYNY 322

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425469|ref|XP_003494131.1| PREDICTED: cystinosin homolog isoform 2 [Bombus impatiens]

 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 135/339 (39%), Positives = 207/339 (61%), Gaps = 19/339 (5%)

Query: 243 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVF 302
           F++  G++ +++ +K  W DF     D      LI ++   + FE   T S      DV 
Sbjct: 3   FVWYIGIITILVADK-AWADFKVSNQD------LIVHVDSQESFELYLTKSLS---EDVS 52

Query: 303 FSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 362
            +I      L+++    IY    + ++K    W   ++L++      SI+ + +   N  
Sbjct: 53  VTIEVQHPDLVSVNTSSIYITKNDTKKK----W---DILINGRSAGHSIISLNVTPNNV- 104

Query: 363 GSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLG 422
            ++   + + V +EK   L   S ++GWIYF AW++SFYPQ+Y+NYK+KSV+GLNFD+L 
Sbjct: 105 -TDYSQAFVRVTIEKSDTLYHISTVVGWIYFLAWSVSFYPQIYSNYKRKSVVGLNFDYLS 163

Query: 423 LNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCL 482
           LNL+GF LY+L+N G Y    ++ ++F +     NPVQ+ND+FF++HAT  T++TI QC 
Sbjct: 164 LNLVGFILYALFNCGLYWIPEVELEYFRRYPKGLNPVQVNDIFFALHATFATVITIIQCF 223

Query: 483 IYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ 542
           IYE G Q+VS  AR +   + +++   + L +     W+DFL  CS VKL+ITLIKY+PQ
Sbjct: 224 IYEAGNQRVSTTARIIHGIFVVFILISMILAIVTTINWLDFLYYCSYVKLSITLIKYVPQ 283

Query: 543 AYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           A+ N++RKST GWSIGN+ LDFTGGM S+LQM++ A N+
Sbjct: 284 AFYNYKRKSTVGWSIGNIFLDFTGGMLSMLQMILNAYNY 322

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425466|ref|XP_003494130.1| PREDICTED: cystinosin homolog isoform 1 [Bombus impatiens]

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/339 (39%), Positives = 207/339 (61%), Gaps = 19/339 (5%)

Query: 243 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVF 302
           F++  G++ +++ +K  W DF     D      LI ++   + FE   T S      DV 
Sbjct: 3   FVWYIGIITILVADK-AWADFKVSNQD------LIVHVDSQESFELYLTKS---LSEDVS 52

Query: 303 FSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 362
            +I      L+++    IY    + ++K    W   ++L++      SI+ + +   N  
Sbjct: 53  VTIEVQHPDLVSVNTSSIYITKNDTKKK----W---DILINGRSAGHSIISLNVTPNNV- 104

Query: 363 GSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLG 422
            ++   + + V +EK   L   S ++GWIYF AW++SFYPQ+Y+NYK+KSV+GLNFD+L 
Sbjct: 105 -TDYSQAFVRVTIEKSDTLYHISTVVGWIYFLAWSVSFYPQIYSNYKRKSVVGLNFDYLS 163

Query: 423 LNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCL 482
           LNL+GF LY+L+N G Y    ++ ++F +     NPVQ+ND+FF++HAT  T++TI QC 
Sbjct: 164 LNLVGFILYALFNCGLYWIPEVELEYFRRYPKGLNPVQVNDIFFALHATFATVITIIQCF 223

Query: 483 IYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ 542
           IYE G Q+VS  AR +   + +++   + L +     W+DFL  CS VKL+ITLIKY+PQ
Sbjct: 224 IYEAGNQRVSTTARIIHGIFVVFILISMILAIVTTINWLDFLYYCSYVKLSITLIKYVPQ 283

Query: 543 AYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           A+ N++RKST GWSIGN+ LDFTGGM S+LQM++ A N+
Sbjct: 284 AFYNYKRKSTVGWSIGNIFLDFTGGMLSMLQMILNAYNY 322

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710507|ref|XP_003244286.1| PREDICTED: cystinosin homolog isoform 2 [Acyrthosiphon pisum] gi|328710509|ref|XP_001949769.2| PREDICTED: cystinosin homolog isoform 1 [Acyrthosiphon pisum]

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/263 (50%), Positives = 179/263 (68%), Gaps = 9/263 (3%)

Query: 356 ILAINFVGSNIKPSD--IHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSV 413
           +L ++   ++IK SD  + V ++    L L S ++GWIYF AW+ISFYPQ+Y N+++KSV
Sbjct: 104 LLKVDAYPASIKSSDAFVRVTLQHSNELALFSVVVGWIYFVAWSISFYPQMYENWRRKSV 163

Query: 414 IGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIV 473
           +GLNFDF+ LNLIGF LYS++N+G +   + +D +  +N    NPVQLND+FFSIHA   
Sbjct: 164 VGLNFDFIALNLIGFMLYSMFNVGLWIPEIEKD-YSARNPRGLNPVQLNDIFFSIHAVFA 222

Query: 474 TLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLT 533
           TL+T+ QC  YE+G Q+VS  A+ +M  Y L ++ +L LV   K  W+DFL  CS +KLT
Sbjct: 223 TLITVAQCYFYEKGDQQVSRTAKSIMSFYGLLIAILLVLVYLQKIVWLDFLYYCSYIKLT 282

Query: 534 ITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF-----VGSKLTC 588
           ITLIKYIPQA MN++RKST GWSIGN+ LDFTGG+ SILQM+I A N+     V    T 
Sbjct: 283 ITLIKYIPQAVMNYKRKSTIGWSIGNIFLDFTGGLLSILQMIINAYNYNDWASVFGDPTK 342

Query: 589 LGGVVVKTLLDINLIFFYSSVFY 611
            G  ++  + DI L F    VFY
Sbjct: 343 FGLGLLSVIFDI-LFFLQHYVFY 364

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376757|gb|AEE63518.1| unknown [Dendroctonus ponderosae]

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 161/218 (73%)

Query: 364 SNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGL 423
           +N+      V V ++  L + S  IGWIYF AW++SFYPQ+Y N+K++SVIGLNFDFL L
Sbjct: 109 ANVDEVYFRVTVHREPWLDIFSTTIGWIYFLAWSVSFYPQVYINWKRRSVIGLNFDFLAL 168

Query: 424 NLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLI 483
           N++GF LYS++NLG Y    I+ ++ E+     NPVQ+ND+FF++HA I+T +TI QC++
Sbjct: 169 NIVGFILYSIFNLGLYYIPEIKKEYSERYPRGLNPVQVNDIFFAVHAVILTSVTIGQCVL 228

Query: 484 YERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQA 543
           YER  Q+VS  AR ++  + ++++  + L   +   WIDFL  CS VKLTITLIKYIPQA
Sbjct: 229 YERAEQRVSTTARIILGFFGVFIAISIVLSGCDVIHWIDFLYYCSYVKLTITLIKYIPQA 288

Query: 544 YMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           +MN++R+STSGWSIGN+LLDFTGG  S+LQM++ A N+
Sbjct: 289 FMNYRRQSTSGWSIGNILLDFTGGTLSMLQMILNAYNY 326

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023894|gb|EGI64114.1| Cystinosin-like protein [Acromyrmex echinatior]

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 162/230 (70%), Gaps = 12/230 (5%)

Query: 362 VGSNIKPSDI--------HVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSV 413
           V +N+ PSDI         V +EK   L   S ++GWIYF AW++SFYPQ+Y NYK+KSV
Sbjct: 45  VSANVTPSDIIDFSQAFVRVTIEKSDTLYHISAVVGWIYFLAWSVSFYPQIYINYKRKSV 104

Query: 414 IGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIV 473
           +GLNFD++ LNL+GF +Y+L+N G Y    I+ ++FE+     NPVQ+ND+FFS+HA   
Sbjct: 105 VGLNFDYVSLNLVGFLMYALFNCGLYWIPEIEKEYFERYPKGLNPVQINDIFFSLHAVFA 164

Query: 474 TLLTIFQCLIYERGTQKVSIGARCL--MCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVK 531
           +++ I QC IYE G Q+VS  AR +  + A F+ +S +L  V     QW+DFL  CS VK
Sbjct: 165 SIIVIGQCFIYETGNQRVSTTARIIHGIFATFILISLILSSV--KTIQWLDFLYYCSYVK 222

Query: 532 LTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           L++TLIKY+PQA+ N++RKST GWSIGNV LDFTGG+ S+LQM++ A N+
Sbjct: 223 LSVTLIKYVPQAFYNYRRKSTVGWSIGNVFLDFTGGILSMLQMILNAYNY 272

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849782|ref|XP_003700515.1| PREDICTED: cystinosin homolog [Megachile rotundata]

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 164/231 (70%), Gaps = 7/231 (3%)

Query: 356 ILAINFVGSNIKP-SD--IHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKS 412
           ++A+N   +N+   SD  + V VEK   L   S ++GWIYF AW++SFYPQ+Y+NY++KS
Sbjct: 94  VVAVNITPNNVTDFSDAFVRVTVEKSEVLYHISSVVGWIYFLAWSVSFYPQIYSNYRRKS 153

Query: 413 VIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATI 472
           V+GLNFD+L LNLIGF +YSL+N G Y    ++ ++F +     NPVQ+ND+FFS+HA+ 
Sbjct: 154 VVGLNFDYLSLNLIGFIMYSLFNCGLYWIPEVELEYFRRYPKGLNPVQVNDIFFSLHASF 213

Query: 473 VTLLTIFQCLIYERGTQKVSIGARCLMC--AYFLYLSGVLGLVLFNKFQWIDFLNQCSDV 530
            T++TI QC IYE G Q VSI AR +    A F+ +S +L  V      W+DFL  CS V
Sbjct: 214 ATVITIIQCFIYEIGNQTVSITARIIHAIFAVFILISIILAGVA--TITWLDFLYYCSYV 271

Query: 531 KLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           KL ITLIKY+PQA+ N++RKST GWSIGN+ LDFTGGM S+LQM++ A N+
Sbjct: 272 KLCITLIKYVPQAFYNYKRKSTDGWSIGNIFLDFTGGMLSMLQMILNAYNY 322

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483519|ref|XP_003424836.1| PREDICTED: cystinosin homolog isoform 4 [Nasonia vitripennis]

 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/232 (50%), Positives = 164/232 (70%), Gaps = 7/232 (3%)

Query: 355 VILAINFVGSNIKPSD-----IHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYK 409
            +++ N  G++  PSD     + V VE+   L   S ++GWIYF AW+ISFYPQ+++NYK
Sbjct: 93  ALISTNVSGAD--PSDFSDAFLRVTVERSDTLYHVSAVVGWIYFLAWSISFYPQIHSNYK 150

Query: 410 KKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIH 469
           +KSV+GLNFD+L LNL+GF +Y+L+N G Y    I+ ++F +     NPVQ+ND+FF++H
Sbjct: 151 RKSVVGLNFDYLSLNLVGFIMYALFNCGLYWIPEIEQEYFSRYPKGLNPVQVNDIFFALH 210

Query: 470 ATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSD 529
           A   TL+TI QC IYE GTQ+VS  AR +   +  ++   + L + +  QW+DFL  CS 
Sbjct: 211 AVCATLVTIVQCFIYETGTQRVSTTARIIHGIFSSFVLISVILAILHVIQWLDFLYYCSY 270

Query: 530 VKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
           VKL ITLIKY+PQA+ N++RKST GWSIGN+ LDFTGG+ S+LQM++ A N+
Sbjct: 271 VKLAITLIKYVPQAFYNYKRKSTVGWSIGNIFLDFTGGVLSMLQMILNAYNY 322

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
ZFIN|ZDB-GENE-050522-352	384	ctns "cystinosis, nephropathic	0.501	0.812	0.396	6.3e-53
FB|FBgn0039045	397	CG17119 [Drosophila melanogast	0.347	0.544	0.481	3.5e-52
UNIPROTKB|E1BXK0	377	CTNS "Uncharacterized protein"	0.408	0.673	0.451	3.1e-51
UNIPROTKB|E2R8H4	388	CTNS "Uncharacterized protein"	0.376	0.603	0.460	3.1e-51
UNIPROTKB|F1RLI8	373	CTNS "Uncharacterized protein"	0.376	0.627	0.460	1.7e-50
UNIPROTKB|A7MB63	367	CTNS "Cystinosin" [Bos taurus	0.376	0.637	0.456	3.6e-50
RGD|1308466	367	Ctns "cystinosin, lysosomal cy	0.379	0.643	0.446	3.2e-49
UNIPROTKB|O60931	367	CTNS "Cystinosin" [Homo sapien	0.403	0.683	0.433	4.1e-49
MGI|MGI:1932872	367	Ctns "cystinosis, nephropathic	0.379	0.643	0.450	8.5e-49
UNIPROTKB|A8WN56	403	ctns-1 "Cystinosin homolog" [C	0.331	0.511	0.452	6e-48

ZFIN|ZDB-GENE-050522-352 ctns "cystinosis, nephropathic" [Danio rerio (taxid:7955)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 129/325 (39%), Positives = 185/325 (56%)

Query:   300 DVFFSIHATIITLLTIFQCLIYEAY---MNFQRKSTSGWSIGNVLLDFTGGMFSILQMVI 356
             ++  ++ + + T +T++  + YE+    +  Q         GN  + F      + Q+  
Sbjct:    43 NITITLSSPLNTSVTVYFNITYESNNVSLIIQLPDEVVVPAGNTSVSFAVQAKGVGQVTA 102

Query:   357 -LAINFVGSNIKPSD--IHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSV 413
              L+ N   ++IK  D  I   + +   L + + IIGWIYF AW++SFYPQ Y N+K++SV
Sbjct:   103 YLSSN--DTHIKSLDARIRFLIVRSNALFIINQIIGWIYFVAWSVSFYPQAYENWKRRSV 160

Query:   414 IGLNFDFLGLNLIGFTXXXXXXXXXXXXXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIV 473
             +GLNFDFL LNL GF               IQ++F +K+     PV  NDVFFS+HA ++
Sbjct:   161 VGLNFDFLALNLTGFIAYSVFNVGLFWVTYIQEEFLKKDPNGVIPVDANDVFFSLHALLL 220

Query:   474 TLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLT 533
             TL+ I QC IYERG QKVS  A  L+   + +    L + +  K  W+D+L   S +KL 
Sbjct:   221 TLVYICQCAIYERGGQKVSKVAIGLLAIGWTFAFVSLFVAVAKKISWLDYLYYFSYIKLG 280

Query:   534 ITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVV 593
             +TL+KYIPQA+MN++RKST GWSIGNVLLDFTGG FS++QM + A N    K   + G  
Sbjct:   281 VTLVKYIPQAHMNYRRKSTEGWSIGNVLLDFTGGSFSLIQMFLEAYN--NDKWRFIFGDP 338

Query:   594 VKTLLDINLIFF---YSSVFYCILK 615
              K  L I  IFF   +    YC+ +
Sbjct:   339 TKFGLGIFSIFFDILFIIQHYCLYR 363

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0039045 CG17119 [Drosophila melanogaster (taxid:7227)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 104/216 (48%), Positives = 141/216 (65%)

Query:   366 IKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNL 425
             +K   + V V K   L   S I GW+YF AW++SFYPQ+++NY++KSV GLNFDFL LN+
Sbjct:   113 VKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNI 172

Query:   426 IGFTXXXXXXXXXXXXXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYE 485
             +GFT              +Q+++  +     NPV LNDV FS+HA   T +TI QC  Y+
Sbjct:   173 VGFTLYSMFNCGLYFIEDLQNEYEVRYPLGVNPVMLNDVVFSLHAMFATCITILQCFFYQ 232

Query:   486 RGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYM 545
             R  Q+VS  A  ++  + + +    GL   +   W+DFL  CS VKLTIT+IKY+PQA M
Sbjct:   233 RAQQRVSFIAYGILAIFAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALM 292

Query:   546 NFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINF 581
             N++RKSTSGWSIGN+LLDFTGG  S+LQM++ A N+
Sbjct:   293 NYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNY 328

GO:0015811 "L-cystine transport" evidence=NAS

GO:0005765 "lysosomal membrane" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=NAS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

UNIPROTKB|E1BXK0 CTNS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 120/266 (45%), Positives = 155/266 (58%)

Query:   360 NFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFD 419
             N  G  I+   IH  + K        ++IGWIYF AW+ISFYPQL+ N+++KSV+GL+FD
Sbjct:   118 NLTGPRIQFQVIHSIIVK-----YVDEVIGWIYFLAWSISFYPQLFENWRRKSVVGLSFD 172

Query:   420 FLGLNLIGFTXXXXXXXXXXXXXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIF 479
             F+ LNL GF               I+++F        NPV +NDVFFS+HA  +TLLTI 
Sbjct:   173 FIALNLTGFIAYSVFNVGLFWIPLIKEEFLLHYPNGVNPVAINDVFFSLHAVALTLLTII 232

Query:   480 QCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKY 539
             QC IYER  QKVS     L+   +++    L L    +  W+ FL   S +KL +TLIKY
Sbjct:   233 QCCIYERAGQKVSKTVVGLLALAWIFTFTTLFLAAAEEMTWLQFLFCFSYIKLAVTLIKY 292

Query:   540 IPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLD 599
              PQAYMNF+RKST GWSIGNVLLDF GG FS+LQM + + N    KL  + G   K  L 
Sbjct:   293 FPQAYMNFRRKSTVGWSIGNVLLDFIGGSFSLLQMFLQSYNNDEWKL--IFGDPTKFGLG 350

Query:   600 INLIFFYSSVF----YCILKKLGIWP 621
             +  I F   VF    YC+ ++ G  P
Sbjct:   351 VFSIIF-DIVFMVQHYCLYRRRGYEP 375

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

UNIPROTKB|E2R8H4 CTNS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 110/239 (46%), Positives = 147/239 (61%)

Query:   381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTXXXXXXXXXXX 440
             + + + +IGWIYF +W+ISFYPQ+ TN+++KSV+GL+FDF+ LNL GF            
Sbjct:   123 ISIINQVIGWIYFVSWSISFYPQVITNWRRKSVVGLSFDFVALNLTGFVAYSVFNIGLLW 182

Query:   441 XXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
                I++QFF K     NPV  NDVFFS+HA  +TL+ + QC +YERGTQ VS  A   + 
Sbjct:   183 VPSIKEQFFLKYPNGVNPVDSNDVFFSLHAVALTLVVMVQCFLYERGTQHVSWPAISFLV 242

Query:   501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
               ++++   + L       W+ FL   S +KL +TLIKY PQAYMNF  KST GWSIGNV
Sbjct:   243 LSWVFVLVTMILAAVRVITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGNV 302

Query:   561 LLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVF---YCILKK 616
             LLDFTGG FS+LQM + + N    + T + G   K  L I  IFF    F   +C+ +K
Sbjct:   303 LLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGIFSIFFDIVFFIQHFCLYRK 359

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|F1RLI8 CTNS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 110/239 (46%), Positives = 145/239 (60%)

Query:   381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTXXXXXXXXXXX 440
             L + + +IGWIYF AW+ISFYPQ+ TN+++KSV+GL+FDF+ LNL+GF            
Sbjct:   123 LSIINQVIGWIYFVAWSISFYPQVITNWRRKSVVGLSFDFVALNLMGFVAYSVFNIGLLW 182

Query:   441 XXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
                I++QF  K     NPV  NDVFFS+HA  +TL+ + QC +YERG Q+VS  A   + 
Sbjct:   183 VPYIKEQFLLKYPNGVNPVVSNDVFFSLHAVALTLVVLVQCCLYERGNQRVSWPAISFLV 242

Query:   501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
               +L+    L +       W+ FL   S +KL +TLIKY PQAYMNF  KST GWSIGNV
Sbjct:   243 LSWLFTLTALIVAAVGSITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGNV 302

Query:   561 LLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVF---YCILKK 616
             LLDFTGG FS+LQM + + N    + T + G   K  L I  I F    F   +C+ +K
Sbjct:   303 LLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGIFSIIFDIVFFIQHFCLYRK 359

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|A7MB63 CTNS "Cystinosin" [Bos taurus (taxid:9913)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 109/239 (45%), Positives = 147/239 (61%)

Query:   381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTXXXXXXXXXXX 440
             + + + +IGWIYF AW++SFYPQ+ TN+++KSV+GL+FDF+ LNL+GF            
Sbjct:   123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query:   441 XXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
                I++QF  K     NPV  NDVFFS+HA  +TL+ I QCL+YERG+Q+VS  A   + 
Sbjct:   183 VPSIKEQFLLKYPNGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLV 242

Query:   501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
               +L+    L +       W+ FL   S +KL +TL+KY PQAYMNF  KST GWSIGNV
Sbjct:   243 LSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNV 302

Query:   561 LLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVF---YCILKK 616
             LLDFTGG FS+LQM + + N    + T + G   K  L I  I F    F   +C+ +K
Sbjct:   303 LLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRK 359

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1308466 Ctns "cystinosin, lysosomal cystine transporter" [Rattus norvegicus (taxid:10116)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 108/242 (44%), Positives = 144/242 (59%)

Query:   381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTXXXXXXXXXXX 440
             + + + +IGWIYF AW++SFYPQ+  N+++KSV+GL+FDFL LNL GF            
Sbjct:   123 VSVINQVIGWIYFMAWSVSFYPQVIQNWRRKSVVGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query:   441 XXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
                IQ++F  K     NPV +ND FFS+HA  +TL+ I QC +YERG Q+VS  +   + 
Sbjct:   183 VPYIQEEFLLKYPNGVNPVDINDAFFSLHAVALTLIVILQCCLYERGNQRVSRPSIGFLV 242

Query:   501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
               +L++   + +       W+ FL   S +KL ITLIKY PQAYMNF  KST GWSIG V
Sbjct:   243 LAWLFILVTMIVAAVGVTTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGV 302

Query:   561 LLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFF----YSSVFYCILKK 616
             LLDFTGG FS+LQM + + N    + T + G   K  L +  IFF    +   FY   KK
Sbjct:   303 LLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGVFTIFFDIVFFIQHFYLYRKK 360

Query:   617 LG 618
              G
Sbjct:   361 PG 362

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005770 "late endosome" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006749 "glutathione metabolic process" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0007616 "long-term memory" evidence=IEA;ISO

GO:0007625 "grooming behavior" evidence=IEA;ISO

GO:0007628 "adult walking behavior" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008542 "visual learning" evidence=IEA;ISO

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA;ISO

GO:0015811 "L-cystine transport" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=IEA;ISO

GO:0048058 "compound eye corneal lens development" evidence=IEA;ISO

GO:0050890 "cognition" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

UNIPROTKB|O60931 CTNS "Cystinosin" [Homo sapiens (taxid:9606)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 111/256 (43%), Positives = 149/256 (58%)

Query:   364 SNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGL 423
             SN     I   V +   + + + +IGWIYF AW+ISFYPQ+  N+++KSVIGL+FDF+ L
Sbjct:   106 SNQTGPRIRFLVIRSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVAL 165

Query:   424 NLIGFTXXXXXXXXXXXXXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLI 483
             NL GF               I++QF  K     NPV  NDVFFS+HA ++TL+ I QC +
Sbjct:   166 NLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDVFFSLHAVVLTLIIIVQCCL 225

Query:   484 YERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQA 543
             YERG Q+VS  A   +   +L+    + +       W+ FL   S +KL +TL+KY PQA
Sbjct:   226 YERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQA 285

Query:   544 YMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLI 603
             YMNF  KST GWSIGNVLLDFTGG FS+LQM + + N    + T + G   K  L +  I
Sbjct:   286 YMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGVFSI 343

Query:   604 FFYSSVF---YCILKK 616
              F    F   +C+ +K
Sbjct:   344 VFDVVFFIQHFCLYRK 359

GO:0016021 "integral to membrane" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IMP;NAS

GO:0015811 "L-cystine transport" evidence=IDA;IMP;NAS

GO:0007420 "brain development" evidence=IMP

GO:0050890 "cognition" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=IDA;NAS

GO:0005764 "lysosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0006749 "glutathione metabolic process" evidence=IMP

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:1932872 Ctns "cystinosis, nephropathic" [Mus musculus (taxid:10090)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 109/242 (45%), Positives = 143/242 (59%)

Query:   381 LGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTXXXXXXXXXXX 440
             + + + +IGWIYF AW++SFYPQ+  N+++KSVIGL+FDFL LNL GF            
Sbjct:   123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query:   441 XXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
                IQ++F  K     NPV  ND FFS+HA  +TL+ I QC +YERG Q+VS  +   + 
Sbjct:   183 VPYIQEEFLLKYPNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLV 242

Query:   501 AYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNV 560
               +L++   + +       W+ FL   S +KL ITLIKY PQAYMNF  KST GWSIG V
Sbjct:   243 LAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGV 302

Query:   561 LLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFF----YSSVFYCILKK 616
             LLDFTGG FS+LQM + + N    + T + G   K  L +  IFF    +   FY   KK
Sbjct:   303 LLDFTGGSFSLLQMFLQSYN--NDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360

Query:   617 LG 618
              G
Sbjct:   361 PG 362

GO:0003333 "amino acid transmembrane transport" evidence=IMP;IDA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006749 "glutathione metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0007616 "long-term memory" evidence=IMP

GO:0007625 "grooming behavior" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008542 "visual learning" evidence=IMP

GO:0015184 "L-cystine transmembrane transporter activity" evidence=ISO;IMP;IDA

GO:0015811 "L-cystine transport" evidence=ISO;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0048058 "compound eye corneal lens development" evidence=IMP

GO:0050890 "cognition" evidence=ISO

UNIPROTKB|A8WN56 ctns-1 "Cystinosin homolog" [Caenorhabditis briggsae (taxid:6238)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 95/210 (45%), Positives = 134/210 (63%)

Query:   373 VAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTXXX 432
             + V +   L +   I+GW YF+AW++SFYPQ+Y N+K+KSV+GLNFDFL LNL+GF    
Sbjct:   116 ITVIRSHWLAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYA 175

Query:   433 XXXXXXXXXXXIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVS 492
                        +++ +  +N  +  PV LNDV F++HA +   +TI QC+ YER  Q++S
Sbjct:   176 MFNLLMYYNSHVKNIYSMENPRSPPPVLLNDVVFAVHAFLACFVTILQCIFYERDQQRIS 235

Query:   493 IGARCLMCAYFLYLSGVLGLVL--FNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRK 550
                +C++    L   G + +V+   NK   +DF+   S +K+ +T  KY PQAY N+QRK
Sbjct:   236 --TKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRK 293

Query:   551 STSGWSIGNVLLDFTGGMFSILQMVILAIN 580
             ST GWSIGN+LLDFTGG   ILQMV+ AIN
Sbjct:   294 STVGWSIGNILLDFTGGSLDILQMVLQAIN 323

GO:0005764 "lysosome" evidence=ISS

GO:0006909 "phagocytosis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VCR7	CTNS_DROME	No assigned EC number	0.5165	0.2749	0.4307	yes	N/A
A7MB63	CTNS_BOVIN	No assigned EC number	0.515	0.2572	0.4359	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	622
TIGR00951	220	TIGR00951, 2A43, Lysosomal Cystine Transporter	1e-45
TIGR00951	220	TIGR00951, 2A43, Lysosomal Cystine Transporter	9e-39
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	9e-11
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	9e-11
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	9e-09
smart00679	32	smart00679, CTNS, Repeated motif present between t	1e-05
smart00679	32	smart00679, CTNS, Repeated motif present between t	4e-05
smart00679	32	smart00679, CTNS, Repeated motif present between t	4e-05
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	4e-04
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	0.002

>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter

 Score =  161 bits (408), Expect = 1e-45
 Identities = 86/229 (37%), Positives = 125/229 (54%), Gaps = 11/229 (4%)

Query: 383 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSS 442
           L S I+GW Y +AW+ISFYPQ+  N+++KS  GL+FDF+ LNL+GFT Y ++N       
Sbjct: 2   LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCW 61

Query: 443 LIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAY 502
            I ++F   +      V  NDVFF++HA ++  + + QC  YERG Q+VS      +   
Sbjct: 62  SITNEFPLSSPG----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVA 117

Query: 503 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLL 562
            L     L + L +    + F+   S +K+ +TL+KY PQA  N+  KST   SI  V L
Sbjct: 118 LLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFL 177

Query: 563 DFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFY 611
           DFTG    +LQ +  ++N  G  L    G+ V + L  N +F     FY
Sbjct: 178 DFTG----LLQRIFQSVNETGDPL--KAGLFVVSSL-FNGLFAAQVFFY 219

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 220

>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter

 Score =  141 bits (358), Expect = 9e-39
 Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 44/233 (18%)

Query: 123 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSS 182
           L S I+GW Y +AW+ISFYPQ+  N+++KS  GL+FDF+ LNL+GFT Y ++N       
Sbjct: 2   LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCW 61

Query: 183 LIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAY 242
            I ++F   +      V  NDVFF++HA +I  + + QC  YERG Q+VS      +   
Sbjct: 62  SITNEFPLSSPG----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVA 117

Query: 243 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVF 302
            L     L + L +    + F+   S +K+ +TL+KY PQ                    
Sbjct: 118 LLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ-------------------- 157

Query: 303 FSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMV 355
                               A  N+  KST   SI  V LDFTG +  I Q V
Sbjct: 158 --------------------AATNYHNKSTGQLSIITVFLDFTGLLQRIFQSV 190

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 220

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 57.2 bits (139), Expect = 9e-11
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSL 183
            S+++G+I    W +S+ PQ+  NY++KS  GL+  FL L L+G  LY LYN+      L
Sbjct: 1   LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Query: 184 I 184
           +
Sbjct: 61  L 61

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 57.2 bits (139), Expect = 9e-11
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 384 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSL 443
            S+++G+I    W +S+ PQ+  NY++KS  GL+  FL L L+G  LY LYN+      L
Sbjct: 1   LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Query: 444 I 444
           +
Sbjct: 61  L 61

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 51.8 bits (125), Expect = 9e-09
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 530 VKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 582
           + L + L+ YIPQ   N++RKST G SI  +LL   G +  +L  ++     +
Sbjct: 8   ISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 537 IKYIPQAYMNFQRKSTSGWSIGNVLLDFTGG 567
           +  +PQ   N++RKST G SI  VLL   G 
Sbjct: 1   VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 138 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT 169
           +S  PQ+  NY++KS  GL+  F+ L L+G  
Sbjct: 1   VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 398 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT 429
           +S  PQ+  NY++KS  GL+  F+ L L+G  
Sbjct: 1   VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 324 YMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 362
             N++RKST G SI  +LL   G +  +L  ++     +
Sbjct: 22  IKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 77  ASDIIGWIYFSAWTISFYPQLYTNYKKKS 105
            S+++G+I    W +S+ PQ+  NY++KS
Sbjct: 1   LSNVLGYISLVLWLVSYIPQIIKNYRRKS 29

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	622
KOG3145|consensus	372		100.0
KOG3145|consensus	372		100.0
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	100.0
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	99.98
KOG2913|consensus	260		99.94
KOG2913|consensus	260		99.84
KOG3211|consensus	230		99.2
PF04193	61	PQ-loop: PQ loop repeat	99.14
PF04193	61	PQ-loop: PQ loop repeat	99.1
smart00679	32	CTNS Repeated motif present between transmembrane	98.61
smart00679	32	CTNS Repeated motif present between transmembrane	98.56
KOG3211|consensus	230		97.48
PHA02246	192	hypothetical protein	96.65
COG4095	89	Uncharacterized conserved protein [Function unknow	95.83
COG4095	89	Uncharacterized conserved protein [Function unknow	95.65
KOG1623|consensus	243		95.51
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	95.47
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	94.75
PHA02246	192	hypothetical protein	92.56
PF00810	147	ER_lumen_recept: ER lumen protein retaining recept	86.64
KOG1623|consensus	243		82.12
KOG3106|consensus	212		80.03

>KOG3145|consensus

Probab=100.00  E-value=1.6e-55  Score=442.58  Aligned_cols=259  Identities=44%  Similarity=0.748  Sum_probs=228.0

Q ss_pred             cccccCCCCCceEEEEeecchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccc
Q psy10687        100 NYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYY  179 (622)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~  179 (622)
                      +-+....++.++|++|-+|.+++++++++||+|+++||+|||||+|.||||||++|+|+||+.+|+.|+.+|++||+++|
T Consensus        99 dg~~~~~~d~f~R~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly  178 (372)
T KOG3145|consen   99 DGSITDLEDAFARMTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLY  178 (372)
T ss_pred             cCCccccccceeEEEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHH
Confidence            33344577889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHHhheeEEEeecCCccccc-chhhhhhhhhhhhhceeeeeecccc
Q psy10687        180 SSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSI-GARCLMCAYFLYLSGVLGLVLFNKF  258 (622)
Q Consensus       180 ~~~~i~~~y~~~~~~~~~pvq~~dv~~a~~~~~~~~il~~Q~~~Y~~~~~r~s~-~~~~i~~~~~~~~~~~~~~~~~~~~  258 (622)
                      |.+.+++||.-++|.+.+||..||++||+|+++++++++.||+.|+|+.||+++ .+.++....++.++..+..+...++
T Consensus       179 ~~~~iq~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~  258 (372)
T KOG3145|consen  179 YCPKIQNQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVI  258 (372)
T ss_pred             hcHHhccceeccCCCCCCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999999999999999998 4666666555555555555566777


Q ss_pred             cccccccccCCceeeecccccCCcCcccccCCCCCCCCcccccccccchhhhhhhHHhhhhhhhhhhcccccccccceeh
Q psy10687        259 QWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIG  338 (622)
Q Consensus       259 ~w~~~l~~~s~ik~~~tliky~PQ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~rkst~G~sI~  338 (622)
                      +|+++++.++++|+++|++||+||                                        ++|||.||||.||+|+
T Consensus       259 ~wL~f~~~~syiKl~mTliKYiPQ----------------------------------------a~mN~tRKSt~gwsIg  298 (372)
T KOG3145|consen  259 RWLAFLNNLSYIKLAMTLIKYIPQ----------------------------------------AYMNFTRKSTVGWSIG  298 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhH----------------------------------------Hhhcceeccccccccc
Confidence            899999999999999999999999                                        8999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHhhhccCC-CCCCCCccccccchhhhhhhhhhHHHHHHHHHhhcccchhhhhhhccC
Q psy10687        339 NVLLDFTGGMFSILQMVILAINFVGS-NIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKS  412 (622)
Q Consensus       339 ~illd~~gG~lS~~Ql~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS  412 (622)
                      |++||++||++|++||+.++.|++++ ++-.+++|      .+++.++.++-.+        ++-|.+--|+||.
T Consensus       299 nIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~K------fGLg~vSi~Fdii--------Fm~QhyVly~~~~  359 (372)
T KOG3145|consen  299 NILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGK------FGLGLVSIFFDII--------FMMQHYVLYPRGH  359 (372)
T ss_pred             cEEEEecccHHHHHHHHHHHhccccHHHHhcCchh------hhhhhHHHHHHHH--------HHhhheeEecccc
Confidence            99999999999999999999887764 34566666      3555665555444        7778888888764

>KOG3145|consensus

Probab=100.00  E-value=7.4e-52  Score=416.17  Aligned_cols=249  Identities=44%  Similarity=0.766  Sum_probs=228.4

Q ss_pred             CCCCCccccccchhhhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchh
Q psy10687        366 IKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQ  445 (622)
Q Consensus       366 ~~~~~~k~~~~~~~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~  445 (622)
                      .+....|+++.++..+.+..+++||+|++.|++|+|||++.||||||++|||+||+.+++.|+..|+++|+..+|.|..+
T Consensus       105 ~~d~f~R~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq  184 (372)
T KOG3145|consen  105 LEDAFARMTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQ  184 (372)
T ss_pred             cccceeEEEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhc
Confidence            34456788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhCCCCCCccchhHHHHHHHHHHHHHHHhhhhhccCCCCccch-hHHHHHHHHHHHHHhhhhhhccCccchHHHH
Q psy10687        446 DQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSI-GARCLMCAYFLYLSGVLGLVLFNKFQWIDFL  524 (622)
Q Consensus       446 ~~y~~~~~~~l~pvq~~dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~-~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl  524 (622)
                      +||..++|.+.+||..||+++|+|+++++++++.||+.|+|..|++|+ .+.+++...++++++++.++....+.|++++
T Consensus       185 ~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~  264 (372)
T KOG3145|consen  185 NQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFL  264 (372)
T ss_pred             cceeccCCCCCCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999888988999999999999999999999999999999999999998 4666666667777777777766667799999


Q ss_pred             HHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeeccchhhh
Q psy10687        525 NQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIF  604 (622)
Q Consensus       525 ~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg~~~~~  604 (622)
                      +.++++|..++++||+||+++||+||||+||||++++||++||+++++|+++++.|.++|+.+  +|||+|++||.+++ 
T Consensus       265 ~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f--~gnp~KfGLg~vSi-  341 (372)
T KOG3145|consen  265 NNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTF--YGNPGKFGLGLVSI-  341 (372)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHH--hcCchhhhhhhHHH-
Confidence            999999999999999999999999999999999999999999999999999999999999997  79999999996655 


Q ss_pred             hhhhhh----hhhhhcc
Q psy10687        605 FYSSVF----YCILKKL  617 (622)
Q Consensus       605 ~~d~i~----~~~yr~~  617 (622)
                      +||.+|    ||+||+.
T Consensus       342 ~FdiiFm~QhyVly~~~  358 (372)
T KOG3145|consen  342 FFDIIFMMQHYVLYPRG  358 (372)
T ss_pred             HHHHHHHhhheeEeccc
Confidence            558885    6777743

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=100.00  E-value=4.9e-37  Score=308.32  Aligned_cols=211  Identities=38%  Similarity=0.609  Sum_probs=178.6

Q ss_pred             hhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCccch
Q psy10687        383 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLN  462 (622)
Q Consensus       383 ~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pvq~~  462 (622)
                      .+|+++||+++++|+++++||++||+||||++|+|++|+.++++|+++|.++|+...++|..+++|..+++    +|+.+
T Consensus         2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~----~v~~e   77 (220)
T TIGR00951         2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSP----GVTQN   77 (220)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccC----CCcHH
Confidence            46889999999999999999999999999999999999999999999999999999888888888877764    37889


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhcchhh
Q psy10687        463 DVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ  542 (622)
Q Consensus       463 dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vkyiPQ  542 (622)
                      |+++++|+++++++++.|+.+|++++|++|+.+.+.....+....+...........|+++++.++++|..++++||+||
T Consensus        78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQ  157 (220)
T TIGR00951        78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ  157 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999998999988875543322221111111111245789999999999999999999999


Q ss_pred             hhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeeccchhhhhhhhhh
Q psy10687        543 AYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVF  610 (622)
Q Consensus       543 I~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg~~~~~~~d~i~  610 (622)
                      +++|||||||+|||+.++++|++|    .+|+++++.++.        ||++|++++ ....+||.++
T Consensus       158 i~~Ny~~ksT~glSi~~i~Ld~~G----~lqri~ts~~~~--------gd~~~l~~~-~~s~~~n~i~  212 (220)
T TIGR00951       158 AATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVNET--------GDPLKAGLF-VVSSLFNGLF  212 (220)
T ss_pred             HHHHHhcCCCCcCCHHHHHHHHHH----HHHHHHHHHHHc--------CCHHHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999    677777765322        999999999 5555668885

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=99.98  E-value=1.4e-33  Score=283.38  Aligned_cols=190  Identities=41%  Similarity=0.659  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCcchh
Q psy10687        123 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLN  202 (622)
Q Consensus       123 ~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pvq~~  202 (622)
                      .+|.++||++++||+++++||+++||||||++|+|++|+.+|++|+.+|.+||+..++++.+++||..+++    +|+.+
T Consensus         2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~----~v~~e   77 (220)
T TIGR00951         2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSP----GVTQN   77 (220)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccC----CCcHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999877763    48999


Q ss_pred             hHHHHHHHHHHHHHhheeEEEeecCCcccccchhhhhhhhhhhhhceeeeeecccccccccccccCCceeeecccccCCc
Q psy10687        203 DVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ  282 (622)
Q Consensus       203 dv~~a~~~~~~~~il~~Q~~~Y~~~~~r~s~~~~~i~~~~~~~~~~~~~~~~~~~~~w~~~l~~~s~ik~~~tliky~PQ  282 (622)
                      |+++|+|+++++++++.|+.+|++++||+++++.......+................|+++++.++++|+.++++||+||
T Consensus        78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQ  157 (220)
T TIGR00951        78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ  157 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999998887664432211111000000111345789999999999999999999999


Q ss_pred             CcccccCCCCCCCCcccccccccchhhhhhhHHhhhhhhhhhhcccccccccceehhhhhhhcccchhhhHHHHHhhh
Q psy10687        283 DQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAIN  360 (622)
Q Consensus       283 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~rkst~G~sI~~illd~~gG~lS~~Ql~~~~~~  360 (622)
                                                              +++|||||||.|||+.++++|++|    .+|++.++.+
T Consensus       158 ----------------------------------------i~~Ny~~ksT~glSi~~i~Ld~~G----~lqri~ts~~  191 (220)
T TIGR00951       158 ----------------------------------------AATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVN  191 (220)
T ss_pred             ----------------------------------------HHHHHhcCCCCcCCHHHHHHHHHH----HHHHHHHHHH
Confidence                                                    899999999999999999999999    6688888764

>KOG2913|consensus

Probab=99.94  E-value=2.3e-27  Score=242.34  Aligned_cols=246  Identities=19%  Similarity=0.184  Sum_probs=165.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCC
Q psy10687        119 FRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNP  198 (622)
Q Consensus       119 ~~l~~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~p  198 (622)
                      ..++.+|.++|.++++||+++..||+++|||+||++|+|+.|++.|++||    ++|+.+   +.+         +.++|
T Consensus         3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligd----i~nl~g---~~l---------~~~~~   66 (260)
T KOG2913|consen    3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGD----IFNLVG---FFL---------QPLGS   66 (260)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHcc----HHHHHH---HHh---------cccch
Confidence            46889999999999999999999999999999999999999999999999    888873   444         33444


Q ss_pred             cchhhHHHHHHHHHHHHHhheeEEEeecCCc-ccccchhhhhhhhhhhhhceeeeeecccccccccccccCCceeeeccc
Q psy10687        199 VQLNDVFFSIHATIITLLTIFQCLIYERGTQ-KVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLI  277 (622)
Q Consensus       199 vq~~dv~~a~~~~~~~~il~~Q~~~Y~~~~~-r~s~~~~~i~~~~~~~~~~~~~~~~~~~~~w~~~l~~~s~ik~~~tli  277 (622)
                      +|   .+.+.++++.|++++.|++||....+ |.-.+.  ....   .      ......                  ..
T Consensus        67 ~~---~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~--~s~~---s------~~~~~~------------------~~  114 (260)
T KOG2913|consen   67 TL---KVQAVYYTLADSVLFVQCLYYGNIYPREPLLPV--PSFR---S------LLGGLE------------------AL  114 (260)
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHhcchhcccCccccc--cchh---h------hhcchH------------------HH
Confidence            44   99999999999999999999976554 211000  0000   0      000000                  00


Q ss_pred             ccCCcCcccccCCCCCCCCcccccccccchhhhhhhHHhhhhhhhhhhcccccccccceehhhhhhhcccchhhhHHHHH
Q psy10687        278 KYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVIL  357 (622)
Q Consensus       278 ky~PQ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~rkst~G~sI~~illd~~gG~lS~~Ql~~~  357 (622)
                         ++                                       .....+.++.++-+....-..+..+    +.+..  
T Consensus       115 ---~~---------------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~--  146 (260)
T KOG2913|consen  115 ---LI---------------------------------------LSIKLFSPRFVKWPVVALGFLAIVF----LICGA--  146 (260)
T ss_pred             ---HH---------------------------------------HHhhccCcchhhccchhhhhHHHHH----HHHHH--
Confidence               00                                       0001111111111110000000000    00111  


Q ss_pred             hhhccCCCCCCCCccccccchhhhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhh
Q psy10687        358 AINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLG  437 (622)
Q Consensus       358 ~~~~~~~~~~~~~~k~~~~~~~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~  437 (622)
                      +.....   ..  .+.   .....+..+.++||++.++|..+|+|||++|+||||+||+|+.+|+++..||.+|..+   
T Consensus       147 ~~~~~~---~~--~~~---~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s---  215 (260)
T KOG2913|consen  147 AYESLL---RA--VRV---NGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS---  215 (260)
T ss_pred             Hhhccc---cc--ccc---chhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc---
Confidence            000000   00  000   0034456788999999999999999999999999999999999999999999998765   


Q ss_pred             hccccchhhhhHhhhCCCCCCccchhHHHHHHHHHHHHHHHhhhhhccCCC
Q psy10687        438 YYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGT  488 (622)
Q Consensus       438 ~~~~~~~~~~y~~~~~~~l~pvq~~dv~~sl~~~~ld~iil~Q~~~Y~r~~  488 (622)
                               +|..++.||+        .++..+..+|+.++.|+++|++.+
T Consensus       216 ---------~~~~~n~~w~--------~~~~~~~~~D~~~~~q~~~~~~~~  249 (260)
T KOG2913|consen  216 ---------SYLVTNLPWL--------VDSKGTIYLDIFIFLQFFNYRASK  249 (260)
T ss_pred             ---------cccccCCccc--------ccCCcchhHHHHHHHHHHHhhccc
Confidence                     3556677886        488889999999999999988654

>KOG2913|consensus

Probab=99.84  E-value=6.2e-21  Score=195.24  Aligned_cols=195  Identities=21%  Similarity=0.170  Sum_probs=136.2

Q ss_pred             hhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCc
Q psy10687        380 RLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPV  459 (622)
Q Consensus       380 ~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pv  459 (622)
                      .++..+.++|.++++||+++.+||+++|||+||+||+|+.|++.|++|+++..++....               + ..|+
T Consensus         4 ~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~---------------~-~~~~   67 (260)
T KOG2913|consen    4 INDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ---------------P-LGST   67 (260)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc---------------c-cchh
Confidence            35567899999999999999999999999999999999999999999999654433321               1 1223


Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhhccCCCC---------ccchhHH--HHH------------------HH--HHHHHHh
Q psy10687        460 QLNDVFFSIHATIVTLLTIFQCLIYERGTQ---------KVSIGAR--CLM------------------CA--YFLYLSG  508 (622)
Q Consensus       460 q~~dv~~sl~~~~ld~iil~Q~~~Y~r~~q---------~~S~~~~--~l~------------------~~--~~~~~~i  508 (622)
                      +   .+.+.+.++.|++++.|++||+....         ..+..+-  ..+                  .+  .+++...
T Consensus        68 ~---~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  144 (260)
T KOG2913|consen   68 L---KVQAVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLIC  144 (260)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHH
Confidence            2   56688889999999999999975433         1111110  000                  00  0001011


Q ss_pred             hhhhhc-----cCc-cchHHHHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccC
Q psy10687        509 VLGLVL-----FNK-FQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV  582 (622)
Q Consensus       509 ~~~~~~-----~~~-~~~l~vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~  582 (622)
                      ......     ... ........++|++++.++...|+|||++||+||||+|+|..+|.+...||.+|..|    .....
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s----~~~~~  220 (260)
T KOG2913|consen  145 GAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS----SYLVT  220 (260)
T ss_pred             HHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc----ccccc
Confidence            110000     011 11223667889999999999999999999999999999999999999999999999    22223


Q ss_pred             CceeEEeecceeeeecc
Q psy10687        583 GSKLTCLGGVVVKTLLD  599 (622)
Q Consensus       583 ~w~~i~~~g~~~~l~lg  599 (622)
                      +-+++  .|.-....+|
T Consensus       221 n~~w~--~~~~~~~~~D  235 (260)
T KOG2913|consen  221 NLPWL--VDSKGTIYLD  235 (260)
T ss_pred             CCccc--ccCCcchhHH
Confidence            33333  2566666666

>KOG3211|consensus

Probab=99.20  E-value=1.5e-10  Score=113.16  Aligned_cols=178  Identities=19%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             hhhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCC
Q psy10687        379 FRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNP  458 (622)
Q Consensus       379 ~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~p  458 (622)
                      .....++..+||........-++|||.|.-.+||++|+|.--++++++|++-...|+...                +.++
T Consensus        25 cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~----------------g~pF   88 (230)
T KOG3211|consen   25 CLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTS----------------GYPF   88 (230)
T ss_pred             chHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhc----------------CCCc
Confidence            567789999999999999999999999999999999999999999999988433333211                2222


Q ss_pred             ccchhHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhc
Q psy10687        459 VQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIK  538 (622)
Q Consensus       459 vq~~dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vk  538 (622)
                      -.+.   -...-++.+.+++.+.++|+-  |......  + .+..  +.+...++.  ......++.........+.+++
T Consensus        89 ss~g---E~~fLl~Q~vili~~if~f~~--~~~~~v~--~-l~~~--~~v~~~~~s--k~~p~~~~~L~~~~~l~i~v~s  156 (230)
T KOG3211|consen   89 SSYG---EYPFLLLQAVILILCIFHFSG--QTVTVVQ--F-LGYI--ALVVSVLAS--KALPLWIITLAQNLCLPIVVVS  156 (230)
T ss_pred             hhHH---HHHHHHHHHHHHHHHHHHhcc--ceeehhh--H-HHHH--HHHHHHHHH--hhhhHHHHHHHHhcCchhhhHH
Confidence            1111   122335678888888888882  2211100  0 1111  111111111  1122334444455556788899


Q ss_pred             chhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeE
Q psy10687        539 YIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLT  587 (622)
Q Consensus       539 yiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i  587 (622)
                      |+||+..|||.|+|+.+|....+|.+.|..+++..-.-   +.+|...+
T Consensus       157 r~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq---~t~d~~ml  202 (230)
T KOG3211|consen  157 RLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQ---ETGDFLML  202 (230)
T ss_pred             HHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHH---hcCChhhH
Confidence            99999999999999999999999999999999876553   34555543

>PF04193 PQ-loop: PQ loop repeat

Probab=99.14  E-value=5.4e-11  Score=95.98  Aligned_cols=54  Identities=48%  Similarity=0.731  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhc
Q psy10687        124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLG  177 (622)
Q Consensus       124 ~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~  177 (622)
                      ++.++|+++.++|.++++||+++|||+||++|+|+.++.+|++|+.+..++.+.
T Consensus         1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~   54 (61)
T PF04193_consen    1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSIL   54 (61)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999888777665

>PF04193 PQ-loop: PQ loop repeat

Probab=99.10  E-value=8.2e-11  Score=94.90  Aligned_cols=55  Identities=47%  Similarity=0.707  Sum_probs=50.8

Q ss_pred             hhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhh
Q psy10687        384 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGY  438 (622)
Q Consensus       384 is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~  438 (622)
                      ++.++||++.++|.++++||+++|||+||++|+|+.+++++++|+++..++.+..
T Consensus         1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~   55 (61)
T PF04193_consen    1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS   55 (61)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            3678999999999999999999999999999999999999999999988876643

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=98.61  E-value=1.8e-08  Score=71.02  Aligned_cols=31  Identities=42%  Similarity=0.664  Sum_probs=29.7

Q ss_pred             hhhhhhHHHHHhcCCcccccchhhHHHHhhh
Q psy10687        138 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGF  168 (622)
Q Consensus       138 vs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~  168 (622)
                      ++++||+++|||+||++|+|+.|+++|+.|+
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~   31 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD   31 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcC
Confidence            4789999999999999999999999999997

Function unknown, but likely to be associated with the glycosylation machinery.

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=98.56  E-value=2.9e-08  Score=69.91  Aligned_cols=32  Identities=41%  Similarity=0.637  Sum_probs=29.9

Q ss_pred             hcccchhhhhhhccCccCcchhHHHHHHhhhh
Q psy10687        398 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT  429 (622)
Q Consensus       398 ~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~  429 (622)
                      ++++||+++|||+||++|+|+.|+++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            47899999999999999999999999999974

Function unknown, but likely to be associated with the glycosylation machinery.

>KOG3211|consensus

Probab=97.48  E-value=0.00053  Score=67.92  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCc
Q psy10687        120 RLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPV  199 (622)
Q Consensus       120 ~l~~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pv  199 (622)
                      +...+|..+||.-+..-.....|||.+--..||++|+|.-=+.+-++|+..-..|+..                .+.++-
T Consensus        26 l~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~----------------~g~pFs   89 (230)
T KOG3211|consen   26 LKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYT----------------SGYPFS   89 (230)
T ss_pred             hHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhh----------------cCCCch
Confidence            6889999999999999999999999999999999999999999999999544444432                223333


Q ss_pred             chhhHHHHHHHHHHHHHhheeEEEee
Q psy10687        200 QLNDVFFSIHATIITLLTIFQCLIYE  225 (622)
Q Consensus       200 q~~dv~~a~~~~~~~~il~~Q~~~Y~  225 (622)
                      .+-+..|   -.+-+++++.+.++|+
T Consensus        90 s~gE~~f---Ll~Q~vili~~if~f~  112 (230)
T KOG3211|consen   90 SYGEYPF---LLLQAVILILCIFHFS  112 (230)
T ss_pred             hHHHHHH---HHHHHHHHHHHHHHhc
Confidence            3222222   2345667777766665

>PHA02246 hypothetical protein

Probab=96.65  E-value=0.015  Score=55.39  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=86.2

Q ss_pred             hhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHH--HhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCccc
Q psy10687        384 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLN--LIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQL  461 (622)
Q Consensus       384 is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~--~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pvq~  461 (622)
                      ++-.+...|+.+-....+||.-.-.|.|+++|.|-.|..+-  ..|-.+   +|+..-           ....|.     
T Consensus         4 ~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSf---yNlL~T-----------~~~~fq-----   64 (192)
T PHA02246          4 LSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISF---YNLLLT-----------DASVFQ-----   64 (192)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHH---HHHHhc-----------CCceEE-----
Confidence            34556677888888899999999999999999998765544  344443   444321           011121     


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhcchh
Q psy10687        462 NDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIP  541 (622)
Q Consensus       462 ~dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vkyiP  541 (622)
                         +.|.+.-+.--++..-...||++.-- +.+...++      .+..+.+ .    +..++-...+.   ..-+.+|+|
T Consensus        65 ---i~svg~nl~lgivcLlv~~~rkkd~f-~~~fiiif------SLllfll-~----~~~evtQtVat---~tIiLaYi~  126 (192)
T PHA02246         65 ---IVSVGLNLTLGIVCLLVASYRKKDYF-SIPFIIVF------SLLLFLL-S----DFTALTQTVAT---ITIILAYVT  126 (192)
T ss_pred             ---Eeeeehhhhhhhhheeeehhhccccc-cchHHHHH------HHHHHHH-h----hhHHHHHHHHH---HHHHHHHHH
Confidence               11211111111111222346654321 11111111      1111111 1    12223333343   344678999


Q ss_pred             hhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhh
Q psy10687        542 QAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVI  576 (622)
Q Consensus       542 QI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l  576 (622)
                      ||..=||.|+.||.+..+.++-..|=.+-..++++
T Consensus       127 QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L  161 (192)
T PHA02246        127 QITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL  161 (192)
T ss_pred             HHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999888766665555555554

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.037  Score=48.06  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhc
Q psy10687        124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLG  177 (622)
Q Consensus       124 ~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~  177 (622)
                      .-.+.||+....=.++++||.++-+|.|++.++|+.++..-.+|.++..+|-..
T Consensus         4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL   57 (89)
T COG4095           4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL   57 (89)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999998777777554

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.04  Score=47.83  Aligned_cols=51  Identities=25%  Similarity=0.372  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhh
Q psy10687        386 DIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNL  436 (622)
Q Consensus       386 ~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l  436 (622)
                      .+.||+....=.++++||.+|-+|.|++.++|+.++..-..|-.+..+|-.
T Consensus         6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI   56 (89)
T COG4095           6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI   56 (89)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH
Confidence            467899888899999999999999999999999999998888887665543

>KOG1623|consensus

Probab=95.51  E-value=0.046  Score=56.21  Aligned_cols=184  Identities=15%  Similarity=0.073  Sum_probs=90.5

Q ss_pred             HHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCccchhHHHHHH
Q psy10687        390 WIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIH  469 (622)
Q Consensus       390 ~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pvq~~dv~~sl~  469 (622)
                      -+..++-..+-+|=.++.+||||+||.|..-+++.+++.....-|-+.     -.+ +++.-      .      +-+ .
T Consensus        14 ~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~-----~~~-d~lli------t------IN~-~   74 (243)
T KOG1623|consen   14 NIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLL-----KVH-DYLLI------T------ING-I   74 (243)
T ss_pred             HHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhh-----ccC-ceEEE------E------Eeh-h
Confidence            334445557888999999999999999999999999988865433211     010 11111      1      111 2


Q ss_pred             HHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhcchhhhhhhhhc
Q psy10687        470 ATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQR  549 (622)
Q Consensus       470 ~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vkyiPQI~~Nyrr  549 (622)
                      ++++.++-+.=|++|.++++....... +..+..++..+.+....+....-.+.++.+...-.++...+-+--+-+--|+
T Consensus        75 G~~ie~~Yi~~f~~ya~~k~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIkt  153 (243)
T KOG1623|consen   75 GLVIETVYISIFLYYAPKKKTVKIVLA-LVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKT  153 (243)
T ss_pred             cHHHHHHHHHHHheecCchheeEeeeh-HHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheec
Confidence            334556666667888766542222111 1111111111111111211111112222222222233334444445567788


Q ss_pred             CccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeecc
Q psy10687        550 KSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLD  599 (622)
Q Consensus       550 KSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg  599 (622)
                      ||||.++...-+.    +.+...|-.+.+.--+|.-..  --|...+.+|
T Consensus       154 kSvE~mPf~Ls~a----~fl~a~~W~lYGlli~D~~Ia--ipN~iG~~l~  197 (243)
T KOG1623|consen  154 KSVEYMPFPLSFA----LFLVAVQWLLYGLLIKDFFIA--IPNVLGFLLG  197 (243)
T ss_pred             CceeeechHHHHH----HHHHHHHHHHHHHHhcCeEEE--cccHHHHHHH
Confidence            9999999888442    233334444444333443332  1344334444

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=95.47  E-value=0.0067  Score=52.24  Aligned_cols=69  Identities=19%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             HHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeecc
Q psy10687        525 NQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLD  599 (622)
Q Consensus       525 ~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg  599 (622)
                      ++++.+..++...+-+||+++.+|+||++++|+..+++.+.++.+=+.=    +.-.+||..+  ..|..-+.++
T Consensus         4 g~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~Y----G~l~~d~~i~--~~N~~g~~~~   72 (87)
T PF03083_consen    4 GILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIY----GILINDWPII--VPNVFGLVLS   72 (87)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhh----hhhcCCeeEE--eeHHHHHHHH
Confidence            3455556677778889999999999999999999999888887765542    2223588555  4666656665

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=94.75  E-value=0.083  Score=45.42  Aligned_cols=81  Identities=17%  Similarity=0.266  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCcchhhHHHH
Q psy10687        128 IGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFS  207 (622)
Q Consensus       128 lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pvq~~dv~~a  207 (622)
                      +|-+..++=..+..||+++.+|+||++++|+...+..+++..+-..|-+.      .          +..++    +...
T Consensus         6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l------~----------~d~~i----~~~N   65 (87)
T PF03083_consen    6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL------I----------NDWPI----IVPN   65 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh------c----------CCeeE----EeeH
Confidence            34455556677889999999999999999999998888877555444433      1          12232    3344


Q ss_pred             HHHHHHHHHhheeEEEeecCC
Q psy10687        208 IHATIITLLTIFQCLIYERGT  228 (622)
Q Consensus       208 ~~~~~~~~il~~Q~~~Y~~~~  228 (622)
                      .-++++..+.+.-++.|.+++
T Consensus        66 ~~g~~~~~~~~~~~~~y~~~~   86 (87)
T PF03083_consen   66 VFGLVLSIIYLVVYYIYPSKK   86 (87)
T ss_pred             HHHHHHHHHHHhheEEeCCCC
Confidence            568888888888888887654

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>PHA02246 hypothetical protein

Probab=92.56  E-value=0.28  Score=46.95  Aligned_cols=81  Identities=19%  Similarity=0.234  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCcchhh
Q psy10687        124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLND  203 (622)
Q Consensus       124 ~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pvq~~d  203 (622)
                      +++..|.+++   ..+..||+++=||.|+.||.++.+.++--+|-.|. ++|..+               ++.++   +-
T Consensus       111 vtQtVat~tI---iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L-~~~m~L---------------thv~~---hI  168 (192)
T PHA02246        111 LTQTVATITI---ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASL-IVSMVL---------------THTYV---HI  168 (192)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHH-HHHHhh---------------hCCcc---ee
Confidence            4455555444   46889999999999999999999999988887665 344442               23233   11


Q ss_pred             HHHHHHHHHHHHHhheeEEEeec
Q psy10687        204 VFFSIHATIITLLTIFQCLIYER  226 (622)
Q Consensus       204 v~~a~~~~~~~~il~~Q~~~Y~~  226 (622)
                      ++.-.-..++-++...|-=+|+|
T Consensus       169 iiTEf~N~iLiLiCy~qA~~Ysk  191 (192)
T PHA02246        169 IATEFVNFVLILICYLQANYYSR  191 (192)
T ss_pred             eHHHHHHHHHHHHHHHHHhhhcC
Confidence            34444555666666667666765

>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway

Probab=86.64  E-value=8.7  Score=36.80  Aligned_cols=51  Identities=14%  Similarity=0.082  Sum_probs=41.7

Q ss_pred             HHHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHH
Q psy10687        522 DFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSIL  572 (622)
Q Consensus       522 ~vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sll  572 (622)
                      .+.++++..+..+..++-+||.++-.|++.+|.+.-..++.-...=+++++
T Consensus        91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~  141 (147)
T PF00810_consen   91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL  141 (147)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence            455666677779999999999999999999999998888877666666554

The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane

>KOG1623|consensus

Probab=82.12  E-value=3  Score=43.20  Aligned_cols=53  Identities=11%  Similarity=0.099  Sum_probs=42.3

Q ss_pred             hHHHHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHH
Q psy10687        520 WIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSIL  572 (622)
Q Consensus       520 ~l~vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sll  572 (622)
                      +..+++..+.+-....+.+=+|-.++.+|||||||.|..-+.+.+.++.+.+-
T Consensus         5 ~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~   57 (243)
T KOG1623|consen    5 LLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLY   57 (243)
T ss_pred             HHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHH
Confidence            34455666666667777888899999999999999999999998888776543

>KOG3106|consensus

Probab=80.03  E-value=11  Score=37.75  Aligned_cols=65  Identities=8%  Similarity=-0.060  Sum_probs=45.9

Q ss_pred             HHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeE
Q psy10687        523 FLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLT  587 (622)
Q Consensus       523 vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i  587 (622)
                      +..+++..+.-+..++-+||..+-=|.+.+|-+--.-++.--+--.+|+.-=+.+-....-|..+
T Consensus       115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~~~~~i  179 (212)
T KOG3106|consen  115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTEDFWDPI  179 (212)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence            34455566678999999999999999999999887777765555555655555554444445544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	622
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 83/570 (14%), Positives = 170/570 (29%), Gaps = 164/570 (28%)

Query: 116 EKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKK--KSVIGLNFDFLGLNLIGFTLYSL 173
           E D  +     + G      WT+    +     +K  + V+ +N+ FL          S 
Sbjct: 50  EIDHIIMSKDAVSG-TLRLFWTLLSKQE--EMVQKFVEEVLRINYKFL---------MSP 97

Query: 174 YNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATII-TLLTIFQCLIYERGTQKVS 232
                   S++   + E+     N  Q   VF   + + +   L + Q L+  R  + V 
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 233 I------GARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFF 286
           I      G   +  A  + LS  +   +  K  W++  N  S   +   L K + Q    
Sbjct: 155 IDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---I 209

Query: 287 EKNGTNSNPVQLNDVFFSIHATIITLLTIFQ------CL----------IYEAYMNFQRK 330
           + N T S     +++   IH+    L  + +      CL           + A  N   K
Sbjct: 210 DPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCK 267

Query: 331 ---STSGWSIGNVL---------LDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKD 378
              +T    + + L         LD      +  ++  L + ++  + +P D+   V   
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTT 325

Query: 379 FRLGLASDIIG---------WIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLG------- 422
               L+  II          W  +         +     K  ++I  + + L        
Sbjct: 326 NPRRLS--IIAESIRDGLATWDNW---------KHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 423 -LNLIGF---------TLYSL-YNLGYYSSSLIQDQFFEKNGTNSNP----VQLNDVFFS 467
              L  F          L  + +++      ++ ++  + +     P    + +  ++  
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 468 IHATIVTLLTIFQCLI--YERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLN 525
           +   +     + + ++  Y                             +   F   D + 
Sbjct: 435 LKVKLENEYALHRSIVDHYN----------------------------IPKTFDSDDLIP 466

Query: 526 QCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFT-GGMFSILQMVILAINFVGS 584
              D        +Y    Y            IG+ L +       ++ +MV L   F+  
Sbjct: 467 PYLD--------QYF---Y----------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 585 KL------TCLGGVVVKTLLDINLIFFYSS 608
           K+          G ++ TL  +    FY  
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLK---FYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 69/260 (26%)

Query: 14  LQMVILAINFDD----WDGFL-IDRTKLGLGLFSVSFDILF---MIQHYVLYSIKPSDIH 65
            ++ I+A +  D    WD +  ++  KL   +   S ++L      + +   S+ P   H
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 66  V-------------------AVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSI 106
           +                    V K  +  L   +      S  +I   P +Y   K K  
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISI---PSIYLELKVKLE 440

Query: 107 KPSDIHVAVEKDFRLGLASD--------IIGWIYF----------SAWTISFYPQLYTNY 148
               +H ++   + +    D        +  + Y               ++ +  ++   
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497

Query: 149 KKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPV---QLNDV- 204
                  L+F FL   +      +    G   ++L Q +F++    +++P     +N + 
Sbjct: 498 -------LDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 205 -FFSIHATIITLLTIFQCLI 223
            F       + + + +  L+
Sbjct: 550 DFLPKIEENL-ICSKYTDLL 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00