Psyllid ID: psy10696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccccEEccccccccccccHHHHHHHHccccccccccccccccccccccEEEEcccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHcccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccccccEEcccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
MFSVIILLISSTvlgigsstYWSLGVAYLddnvrknkMPVVLGVMSSAWDVGTLASFLVSsylggkghktKWVALGSIIMSIGCFLRtytncscipngmatqgacpadcgshfMWFIFILCLLNFFsatgragntiiqfrcvspedkslsiGITEALGcglafipgpiiygall
Flexible Loop (DISEMBL)
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Low Complexity Region (SEG)
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Disordered region (IsUnstruct)
**SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA**
Disordered Region (DISOPRED)
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNV**NKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Disordered Region (DISEMBL)
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Disordered Region (DISPRO)
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9Y6L6	691	Solute carrier organic an	yes	N/A	0.494	0.124	0.357	3e-06
Q9JHI3	682	Solute carrier organic an	yes	N/A	0.482	0.123	0.329	3e-06
Q9JJL3	689	Solute carrier organic an	yes	N/A	0.494	0.124	0.329	4e-06
Q92959	643	Solute carrier organic an	no	N/A	0.477	0.129	0.317	4e-06
Q8BXB6	683	Solute carrier organic an	no	N/A	0.482	0.122	0.329	5e-06
Q99J94	670	Solute carrier organic an	no	N/A	0.494	0.128	0.340	6e-06
Q9QZX8	687	Solute carrier organic an	no	N/A	0.494	0.125	0.333	7e-06
Q9EPT5	643	Solute carrier organic an	no	N/A	0.494	0.133	0.306	1e-05
O88397	670	Solute carrier organic an	no	N/A	0.494	0.128	0.318	2e-05
Q00910	644	Solute carrier organic an	no	N/A	0.494	0.133	0.306	2e-05

>sp|Q9Y6L6|SO1B1_HUMAN Solute carrier organic anion transporter family member 1B1 OS=Homo sapiens GN=SLCO1B1 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 89  YTNCSCIP-------NGMATQGACPAD--CGSHFMWFIFILCLLNFFSATGRAGNTIIQF 139
           + NCSC+        N  A  G CP D  C   F +F+ I  L  FFSA G   + ++  
Sbjct: 501 FYNCSCLEVTGLQNRNYSAHLGECPRDDACTRKFYFFVAIQVLNLFFSALGGTSHVMLIV 560

Query: 140 RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           + V PE KSL++G    +   L  I  PI +GAL+
Sbjct: 561 KIVQPELKSLALGFHSMVIRALGGILAPIYFGALI 595

Mediates the Na(+)-independent uptake of organic anions such as pravastatin, taurocholate, methotrexate, dehydroepiandrosterone sulfate, 17-beta-glucuronosyl estradiol, estrone sulfate, prostaglandin E2, thromboxane B2, leukotriene C3, leukotriene E4, thyroxine and triiodothyronine. Involved in the clearance of bile acids and organic anions from the liver.
Homo sapiens (taxid: 9606)

>sp|Q9JHI3|SO2B1_RAT Solute carrier organic anion transporter family member 2B1 OS=Rattus norvegicus GN=Slco2b1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 89  YTNCSCIP-NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDK 147
           YTNCSC+  NG  + G+C + C    + FI ++ L    ++     + ++  R V  EDK
Sbjct: 524 YTNCSCVAGNGTISAGSCESACSRLVLPFILLISLGAAVASITHTPSFMLILRGVKKEDK 583

Query: 148 SLSIGITEALGCGLAFIPGPIIYGA 172
           +L++G+   L   LA++P P+I+G+
Sbjct: 584 TLAVGMQFMLLRVLAWMPSPVIHGS 608

Mediates the Na(+)-independent transport of organic anions such as taurocholate, the prostaglandins PGD2, PGE1, PGE2, leukotriene C4, thromboxane B2 and iloprost.

Rattus norvegicus (taxid: 10116)

>sp|Q9JJL3|SO1B2_MOUSE Solute carrier organic anion transporter family member 1B2 OS=Mus musculus GN=Slco1b2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 89  YTNCSCIP-------NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTIIQFR 140
           + +CSC+        N  A  G CP D C + + ++I    +++FF+A G     +I  R
Sbjct: 498 FYDCSCVSGSGFQKGNHSARLGECPRDKCKTKYYFYITFQVIISFFTALGSTSLMLILIR 557

Query: 141 CVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
            V PE KSL +G    +   L  I  P+ YGAL+
Sbjct: 558 SVQPELKSLGMGFHSLVVRTLGGILAPVYYGALI 591

Mediates the Na(+)-independent uptake of organic anions such as taurochlate, bromosulfophthalein and steroid conjugates such as estrone-3-sulfate, 17-beta-glucuronosyl estradiol, dehydroepiandrosterone sulfate and prostaglandin E2.

Mus musculus (taxid: 10090)

>sp|Q92959|SO2A1_HUMAN Solute carrier organic anion transporter family member 2A1 OS=Homo sapiens GN=SLCO2A1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 89  YTNCSCIPNGMAT--QGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPED 146
           Y NCSC+  G A+   G+CP  C    +  IF++  ++  +        ++  R V+ E+
Sbjct: 489 YLNCSCVTGGSASAKTGSCPVPCAHFLLPAIFLISFVSLIACISHNPLYMMVLRVVNQEE 548

Query: 147 KSLSIGITEALGCGLAFIPGPIIYG 171
           KS +IG+   L   LA++P P +YG
Sbjct: 549 KSFAIGVQFLLMRLLAWLPSPALYG 573

May mediate the release of newly synthesized prostaglandins from cells, the transepithelial transport of prostaglandins, and the clearance of prostaglandins from the circulation. Transports PGD2, as well as PGE1, PGE2 and PGF2A.

Homo sapiens (taxid: 9606)

>sp|Q8BXB6|SO2B1_MOUSE Solute carrier organic anion transporter family member 2B1 OS=Mus musculus GN=Slco2b1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 89  YTNCSCIP-NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDK 147
           YTNCSC+  NG    G+C + C    + FI +  L    ++     + ++  R V  EDK
Sbjct: 525 YTNCSCVAGNGTVPAGSCESACSRLVLPFIVLFSLGAGLASITHTPSFMLILRGVKKEDK 584

Query: 148 SLSIGITEALGCGLAFIPGPIIYGA 172
           +L++G+   L   LA++P P+I+G+
Sbjct: 585 TLAVGMQFMLLRVLAWMPSPVIHGS 609

Mediates the Na(+)-independent transport of organic anions such as taurocholate, the prostaglandins PGD2, PGE1, PGE2, leukotriene C4, thromboxane B2 and iloprost.

Mus musculus (taxid: 10090)

>sp|Q99J94|SO1A6_MOUSE Solute carrier organic anion transporter family member 1A6 OS=Mus musculus GN=Slco1a6 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 89  YTNCSCIP---NGMATQGACPA--DCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVS 143
           + NCSCI    N  A  G C    DC +   +F+ I     FF +       ++  RC+ 
Sbjct: 481 FQNCSCIRSSGNSSAVLGLCKKGPDCANKLQYFLIITVFCCFFYSLATIPGYMVFLRCMK 540

Query: 144 PEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
            E+KSL IG+        A IP PI +GAL+
Sbjct: 541 SEEKSLGIGLQAFFMRLFAGIPAPIYFGALI 571

May mediate the Na(+)-independent transport of organic anions.

Mus musculus (taxid: 10090)

>sp|Q9QZX8|SO1B2_RAT Solute carrier organic anion transporter family member 1B2 OS=Rattus norvegicus GN=Slco1b2 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 89  YTNCSCIPN---GMATQGACPA-DCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSP 144
           + +CSCI N     A  G CP   C +++ ++I +   ++FF+A G     +I  + V P
Sbjct: 500 FYDCSCISNSGNNSAHLGECPRYKCKTNYYFYIILQVTVSFFTAMGSPSLILILMKSVQP 559

Query: 145 EDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           E KSL++G    +   L  I  PI YGA +
Sbjct: 560 ELKSLAMGFHSLIIRALGGILAPIYYGAFI 589

Mediates the Na(+)-independent uptake of organic anions such as taurochlate, bromosulfophthalein and steroid conjugates such as estrone-3-sulfate, 17-beta-glucuronosyl estradiol, dehydroepiandrosterone sulfate and prostaglandin E2.

Rattus norvegicus (taxid: 10116)

>sp|Q9EPT5|SO2A1_MOUSE Solute carrier organic anion transporter family member 2A1 OS=Mus musculus GN=Slco2a1 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 89  YTNCSCIPNGMAT--QGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPED 146
           Y NCSC+  G A+   G+CP  C    +  IF++  +   +        ++  R V+ ++
Sbjct: 488 YLNCSCVTGGSASAKTGSCPTSCAQLLLPSIFLISFVALIACVSHNPLYMMVLRVVNQDE 547

Query: 147 KSLSIGITEALGCGLAFIPGPIIYGALL 174
           KS +IG+   L   LA++P P +YG L+
Sbjct: 548 KSFAIGVQFLLMRLLAWLPSPSLYGLLI 575

May mediate the release of newly synthesized prostaglandins from cells, the transepithelial transport of prostaglandins, and the clearance of prostaglandins from the circulation. Transports PGD2, as well as PGE1, PGE2 and PGF2A.

Mus musculus (taxid: 10090)

>sp|O88397|SO1A5_RAT Solute carrier organic anion transporter family member 1A5 OS=Rattus norvegicus GN=Slco1a5 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 89  YTNCSCIP---NGMATQGACPA--DCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVS 143
           + NCSCI    N  A  G C    +C +   +F+ +  + +F  +       ++  RC+ 
Sbjct: 481 FQNCSCIRSSGNSSAVLGLCKKGPECANKLQYFLIMSVIGSFIYSITAIPGYMVLLRCIK 540

Query: 144 PEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           PE+KSL IG+        A IP PI +GAL+
Sbjct: 541 PEEKSLGIGLHAFCTRVFAGIPAPIYFGALI 571

Mediates the Na(+)-independent transport of organic anions such as taurocholate and thyroid hormones.

Rattus norvegicus (taxid: 10116)

>sp|Q00910|SO2A1_RAT Solute carrier organic anion transporter family member 2A1 OS=Rattus norvegicus GN=Slco2a1 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 89  YTNCSCIPNGMAT--QGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPED 146
           Y NCSC+  G A+   G+CP  C    +  IF++      +        ++  R V+ ++
Sbjct: 489 YLNCSCVSGGSASAKTGSCPTSCAQLLLPSIFLISFAALIACISHNPLYMMVLRVVNQDE 548

Query: 147 KSLSIGITEALGCGLAFIPGPIIYGALL 174
           KS +IG+   L   LA++P P +YG L+
Sbjct: 549 KSFAIGVQFLLMRLLAWLPAPSLYGLLI 576

May mediate the release of newly synthesized prostaglandins from cells, the transepithelial transport of prostaglandins, and the clearance of prostaglandins from the circulation. Transports PGD2, as well as PGE1, PGE2 and PGF2A.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
328710400	645	PREDICTED: solute carrier organic anion	0.511	0.137	0.522	2e-20
158296207	687	AGAP006637-PB [Anopheles gambiae str. PE	0.494	0.125	0.414	8e-15
195027459	649	GH20434 [Drosophila grimshawi] gi|193902	0.494	0.132	0.4	4e-14
195402609	272	GJ14982 [Drosophila virilis] gi|19414076	0.494	0.316	0.410	9e-14
195154411	457	GL16935 [Drosophila persimilis] gi|19411	0.5	0.190	0.373	1e-13
242006912	607	conserved hypothetical protein [Pediculu	0.494	0.141	0.443	2e-13
198460227	667	GA17416 [Drosophila pseudoobscura pseudo	0.5	0.130	0.373	2e-13
195119832	649	GI19617 [Drosophila mojavensis] gi|19390	0.494	0.132	0.4	2e-13
195426312	670	GK20833 [Drosophila willistoni] gi|19415	0.494	0.128	0.373	4e-13
195346678	428	GM15650 [Drosophila sechellia] gi|194135	0.494	0.200	0.368	4e-13

>gi|328710400|ref|XP_001949701.2| PREDICTED: solute carrier organic anion transporter family member 4C1-like [Acyrthosiphon pisum]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 68/90 (75%), Gaps = 1/90 (1%)

Query: 86  LRTYTNCSCIPN-GMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSP 144
           L+ Y+NC+CI   G AT+G CP  CG+ F+ F+ ++ ++ F S+TGR+GNTIIQFRCV  
Sbjct: 487 LKAYSNCTCIGGLGTATEGVCPVACGNDFIIFLALMGVMRFLSSTGRSGNTIIQFRCVKQ 546

Query: 145 EDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           EDKSLS+G +E +   +AF+PGPI+YG ++
Sbjct: 547 EDKSLSLGFSEVVMALVAFMPGPILYGTIV 576

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296207|ref|XP_001237849.2| AGAP006637-PB [Anopheles gambiae str. PEST] gi|157016401|gb|EAU76635.2| AGAP006637-PB [Anopheles gambiae str. PEST]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 13/99 (13%)

Query: 89  YTNCSCIPN-------------GMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNT 135
           YTNCSCI +             G AT G+CP DCG+ F +F+  LCL  F   T  A N 
Sbjct: 495 YTNCSCIASPTDDLDANFTSSYGSATPGSCPVDCGTPFYFFLMCLCLNKFIGGTESAANF 554

Query: 136 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           +I  RCV P DK++S+G + A+    +F+P PI++GA++
Sbjct: 555 LIGLRCVEPRDKAISMGFSMAINTLFSFLPAPIVFGAII 593

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195027459|ref|XP_001986600.1| GH20434 [Drosophila grimshawi] gi|193902600|gb|EDW01467.1| GH20434 [Drosophila grimshawi]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 9/95 (9%)

Query: 89  YTNCSCI---------PNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF 139
           YT+C CI          +  A QG+CP DC + F+ F+ ++C L F  A+GR  N ++  
Sbjct: 486 YTDCKCIGALDFANATESQYARQGSCPVDCYNQFLIFLGVMCFLKFIGASGRTANLLLAL 545

Query: 140 RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           RCVS EDKS ++G+   + C ++FIP PI++G +L
Sbjct: 546 RCVSFEDKSFALGLGNVVVCLVSFIPSPILFGWIL 580

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402609|ref|XP_002059897.1| GJ14982 [Drosophila virilis] gi|194140763|gb|EDW57234.1| GJ14982 [Drosophila virilis]

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 9/95 (9%)

Query: 89  YTNCSCI---------PNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF 139
           YT C CI          +  A QG CPADC + F+ F+ ++C L F  ++GR  N ++  
Sbjct: 86  YTGCKCIGASDIANATEHQFARQGPCPADCYNQFLIFLGVMCFLKFVGSSGRTSNLLLGL 145

Query: 140 RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           RCVS  DKSL++G++  +   LAFIP P+++GA+L
Sbjct: 146 RCVSSADKSLALGLSNMIVAILAFIPSPLVFGAIL 180

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195154411|ref|XP_002018115.1| GL16935 [Drosophila persimilis] gi|194113911|gb|EDW35954.1| GL16935 [Drosophila persimilis]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 12/99 (12%)

Query: 88  TYTNCSCIP------------NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNT 135
           +Y+ C CIP            N  A+ G CP DC   F+ ++ ++C+L F  ATGR+ + 
Sbjct: 275 SYSGCKCIPSSLAPNQTFPDENQFASDGVCPVDCYDQFLIYLAVMCILKFVGATGRSTDL 334

Query: 136 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           ++  RCV  EDK++++GI   L   ++FIP PI++G LL
Sbjct: 335 LLVLRCVPEEDKTIALGIGSMLFSVMSFIPSPIVFGWLL 373

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006912|ref|XP_002424286.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507686|gb|EEB11548.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 87  RTYTNCSCIPN--GMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSP 144
           RTY+NCSC+P    +  QG C  +C   F+ F+ + CL+     +GR  N +I +R V P
Sbjct: 485 RTYSNCSCLPEPTDIVKQGPCKINCLYPFVIFVAVQCLIQMIGCSGRITNVLINYRTVEP 544

Query: 145 EDKSLSIGITEALGCGLAFIPGPIIYGA 172
            DK L+ GI+  +   LAFIPGPIIYG 
Sbjct: 545 RDKPLAQGISLFMISLLAFIPGPIIYGK 572

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198460227|ref|XP_001361660.2| GA17416 [Drosophila pseudoobscura pseudoobscura] gi|198136942|gb|EAL26239.2| GA17416 [Drosophila pseudoobscura pseudoobscura]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 12/99 (12%)

Query: 88  TYTNCSCIP------------NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNT 135
           +Y+ C CIP            N  A+ G CP DC   F+ ++ ++C+L F  ATGR+ + 
Sbjct: 485 SYSGCKCIPSSLAPNQTFPDENQFASDGVCPVDCYDQFLIYLAVMCILKFVGATGRSTDL 544

Query: 136 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           ++  RCV  EDK++++GI   L   ++FIP PI++G LL
Sbjct: 545 LLVLRCVPEEDKTIALGIGSMLFSVMSFIPSPIVFGWLL 583

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195119832|ref|XP_002004433.1| GI19617 [Drosophila mojavensis] gi|193909501|gb|EDW08368.1| GI19617 [Drosophila mojavensis]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 89  YTNCSCI---------PNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF 139
           YT C CI             A QG CP DC   F+ F+ ++CLL F  A+GR  N ++  
Sbjct: 486 YTGCKCIGTLDIANVTEYQYARQGPCPVDCYKQFLIFLGVMCLLKFIGASGRTANLLLAL 545

Query: 140 RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           RCVS EDKS ++G+   +   ++FIP PI++G +L
Sbjct: 546 RCVSSEDKSFALGLGNVIASIVSFIPSPILFGWIL 580

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195426312|ref|XP_002061282.1| GK20833 [Drosophila willistoni] gi|194157367|gb|EDW72268.1| GK20833 [Drosophila willistoni]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 13/99 (13%)

Query: 89  YTNCSCIPN-------------GMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNT 135
           YT+C C+P+               A  G CP DC   F+ F+ ++CLL F  +TGR  N 
Sbjct: 491 YTDCKCMPSVAIDIKDAGDPQLPFAVDGPCPVDCQRQFLIFMVVMCLLKFIGSTGRVTNL 550

Query: 136 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           ++  RCV PEDK+  +G    +    A IP PII+G +L
Sbjct: 551 LLALRCVPPEDKTFGLGFGHVVVSIFALIPSPIIFGWIL 589

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195346678|ref|XP_002039884.1| GM15650 [Drosophila sechellia] gi|194135233|gb|EDW56749.1| GM15650 [Drosophila sechellia]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 17/103 (16%)

Query: 89  YTNCSCIPN-----------------GMATQGACPADCGSHFMWFIFILCLLNFFSATGR 131
           YT C C+ N                  +A  GACP DCG  F+ F+ ++C L F  ATGR
Sbjct: 255 YTGCRCMGNLSSIISLSNVTSLASQSQIAMDGACPVDCGKQFLIFLAVMCFLKFVGATGR 314

Query: 132 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 174
           + N ++  RCV   DK+ S+G +  +   L FIP PI++G +L
Sbjct: 315 SSNLLLALRCVPSRDKTFSLGFSSMVYAVLTFIPSPIVFGWML 357

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
FB|FBgn0034716	789	Oatp58Dc "Organic anion transp	0.477	0.105	0.397	3.9e-24
FB|FBgn0034715	722	Oatp58Db "Organic anion transp	0.436	0.105	0.434	5.1e-24
FB|FBgn0032433	745	Oatp33Ea "Organic anion transp	0.413	0.096	0.375	1.7e-20
UNIPROTKB|Q9UIG8	710	SLCO3A1 "Solute carrier organi	0.517	0.126	0.354	1.6e-19
UNIPROTKB|F1SCI1	692	SLCO3A1 "Uncharacterized prote	0.517	0.130	0.354	1.9e-19
UNIPROTKB|F1NSG0	709	SLCO3A1 "Uncharacterized prote	0.517	0.126	0.354	2.1e-19
UNIPROTKB|Q8HYW2	710	SLCO3A1 "Solute carrier organi	0.517	0.126	0.364	2.1e-19
MGI|MGI:1351867	710	Slco3a1 "solute carrier organi	0.517	0.126	0.354	2.1e-19
RGD|620227	710	Slco3a1 "solute carrier organi	0.517	0.126	0.354	2.1e-19
UNIPROTKB|Q99N02	710	Slco3a1 "Solute carrier organi	0.517	0.126	0.354	2.1e-19

FB|FBgn0034716 Oatp58Dc "Organic anion transporting polypeptide 58Dc" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
 Identities = 33/83 (39%), Positives = 50/83 (60%)

Query:    89 YTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKS 148
             ++    + NG A  GACP +C + F+ F+ ++C L F  A+GRA N ++  RCV  +DK+
Sbjct:   621 HSQLEALANGQAMPGACPVNCWTQFVAFLAVMCCLKFVGASGRASNFLVSVRCVPEKDKT 680

Query:   149 LSIGITEALGCGLAFIPGPIIYG 171
              ++G    L   LAFIP PI +G
Sbjct:   681 AAMGFGMTLCSMLAFIPSPIFFG 703

GO:0015711 "organic anion transport" evidence=ISS

GO:0015347 "sodium-independent organic anion transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0031427 "response to methotrexate" evidence=IEP

FB|FBgn0034715 Oatp58Db "Organic anion transporting polypeptide 58Db" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 5.1e-24, Sum P(3) = 5.1e-24
 Identities = 33/76 (43%), Positives = 48/76 (63%)

Query:    99 MATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALG 158
             +A  GACP DC   F+ F+ ++C L F  ATGR+ N ++  RCV  +DK+ S+G    + 
Sbjct:   561 IAMDGACPVDCNKQFLIFLAVMCFLKFVGATGRSSNLLLALRCVPSKDKTFSLGFGSMVY 620

Query:   159 CGLAFIPGPIIYGALL 174
               LAFIP PI++G +L
Sbjct:   621 SVLAFIPSPIVFGWML 636

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015711 "organic anion transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0032433 Oatp33Ea "Organic anion transporting polypeptide 33Ea" [Drosophila melanogaster (taxid:7227)]

 Score = 141 (54.7 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query:   103 GACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLA 162
             G C  +C   F  F     ++++F ++GR GN ++ +R V+ EDKS + G+   +   LA
Sbjct:   588 GICTKNCNWSFWAFSITSMIVSWFGSSGRVGNVLVNYRAVAHEDKSFAQGLALMMISLLA 647

Query:   163 FIPGPIIYGALL 174
              IPGPII+G L+
Sbjct:   648 LIPGPIIFGRLI 659

GO:0005215 "transporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015711 "organic anion transport" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9UIG8 SLCO3A1 "Solute carrier organic anion transporter family member 3A1" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     T C+C   +P  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   500 GCNSTNLTGCACLTTVPAENATVVPGKCPSPGCQEAFLTFLCVMCICSLIGAMAQTPSVI 559

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   560 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 595

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0043252 "sodium-independent organic anion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1SCI1 SLCO3A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     T C+C   +P  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   500 GCNSTNLTGCACLTTVPPENATVVPGKCPSPGCQEAFLTFLCVMCVCSMIGAMAQTPSVI 559

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   560 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 595

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1NSG0 SLCO3A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     + CSC   +P  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   499 GCSSTNLSGCSCLSSVPAENATVVPGKCPSPGCEEAFLTFLCVMCVCSMIGAMAQTPSVI 558

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   559 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 594

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8HYW2 SLCO3A1 "Solute carrier organic anion transporter family member 3A1" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 35/96 (36%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     T C+C   IP  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   500 GCNSTNLTGCACLMTIPPENATVIPGKCPSPGCQEAFLTFLCVMCVCSMIGAMAQTPSVI 559

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   560 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 595

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

MGI|MGI:1351867 Slco3a1 "solute carrier organic anion transporter family, member 3a1" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     T C+C   +P  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   500 GCNSTNLTGCACLTTVPPENASVVPGKCPSPGCQEAFLTFLCVMCVCSLIGAMAQTPSVI 559

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   560 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 595

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=ISO

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISO

GO:0009925 "basal plasma membrane" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0015198 "oligopeptide transporter activity" evidence=ISO

GO:0015711 "organic anion transport" evidence=ISO

GO:0015732 "prostaglandin transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

RGD|620227 Slco3a1 "solute carrier organic anion transporter family, member 3a1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     T C+C   +P  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   500 GCNSTNLTGCACLTTVPPENATVVPGKCPSPGCQEAFLTFLCVMCVCSLIGAMAQTPSVI 559

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   560 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 595

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015732 "prostaglandin transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q99N02 Slco3a1 "Solute carrier organic anion transporter family member 3A1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:    83 GCFLRTYTNCSC---IP--NGMATQGACPAD-CGSHFMWFIFILCLLNFFSATGRAGNTI 136
             GC     T C+C   +P  N     G CP+  C   F+ F+ ++C+ +   A  +  + I
Sbjct:   500 GCNSTNLTGCACLTTVPPENATVVPGKCPSPGCQEAFLTFLCVMCVCSLIGAMAQTPSVI 559

Query:   137 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 172
             I  R VSPE KS ++G+   L   L FIP P+I+GA
Sbjct:   560 ILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGA 595

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	1e-17
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	2e-10
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	1e-06
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	5e-05
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	6e-05

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 34/90 (37%), Positives = 52/90 (57%)

Query: 84  CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVS 143
                  NCS   +  A++G CP+DC + F++F+ ++ +L+F          +I  RCV 
Sbjct: 465 SCSTWSNNCSSGNSHSASKGYCPSDCCTQFLYFLILMAILSFIGFLSAIPLYMIVLRCVP 524

Query: 144 PEDKSLSIGITEALGCGLAFIPGPIIYGAL 173
           PE+KSL++G+   L   L FIP PII+GAL
Sbjct: 525 PEEKSLALGVQWLLIRLLGFIPAPIIFGAL 554

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 89  YTNCSCIP---NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPE 145
           YTNCSC+    N  A +G C   C +  ++F+ +   L+F +        ++  R V+PE
Sbjct: 491 YTNCSCVQTPGNSSAKKGLCNPSCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPE 550

Query: 146 DKSLSIGITEALGCGLAFIPGPIIYGALL 174
           ++SL+IG+          IP PI++G L+
Sbjct: 551 ERSLAIGLQWLCMRVFGTIPAPILFGLLI 579

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 32/44 (72%)

Query: 43 GVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL 86
          G++SS++D+G L   +  SY GG+GH+ +W+ +G ++M++G  L
Sbjct: 41 GIISSSYDIGNLLLIIFVSYFGGRGHRPRWIGIGGLLMALGSLL 84

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 5   IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYL 63
           ++L +   + GIG++  ++LG++Y+DDNV+    P+ LG++ +    G    FL+ S+ 
Sbjct: 140 LLLFVGQLLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFC 198

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 16/58 (27%), Positives = 34/58 (58%)

Query: 5   IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY 62
           ++ L+S  + GIG++  + LG++Y+DD  +    P+ +G++ S    G    +L+ S+
Sbjct: 173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF 230

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG3626|consensus	735		99.97
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.96
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.95
KOG3626|consensus	735		99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.89
TIGR00805	633	oat sodium-independent organic anion transporter.	99.79
KOG1330|consensus	493		98.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.82
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.81
PRK11663	434	regulatory protein UhpC; Provisional	96.71
PRK05122	399	major facilitator superfamily transporter; Provisi	96.64
PRK10054	395	putative transporter; Provisional	96.63
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.48
KOG1330|consensus	493		96.45
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.45
TIGR00891	405	2A0112 putative sialic acid transporter.	96.34
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.32
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.26
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.19
PRK10091	382	MFS transport protein AraJ; Provisional	96.18
PRK03699	394	putative transporter; Provisional	96.14
PRK03545	390	putative arabinose transporter; Provisional	96.11
PRK09705	393	cynX putative cyanate transporter; Provisional	96.11
PRK03633	381	putative MFS family transporter protein; Provision	96.07
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.99
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	95.98
PRK12382	392	putative transporter; Provisional	95.97
TIGR00900	365	2A0121 H+ Antiporter protein.	95.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.83
TIGR00895	398	2A0115 benzoate transport.	95.73
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.71
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.66
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	95.62
TIGR00893	399	2A0114 d-galactonate transporter.	95.58
TIGR00898	505	2A0119 cation transport protein.	95.56
TIGR00900	365	2A0121 H+ Antiporter protein.	95.49
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.41
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.4
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.25
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	95.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	95.12
PRK03893	496	putative sialic acid transporter; Provisional	95.08
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.05
PRK10489	417	enterobactin exporter EntS; Provisional	94.89
PRK10489	417	enterobactin exporter EntS; Provisional	94.87
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	94.8
TIGR00892	455	2A0113 monocarboxylate transporter 1.	94.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	94.71
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	94.65
PRK10473	392	multidrug efflux system protein MdtL; Provisional	94.64
PRK10077	479	xylE D-xylose transporter XylE; Provisional	94.52
PRK11195	393	lysophospholipid transporter LplT; Provisional	94.38
PRK09874	408	drug efflux system protein MdtG; Provisional	94.25
PRK14995	495	methyl viologen resistance protein SmvA; Provision	94.17
PRK10504	471	putative transporter; Provisional	94.13
TIGR00891	405	2A0112 putative sialic acid transporter.	94.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	94.03
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	93.98
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	93.91
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	93.83
TIGR00893	399	2A0114 d-galactonate transporter.	93.7
KOG2325|consensus	488		93.67
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	93.4
TIGR00895	398	2A0115 benzoate transport.	93.3
PRK12307	426	putative sialic acid transporter; Provisional	92.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	92.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	92.36
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	92.3
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	92.16
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	91.99
TIGR00897	402	2A0118 polyol permease family. This family of prot	91.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	91.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	91.67
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	91.66
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	91.65
PRK10133	438	L-fucose transporter; Provisional	91.58
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	91.58
TIGR00892	455	2A0113 monocarboxylate transporter 1.	91.42
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	91.36
TIGR00901	356	2A0125 AmpG-related permease.	91.34
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	91.14
PRK11043	401	putative transporter; Provisional	91.05
TIGR00901	356	2A0125 AmpG-related permease.	90.99
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	90.96
PRK10504	471	putative transporter; Provisional	90.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	90.83
PRK15011	393	sugar efflux transporter B; Provisional	90.55
TIGR00896	355	CynX cyanate transporter. This family of proteins	90.52
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	90.45
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	90.29
PRK09528	420	lacY galactoside permease; Reviewed	90.27
PRK11652	394	emrD multidrug resistance protein D; Provisional	90.26
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	90.25
PRK15403	413	multidrug efflux system protein MdtM; Provisional	90.22
PRK11902	402	ampG muropeptide transporter; Reviewed	90.15
PRK10406	432	alpha-ketoglutarate transporter; Provisional	90.09
KOG3764|consensus	464		89.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	89.64
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	89.54
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	89.51
PRK15075	434	citrate-proton symporter; Provisional	89.32
PRK09952	438	shikimate transporter; Provisional	89.23
PRK09874	408	drug efflux system protein MdtG; Provisional	89.01
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	88.99
PRK09952	438	shikimate transporter; Provisional	88.97
PRK03893	496	putative sialic acid transporter; Provisional	88.9
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.73
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	88.68
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	88.65
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	88.63
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	88.53
KOG2533|consensus	495		88.41
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	88.13
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	88.13
PRK11646	400	multidrug resistance protein MdtH; Provisional	87.9
PRK10642	490	proline/glycine betaine transporter; Provisional	87.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	87.29
PRK03699	394	putative transporter; Provisional	87.2
PLN00028	476	nitrate transmembrane transporter; Provisional	86.59
PRK10406	432	alpha-ketoglutarate transporter; Provisional	86.5
PRK03545	390	putative arabinose transporter; Provisional	85.74
KOG0254|consensus	513		84.65
PRK15462	493	dipeptide/tripeptide permease D; Provisional	84.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	84.13
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	83.71
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	83.1
PRK10642	490	proline/glycine betaine transporter; Provisional	82.99
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	82.13
PRK12382	392	putative transporter; Provisional	81.84
PRK12307	426	putative sialic acid transporter; Provisional	81.67
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	80.83
PRK15075	434	citrate-proton symporter; Provisional	80.55
KOG2532|consensus	466		80.07

>KOG3626|consensus

Probab=99.97  E-value=3.7e-32  Score=245.39  Aligned_cols=173  Identities=36%  Similarity=0.751  Sum_probs=151.6

Q ss_pred             hhHHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccC-----C-C------CCc
Q psy10696          2 FSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLG-----G-K------GHK   69 (174)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g-----~-~------~~~   69 (174)
                      .+|.+|+++|++.|+|.+++++++++|||||.|+.+.|.|+|++.+...+||++|++++|++.     - .      .+|
T Consensus       235 ~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~D  314 (735)
T KOG3626|consen  235 YPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTD  314 (735)
T ss_pred             hhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999762     1 1      589


Q ss_pred             ceeee---ehhhhhhhhcccccc---------------------------------------------------------
Q psy10696         70 TKWVA---LGSIIMSIGCFLRTY---------------------------------------------------------   89 (174)
Q Consensus        70 prwig---~g~l~~~~g~~l~~l---------------------------------------------------------   89 (174)
                      |||+|   +|+++.+.-.++.+.                                                         
T Consensus       315 PrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if  394 (735)
T KOG3626|consen  315 PRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIF  394 (735)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchH
Confidence            99998   899998875554110                                                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy10696         90 --------------------------------------------------------------------------------   89 (174)
Q Consensus        90 --------------------------------------------------------------------------------   89 (174)
                                                                                                      
T Consensus       395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~  474 (735)
T KOG3626|consen  395 MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS  474 (735)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy10696         90 --------------------------------------------------------------------------------   89 (174)
Q Consensus        90 --------------------------------------------------------------------------------   89 (174)
                                                                                                      
T Consensus       475 l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~  554 (735)
T KOG3626|consen  475 LLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGN  554 (735)
T ss_pred             HHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCc
Confidence                                                                                            


Q ss_pred             ---cccccCC-----CCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhh
Q psy10696         90 ---TNCSCIP-----NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGL  161 (174)
Q Consensus        90 ---~~c~c~~-----~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rll  161 (174)
                         +||+|.+     ++.+++|.|+.+|.+.+..|+.++++..++.+++++|.+.+.+|+|+||+|++++|++++++|+|
T Consensus       555 ~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irll  634 (735)
T KOG3626|consen  555 TIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLL  634 (735)
T ss_pred             eeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHH
Confidence               0245543     22566788999987777889999999999999999999999999999999999999999999999


Q ss_pred             ccCcchhhhhccC
Q psy10696        162 AFIPGPIIYGALL  174 (174)
Q Consensus       162 g~IP~Pi~fG~~i  174 (174)
                      |+||+||+|||+|
T Consensus       635 g~IPsPIifG~~I  647 (735)
T KOG3626|consen  635 GFIPSPIIFGAVI  647 (735)
T ss_pred             hcCCchHhhhhhH
Confidence            9999999999987

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.96  E-value=1e-30  Score=232.47  Aligned_cols=155  Identities=23%  Similarity=0.417  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      ++++|+..++| +..++|+.   +.++++||||+++| ++|++.++|||++++..++++|+|+|+|||||+|+|.+++++
T Consensus         5 l~~~~~~~~~q-~~~~g~~~---~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    5 LVFLCLLGLFQ-MMVSGYVN---SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHH-HHHHHHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            56789999999 55888777   55568899999998 999999999999999999999999999999999999999999


Q ss_pred             hcccccccccccCCC-----------CccccCCC------------CCC--c-cchhHHHHHHHHHHHHHhhcCccCcee
Q psy10696         83 GCFLRTYTNCSCIPN-----------GMATQGAC------------PAD--C-GSHFMWFIFILCLLNFFSATGRAGNTI  136 (174)
Q Consensus        83 g~~l~~l~~c~c~~~-----------~~~~~~~C------------~~~--C-~~~~~~f~~lf~~~q~l~g~g~tP~~~  136 (174)
                      |++++++||....+.           .....+.|            +..  + ++..+.|+.+|+++|++.|+|++|+|+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            999999987432110           01122334            111  1 122455778899999999999999999


Q ss_pred             EEee----ecCCCCchhHHHHHHHHHHhhcc
Q psy10696        137 IQFR----CVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus       137 lgl~----~V~~~~sslylGi~~~~~rllg~  163 (174)
                      +|++    ||+++++|+|+|+.++ ++++|.
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~-~~~lGP  190 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYA-MSILGP  190 (539)
T ss_dssp             -------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhH-HhhccH
Confidence            9998    5889999999999987 444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.95  E-value=3.8e-30  Score=228.82  Aligned_cols=172  Identities=35%  Similarity=0.745  Sum_probs=3.0

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCC---------------CC
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGG---------------KG   67 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~---------------~~   67 (174)
                      .+.+|+++|+++|+|.+++|+++++|||||+|+.+.+.|+|++.+...+||++|+++.+++-.               +.
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p  219 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP  219 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence            467899999999999999999999999999999998889999999999999999999996621               24


Q ss_pred             Ccceeee---ehhhhhhhhcccccc-------------------------------------------------------
Q psy10696         68 HKTKWVA---LGSIIMSIGCFLRTY-------------------------------------------------------   89 (174)
Q Consensus        68 ~~prwig---~g~l~~~~g~~l~~l-------------------------------------------------------   89 (174)
                      +||||+|   +|+++.+...++.++                                                       
T Consensus       220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~  299 (539)
T PF03137_consen  220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALK  299 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHH
Confidence            7999998   899988887665331                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy10696         90 --------------------------------------------------------------------------------   89 (174)
Q Consensus        90 --------------------------------------------------------------------------------   89 (174)
                                                                                                      
T Consensus       300 ~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~  379 (539)
T PF03137_consen  300 RLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKF  379 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------c------------ccccCCC-----CccccCCCCCCccchhHHHHHHHH
Q psy10696         90 -------------------------------T------------NCSCIPN-----GMATQGACPADCGSHFMWFIFILC  121 (174)
Q Consensus        90 -------------------------------~------------~c~c~~~-----~~~~~~~C~~~C~~~~~~f~~lf~  121 (174)
                                                     +            .+.|++.     +++++|.|+++|.+++..|+.+++
T Consensus       380 ~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~  459 (539)
T PF03137_consen  380 CIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLF  459 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHH
Confidence                                           0            0122111     134578898887776778888889


Q ss_pred             HHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhccC
Q psy10696        122 LLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL  174 (174)
Q Consensus       122 ~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~i  174 (174)
                      +..++.+++.+|.+.+.+|+|+++||++++|+++++.|++|+|||||+||++|
T Consensus       460 ~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~ii  512 (539)
T PF03137_consen  460 ILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAII  512 (539)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999986

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626|consensus

Probab=99.94  E-value=5.4e-28  Score=218.49  Aligned_cols=158  Identities=19%  Similarity=0.406  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      ++.+++..+.||+.. +|++   +.|+++||||++++ +.|+|.+.||+|+++..++++|+|+|+|||||||+|.+++++
T Consensus        99 l~~l~~~~~~q~l~~-~y~~---s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYV-GYFN---SVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHHHhhh-hhhh---hhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            567888999999966 6666   66778899999997 999999999999999999999999999999999999999999


Q ss_pred             hcccccccccccC---------------CCC-------ccccCCCC---CCcc---chhHHHHHHHHHHHHHhhcCccCc
Q psy10696         83 GCFLRTYTNCSCI---------------PNG-------MATQGACP---ADCG---SHFMWFIFILCLLNFFSATGRAGN  134 (174)
Q Consensus        83 g~~l~~l~~c~c~---------------~~~-------~~~~~~C~---~~C~---~~~~~f~~lf~~~q~l~g~g~tP~  134 (174)
                      |+++.++||....               ...       ......|.   ++|+   +....++.+|+++|++.|+|++|.
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            9999999863110               000       01123443   2232   223345667889999999999999


Q ss_pred             eeEEeee----cCCCCchhHHHHHHHHHHhhccCcc
Q psy10696        135 TIIQFRC----VSPEDKSLSIGITEALGCGLAFIPG  166 (174)
Q Consensus       135 ~~lgl~~----V~~~~sslylGi~~~~~rllg~IP~  166 (174)
                      +++|++|    |+++++|+|+|+.++ +|+||.+.|
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~-~~~lGPaiG  289 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYS-MAILGPAIG  289 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHH-HHHhhhHHH
Confidence            9999985    778999999999996 677665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.89  E-value=4.8e-23  Score=186.48  Aligned_cols=74  Identities=30%  Similarity=0.619  Sum_probs=68.4

Q ss_pred             ccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhccC
Q psy10696        101 TQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL  174 (174)
Q Consensus       101 ~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~i  174 (174)
                      ++|.|+++|++.+..|+.++++..++.+++.+|.+++.+|+|+||+|++++|++++++|+||+||+||+||++|
T Consensus       506 ~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~i  579 (633)
T TIGR00805       506 KKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLI  579 (633)
T ss_pred             cCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhh
Confidence            34678888987667788888999999999999999999999999999999999999999999999999999986

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.79  E-value=4.8e-20  Score=167.00  Aligned_cols=163  Identities=18%  Similarity=0.336  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      +.++++.+.|++ .+++.+   +.++++||||++++ +.|++.+.+|++.+++.++++|+++|.|||||+++|.+++++|
T Consensus        36 ~~~~~~~~~~~~-~~g~~~---~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg  111 (633)
T TIGR00805        36 LLLTCAQLQGLL-YNGLVN---SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG  111 (633)
T ss_pred             HHHHHHHHHHHH-HHHHHH---hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence            334445555554 566666   55568899999997 9999999999999999999999999999999999999999999


Q ss_pred             ccccccccc-----------------------ccCCC--CccccCCCCCCccchh--HHHHHHHHHHHHHhhcCccCcee
Q psy10696         84 CFLRTYTNC-----------------------SCIPN--GMATQGACPADCGSHF--MWFIFILCLLNFFSATGRAGNTI  136 (174)
Q Consensus        84 ~~l~~l~~c-----------------------~c~~~--~~~~~~~C~~~C~~~~--~~f~~lf~~~q~l~g~g~tP~~~  136 (174)
                      +++++++|.                       .|..+  ++..++.|+++|+++.  ..++.++++++++.|+|.+|.++
T Consensus       112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~  191 (633)
T TIGR00805       112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP  191 (633)
T ss_pred             HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence            999998752                       12111  1122234555665422  12344567899999999999999


Q ss_pred             EEee----ecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        137 IQFR----CVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       137 lgl~----~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                      ++.+    ++++++|+.|+|+.+. ...+|...||++.|+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~-~~~iG~~lG~llgg~  230 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILES-IAVFGPAFGYLLGSF  230 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence            9987    4788999999999876 566677777776654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1330|consensus

Probab=98.40  E-value=1e-06  Score=77.16  Aligned_cols=170  Identities=19%  Similarity=0.271  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCCC--Ccceee--eehhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKG--HKTKWV--ALGSII   79 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~~--~~prwi--g~g~l~   79 (174)
                      +-.+.++|-+.|+|++.+.++..+.|+|+.+.-+.+...|+++-+-.+|..++++..++.++..  ||=-..  |+..++
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi  200 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVI  200 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHH
Confidence            3457889999999999999999999999999999899999999999999999999999997652  332222  233333


Q ss_pred             hhhhcccccc-------------------------------------------------------------------ccc
Q psy10696         80 MSIGCFLRTY-------------------------------------------------------------------TNC   92 (174)
Q Consensus        80 ~~~g~~l~~l-------------------------------------------------------------------~~c   92 (174)
                      +++-.+++..                                                                   .++
T Consensus       201 ~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~  280 (493)
T KOG1330|consen  201 VGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGF  280 (493)
T ss_pred             HHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCC
Confidence            3332222210                                                                   000


Q ss_pred             -----------ccCCC------C------------ccccCCCC-------------------CCccchhHHHHHHHHHHH
Q psy10696         93 -----------SCIPN------G------------MATQGACP-------------------ADCGSHFMWFIFILCLLN  124 (174)
Q Consensus        93 -----------~c~~~------~------------~~~~~~C~-------------------~~C~~~~~~f~~lf~~~q  124 (174)
                                 +|...      +            +.....|+                   ..++++.+..+.+++++.
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~  360 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGE  360 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                       01000      0            00011121                   122334444556778899


Q ss_pred             HHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        125 FFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       125 ~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ++.-.+.++...+-+..|+|+.|+.+.+++..+.+++|+.++|-+.|.+
T Consensus       361 ~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  361 TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             HHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence            9999999999999999999999999999999999999999999666643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.82  E-value=0.00018  Score=62.10  Aligned_cols=145  Identities=10%  Similarity=0.081  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhh
Q psy10696          2 FSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIM   80 (174)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~   80 (174)
                      ++++.+++.-++.|...+    +..+.+++.+++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|.+-+|.+++
T Consensus         3 ~~~~~~~~~f~~~G~~~~----~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~   78 (410)
T TIGR00885         3 IPFALITSLFALWGFAND----ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY   78 (410)
T ss_pred             cHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            578888888888898543    33355567788999996 9999999999999999999999888755555667888888


Q ss_pred             hhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHH
Q psy10696         81 SIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEA  156 (174)
Q Consensus        81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~  156 (174)
                      ++|+++.....  .               .++.+.    +.+..++.|+|.+-..+    ...+..++++++..+++...
T Consensus        79 ~~g~~l~~~~~--~---------------~~~~~~----~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (410)
T TIGR00885        79 ALGAFLFWPAA--E---------------IMNYTL----FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQS  137 (410)
T ss_pred             HHHHHHHHHHH--h---------------hccHHH----HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHH
Confidence            88876643210  0               011122    23455666666554443    33345677888888888776


Q ss_pred             HHHhhccCcchhhhhc
Q psy10696        157 LGCGLAFIPGPIIYGA  172 (174)
Q Consensus       157 ~~rllg~IP~Pi~fG~  172 (174)
                      . .-+|...+|.+.+.
T Consensus       138 ~-~~lG~~~g~~i~~~  152 (410)
T TIGR00885       138 F-NPFGSIIGMVVAQQ  152 (410)
T ss_pred             H-HHHHHHHHHHHHHH
Confidence            4 44566677766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.81  E-value=0.00022  Score=61.62  Aligned_cols=143  Identities=10%  Similarity=0.180  Sum_probs=100.2

Q ss_pred             hhHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhh
Q psy10696          2 FSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIM   80 (174)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~   80 (174)
                      ..+..++++.++..+..+. .+   ..+.++.++++.+. +.|++.+.+.++.+++.++.+.+.+|-.|.|++-++.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~---~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   77 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTI-VN---VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF   77 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence            4566777788888775443 33   33456678888885 9999999999999999999999888755556667777787


Q ss_pred             hhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHH
Q psy10696         81 SIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEA  156 (174)
Q Consensus        81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~  156 (174)
                      ++++++..+.                   ++ ..    .+.++.++.|++.+...+..    .+.+++++|+.+.|+...
T Consensus        78 ~~~~~~~~~~-------------------~~-~~----~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  133 (485)
T TIGR00711        78 TLGSLLCGVA-------------------PN-LE----LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGL  133 (485)
T ss_pred             HHHHHHHhCc-------------------CC-HH----HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            7777765432                   01 11    12456777777776555443    346888999999998765


Q ss_pred             HHHhhccCcchhhhhcc
Q psy10696        157 LGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       157 ~~rllg~IP~Pi~fG~~  173 (174)
                       ...+|.+.+|++.|++
T Consensus       134 -~~~~g~~~g~~~~~~l  149 (485)
T TIGR00711       134 -TVLVAPALGPTLGGWI  149 (485)
T ss_pred             -HHHHHhhhhhccHhHh
Confidence             4555677777776654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.71  E-value=0.00084  Score=57.96  Aligned_cols=125  Identities=15%  Similarity=0.182  Sum_probs=84.7

Q ss_pred             eecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCC
Q psy10696         28 YLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACP  106 (174)
Q Consensus        28 ~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~  106 (174)
                      .++++.++++.+. +.|.+.+.+.++..++.++.+++.+|-.+-|.+.++.++.++++++..+.                
T Consensus        45 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------------  108 (434)
T PRK11663         45 AMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS----------------  108 (434)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----------------
Confidence            3456667788886 99999999999999999999999887555456678888888877765432                


Q ss_pred             CCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        107 ADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       107 ~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                          ++.+.+....++..+..|.+..+...+.-+..++++|+.++|+.+... -+|.+-+|.+.|++
T Consensus       109 ----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~-~~g~~~~~~~~~~l  170 (434)
T PRK11663        109 ----SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAH-NVGGALIPLVVGAI  170 (434)
T ss_pred             ----hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence                111222222222334445444444444445678899999999998754 46677777776654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.64  E-value=0.00074  Score=57.07  Aligned_cols=150  Identities=11%  Similarity=-0.001  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      .+..++++.++..++.+...+....+   ++++++.+. +.|.+.+.+.++.++...+.+.+.+|-.|-|.+-.+.++.+
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~l~~~---i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         16 RIVSIVMFTFISYLTIGLPLAVLPGY---VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            35667888888888765544433332   356778775 99999999999999999999999887655556667777777


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~  157 (174)
                      ++++...+......               ..... ...+.+..++.|++.+...+..    .+.+++|+|+.+.|+....
T Consensus        93 ~~~~~~~~~~~~~~---------------~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  156 (399)
T PRK05122         93 LSGLLYLLAGLLAA---------------WPVLS-LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA  156 (399)
T ss_pred             HHHHHHHHhhhhhc---------------cchhH-HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhh
Confidence            66655433211000               00011 1123456777888776655443    3467899999999986653


Q ss_pred             HHhhccCcchhhhhc
Q psy10696        158 GCGLAFIPGPIIYGA  172 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~  172 (174)
                       ..+|.+.||.+-|+
T Consensus       157 -~~~g~~~g~~l~~~  170 (399)
T PRK05122        157 -TYGALAIGAPLGVL  170 (399)
T ss_pred             -hhHHHHHHHHHHHH
Confidence             33466666665554

>PRK10054 putative transporter; Provisional

Probab=96.63  E-value=0.00045  Score=59.02  Aligned_cols=142  Identities=17%  Similarity=0.143  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      +..+++.+++...+.+...+....++   +++++.+. +.|.+.+.+.++..+..++.+++.+|-+|.|.+-++.+..++
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l---~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~   85 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYL---SRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFAS   85 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence            45677788888888777777666666   45678885 999999999999999999999988875444455566666666


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALG  158 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~  158 (174)
                      +.+...+.+                   + .+.+..    ...+.+.+..+..+..    -+.+++++|+.++|+.....
T Consensus        86 ~~~~~~~~~-------------------~-~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  141 (395)
T PRK10054         86 GFIAIPLVN-------------------N-VTLVVL----FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTML  141 (395)
T ss_pred             HHHHHHHHh-------------------H-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Confidence            665543321                   0 111111    1122232222222221    23467888999999888866


Q ss_pred             HhhccCcchhhhhcc
Q psy10696        159 CGLAFIPGPIIYGAL  173 (174)
Q Consensus       159 rllg~IP~Pi~fG~~  173 (174)
                      .+ |.+-+|++.|++
T Consensus       142 ~l-g~~igp~l~~~l  155 (395)
T PRK10054        142 NI-GWTVGPPLGTLL  155 (395)
T ss_pred             HH-HHHHHHHHHHHH
Confidence            54 777788776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.48  E-value=0.00092  Score=54.20  Aligned_cols=140  Identities=19%  Similarity=0.355  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ..++.+++..+++.....+...    ...++++.+. +.+.+.+.+.++..++.++.+.+.+|-.|-|++-++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~   77 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALP----LLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHH
Confidence            3456677777776555444443    3445556675 9999999999999999999999988755444777888887777


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~r  159 (174)
                      .+...+.     +              + .+    .+.+.+++.|++.+...+...    +..++|+|+...++... ..
T Consensus        78 ~~~~~~~-----~--------------~-~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  132 (352)
T cd06174          78 SLLLAFA-----S--------------S-LW----LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSA-GF  132 (352)
T ss_pred             HHHHHHh-----c--------------c-HH----HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHH-HH
Confidence            7665443     0              1 11    234567777877766554433    36778899999999876 44


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                      -+|.+.+|.+.|.+
T Consensus       133 ~~g~~~~~~~~~~~  146 (352)
T cd06174         133 GLGALLGPLLGGLL  146 (352)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55677777776653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG1330|consensus

Probab=96.45  E-value=0.0043  Score=54.83  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      ++++|+.++++=+=...+-    ....|.+.-|+.+ ++.|.+...+.+...+...+-+|++.|-||++.++.|..+-++
T Consensus        35 l~il~~vnlmny~Dr~~ia----gv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIA----GVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhh----hhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            5677888888777554332    3557889999999 5999999999999999999999999999999999988887776


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEee----ecCCCCchhHHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFR----CVSPEDKSLSIGITEALG  158 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~----~V~~~~sslylGi~~~~~  158 (174)
                      ..+...+.                    +    .+..+.+.-.+.|+|.+-..++.-+    .-++++|+..+|+.+...
T Consensus       111 Av~~~~fs--------------------~----~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~i  166 (493)
T KOG1330|consen  111 AVFASGFS--------------------N----HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAI  166 (493)
T ss_pred             HHHHHHHH--------------------H----HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhc
Confidence            55432221                    1    2223456788999999998888876    567789999999999865

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.45  E-value=0.00063  Score=56.60  Aligned_cols=133  Identities=18%  Similarity=0.200  Sum_probs=88.2

Q ss_pred             HHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccc
Q psy10696         11 STVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTY   89 (174)
Q Consensus        11 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l   89 (174)
                      .++++.+.+.+.+    .+++.+++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-.+.++.+++.+...+
T Consensus        14 ~~~~~~~~~~~~~----~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   89 (385)
T TIGR00710        14 SILGPLGIDMYLP----AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL   89 (385)
T ss_pred             HHHHHHHHHHhcc----cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            3444554443333    3456678888886 9999999999999999999999888755555667777777777765443


Q ss_pred             cccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHhhccCc
Q psy10696         90 TNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCGLAFIP  165 (174)
Q Consensus        90 ~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rllg~IP  165 (174)
                      .     +              + .+.    +.+..++.|++.+...+..    .+..++|+|+...|+...... +|.+.
T Consensus        90 ~-----~--------------~-~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  144 (385)
T TIGR00710        90 S-----N--------------N-IET----LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLA-LAPAV  144 (385)
T ss_pred             H-----c--------------c-HHH----HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHH
Confidence            2     0              1 111    2345667777665544333    346788889999998887554 44556


Q ss_pred             chhhhhc
Q psy10696        166 GPIIYGA  172 (174)
Q Consensus       166 ~Pi~fG~  172 (174)
                      +|.+.|+
T Consensus       145 g~~~~~~  151 (385)
T TIGR00710       145 APLLGGY  151 (385)
T ss_pred             HHHHHHH
Confidence            6665554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.34  E-value=0.0007  Score=56.51  Aligned_cols=140  Identities=9%  Similarity=0.083  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      +....++.+..+..... .+   ..+++++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|++-++.++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~   89 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFL-VA---LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA   89 (405)
T ss_pred             HHHHHHHHHHHHHHHHH-HH---HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34555666666664332 22   33456778899986 999999999999999999999998875554555567777777


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALG  158 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~  158 (174)
                      +++...+.     +              + .+.    +.+..++.|++.+..++...    +..++++|+.+.|+..+ .
T Consensus        90 ~~~~~~~~-----~--------------~-~~~----l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~  144 (405)
T TIGR00891        90 GTLACGFA-----P--------------G-YIT----MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLIS-G  144 (405)
T ss_pred             HHHHHHHh-----c--------------c-HHH----HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHH-H
Confidence            76654332     0              1 111    23456777777766655433    46788899999998776 3


Q ss_pred             HhhccCcchhhhhc
Q psy10696        159 CGLAFIPGPIIYGA  172 (174)
Q Consensus       159 rllg~IP~Pi~fG~  172 (174)
                      ..+|.+.+|.+.+.
T Consensus       145 ~~~g~~~~~~l~~~  158 (405)
T TIGR00891       145 YAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44566666665543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.32  E-value=0.0011  Score=57.36  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             CCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchh
Q psy10696         35 KNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        35 ~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      +++.+. +.|.+.+.+.++..++.++.+++.+|-.+.|++..+.++.+++.++..+.   . .              .. 
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~-~--------------~~-  130 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA---A-G--------------GG-  130 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHH---H-H--------------cC-
Confidence            577786 99999999999999999999999887665566677777777776553211   0 0              00 


Q ss_pred             HHHHHHHHHHHHHhhcCccCceeEEee----ecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNTIIQFR----CVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~~lgl~----~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                        + ..+++..++.|++.++.++...+    ..++++|+.+.|+.... ..+|.+.+|++.|++
T Consensus       131 --~-~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~i~~~l~~~l  190 (465)
T TIGR00894       131 --I-ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG-FQLGTFIFLPISGWL  190 (465)
T ss_pred             --c-hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence              1 12345678889998888876654    57789999999998763 445677777776654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.26  E-value=0.00048  Score=60.63  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      +...+++.++..+ .+..++...+   +++++++.+. +.+++.+.|.++.+...++.+.+.+|-.|.|++-++.+++++
T Consensus         8 ~~~~~~~~~~~~l-d~tiv~~a~p---~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          8 LVIIVLVYIPVAI-DATVLHVAAP---TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHH---HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4566677777766 4445554444   6678888885 999999999999999999999988876666677788888888


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----e-ecCCCCchhHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----R-CVSPEDKSLSIGITEAL  157 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~-~V~~~~sslylGi~~~~  157 (174)
                      ++++..+.     +              + .+    .++++.++.|+|.+..++...    + +.++++|+.++|+....
T Consensus        84 ~~~~~~~a-----~--------------~-~~----~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~  139 (495)
T PRK14995         84 ASLAAAFS-----P--------------T-AS----WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAV  139 (495)
T ss_pred             HHHHHHHc-----C--------------C-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88775432     0              1 12    124466777777765544322    2 35678999999998774


Q ss_pred             HHhhccCcchhhhhcc
Q psy10696        158 GCGLAFIPGPIIYGAL  173 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~~  173 (174)
                       ..+|..-||.+.|++
T Consensus       140 -~~~g~~~gp~lgg~l  154 (495)
T PRK14995        140 -GSGGAAFGPLVGGIL  154 (495)
T ss_pred             -HHHHHHHHHHHHHHh
Confidence             445778888887765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.19  E-value=0.00081  Score=56.15  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=81.4

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCC
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGAC  105 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C  105 (174)
                      +.+++..++++.+. +.|.+.+.+.++.+++.++.+.+.+|-.|.|++-.+.++.+++.++..+.+              
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--------------   77 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--------------   77 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------------
Confidence            45567777888885 999999999999999999999988876665677778888777777654320              


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcCccCc----eeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        106 PADCGSHFMWFIFILCLLNFFSATGRAGN----TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       106 ~~~C~~~~~~f~~lf~~~q~l~g~g~tP~----~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                           + .+.+    .+..++.|++.+..    ..+..+..++|+|+...|+.+.... +|.+.+|++.|+
T Consensus        78 -----~-~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~  137 (377)
T PRK11102         78 -----T-IDQL----IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMT-IAPLLAPIIGGW  137 (377)
T ss_pred             -----c-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                 1 1111    22334444444332    2233345778889999998876554 466677776654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.18  E-value=0.0015  Score=55.24  Aligned_cols=139  Identities=12%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      +..++++.+..+++...+.+    .+++++++++.+. +.|.+.+.+.++..++.++.+.+.+|-+|.|.+..+.++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMG----VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHh----ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            45667788888887665444    4556778889885 999999999999999999999988876665566778888887


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALG  158 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~  158 (174)
                      +.++..+.+                   + .+.    +.+..++.|++.+...+..    -+..++++|+..+|+.... 
T Consensus        81 ~~~l~~~~~-------------------~-~~~----l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  135 (382)
T PRK10091         81 GNAMFTLSS-------------------S-YLM----LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSG-  135 (382)
T ss_pred             HHHHHHHhC-------------------c-HHH----HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHH-
Confidence            776654321                   0 111    1234555665544332221    2346667778788776543 


Q ss_pred             HhhccCcchhhhh
Q psy10696        159 CGLAFIPGPIIYG  171 (174)
Q Consensus       159 rllg~IP~Pi~fG  171 (174)
                      ..+|...+|.+-|
T Consensus       136 ~~~g~~~g~~l~~  148 (382)
T PRK10091        136 MTVANLLGIPLGT  148 (382)
T ss_pred             HHHHHHHhccHHH
Confidence            3334444554433

>PRK03699 putative transporter; Provisional

Probab=96.14  E-value=0.0024  Score=54.22  Aligned_cols=120  Identities=13%  Similarity=0.120  Sum_probs=76.3

Q ss_pred             eecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCC
Q psy10696         28 YLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACP  106 (174)
Q Consensus        28 ~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~  106 (174)
                      .+++++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|.|.+-.+.++.++++++..+.     +          
T Consensus        29 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----~----------   93 (394)
T PRK03699         29 VMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----H----------   93 (394)
T ss_pred             hhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----c----------
Confidence            3456778888885 99999999999999999999998877655566667777777777665432     0          


Q ss_pred             CCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        107 ADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       107 ~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                          + .+.+    .+..++.|++....++    ...+..++++|+..++..+.... +|.+-+|.+.|+
T Consensus        94 ----~-~~~~----~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~  153 (394)
T PRK03699         94 ----S-LALF----SIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFS-MAGMIFPIIAAY  153 (394)
T ss_pred             ----h-HHHH----HHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                1 1112    2233444444333332    22345677788888887765433 334445554443

>PRK03545 putative arabinose transporter; Provisional

Probab=96.11  E-value=0.0015  Score=55.31  Aligned_cols=122  Identities=16%  Similarity=0.119  Sum_probs=83.7

Q ss_pred             eeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCC
Q psy10696         26 VAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGA  104 (174)
Q Consensus        26 ~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~  104 (174)
                      .+.+++++++++.+. +.|.+.+.+.++..++..+.++..+|-.|-|++-.+.++.+++++...+.              
T Consensus        29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------------   94 (390)
T PRK03545         29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--------------   94 (390)
T ss_pred             HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            345677889999996 99999999999999999999988887666667777788888877655432              


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        105 CPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       105 C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                            ++.+.    +.+..++.|++.+..++    +..+..++|+|+.++|+... ...+|...+|.+.|.
T Consensus        95 ------~~~~~----l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~-~~~~g~~ig~~l~~~  155 (390)
T PRK03545         95 ------WNFTV----LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLAT-GTALAMVLGLPLGRV  155 (390)
T ss_pred             ------ccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHH-HHHHHHHHHhhHHHH
Confidence                  01111    12345566666544333    22346788999999998765 344456666665543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.11  E-value=0.0021  Score=54.82  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             hhHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhh
Q psy10696          2 FSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIM   80 (174)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~   80 (174)
                      ++...++....+.|+-....+....+.+++++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|.|-+-.+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~   84 (393)
T PRK09705          5 FPLNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLI   84 (393)
T ss_pred             cchHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHH
Confidence            456677777777777666555666678889999999996 9999999999999999999999988755555667888888


Q ss_pred             hhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEee---ecCCCCchhHHHHHHH
Q psy10696         81 SIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFR---CVSPEDKSLSIGITEA  156 (174)
Q Consensus        81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~---~V~~~~sslylGi~~~  156 (174)
                      +++.+...+.+                   + .+    .+.++.++.|+|.+..++....   ...||+|+.+.|+...
T Consensus        85 ~~~~~~~~~a~-------------------~-~~----~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  139 (393)
T PRK09705         85 AVGALMRELYP-------------------Q-SA----LLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSA  139 (393)
T ss_pred             HHHHHHHHHCc-------------------c-hH----HHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHH
Confidence            88887665431                   1 11    1245688888888776654432   1234778999988765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.07  E-value=0.00092  Score=56.45  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      ++..++.++++.++..+...++...+.    ++++.|. +.|++.+.+.++..++.++.+.+.+|-.|.|.+..+.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~----~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWL----AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888887666655544444    4567774 99999999999999999999998887666666777888888


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~  157 (174)
                      ++++...+.+                   + .+.    +.+..++.|++.+..++..    .+..++++|+.++|.....
T Consensus        83 ~~~~~~~~~~-------------------~-~~~----l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (381)
T PRK03633         83 AGCAGLGLMV-------------------G-FWS----WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV  138 (381)
T ss_pred             HHHHHHHHhc-------------------c-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            7776544320                   1 111    2234556666655443322    2346677788888876643


Q ss_pred             HHhhccCcchhhhhc
Q psy10696        158 GCGLAFIPGPIIYGA  172 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~  172 (174)
                       .-+|..-||.+.+.
T Consensus       139 -~~~g~~~g~~~~~~  152 (381)
T PRK03633        139 -YYLGTVLGQLLVSK  152 (381)
T ss_pred             -HHHHHHHHHHHHhc
Confidence             44466666666554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.99  E-value=0.00071  Score=55.30  Aligned_cols=138  Identities=20%  Similarity=0.325  Sum_probs=93.1

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccc
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL   86 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l   86 (174)
                      +++.++.+++.+.+.+....   .+.++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-++.++.++++++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPL---YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHH---HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence            45566666655443332221   4467788775 9999999999999999999999987743333667888888887555


Q ss_pred             ccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHhhc
Q psy10696         87 RTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCGLA  162 (174)
Q Consensus        87 ~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rllg  162 (174)
                      ..+.     +              + .+    .+++..++.|++.+...+..    .+..++|+|+.++|+... ..-+|
T Consensus        79 ~~~~-----~--------------~-~~----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~g  133 (352)
T PF07690_consen   79 LAFA-----S--------------N-FW----LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSA-GFSLG  133 (352)
T ss_dssp             HHHH-----C--------------C-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHH-HHHHH
T ss_pred             hhhh-----h--------------h-HH----HHhhhccccccccccccccccccccccchhhhhhhccccccc-hhhhh
Confidence            4431     1              1 11    23456777777765555444    346888999999999887 55556


Q ss_pred             cCcchhhhhcc
Q psy10696        163 FIPGPIIYGAL  173 (174)
Q Consensus       163 ~IP~Pi~fG~~  173 (174)
                      .+.+|++.|.+
T Consensus       134 ~~~g~~l~~~l  144 (352)
T PF07690_consen  134 SILGPLLGGFL  144 (352)
T ss_dssp             HHHHHHHHHHC
T ss_pred             hhcccchhhhh
Confidence            77788777654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=95.98  E-value=0.0044  Score=53.78  Aligned_cols=120  Identities=12%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccc
Q psy10696         33 VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGS  111 (174)
Q Consensus        33 ~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~  111 (174)
                      +++ +.+. +.|.+.+.+-++.+++.++.+++.+|-.+.|++-++.++.++++++..+.+..  .              +
T Consensus        56 ~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--~--------------~  118 (452)
T PRK11273         56 VEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--T--------------S  118 (452)
T ss_pred             HHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--c--------------c
Confidence            344 7775 99999999999999999999999988666667778888888888766553110  0              0


Q ss_pred             hhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhh
Q psy10696        112 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII  169 (174)
Q Consensus       112 ~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~  169 (174)
                      +.+..+...++.-+..+....+......+..++|+|+.++|+......+-+.+.+|++
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            1111222222222334433333333334567888999999997765555555555653

>PRK12382 putative transporter; Provisional

Probab=95.97  E-value=0.0026  Score=53.71  Aligned_cols=146  Identities=8%  Similarity=-0.040  Sum_probs=86.9

Q ss_pred             HHHHHHHHhhcccccccceeeeeecc-cccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDD-NVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      .+.++.++..++.+...+    .+.. ++++++.+. +.|.+.+.+.++..+..++.+++.+|-.|-|.+-.+.+..+++
T Consensus        19 ~~~~~~~~~~~~~~~~~p----~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         19 RIAFAVFLTYMTVGLPLP----VIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHHhh----hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            344455555554333333    3322 356788885 9999999999999999999999988754444445555555544


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~r  159 (174)
                      ++...+.......            ...   .+ ..+.++.++.|++.+...+..    .+.+++|+|+.++|+..+ ..
T Consensus        95 ~~~~~~~~~~~~~------------~~~---~~-~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~-~~  157 (392)
T PRK12382         95 GLAYLLAAILPVS------------APF---KF-ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGM-AM  157 (392)
T ss_pred             HHHHHhhhccccc------------hhH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHH-HH
Confidence            4322211000000            001   11 123467788888877655433    346889999999998764 34


Q ss_pred             hhccCcchhhhhc
Q psy10696        160 GLAFIPGPIIYGA  172 (174)
Q Consensus       160 llg~IP~Pi~fG~  172 (174)
                      -+|...+|.+.|+
T Consensus       158 ~~g~~~g~~~~~~  170 (392)
T PRK12382        158 YGALAAGAPLGLL  170 (392)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455666665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.95  E-value=0.00067  Score=55.61  Aligned_cols=144  Identities=16%  Similarity=0.108  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      .+++++++.+++.+........+.+    +++.+ .+.|.+.+.+.++.+++.++.+.+.+|-.|-|.+-++.++.+++.
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~   78 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL----AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLV   78 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH----HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHH
Confidence            3567777777766655444433443    34556 499999999999999999999998887555445555666666555


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCcc----CceeEEeeecCCCCchhHHHHHHHHHHh
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRA----GNTIIQFRCVSPEDKSLSIGITEALGCG  160 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~t----P~~~lgl~~V~~~~sslylGi~~~~~rl  160 (174)
                      +...+.+..  +             +.+.+.+.    +..++.|++.+    +...+..+.+++|+|+.+.|+... ..-
T Consensus        79 ~~~~~~~~~--~-------------~~~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  138 (365)
T TIGR00900        79 AVLPFVALL--G-------------GLNIWQVY----VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQA-VRS  138 (365)
T ss_pred             HHHHHHHHc--C-------------CCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHH-HHH
Confidence            544332100  0             01122222    23334444433    333444457888999999998877 445


Q ss_pred             hccCcchhhhhcc
Q psy10696        161 LAFIPGPIIYGAL  173 (174)
Q Consensus       161 lg~IP~Pi~fG~~  173 (174)
                      +|.+.+|.+.|++
T Consensus       139 ~g~~~g~~l~~~l  151 (365)
T TIGR00900       139 LFYIVGPGIGGLM  151 (365)
T ss_pred             HHHHHHHHHHHHH
Confidence            5667777766543

>TIGR00897 2A0118 polyol permease family

Probab=95.88  E-value=0.002  Score=54.94  Aligned_cols=145  Identities=10%  Similarity=-0.025  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ....+++++..++.+..++...++    .++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|.|++-.+.++.+++
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~----~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~   91 (402)
T TIGR00897        16 LWGYIGVVVFMTGDGLEQGWLSPF----LKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG   91 (402)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHH----HHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            345566667666665444433333    34567775 9999999999999999999999988766666767777777776


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeE----EeeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTII----QFRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~l----gl~~V~~~~sslylGi~~~~~r  159 (174)
                      .+...+... +               ..+.+.+    .+..++.|+|.......    ..+.+++|+|+.+.|+..+...
T Consensus        92 ~~~~~~~~~-~---------------~~~~~~l----~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  151 (402)
T TIGR00897        92 HAAFIVFGL-G---------------HANYPLI----LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYS  151 (402)
T ss_pred             HHHHHHHhc-c---------------CccHHHH----HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            554322100 0               0111111    22344556665443322    2346789999999999887654


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                      +-..+-+|++.|++
T Consensus       152 ~g~~~~g~~~~~~l  165 (402)
T TIGR00897       152 IGIGVFGSYYSSYA  165 (402)
T ss_pred             HHHHHHHHHHHHhc
Confidence            32234566655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.83  E-value=0.0011  Score=57.89  Aligned_cols=121  Identities=9%  Similarity=0.015  Sum_probs=78.5

Q ss_pred             ecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCC
Q psy10696         29 LDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPA  107 (174)
Q Consensus        29 i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~  107 (174)
                      +++++++++.+. +.|.+.+.+.++.+++.++.+++.+|-.+.|.+..+.++.+++.+...+-  .|..           
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~-----------  118 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGAS--LGSG-----------  118 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHH--Hhcc-----------
Confidence            346678899986 99999999999999999999999987666666678888777776655432  1110           


Q ss_pred             CccchhHHHHHHHHHHHHHhhcCccCce----eEEeeecCCCCchhHHHHHHHHHHhhccCcchhh
Q psy10696        108 DCGSHFMWFIFILCLLNFFSATGRAGNT----IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII  169 (174)
Q Consensus       108 ~C~~~~~~f~~lf~~~q~l~g~g~tP~~----~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~  169 (174)
                       . ++.+.+    .+..++.|++.+...    .+.-+..++++|+.++|+.... .-+|.+.+|++
T Consensus       119 -~-~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~-~~lG~~l~~~i  177 (467)
T PRK09556        119 -S-VSLGLM----IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNIS-HNLGGAGAGGV  177 (467)
T ss_pred             -c-chHHHH----HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecc-cchhhhHHHHH
Confidence             0 111212    223444555444433    3333468899999999987653 33344444443

>TIGR00895 2A0115 benzoate transport

Probab=95.73  E-value=0.0019  Score=53.60  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             HHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcc
Q psy10696          7 LLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         7 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~   85 (174)
                      .++..+..+..... ++.   +...+.++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-.+.++.+++.+
T Consensus        22 ~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~   97 (398)
T TIGR00895        22 SFLIMLMDGYDLAA-MGF---AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTL   97 (398)
T ss_pred             HHHHHHHHHHHHHH-HHh---hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34455555553332 222   2334456778885 999999999999999999999988875555566677777777665


Q ss_pred             cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHHhh
Q psy10696         86 LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGCGL  161 (174)
Q Consensus        86 l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~rll  161 (174)
                      +..+.     +              + .+    .+.+..++.|++.+..++...    +..++++|+.+.|+... ..-+
T Consensus        98 ~~~~~-----~--------------~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~  152 (398)
T TIGR00895        98 LCALA-----T--------------N-VT----QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFC-GYPI  152 (398)
T ss_pred             HHHHc-----c--------------c-hH----HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhh-HHHH
Confidence            54432     0              1 11    123456777777766555443    35777889999998765 4445


Q ss_pred             ccCcchhhhhcc
Q psy10696        162 AFIPGPIIYGAL  173 (174)
Q Consensus       162 g~IP~Pi~fG~~  173 (174)
                      |.+.+|.+.|++
T Consensus       153 g~~~~~~~~~~l  164 (398)
T TIGR00895       153 GAAVGGFLAGWL  164 (398)
T ss_pred             HHHHHHHHHHHH
Confidence            666677766553

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.71  E-value=0.0052  Score=53.74  Aligned_cols=117  Identities=15%  Similarity=0.192  Sum_probs=95.5

Q ss_pred             ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccc
Q psy10696         33 VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGS  111 (174)
Q Consensus        33 ~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~  111 (174)
                      .+...++. |+|++.+++.++..++=.+.+++.+|.|-.++++.|.++.|+-.+++.+.+                    
T Consensus        56 ~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--------------------  115 (448)
T COG2271          56 IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--------------------  115 (448)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--------------------
Confidence            44555775 999999999999999999999999976655588999999999888776652                    


Q ss_pred             hhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhh
Q psy10696        112 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII  169 (174)
Q Consensus       112 ~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~  169 (174)
                      +...+..+..+--+++|+|..|..-.....-++++|+.+.++=++.-++=|.++.|+.
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            3456777777889999999999887777778899999999998886677677766654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.66  E-value=0.0017  Score=53.70  Aligned_cols=146  Identities=11%  Similarity=-0.014  Sum_probs=83.7

Q ss_pred             HHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcc
Q psy10696          7 LLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         7 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~   85 (174)
                      .....+++........+....++.   ++++.+. +.+.+.+...++..++..+.++..+|-.|.|++-.+..+..+.++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (394)
T TIGR00883       224 GLGLVIATTTTFYLITTYLPTYLT---QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            344444444444333344444442   3455664 888888888999999988888887764444443322222222221


Q ss_pred             --cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         86 --LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        86 --l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                        ...+.    .+              +..+.+....++..+..+....+......+.+|+++|+.+.|+.+.+.+..|.
T Consensus       301 ~~~~~~~----~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~  362 (394)
T TIGR00883       301 PLLMALL----DS--------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG  362 (394)
T ss_pred             HHHHHHh----cC--------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence              11111    00              01122222223333444444555555555678999999999998778888899


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      ..+|.+.|++
T Consensus       363 ~~~p~~~g~l  372 (394)
T TIGR00883       363 GFAPYIAAAL  372 (394)
T ss_pred             hHHHHHHHHH
Confidence            9999998875

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=95.62  E-value=0.0029  Score=51.29  Aligned_cols=144  Identities=18%  Similarity=0.298  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcce-eeeehhhhhhhh
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTK-WVALGSIIMSIG   83 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~pr-wig~g~l~~~~g   83 (174)
                      .+++..+++..+.+.+......+.+|   +++.+. +.+.+.+...++..++..+.+.+.+|.+|.+ .+-++.++..++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         179 LLALAFFLLSFGYYGLLTYLPLYLQE---VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44555666666666666655555532   335564 9999999999999999999988776644434 555666666666


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                      .+.....+                   + .+......++..+..+...........+.+|+|+|+...|+.... +-+|.
T Consensus       256 ~~~~~~~~-------------------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  314 (352)
T cd06174         256 LLLLALAP-------------------S-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTF-GSLGG  314 (352)
T ss_pred             HHHHHHhc-------------------c-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHH-HHHHH
Confidence            55443321                   0 111222222233333333344444445678889999999998874 45566


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      ..+|.+.|.+
T Consensus       315 ~i~~~i~g~l  324 (352)
T cd06174         315 ALGPLLAGLL  324 (352)
T ss_pred             HHHHHHHHHH
Confidence            7788887764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00893 2A0114 d-galactonate transporter

Probab=95.58  E-value=0.0027  Score=52.18  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=80.8

Q ss_pred             ccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCc
Q psy10696         31 DNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADC  109 (174)
Q Consensus        31 ~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C  109 (174)
                      +.+++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-++.++.+++.++..+.+                  
T Consensus        19 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~------------------   80 (399)
T TIGR00893        19 MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG------------------   80 (399)
T ss_pred             HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc------------------
Confidence            3567788886 999999999999999999999998876665667777777777776654431                  


Q ss_pred             cchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        110 GSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       110 ~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                       + .+.    +.+..++.|++.+...+..    .+..|+|+|+.+.|+.... .-+|.+.+|.+.|+
T Consensus        81 -~-~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~  140 (399)
T TIGR00893        81 -A-YVS----LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA-QGLGGIIGGPLVGW  140 (399)
T ss_pred             -C-HHH----HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence             1 111    2345566666655544433    3457788899999987764 44456666666554

>TIGR00898 2A0119 cation transport protein

Probab=95.56  E-value=0.009  Score=52.20  Aligned_cols=118  Identities=13%  Similarity=0.250  Sum_probs=81.9

Q ss_pred             eecccccCCCch---h-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccC
Q psy10696         28 YLDDNVRKNKMP---V-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQG  103 (174)
Q Consensus        28 ~i~~~~~~~~~s---~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~  103 (174)
                      +.++++++++++   . +.|.+.+.+.+|.+++.++.+++.+|-.|-|++-++.++.+++++...+.             
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-------------  177 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-------------  177 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-------------
Confidence            445678899997   5 99999999999999999999999887555455666777777776654432             


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHhhccCcchhhh
Q psy10696        104 ACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCGLAFIPGPIIY  170 (174)
Q Consensus       104 ~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rllg~IP~Pi~f  170 (174)
                             ++.+.    +.+..++.|++.+..++..    .+.+++++|+.+.++... .-.+|.+.+|++-
T Consensus       178 -------~~~~~----~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~  236 (505)
T TIGR00898       178 -------PNYTV----FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV-FFSLGLVLLPLVA  236 (505)
T ss_pred             -------ccHHH----HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence                   01121    2345666777776655433    457888999998888743 4455666666553

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.49  E-value=0.002  Score=52.80  Aligned_cols=118  Identities=17%  Similarity=0.168  Sum_probs=73.8

Q ss_pred             CCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhH
Q psy10696         36 NKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFM  114 (174)
Q Consensus        36 ~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~  114 (174)
                      ++.+. +.|.+.+.+.++..++..+.++..+|.+|.+++..+.+..+++.+...+.+                +  + .+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--~-~~  302 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP----------------P--N-FP  302 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc----------------h--h-HH
Confidence            56665 899999999999999999988877765555555555555555554433220                0  0 12


Q ss_pred             HHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        115 WFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       115 ~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      .+....++.-+..+....+..+...+.+|+|+|+.+.|+...+.++ |...+|.+.|++
T Consensus       303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l  360 (365)
T TIGR00900       303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            2221111222222333333344445678999999999999987664 677788888875

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.41  E-value=0.0043  Score=53.57  Aligned_cols=142  Identities=18%  Similarity=0.247  Sum_probs=86.6

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccc
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL   86 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l   86 (174)
                      ++..++.+++..+...+...++.   +.++.+. +.|.+.....++..++.++.+++.+|.+|-+++.+|.++.+++.++
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~---~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~  337 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQ---QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYW  337 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence            34444444443333333334443   3455665 9999999999999999999988876644434556777777777766


Q ss_pred             ccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcC----ccCceeEEeeecCCCCchhHHHHHHHHHHhhc
Q psy10696         87 RTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATG----RAGNTIIQFRCVSPEDKSLSIGITEALGCGLA  162 (174)
Q Consensus        87 ~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g----~tP~~~lgl~~V~~~~sslylGi~~~~~rllg  162 (174)
                      ..+..    +.            +...+...    ..+++.|+|    ..|......+.+++++++.+.|+..+ .|-+|
T Consensus       338 ~~~~~----~~------------~~~~~~~~----~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~g  396 (485)
T TIGR00711       338 RAFTF----TP------------DTPFLAIA----LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNF-TRQLG  396 (485)
T ss_pred             HhccC----CC------------CCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHH-HHHHH
Confidence            54320    00            01011111    123333333    34555555667899999999999887 46788


Q ss_pred             cCcchhhhhcc
Q psy10696        163 FIPGPIIYGAL  173 (174)
Q Consensus       163 ~IP~Pi~fG~~  173 (174)
                      ...||.+.|.+
T Consensus       397 ~~ig~~i~g~~  407 (485)
T TIGR00711       397 GSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHH
Confidence            88888887764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.40  E-value=0.0035  Score=53.53  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             eecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCC
Q psy10696         28 YLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACP  106 (174)
Q Consensus        28 ~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~  106 (174)
                      .+.+++++++.+. +.|...+.+.++..++.++.+.+.+|-+|.|.+-.+.++.+++.+...+.                
T Consensus        42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------------  105 (394)
T PRK10213         42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------------  105 (394)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            4556778888885 99999999999999999999999888666666677777777766554332                


Q ss_pred             CCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        107 ADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       107 ~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                          ++.+.    +.+..++.|++....++...    +.+++|+|+.++|+.+.... +|.+-+|++.++
T Consensus       106 ----~~~~~----l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~~~  166 (394)
T PRK10213        106 ----NSFSL----LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVS-IALVIAAPLGSF  166 (394)
T ss_pred             ----ChHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                01121    23455666666654444332    46888999999999887443 566666666554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.25  E-value=0.0028  Score=54.23  Aligned_cols=141  Identities=11%  Similarity=0.110  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      .+++..++++..+....+++...++   +++.+.+. +.|.+.+.+.+...+..++.+.+.+|-.|-|.+-.+.++.+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~   89 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRF---VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAG   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHH
Confidence            4567888888888777777665544   45667775 9999999999999888888888777643333445667777766


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccC----ceeEEeeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAG----NTIIQFRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP----~~~lgl~~V~~~~sslylGi~~~~~r  159 (174)
                      .+...+.                    ++.+..    .+..++.|++.+.    ..++..+.+++|+++.+.|+... ..
T Consensus        90 ~~~~~~~--------------------~~~~~l----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~  144 (400)
T PRK11646         90 FATMAIA--------------------HEPWLL----WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMM-QD  144 (400)
T ss_pred             HHHHHHh--------------------ccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HH
Confidence            6654332                    011211    2234444544432    23333456788999999999876 45


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                      -+|.+.||.+.|++
T Consensus       145 ~~g~~ig~~l~g~l  158 (400)
T PRK11646        145 SAGAVIGALLGSWL  158 (400)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55677788777654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=95.24  E-value=0.0073  Score=51.07  Aligned_cols=109  Identities=12%  Similarity=0.105  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHH
Q psy10696         40 VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFI  119 (174)
Q Consensus        40 ~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~l  119 (174)
                      .+.|.+.+.+.++..++.++.+++.+|-.|.|++.++.++.++++++..+...                ..+    + ..
T Consensus        71 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~----------------~~~----~-~~  129 (481)
T TIGR00879        71 SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF----------------ALS----V-EM  129 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc----------------ccc----h-HH
Confidence            49999999999999999999999988866666777888888887776644200                001    1 12


Q ss_pred             HHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHHhhccCcchhhh
Q psy10696        120 LCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGCGLAFIPGPIIY  170 (174)
Q Consensus       120 f~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~rllg~IP~Pi~f  170 (174)
                      +.++.++.|+|.+..++...    +..++++|+.++|+.... ..+|.+.+|.+-
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~  183 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLA-ITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHH-HHHHHHHHHHHH
Confidence            34577888888777666553    357888999999987654 345555555543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=95.12  E-value=0.003  Score=51.93  Aligned_cols=112  Identities=11%  Similarity=0.056  Sum_probs=76.4

Q ss_pred             ccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCc
Q psy10696         31 DNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADC  109 (174)
Q Consensus        31 ~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C  109 (174)
                      .++++++.+. +.|.+.+.+.++..++.++.+.+.+|-+|.|++-++.++.+++.++..+.+                  
T Consensus        20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------------------   81 (379)
T TIGR00881        20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------------------   81 (379)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh------------------
Confidence            3456778885 999999999999999999999998875555566788888888777654421                  


Q ss_pred             cchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHHhhccCcch
Q psy10696        110 GSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGCGLAFIPGP  167 (174)
Q Consensus       110 ~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~rllg~IP~P  167 (174)
                        +.+.    +.+..++.|++.+..++...    +.+++|+|+.+.|+.... ..+|.+.+|
T Consensus        82 --~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~  136 (379)
T TIGR00881        82 --SLWV----MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCS-HNVGGGLLP  136 (379)
T ss_pred             --hHHH----HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhcc-chhHHHHHH
Confidence              1121    23455666666555544443    357788888888877653 344555555

>PRK03893 putative sialic acid transporter; Provisional

Probab=95.08  E-value=0.0022  Score=55.77  Aligned_cols=140  Identities=10%  Similarity=0.090  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ...+++.++.++..+.. +   ..++.+.++++.+. +.+.+.+.+.++..++.++.+.+.+|-.|-|++-++.++.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         23 SAAWLGYLLDGFDFVLI-T---LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHH-H---HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34556666666643322 2   33456667888886 9999999999999999999998887654444566777777777


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~~r  159 (174)
                      ++...+.                    ++.+.    +.+..++.|++.+..+.    +..++.++|+|+.+.|+.... .
T Consensus        99 ~~~~~~~--------------------~~~~~----l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~  153 (496)
T PRK03893         99 TLACGFA--------------------PGYWT----LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG-F  153 (496)
T ss_pred             HHHHHHH--------------------hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-H
Confidence            7665542                    01111    23345566665544332    334568888899988888764 3


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                      -+|.+.+|.+.+++
T Consensus       154 ~~g~~~~~~~~~~l  167 (496)
T PRK03893        154 SIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45677777776643

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.05  E-value=0.0062  Score=50.49  Aligned_cols=77  Identities=10%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceeeeehhhhhhhhcc
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwig~g~l~~~~g~~   85 (174)
                      .+..++++++.+...+....++   +++++.+. +.|.+.+.+.+...+...+.+.+.+|. +|.+++-.+.+..+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l---~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~   79 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFL---SEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACL   79 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHH---HcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            4567788887776666555544   56778885 999999999999998888888887764 344455445555455544


Q ss_pred             cc
Q psy10696         86 LR   87 (174)
Q Consensus        86 l~   87 (174)
                      +.
T Consensus        80 ~~   81 (375)
T TIGR00899        80 LF   81 (375)
T ss_pred             HH
Confidence            43

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=94.89  E-value=0.012  Score=50.26  Aligned_cols=118  Identities=15%  Similarity=0.096  Sum_probs=72.9

Q ss_pred             CCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchh
Q psy10696         35 KNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        35 ~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      .++.+. +.|.+.+.+.++..++.++..+..+|.++.|++..+.+..+++.++..+.     +              +..
T Consensus       253 ~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~--------------~~~  313 (417)
T PRK10489        253 VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----P--------------MWI  313 (417)
T ss_pred             ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----c--------------hHH
Confidence            356664 89999999999999999988887765444455666666666655443322     0              100


Q ss_pred             HHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ......++.+ +..+......+++..+.+|++.|+.+.|+... ..-+|...||.+.|++
T Consensus       314 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~~g~~l~G~l  371 (417)
T PRK10489        314 LAVLCLALFG-YLSAISSLLQYTLLQTQTPDEMLGRINGLWTA-QNVTGDAIGAALLGGL  371 (417)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-HHhhhHhHHHHHHHHH
Confidence            1111111111 22222222333444557888889999999876 4556888899998875

>PRK10489 enterobactin exporter EntS; Provisional

Probab=94.87  E-value=0.014  Score=49.72  Aligned_cols=148  Identities=14%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      .+++++++..++.+.... ..+.+   .++.+.+ .+.|.+.+.+.++..++.++.+.+.+|-+|.|.+-.+.++.+++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~   96 (417)
T PRK10489         21 AVFIARFISIFGLGLLGV-AVPVQ---IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGF   96 (417)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHH
Confidence            345566666665443333 22322   2333345 499999999999999999999998888666677777777776665


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccC
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFI  164 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~I  164 (174)
                      +...+..-.  .            . +..+.+....++..+..+....+......+.+++++++.+.++... ..-+|.+
T Consensus        97 ~~~~~~~~~--~------------~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~  160 (417)
T PRK10489         97 IGLALNAFL--P------------E-PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITML-TVRLGSV  160 (417)
T ss_pred             HHHHHHHHc--C------------C-CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-HHhHHHH
Confidence            543321000  0            0 1112222222222233444445555566678889999999988765 4556677


Q ss_pred             cchhhhhcc
Q psy10696        165 PGPIIYGAL  173 (174)
Q Consensus       165 P~Pi~fG~~  173 (174)
                      -||.+.|++
T Consensus       161 ~g~~l~g~l  169 (417)
T PRK10489        161 ISPALGGLL  169 (417)
T ss_pred             hHHHHHHHH
Confidence            788776654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=94.80  E-value=0.046  Score=47.17  Aligned_cols=141  Identities=13%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             HHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcc
Q psy10696          7 LLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         7 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~   85 (174)
                      +.+.+....+....+. ...+++.|    .+.+. +.|.+.+.+.++..++.++.+.+.+|-+|-|++-.+.++.+++++
T Consensus        32 ~~~~~~~~~~~~~~~~-~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~  106 (438)
T TIGR00712        32 IFFGYAAYYLVRKNFA-LAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVML  106 (438)
T ss_pred             HHHHHHHHHHHhccHH-hhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHH
Confidence            3344444444333222 23344433    36775 999999999999999999999998886665677788888888877


Q ss_pred             cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCc
Q psy10696         86 LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIP  165 (174)
Q Consensus        86 l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP  165 (174)
                      ...+.+..               . ++........++..+..|....+......+..++++|+.+.|+.+....+ |..-
T Consensus       107 ~~~~~~~~---------------~-~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-g~~~  169 (438)
T TIGR00712       107 LMGFVPWA---------------T-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI-GGGI  169 (438)
T ss_pred             HHhccccc---------------c-chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh-HhHH
Confidence            65432100               0 11111111111222223333233333334568899999999998775554 4444


Q ss_pred             chhh
Q psy10696        166 GPII  169 (174)
Q Consensus       166 ~Pi~  169 (174)
                      +|.+
T Consensus       170 ~~~l  173 (438)
T TIGR00712       170 PPLL  173 (438)
T ss_pred             HHHH
Confidence            4433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=94.77  E-value=0.0091  Score=52.05  Aligned_cols=140  Identities=12%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccce---eeeehhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTK---WVALGSII   79 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~pr---wig~g~l~   79 (174)
                      .+.++..++.+++.....+...+|++|    ++.+. +.|.+.+...++..++..+.+.+.+|. .|+|   .++.+.+.
T Consensus       244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       244 LVYLSGNVIMFLGFFAPIIFLVPYAKD----KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            344555666666555555544555543    35664 999999999999998888888877652 2333   23344444


Q ss_pred             hhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCcc----CceeEEeeecCCCCchhHHHHHH
Q psy10696         80 MSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRA----GNTIIQFRCVSPEDKSLSIGITE  155 (174)
Q Consensus        80 ~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~t----P~~~lgl~~V~~~~sslylGi~~  155 (174)
                      .+++.++..+.                    ++.+.+    .+..++.|++..    +.+.+..+.+++++++.+.|+..
T Consensus       320 ~~l~~ll~~~~--------------------~~~~~~----~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~  375 (455)
T TIGR00892       320 NGLTHLLCALA--------------------GDYTGL----VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVT  375 (455)
T ss_pred             HHHHHHHHHHh--------------------chHHHH----HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHH
Confidence            44433322111                    011111    122333333332    33334445688899999999987


Q ss_pred             HHHHhhccCcchhhhhcc
Q psy10696        156 ALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       156 ~~~rllg~IP~Pi~fG~~  173 (174)
                      .. .-+|.+.||.+.|++
T Consensus       376 ~~-~~lg~~igp~i~G~l  392 (455)
T TIGR00892       376 IV-ECCAVLIGPPLAGRL  392 (455)
T ss_pred             HH-HHHHHHccccceeee
Confidence            75 456888899988875

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=94.71  E-value=0.0068  Score=52.80  Aligned_cols=146  Identities=12%  Similarity=0.059  Sum_probs=81.6

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccc
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL   86 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l   86 (174)
                      ++..+++.....++......|+.   +.++.+. +.+.+.+...++..++.++.+++.+|-.|.|++-.+.....++...
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~---~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~  340 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAF---QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTL  340 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            34444444444444444445663   3566775 8889999999999999999999887633323332222121122111


Q ss_pred             ccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcc
Q psy10696         87 RTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPG  166 (174)
Q Consensus        87 ~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~  166 (174)
                      ..+.   . .             ++....+..++.++....+. ..+......+.+|+++++.+.|+...+..+.|...+
T Consensus       341 ~~~~---~-~-------------~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~  402 (467)
T PRK09556        341 GVYQ---H-A-------------TSEYMYLASLFALGFLVFGP-QLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFA  402 (467)
T ss_pred             HHHH---h-c-------------CcHHHHHHHHHHHHHHHhhH-HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHH
Confidence            1111   0 0             01111223333333221111 111112233678999999999999998898898999


Q ss_pred             hhhhhccC
Q psy10696        167 PIIYGALL  174 (174)
Q Consensus       167 Pi~fG~~i  174 (174)
                      |.+.|+++
T Consensus       403 ~~~~G~i~  410 (467)
T PRK09556        403 KVGLGMIA  410 (467)
T ss_pred             hhhHHHHh
Confidence            99999863

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=94.65  E-value=0.009  Score=50.70  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      ..+.+.+.+++..++.+.+.+.    +.++.++++.+. +.+...+.+.++..++..+.+++.+|-+|-|++-++.++.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   89 (406)
T PRK15402         14 FPLCLVLFEFATYIANDMIQPG----MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI   89 (406)
T ss_pred             HHHHHHHHHHHHHhhhhhHhcc----hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            4566777788777766655543    334567788885 99999999999999999999999887655566667777777


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~  157 (174)
                      ++++...+.     +              + .+    .+.+..++.|++.+...+...    +..+++++....++....
T Consensus        90 ~~~~~~~~~-----~--------------~-~~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  145 (406)
T PRK15402         90 LTCLAILLA-----Q--------------S-IE----QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV  145 (406)
T ss_pred             HHHHHHHHH-----c--------------c-HH----HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence            776654332     0              0 11    122345555655544333222    346777777777766553


Q ss_pred             HHhhccCcchhhhhc
Q psy10696        158 GCGLAFIPGPIIYGA  172 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~  172 (174)
                      . .+|.+.+|.+.++
T Consensus       146 ~-~~~~~~g~~i~~~  159 (406)
T PRK15402        146 A-LLAPLLGPLVGAA  159 (406)
T ss_pred             H-HHHHHHHHHHHHH
Confidence            3 2455556665443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=94.64  E-value=0.0067  Score=51.17  Aligned_cols=121  Identities=11%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCC
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGAC  105 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C  105 (174)
                      +.+.++.++++.+. +.+.+.+.+.++..++.++.+.+.+|-.|-|++-.+.++.+++.+...+.+              
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~--------------   89 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE--------------   89 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--------------
Confidence            34567778888885 999999999999999999999988875554566677777777766544320              


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        106 PADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       106 ~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                           + .+.    +.+..++.|++....++..    .+..++++|+..+|+.+.... +|.+.+|++.+.
T Consensus        90 -----~-~~~----~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-i~~~~~~~i~~~  149 (392)
T PRK10473         90 -----T-SSL----FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITC-IIPVLAPVLGHL  149 (392)
T ss_pred             -----c-HHH----HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                 1 111    1234556666554444333    235778899999998877554 345566766543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=94.52  E-value=0.016  Score=50.07  Aligned_cols=108  Identities=6%  Similarity=0.116  Sum_probs=75.6

Q ss_pred             Cchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHH
Q psy10696         37 KMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMW  115 (174)
Q Consensus        37 ~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~  115 (174)
                      +.+. +.|.+.+.+.++.+++.++.+.+.+|-.|-|.+-++.++++++.+..++.+..-..  .        ...+  +.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~--~--------~~~~--~~  118 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS--I--------GPDN--TG  118 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccc--c--------cccc--hh
Confidence            6675 99999999999999999999999887656556667777777777766654221100  0        0001  11


Q ss_pred             HHHHHHHHHHHhhcCccCceeEEee----ecCCCCchhHHHHHHH
Q psy10696        116 FIFILCLLNFFSATGRAGNTIIQFR----CVSPEDKSLSIGITEA  156 (174)
Q Consensus       116 f~~lf~~~q~l~g~g~tP~~~lgl~----~V~~~~sslylGi~~~  156 (174)
                      ....++++.++.|++.+..++....    ..++|+|+.++|+...
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~  163 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF  163 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHH
Confidence            1223456889999998887776654    5788999999998765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=94.38  E-value=0.0073  Score=51.54  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      +..+++++++..++.+.+.......    .++++.+. +.+++.+.+-++..+..++.+.+.+|-+|-|-+-++.++.++
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~   80 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIAL----LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL   80 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence            3467888888888766554433332    34555554 899999999999999999999999886665555666666666


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALG  158 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~  158 (174)
                      +++...+.                    .+.       .+..++.|++.+..++...    +.+|+|+++.+.|+... .
T Consensus        81 ~~~~~~~~--------------------~~~-------~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~-~  132 (393)
T PRK11195         81 GCLLMLFG--------------------IHP-------LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEG-S  132 (393)
T ss_pred             HHHHHHHH--------------------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH-H
Confidence            65543211                    001       1223455666665555443    46999999999999775 5


Q ss_pred             HhhccCcchhhhhcc
Q psy10696        159 CGLAFIPGPIIYGAL  173 (174)
Q Consensus       159 rllg~IP~Pi~fG~~  173 (174)
                      ..+|.+.||.+-|++
T Consensus       133 ~~~~~~~Gp~lgG~l  147 (393)
T PRK11195        133 TIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677888888887765

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=94.25  E-value=0.015  Score=48.88  Aligned_cols=141  Identities=13%  Similarity=0.050  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh------HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV------VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGS   77 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~------~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~   77 (174)
                      +..+++++++.+++.+.+.++...+.    ++++.+.      +.|.+.+.+.++..++..+.+.+.+|..|-|++-.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   91 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYV----EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH----HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence            34567888888887776655544444    3444442      4599999999999999999999888754444555666


Q ss_pred             hhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCc--cCce-eEEeeecCCCCchhHHHHH
Q psy10696         78 IIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGR--AGNT-IIQFRCVSPEDKSLSIGIT  154 (174)
Q Consensus        78 l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~--tP~~-~lgl~~V~~~~sslylGi~  154 (174)
                      ++.+++.++..+.                    ++.+.+    .+..++.|++.  .|.. ....+.+++++|+.+.|+.
T Consensus        92 ~~~~~~~~~~~~~--------------------~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (408)
T PRK09874         92 LGMGIVMVLMGLA--------------------QNIWQF----LILRALLGLLGGFVPNANALIATQVPRNKSGWALGTL  147 (408)
T ss_pred             HHHHHHHHHHHHH--------------------hhHHHH----HHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHH
Confidence            6666665543321                    011111    12233333332  1211 1122357888899999888


Q ss_pred             HHHHHhhccCcchhhhhcc
Q psy10696        155 EALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       155 ~~~~rllg~IP~Pi~fG~~  173 (174)
                      ... ..+|.+.+|.+.|.+
T Consensus       148 ~~~-~~~g~~~~~~~~~~l  165 (408)
T PRK09874        148 STG-GVSGALLGPLAGGLL  165 (408)
T ss_pred             HHH-HHHHHHHHHHHHHHH
Confidence            664 455677777776653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=94.17  E-value=0.0099  Score=52.36  Aligned_cols=123  Identities=15%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccc
Q psy10696         33 VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGS  111 (174)
Q Consensus        33 ~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~  111 (174)
                      ++.++.+. +.|.+...+.++..++..+.+.+-+|.++.+++..|.++.+++.+...+.+.   +              .
T Consensus       287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---~--------------~  349 (495)
T PRK14995        287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF---S--------------T  349 (495)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---C--------------C
Confidence            44456665 9999999999999999988888877655544556677777766654332100   0              0


Q ss_pred             hhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        112 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       112 ~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ..+......++.-+-.|+...|......+.+++++++.+.|+..+ .|-+|...|+.+.|++
T Consensus       350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETM-AYELGAGLGIAIFGLL  410 (495)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            011111111122222333334555566678999999999988876 7778888888887764

>PRK10504 putative transporter; Provisional

Probab=94.13  E-value=0.0074  Score=52.24  Aligned_cols=140  Identities=11%  Similarity=0.123  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ..++++.++++...+.+.+    .++++.++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|.|..-.+.++.+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~----~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         13 WIVAFGFFMQSLDTTIVNT----ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHhHHHHHH----HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            4556677777776554443    3445566788886 8999999999999999998888877644444444566666666


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~r  159 (174)
                      .+...+.     +              + .+.    +.+..++.|++.....+...    +..++++++.+.|+......
T Consensus        89 ~~~~~~~-----~--------------~-~~~----l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (471)
T PRK10504         89 SLFCALS-----G--------------T-LNE----LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQ  144 (471)
T ss_pred             HHHHHHh-----C--------------C-HHH----HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            6543321     0              1 111    23456677777665544332    35778888888888776443


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                       +|..-+|.+.|++
T Consensus       145 -~g~~~g~~~~g~l  157 (471)
T PRK10504        145 -VGPLLGPALGGLL  157 (471)
T ss_pred             -HHHHhhhHHHHHH
Confidence             4667777776653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=94.11  E-value=0.032  Score=46.43  Aligned_cols=119  Identities=13%  Similarity=0.021  Sum_probs=68.2

Q ss_pred             CCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchh
Q psy10696         35 KNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        35 ~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      +++.+. +.+.+.+...++..++.++.+++.+|-.|-|.+-.+.++.++..+.....     .              ++.
T Consensus       268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~--------------~~~  328 (405)
T TIGR00891       268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-----G--------------ANV  328 (405)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-----C--------------Cch
Confidence            456665 89999999999999999999998776444344433333332221111000     0              001


Q ss_pred             HHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      +......++..+..+..........-+.+|+++++.+.|+.+.+.+ +|...+|.++|++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~g~~~~g~l  387 (405)
T TIGR00891       329 AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGN-LGGALAPIIGALL  387 (405)
T ss_pred             HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHH-HHHHHHHHHHHHH
Confidence            1111111222222222222222233357889999999999988665 5677899998875

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=94.03  E-value=0.01  Score=50.93  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ...+++-+++.+-...+ +...+   .++++++.+. +.|.+.+.+-++.+++.++.+.+.+|-.|-|.+-.+.++.+++
T Consensus        11 ~~~~~~~~~~~~d~~~~-~~~~~---~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332        11 IFLFILFIFSFLDRINI-GFAGL---TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             HHHHHHHHHHHhhhhhH-HHHHH---hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            34444555555533322 22222   5567888886 9999999999999999999998877644333556778888888


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~~r  159 (174)
                      +++..+.     +              + ..    .+.+..++.|++....++...    +..++++|+.++|+......
T Consensus        87 ~~~~~~~-----~--------------~-~~----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  142 (412)
T TIGR02332        87 STATMFA-----T--------------G-PE----SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMP  142 (412)
T ss_pred             HHHHHHh-----c--------------C-HH----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            7765442     0              1 11    123456677777776655443    35777889999999887554


Q ss_pred             hhccCcchhhhhc
Q psy10696        160 GLAFIPGPIIYGA  172 (174)
Q Consensus       160 llg~IP~Pi~fG~  172 (174)
                       +|.+.+|.+-|+
T Consensus       143 -~g~~~~~~~~~~  154 (412)
T TIGR02332       143 -VTMALGLILSGY  154 (412)
T ss_pred             -HHHHHHHHHHHH
Confidence             456666665443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=93.98  E-value=0.012  Score=49.73  Aligned_cols=135  Identities=12%  Similarity=0.128  Sum_probs=83.4

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      +..+..++.++-...+ +..   +.+++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|.+-.+.++.+++.
T Consensus        19 ~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   94 (406)
T PRK11551         19 LCFLVALLEGLDLQSA-GVA---APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFS   94 (406)
T ss_pred             HHHHHHHHHHHHHHHH-HHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            3445566666644332 222   235567788885 99999999999999999999998887444445556666666665


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHh
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCG  160 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rl  160 (174)
                      ++..+.     +              + .+    .+.+..++.|++....++..    .+.+++|+|+.+.|+.+... .
T Consensus        95 ~~~~~~-----~--------------~-~~----~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~  149 (406)
T PRK11551         95 LATAQA-----W--------------D-FP----SLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGV-P  149 (406)
T ss_pred             HHHHHh-----c--------------c-HH----HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-H
Confidence            543321     0              1 11    12345666676655544333    34577888999998887644 3


Q ss_pred             hccCcchhh
Q psy10696        161 LAFIPGPII  169 (174)
Q Consensus       161 lg~IP~Pi~  169 (174)
                      +|...+|.+
T Consensus       150 ~g~~~~~~~  158 (406)
T PRK11551        150 FGGALASVI  158 (406)
T ss_pred             HHHHHHHHH
Confidence            344445544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=93.91  E-value=0.025  Score=46.38  Aligned_cols=121  Identities=13%  Similarity=0.008  Sum_probs=73.9

Q ss_pred             cCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccch
Q psy10696         34 RKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSH  112 (174)
Q Consensus        34 ~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~  112 (174)
                      ++++.+. +.+.+.+...++..++.++.+++.+|-+|.+.+.++.++.+++.+...+.+.                 .+ 
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-  294 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM-----------------LN-  294 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc-----------------ch-
Confidence            3345554 8888999999999999999999887755555666666666666654433210                 00 


Q ss_pred             hHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        113 FMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       113 ~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ...+....++..+..|...+.......+.+++++++.+.|+...... +|...+|.+.|++
T Consensus       295 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l  354 (377)
T TIGR00890       295 DVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKA-VAGIFGGLIASHA  354 (377)
T ss_pred             hHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHH
Confidence            11121111122222222222222223346889999999999987654 6778888888764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=93.83  E-value=0.02  Score=54.88  Aligned_cols=148  Identities=15%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      +..+++++++..++...+......++.+.....+..+..+++.+.+.++..++.++.+++.+|-.|-|.+-++.++..++
T Consensus        11 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~   90 (1146)
T PRK08633         11 FLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGL   90 (1146)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHH
Confidence            44566777777665554444333333211111122247899999999999999999999988754434333333333333


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCce----eEEeeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNT----IIQFRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~----~lgl~~V~~~~sslylGi~~~~~r  159 (174)
                      +++..+.    ..   .          +..+.    +++..++.|++.+...    .+.-+.+++++++.++|+..+.. 
T Consensus        91 ~~~~~~~----~~---~----------~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-  148 (1146)
T PRK08633         91 TLLIVLA----YY---L----------GWFWL----AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFT-  148 (1146)
T ss_pred             HHHHHHH----HH---H----------ccHHH----HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHH-
Confidence            3222111    00   0          01111    2234444555444333    33445788999999999987744 


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                      .+|.+.||++.|++
T Consensus       149 ~ig~~lg~~l~~~l  162 (1146)
T PRK08633        149 IVAILAGTALFSFL  162 (1146)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45777777776654

>TIGR00893 2A0114 d-galactonate transporter

Probab=93.70  E-value=0.022  Score=46.71  Aligned_cols=150  Identities=17%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC-CCcceeeeehhhhhhhh
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK-GHKTKWVALGSIIMSIG   83 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~-~~~prwig~g~l~~~~g   83 (174)
                      .+++..++.......+.+....++.   +.++.+. +.+.+.+...++..++.++.+++.+| ++|++.+-.......++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLV---QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH---HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            3445555555555555544444443   3456664 88999999999999999888887665 23321111111111111


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                      .+.....-... +  .         . +..+.......++....+ ...+.+++..+.+|+++|+.+.|+...+. -+|.
T Consensus       296 ~~~~~~~~~~~-~--~---------~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~  360 (399)
T TIGR00893       296 GLVLSLLMFAT-N--Y---------V-NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLG-NLGG  360 (399)
T ss_pred             HHHHHHHHHHh-c--c---------c-hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHH-HHhh
Confidence            11100000000 0  0         0 111212222222222222 12333344445789999999999999866 5678


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      ..+|.+.|++
T Consensus       361 ~~~~~i~g~l  370 (399)
T TIGR00893       361 IVGPIVIGAI  370 (399)
T ss_pred             hhhhHHhhhh
Confidence            8899998875

>KOG2325|consensus

Probab=93.67  E-value=0.096  Score=46.76  Aligned_cols=140  Identities=19%  Similarity=0.273  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCccee-eeehhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKW-VALGSIIMS   81 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prw-ig~g~l~~~   81 (174)
                      ..+..+-++++++..+-+++...+|+.++.+.  -. ...|++.++..+|.++..+.-++...|..+-|| +-.|.++..
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~--A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~  113 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPT--ATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAI  113 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCC--CCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHH
Confidence            45667789999999998888888888776663  34 489999999999999999999998887665555 356777888


Q ss_pred             hhcccc-cccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEee-e----cCCCCchhHHHHHH
Q psy10696         82 IGCFLR-TYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFR-C----VSPEDKSLSIGITE  155 (174)
Q Consensus        82 ~g~~l~-~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~-~----V~~~~sslylGi~~  155 (174)
                      +|++++ ++....                ++  +.|+  ..++-++.|+|.+-.  ..+| |    -.++||+-+++...
T Consensus       114 ~g~llY~~l~~~~----------------~~--~~y~--mL~~R~l~Gvg~~n~--a~lR~Y~a~~s~~~dR~rA~a~~~  171 (488)
T KOG2325|consen  114 IGNLLYLALAYVP----------------NG--VKYL--MLVARILTGVGVGNF--AVLRAYIADASTVEDRPRAFAATS  171 (488)
T ss_pred             HHHHHHHHHHhcc----------------cc--hHHH--HHHHHHHcCcCcccH--HHHHHHHHhccCccchHHHHHHhh
Confidence            888877 333110                01  2233  456899999985432  2234 2    23455555555443


Q ss_pred             HHHHhhccCcchh
Q psy10696        156 ALGCGLAFIPGPI  168 (174)
Q Consensus       156 ~~~rllg~IP~Pi  168 (174)
                      . .+++|.+.||.
T Consensus       172 ~-~~vlg~ilGp~  183 (488)
T KOG2325|consen  172 G-GFVLGIILGPT  183 (488)
T ss_pred             h-HHHHHHHHhHH
Confidence            3 44556666654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=93.40  E-value=0.021  Score=48.34  Aligned_cols=140  Identities=12%  Similarity=0.109  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      .+.+..++...+.+.+++....+++|    .+.+. +.|.+.+...++..+...+...+.+|.++.|.+-+|.+..+++-
T Consensus       209 ~~l~~~~l~~~~~~~~~~~~~~~l~~----~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~  284 (382)
T TIGR00902       209 RFLAAVCLIQGAHAAYYGFSAIYWQA----AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            34455566566677777777777743    46675 89999888888888887777776666555566677777777665


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeee---cCCCCchhHHHHHHHHHHhh
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRC---VSPEDKSLSIGITEALGCGL  161 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~---V~~~~sslylGi~~~~~rll  161 (174)
                      +...+.                    ++.+    .+.+.|+++|+...-.++..+++   .+++++..+.|+.+++..-+
T Consensus       285 ~~~~~~--------------------~~~~----~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~  340 (382)
T TIGR00902       285 AIIGAI--------------------EAFP----LIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGG  340 (382)
T ss_pred             HHHHhH--------------------hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHH
Confidence            544322                    1111    12345777777666555555543   36677788888887666667


Q ss_pred             ccCcchhhhhcc
Q psy10696        162 AFIPGPIIYGAL  173 (174)
Q Consensus       162 g~IP~Pi~fG~~  173 (174)
                      |..-+|.+-|++
T Consensus       341 g~~~g~~~~G~l  352 (382)
T TIGR00902       341 LIAIFTAFAGFI  352 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777764

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00895 2A0115 benzoate transport

Probab=93.30  E-value=0.028  Score=46.48  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccc
Q psy10696         33 VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGS  111 (174)
Q Consensus        33 ~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~  111 (174)
                      +++++.+. +.+.+.+...++..++..+.+++.+|-+| |.+..+....++.+++....   . +              +
T Consensus       277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---~-~--------------~  337 (398)
T TIGR00895       277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGP-RVTALLLLLGAVFAVLVGST---L-F--------------S  337 (398)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHH---h-h--------------C
Confidence            45566665 88999999999999999999988776332 33333333333333222110   0 0              1


Q ss_pred             hhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhccC
Q psy10696        112 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL  174 (174)
Q Consensus       112 ~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~i  174 (174)
                       ........++..+..+.......+...+.+|+++|+.++|+...+.+ +|...||.+.|+++
T Consensus       338 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~G~ll  398 (398)
T TIGR00895       338 -PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGR-LGAIIGPILAGYLL  398 (398)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHhHHhcC
Confidence             11112222233344444455555566667899999999999988665 67888999999874

>PRK12307 putative sialic acid transporter; Provisional

Probab=92.97  E-value=0.02  Score=48.69  Aligned_cols=136  Identities=14%  Similarity=0.075  Sum_probs=85.4

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      ...++.+..++.......    .+..++++++.+. +.+.+.+.+.++..++.++.+.+.+|-.|-+++-++.++.++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~   97 (426)
T PRK12307         22 SAWLGYVFDGFDFMLIFY----IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT   97 (426)
T ss_pred             HHHHHHHHHHhHHHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            344555555654433222    2234567788885 99999999999999999999999887555455667778877777


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHHh
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGCG  160 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~rl  160 (174)
                      +...+.+                   + .+    .+.+..++.|++....++..    .+..++|+|+.+.|+... ..-
T Consensus        98 ~~~~~~~-------------------~-~~----~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~  152 (426)
T PRK12307         98 GLSGLAS-------------------G-VI----MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVS-GFG  152 (426)
T ss_pred             HHHHHHh-------------------H-HH----HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHH-HHh
Confidence            6544420                   0 11    12345566776665544433    235677888988888765 333


Q ss_pred             hccCcchhhh
Q psy10696        161 LAFIPGPIIY  170 (174)
Q Consensus       161 lg~IP~Pi~f  170 (174)
                      +|.+.+|.+.
T Consensus       153 lg~~~~~~l~  162 (426)
T PRK12307        153 IGNIIAAYFM  162 (426)
T ss_pred             HHHHHHHHHH
Confidence            4555555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=92.92  E-value=0.037  Score=48.77  Aligned_cols=144  Identities=11%  Similarity=0.028  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceeeeehhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWVALGSIIMS   81 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwig~g~l~~~   81 (174)
                      +.++++.++....+..+..+.-..|+++. ..++.+. +.|.+.+.+.++..++.++.+++.+|. .|.|-+-++.++.+
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~   90 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQ-AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM   90 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence            34556677777776666666666676421 1167775 999999999999999999999998873 44445567777777


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCC---CchhHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPE---DKSLSIGIT  154 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~---~sslylGi~  154 (174)
                      +|.++..+.+                   + .+.    +.++..+.|+|.....+..    -+..+++   +|+.+.++.
T Consensus        91 ~g~~~~~~~~-------------------~-~~~----~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~  146 (475)
T TIGR00924        91 LGHFMLAMSI-------------------Y-PDL----IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLF  146 (475)
T ss_pred             HHHHHHHhcc-------------------c-HhH----HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhH
Confidence            7776655431                   0 111    1233445555554433222    2234443   366677877


Q ss_pred             HHHHHhhccCcchhhhhcc
Q psy10696        155 EALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       155 ~~~~rllg~IP~Pi~fG~~  173 (174)
                      +...+ +|.+.||.+.|++
T Consensus       147 ~~~~n-iG~~ig~~l~g~l  164 (475)
T TIGR00924       147 YMSIN-IGSFISPLLAGVI  164 (475)
T ss_pred             HHHHH-HHHHHHHHHHHHH
Confidence            76554 5777788777654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=92.36  E-value=0.052  Score=47.19  Aligned_cols=123  Identities=14%  Similarity=0.173  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      .+-++.|..|..|  |+.  .+-++|+++.++.|. ..|.+.+.|.++.+++.++...+-+|-+|-|-+=....++.+|-
T Consensus        17 aLa~~~F~igttE--fv~--~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n   92 (394)
T COG2814          17 ALALAAFAIGTTE--FVP--VGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN   92 (394)
T ss_pred             HHHHHHHHHHhHH--HHH--HhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            3444555555433  333  345689999999996 99999999999999999999999998777665544555555554


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHH
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEA  156 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~  156 (174)
                      ++.++-                       ..|. ++.++.++.|+...-.+.++.    |-|+|++|+-++|+..+
T Consensus        93 ~l~alA-----------------------p~f~-~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~  144 (394)
T COG2814          93 LLSALA-----------------------PSFA-VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFT  144 (394)
T ss_pred             HHHHHh-----------------------ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHH
Confidence            443321                       1122 346788888888877776654    46999999999998875

>TIGR00889 2A0110 nucleoside transporter

Probab=92.30  E-value=0.012  Score=50.89  Aligned_cols=114  Identities=12%  Similarity=0.041  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHH
Q psy10696         40 VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFI  119 (174)
Q Consensus        40 ~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~l  119 (174)
                      ++.|.+.+...++..++..+...+.+|-.+-|++-++.++.+++..+..+.+..                ....    ..
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~----------------~~~~----~~  310 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE----------------YFGY----AL  310 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc----------------hhhH----HH
Confidence            477999999999999998888887766544445566666666665444332000                0001    12


Q ss_pred             HHHHHHHhhcCccCceeE----EeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        120 LCLLNFFSATGRAGNTII----QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       120 f~~~q~l~g~g~tP~~~l----gl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      +.+.+++.|++....++.    .-+.+|+++++.+.|+.+....-+|.+.||++.|++
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l  368 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM  368 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            233455555554333322    234688899999999998767788888999999875

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=92.16  E-value=0.09  Score=45.53  Aligned_cols=63  Identities=13%  Similarity=0.262  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCC
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGK   66 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~   66 (174)
                      +..+++.|+++|++++..++....++.+.+++.+.+...|+..+...+|..++..+.+++..+
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345788999999999999999999999999888778889999999999999999998887543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=91.99  E-value=0.017  Score=53.98  Aligned_cols=124  Identities=11%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGC   84 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~   84 (174)
                      ++.++.+..|+-. ..++...+   .+++.++.+. +.+++.+.+.+|.+++.++.+++..|-.|.+++-++.++.++++
T Consensus       171 i~~l~~~~~g~d~-~~is~ilp---~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~  246 (742)
T TIGR01299       171 VLGLALMADGVEV-FVVGFVLP---SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFA  246 (742)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            3444455444422 22333333   4456788886 99999999999999999999999887555566666777777766


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCCchhHHHHHHHH
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPEDKSLSIGITEAL  157 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~sslylGi~~~~  157 (174)
                      ++..+.                    ++.+.    ++++.++.|++.+..+++..    +..+++.|+..+++..+.
T Consensus       247 ll~afa--------------------~s~~~----llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~  299 (742)
T TIGR01299       247 FFSSFV--------------------QGYGF----FLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF  299 (742)
T ss_pred             HHHHHH--------------------hhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            654322                    01111    22345555555544443333    357788888888876553

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00897 2A0118 polyol permease family

Probab=91.97  E-value=0.063  Score=45.69  Aligned_cols=142  Identities=13%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             HHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeee-ehhhhhhhhccc
Q psy10696          9 ISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVA-LGSIIMSIGCFL   86 (174)
Q Consensus         9 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig-~g~l~~~~g~~l   86 (174)
                      +..+++..+..++.+....|++    +.+.+. +.+.+.+...++..++.++.+++.+|.+|.|++. .+.+..++.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~p~~~~----~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~  304 (402)
T TIGR00897       229 MVRIINTIGLFGFAVFLPMFVA----ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA  304 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence            3444555544444444445553    346664 7888888888999999999999888755545442 333333443322


Q ss_pred             ccc-cccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCc
Q psy10696         87 RTY-TNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIP  165 (174)
Q Consensus        87 ~~l-~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP  165 (174)
                      ..+ +.  ...             ++....+...+..+....+.  .|.... ++..+|++|+.+.|+.+...+ +|.+.
T Consensus       305 l~~~~~--~~~-------------~~~~~~~~~~~~~G~~~~~~--~~~~~~-~~~~~~~~~g~~~g~~~~~~~-lg~~~  365 (402)
T TIGR00897       305 LYYIPQ--HFG-------------HSFAVALIIAIALGIFLAGY--VPLAAV-FPTLAPKHKGAAMSVLNLSAG-LSAFL  365 (402)
T ss_pred             HHHHHH--ccC-------------CcHHHHHHHHHHHHHHHHHH--HHHHHH-HHhhCcchhHHHHHHHHHHHH-HHHHH
Confidence            211 10  000             01011112222223222222  333322 234677899999999887654 45667


Q ss_pred             chhhhhcc
Q psy10696        166 GPIIYGAL  173 (174)
Q Consensus       166 ~Pi~fG~~  173 (174)
                      +|.+.|.+
T Consensus       366 gp~i~g~l  373 (402)
T TIGR00897       366 APAIAVLF  373 (402)
T ss_pred             HHHHHHHH
Confidence            99888865

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=91.88  E-value=0.12  Score=43.53  Aligned_cols=129  Identities=16%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             cCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccch
Q psy10696         34 RKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSH  112 (174)
Q Consensus        34 ~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~  112 (174)
                      ++++.+. +.+.+.....++..++.++.+++.+|-.|-+.+.++..+++++.+...+....-..  ..+        ...
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~  381 (481)
T TIGR00879       312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT--GSS--------KSS  381 (481)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC--Ccc--------cch
Confidence            4456664 77888888888888888888888776444344455566666665554421100000  000        000


Q ss_pred             hHHHHHHHHHHHHHhhcCccCceeEE-eeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        113 FMWFIFILCLLNFFSATGRAGNTIIQ-FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       113 ~~~f~~lf~~~q~l~g~g~tP~~~lg-l~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ...++...++.....+.+..|..... .+.+++++|+.+.|+.....+ +|.+.+|.++|++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-lg~~i~~~~~~~~  442 (481)
T TIGR00879       382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANW-LANFIVGFLFPTM  442 (481)
T ss_pred             hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            12222222233334445555555443 457888899999999987554 5777788877754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=91.67  E-value=0.069  Score=48.03  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             HhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccc
Q psy10696         13 VLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTN   91 (174)
Q Consensus        13 ~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~   91 (174)
                      +-++..++++.+-.-+.   .+.++.+. ..|++.++..+|.+++.++.+.+..+.++.|.+..+.+..++..+..++.+
T Consensus       229 ~~~l~~~a~~aLlPl~a---~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~  305 (524)
T PF05977_consen  229 LFNLFASAVWALLPLFA---RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP  305 (524)
T ss_pred             HHHHhhhHHHHhhhHHH---HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch
Confidence            33444444555432222   23456665 899999999999999999999988776677788888888887766655431


Q ss_pred             cccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhh
Q psy10696         92 CSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG  171 (174)
Q Consensus        92 c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG  171 (174)
                                          +.+.....+++.-+....-.++..+...+.+|++.++-.+++..++... +.-.|..++|
T Consensus       306 --------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g-~~~lGsll~G  364 (524)
T PF05977_consen  306 --------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG-GMPLGSLLWG  364 (524)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH-HHHHHHHHHH
Confidence                                1111111112222222222344445555688888888888887764432 2223455555


Q ss_pred             c
Q psy10696        172 A  172 (174)
Q Consensus       172 ~  172 (174)
                      .
T Consensus       365 ~  365 (524)
T PF05977_consen  365 F  365 (524)
T ss_pred             H
Confidence            4

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=91.66  E-value=0.2  Score=42.94  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCccee-eeehhhhhhhhcc
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKW-VALGSIIMSIGCF   85 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prw-ig~g~l~~~~g~~   85 (174)
                      .+..+.+..+..++.+...+++++.  ..+.+ .+.+.+.+...++..++.++.++..+|-.+.|+ +....+..+++. 
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-  324 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSF--NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-
Confidence            3444445454555556566667542  23445 488999999999999999999999887433343 223333333322 


Q ss_pred             cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe-eecCCCCchhHHHHHHHHHHhhccC
Q psy10696         86 LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF-RCVSPEDKSLSIGITEALGCGLAFI  164 (174)
Q Consensus        86 l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl-~~V~~~~sslylGi~~~~~rllg~I  164 (174)
                      .....    .+              +.......+...  .+......+...... ...++|+++.+.|+.+.+.+ +|.+
T Consensus       325 ~~~~~----~~--------------~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~-~g~~  383 (412)
T TIGR02332       325 LLASA----TD--------------HNLIQLLGIIMA--SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGN-IGSA  383 (412)
T ss_pred             HHHHh----cC--------------CHHHHHHHHHHH--HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhh-hhhh
Confidence            11110    00              001111111111  111111223222222 25788899999999999777 4888


Q ss_pred             cchhhhhcc
Q psy10696        165 PGPIIYGAL  173 (174)
Q Consensus       165 P~Pi~fG~~  173 (174)
                      .+|.++|.+
T Consensus       384 ~~p~~~g~i  392 (412)
T TIGR02332       384 LSPFLIGIL  392 (412)
T ss_pred             hhhhhcccc
Confidence            899888865

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=91.65  E-value=0.087  Score=50.90  Aligned_cols=145  Identities=12%  Similarity=0.043  Sum_probs=82.2

Q ss_pred             ccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCC-C
Q psy10696         21 YWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPN-G   98 (174)
Q Consensus        21 ~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~-~   98 (174)
                      +.+....|+.   ..++.+. +.|.+.+.+.+|.+++.++.+.+..+..+.+++..+.++.+++.+...+..-.-... .
T Consensus       244 ~~~~~p~~~~---~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (1140)
T PRK06814        244 VLSQLPLLAK---ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA  320 (1140)
T ss_pred             HHHHhHHHHH---HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence            3444455553   3456664 999999999999999999999987655555666667776666555333210000000 0


Q ss_pred             cc--ccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696         99 MA--TQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus        99 ~~--~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                      ..  .......  .+ .+.+....++.-+..++...|..++..+.+++++++.++|+..++. .+|...+|++.|.
T Consensus       321 ~~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~-~~~~~ig~~~~g~  392 (1140)
T PRK06814        321 QLKSILVFLSK--RH-GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN-AAFMVAGTIILAL  392 (1140)
T ss_pred             cccchhhhhcc--cc-cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH-HHHHHHHHHHHHH
Confidence            00  0000000  01 1222222222234445555667777778899999999999988754 4444555555554

>PRK10133 L-fucose transporter; Provisional

Probab=91.58  E-value=0.036  Score=48.21  Aligned_cols=142  Identities=11%  Similarity=0.075  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhh
Q psy10696          2 FSVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIM   80 (174)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~   80 (174)
                      .+++.+.+.-++.|+....    ....+++++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.+-|-+-.|.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~----~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNL----NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4677777777888886532    2334567788999996 9999999999999999999998877644434556788888


Q ss_pred             hhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEee----ecCCCCchhHHHHHHH
Q psy10696         81 SIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFR----CVSPEDKSLSIGITEA  156 (174)
Q Consensus        81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~----~V~~~~sslylGi~~~  156 (174)
                      ++++++....   ...              ++..    .+.++.++.|+|.....+..-+    ..+++++...+++.+.
T Consensus       102 ~~~~~l~~~~---~~a--------------~~~~----~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~  160 (438)
T PRK10133        102 ALGAALFWPA---AEI--------------MNYT----LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT  160 (438)
T ss_pred             HHHHHHHHHH---Hhc--------------CCHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHH
Confidence            8887664211   000              1111    2345666777776555444333    3344445455666554


Q ss_pred             HHHhhccCcchhh
Q psy10696        157 LGCGLAFIPGPII  169 (174)
Q Consensus       157 ~~rllg~IP~Pi~  169 (174)
                      .. -+|...||++
T Consensus       161 ~~-~~G~~~g~~~  172 (438)
T PRK10133        161 FN-SFGAIIAVVF  172 (438)
T ss_pred             HH-HHHHHHHHHH
Confidence            32 2355555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=91.58  E-value=0.058  Score=44.55  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             cccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCcc
Q psy10696         32 NVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCG  110 (174)
Q Consensus        32 ~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~  110 (174)
                      ++++++.+. +.|.+.+.+.++.+++.++.+.+.+|-.|-|++-++.++.+++.+...+.+                   
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~-------------------   88 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-------------------   88 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            567888886 999999999999999999999998875554566677777777766544320                   


Q ss_pred             chhHHHHHHHHHHHHHhhcCccCc---eeEEeeecCCCCchhHHHHHHHH---HHhhccCcchhh
Q psy10696        111 SHFMWFIFILCLLNFFSATGRAGN---TIIQFRCVSPEDKSLSIGITEAL---GCGLAFIPGPII  169 (174)
Q Consensus       111 ~~~~~f~~lf~~~q~l~g~g~tP~---~~lgl~~V~~~~sslylGi~~~~---~rllg~IP~Pi~  169 (174)
                      ++.+.    +.++.++.|++....   ..+.-+..++|+|+...++....   ...+|...+|.+
T Consensus        89 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        89 QSYSV----LLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             hhHHH----HHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            01111    123445555554322   22222357788999999987643   334444444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=91.42  E-value=0.033  Score=48.54  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCC
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGAC  105 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C  105 (174)
                      .+++++.+.++.+. +.+.+.+.+-++..++..+.+.+.+|-.|-|++-.+.++.++++++..+.+              
T Consensus        40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------------  105 (455)
T TIGR00892        40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS--------------  105 (455)
T ss_pred             hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh--------------
Confidence            35667788899885 999999999988888888888887775555566667777777766543320              


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcCccCc----eeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        106 PADCGSHFMWFIFILCLLNFFSATGRAGN----TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       106 ~~~C~~~~~~f~~lf~~~q~l~g~g~tP~----~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                           + .+...   ....++.|++....    ..+..++. +++|+.++|+..... -+|...+|++.|++
T Consensus       106 -----~-~~~l~---~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~r~~a~g~~~~~~-~~g~~~~~~l~~~l  166 (455)
T TIGR00892       106 -----N-VIELY---LTAGFITGLGLAFNFQPSLTMLGKYF-YRRRPLANGLAMAGS-PVFLSTLAPLNQYL  166 (455)
T ss_pred             -----h-HHHHH---HHHHHHHHhcchhhhhHHHHHHHHHH-HhhHHHHHHHHHhcc-cHHHHHHHHHHHHH
Confidence                 1 11111   11224445544432    22222345 578999999988644 33445566665543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=91.36  E-value=0.078  Score=43.44  Aligned_cols=144  Identities=13%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceee-eehhhh-hhhh
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWV-ALGSII-MSIG   83 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwi-g~g~l~-~~~g   83 (174)
                      .+..++.......+......++.   ++++.+. +.+.+.+...++..++.++.++..+|. +|.|+. ...... ..++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  298 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLT---QEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS  298 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            34444444444444444444443   3456664 889999999999999999888887652 333322 211111 1111


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                      .......     .            -.+........+..+....+ ..........+.+|+++|+.+.|+..... -+|.
T Consensus       299 ~~~~~~~-----~------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~  359 (379)
T TIGR00881       299 LLVYWLN-----P------------AANPLMDLICLFALGFLVYG-PQMLIGVIASELAPKKAAGTAAGFVGFFA-YLGG  359 (379)
T ss_pred             HHHHhcC-----c------------chhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhcCcchhHHHHHHHHHhh-hhhh
Confidence            1111000     0            00111112222223322111 11222233445789999999999998755 4556


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      ..+|.+.|.+
T Consensus       360 ~~~~~~~g~l  369 (379)
T TIGR00881       360 ILAGLPLGYL  369 (379)
T ss_pred             hhhhhhHHHH
Confidence            6788888865

>TIGR00901 2A0125 AmpG-related permease

Probab=91.34  E-value=0.074  Score=44.11  Aligned_cols=141  Identities=12%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHh-hhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWD-VGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~-ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      .+.+..++...+.....+....+++|    ++.+. +.|.+...+. ++..++.++.+++.+|-.|-|++-++.++.+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       213 LLLLLIVLYKLGDSAATVLTTLFLLD----MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            33444444555555555666666654    45665 8888777655 577788888888877655445555566666655


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~r  159 (174)
                      ..+..+.......++ .  +      .++.+......++..+..+....+..++..+.+|+|+++-+.|+.+...+
T Consensus       289 ~~~~~~~~~~~~~~~-~--~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       289 NAGFVWLASNGHHDG-I--T------FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhcCcccc-c--c------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            443332100000000 0  0      01112222223334455555566666677778999999999999887654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=91.14  E-value=0.15  Score=49.11  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=67.2

Q ss_pred             CCCch-h-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccch
Q psy10696         35 KNKMP-V-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSH  112 (174)
Q Consensus        35 ~~~~s-~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~  112 (174)
                      .++.+ . +.|.+.+...++.+++..+.+++..|..+-+.+.++.+.++++.+...+..                   + 
T Consensus       262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-  321 (1146)
T PRK08633        262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-------------------S-  321 (1146)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-------------------h-
Confidence            34555 5 789999999999999999999988765444455566666666655443321                   1 


Q ss_pred             hHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHh
Q psy10696        113 FMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCG  160 (174)
Q Consensus       113 ~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rl  160 (174)
                      .+..+..+++..+..++...+..+...+.+++++++.++|+..++..+
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~l  369 (1146)
T PRK08633        322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNV  369 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHH
Confidence            111222222223344444455556666778999999999988876553

>PRK11043 putative transporter; Provisional

Probab=91.05  E-value=0.056  Score=45.67  Aligned_cols=62  Identities=10%  Similarity=0.038  Sum_probs=47.6

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccccc
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRT   88 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~   88 (174)
                      +.+++.+++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|++-.+.++.+++++...
T Consensus        27 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   89 (401)
T PRK11043         27 PAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML   89 (401)
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence            45567778888885 999999999999999999999988764444455566666766666544

>TIGR00901 2A0125 AmpG-related permease

Probab=90.99  E-value=0.057  Score=44.79  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=67.9

Q ss_pred             ccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC------CCcceeeeehhhhhhhhcccccccccccCCCCccccC
Q psy10696         31 DNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK------GHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQG  103 (174)
Q Consensus        31 ~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~------~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~  103 (174)
                      ...|+++.+. +.|.+... .+...+ ..+.+.+.+|      ++|..|+-.+.++.++..+...+-+.           
T Consensus        13 ~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----------   79 (356)
T TIGR00901        13 YWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----------   79 (356)
T ss_pred             HHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----------
Confidence            4456778885 99988644 333333 3344433333      46666877666666665443333210           


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        104 ACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       104 ~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                            ..+.+....+.++..+.......+...+..+.+++|+|+.+.|+.....+ +|.+.+|.+.+++
T Consensus        80 ------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l  142 (356)
T TIGR00901        80 ------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYR-AGMLLSGSLALVL  142 (356)
T ss_pred             ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHH-HHHHHHHHHHHHH
Confidence                  01122222222222333333334444455667899999999999876554 4777777766543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=90.96  E-value=0.05  Score=45.93  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=84.7

Q ss_pred             HHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhh-hhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccc
Q psy10696         12 TVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDV-GTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTY   89 (174)
Q Consensus        12 ~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~i-g~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l   89 (174)
                      ++..++.+..++....|+.|    .+.+. +.|.+.....+ +..++..+.+.+.+|-.+.|++-.+.++.+...+....
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~----~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  293 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVD----AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFA  293 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHh----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455556665566653    36675 88998877654 55566677777766655556665555554333322211


Q ss_pred             cccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCC-CCchhHHHHHHHHHHhhccCcchh
Q psy10696         90 TNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSP-EDKSLSIGITEALGCGLAFIPGPI  168 (174)
Q Consensus        90 ~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~-~~sslylGi~~~~~rllg~IP~Pi  168 (174)
                      .. ....            ... .........+..+..|...++.++...+..++ ++++...+...... -+|.+.+|.
T Consensus       294 ~~-~~~~------------~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~lg~~~g~~  358 (390)
T TIGR02718       294 QA-AFWL------------APG-IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTR-DLGELIASS  358 (390)
T ss_pred             HH-Hccc------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHH-HHHHHHHHH
Confidence            10 0000            001 11112223445666777777777777777665 78899999988765 567888888


Q ss_pred             hhhcc
Q psy10696        169 IYGAL  173 (174)
Q Consensus       169 ~fG~~  173 (174)
                      +.|++
T Consensus       359 ~~G~l  363 (390)
T TIGR02718       359 IAGYL  363 (390)
T ss_pred             HHHHH
Confidence            88864

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10504 putative transporter; Provisional

Probab=90.86  E-value=0.052  Score=46.94  Aligned_cols=148  Identities=14%  Similarity=0.090  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ...+.+.++..++.+....+..-|+++   .++.+ .+.|.+.....++...+..+...+.+|-+|.|.+-.+.+..+++
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        264 SLGLAGSFAGRIGSGMLPFMTPVFLQI---GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALV  340 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence            334455555555443332223223322   23445 48888888888888777777777777655555555677767766


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                      .++..+..    . .           ++ .+.....+++..+..+....+...+..+.+++++++.+.|+..+ .+-+|.
T Consensus       341 ~~~~~~~~----~-~-----------~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~g~  402 (471)
T PRK10504        341 SLLFMLVA----L-L-----------GW-YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSM-IMQLSM  402 (471)
T ss_pred             HHHHHhcc----c-c-----------cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHH-HHHHHH
Confidence            65544321    0 0           01 11111111112244444555555555667899999999999865 555577


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      ..||.+.|++
T Consensus       403 ~ig~~i~g~l  412 (471)
T PRK10504        403 SIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=90.83  E-value=0.049  Score=44.62  Aligned_cols=106  Identities=18%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             eecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCC
Q psy10696         28 YLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACP  106 (174)
Q Consensus        28 ~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~  106 (174)
                      .+...+++++.+. +.|.+.+.+.++.+++.++.+.+.+|-.|-|.+-++.++.+++++...+.                
T Consensus        25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~----------------   88 (377)
T TIGR00890        25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA----------------   88 (377)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH----------------
Confidence            3456677888886 99999999999999999999998776444455567777777777654432                


Q ss_pred             CCccchhHHHHHHHHHHHHHhhcCccCceeEEeee---cCCCCchhHHHHHHHH
Q psy10696        107 ADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRC---VSPEDKSLSIGITEAL  157 (174)
Q Consensus       107 ~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~---V~~~~sslylGi~~~~  157 (174)
                          ++.+.    +.+...+.|++.+..+......   ..||+|+.+.++....
T Consensus        89 ----~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (377)
T TIGR00890        89 ----DSLAA----LYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGG  134 (377)
T ss_pred             ----HHHHH----HHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHh
Confidence                01111    1234445666655443333221   1246788888887663

>PRK15011 sugar efflux transporter B; Provisional

Probab=90.55  E-value=0.092  Score=44.56  Aligned_cols=79  Identities=14%  Similarity=0.241  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHH-hhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAW-DVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~-~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      .-.+.+..++.+++.+.+.+....++   .++++.+. +.|.+.+.. -++..+........+..++|-+++..+.+..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l---~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~   93 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFL---TDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGV   93 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            34567779999998887777666655   56778875 999997655 44666666656663333444444544444444


Q ss_pred             hhcc
Q psy10696         82 IGCF   85 (174)
Q Consensus        82 ~g~~   85 (174)
                      ++..
T Consensus        94 ~~~~   97 (393)
T PRK15011         94 LACT   97 (393)
T ss_pred             HHHH
Confidence            4443

>TIGR00896 CynX cyanate transporter

Probab=90.52  E-value=0.091  Score=43.63  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             eeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccc
Q psy10696         26 VAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL   86 (174)
Q Consensus        26 ~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l   86 (174)
                      .+.++++.++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|++-++.+..+++.+.
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILI   81 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            356778888999885 9999999999999999999999887644444555666665555543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=90.45  E-value=0.032  Score=52.22  Aligned_cols=112  Identities=20%  Similarity=0.307  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHH
Q psy10696         41 VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFIL  120 (174)
Q Consensus        41 ~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf  120 (174)
                      ..........++.+++.++.+++..|-.|-+.+..+.++.++++++..+.     .              + ....+.+.
T Consensus       596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~--------------s-~~~ll~~~  655 (742)
T TIGR01299       596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----N--------------S-ESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----c--------------c-HHHHHHHH
Confidence            34555677778888888888888776444445667777777777665432     0              0 11122222


Q ss_pred             HHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        121 CLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       121 ~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ++..++.+...+..+...-...|++.|+.++|+..++.| +|.+.||.+.|.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~r-lGaiigp~i~g~L  707 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCK-AAAVLGILIFGSF  707 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            333333333333334343446888999999999998777 6788899988864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=90.29  E-value=0.054  Score=45.71  Aligned_cols=118  Identities=16%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             CCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchh
Q psy10696         35 KNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        35 ~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      +.+.+. +.|.+.+.+.++..++.++.+++.+|..|.|.+-.+.+..+++.+...+.     +              +..
T Consensus       249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~--------------~~~  309 (406)
T PRK11551        249 GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----P--------------SFA  309 (406)
T ss_pred             hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----C--------------cHH
Confidence            346664 88999999999999999998888766433333333333333333322211     0              000


Q ss_pred             HHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ..+...+..+- ..+...+..+++..+.+++++|+..+|+...+.+ +|...+|.+.|++
T Consensus       310 ~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~~~g~l  367 (406)
T PRK11551        310 GMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR-LGSMAGPLLAGQL  367 (406)
T ss_pred             HHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh-HHHHHHhhhHhhh
Confidence            11111111221 1111223334444557899999999999988765 4667799998876

>PRK09528 lacY galactoside permease; Reviewed

Probab=90.27  E-value=0.039  Score=47.12  Aligned_cols=113  Identities=10%  Similarity=-0.004  Sum_probs=68.5

Q ss_pred             Cch-hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHH
Q psy10696         37 KMP-VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMW  115 (174)
Q Consensus        37 ~~s-~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~  115 (174)
                      +.+ .+.|.+.+...++..++..+.+.+.+|-.|.|.+-++.++.+++.++..+.     +              + .+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----~--------------~-~~~  317 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----T--------------G-PLE  317 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----c--------------c-HHH
Confidence            445 488999998888888888888888777555566666666666665554432     0              1 111


Q ss_pred             HHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        116 FIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       116 f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      +    .+.+++.+.+.....+    ..-+..+++.++...+..+.+..-+|.+.+|.+.|++
T Consensus       318 ~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l  375 (420)
T PRK09528        318 V----SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL  375 (420)
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence            1    1223344443322222    1223467777776655534446778899999988875

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=90.26  E-value=0.064  Score=45.22  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=46.9

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccccc
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRT   88 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~   88 (174)
                      +.++++.++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-.+.++.+++.+...
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   91 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL   91 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            34556678888886 999999999999999999999988875444455566666666665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=90.25  E-value=0.017  Score=40.28  Aligned_cols=103  Identities=18%  Similarity=0.305  Sum_probs=56.6

Q ss_pred             HHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHH
Q psy10696         46 SSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNF  125 (174)
Q Consensus        46 ~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~  125 (174)
                      .+.+.++..++..+..+..+|.+|.|.+-.+..+..++.+...+.     +              + .+.+.    +..+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~--------------~-~~~~~----~~~~   59 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----S--------------N-ITVLI----IARF   59 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----c--------------c-HHHHH----HHHH
Confidence            345566777777777777666544454455555555555443321     0              1 11111    2233


Q ss_pred             HhhcCcc----CceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        126 FSATGRA----GNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       126 l~g~g~t----P~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      +.|++..    .......+.+++++|+...|+..... -+|...+|.+.|++
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~  110 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGI-ALGPLLGPPLGGVL  110 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhH-HHHHHHhHHhHHHH
Confidence            3333333    22333345678888999999887644 45566677666653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=90.22  E-value=0.076  Score=45.66  Aligned_cols=120  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCC
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGAC  105 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C  105 (174)
                      +.+.++.+.++.+. +.+...+.+-++.+++.++.+.+.+|-.|-|.+-.+.++.+++++...+.     +         
T Consensus        37 p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~---------  102 (413)
T PRK15403         37 PGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----T---------  102 (413)
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----C---------
Confidence            44556778888886 99999999999999999999888777444445566777777776654432     0         


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcCccCceeEE---e-eecCCCCchhHHHHHHHHHHhhccCcchhhhh
Q psy10696        106 PADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ---F-RCVSPEDKSLSIGITEALGCGLAFIPGPIIYG  171 (174)
Q Consensus       106 ~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg---l-~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG  171 (174)
                           + .+.    +.++.++.|++..-..+..   . +..+++++..++++..... -+|.+-||++.|
T Consensus       103 -----~-~~~----l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~lg~  161 (413)
T PRK15403        103 -----S-MTQ----FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIV-LVAPIIGPLSGA  161 (413)
T ss_pred             -----C-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                 1 111    1234444454432111111   1 2456677888888777653 334555565544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=90.15  E-value=0.09  Score=44.70  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=78.1

Q ss_pred             HHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC------CCcceeeeehhhh
Q psy10696          7 LLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK------GHKTKWVALGSII   79 (174)
Q Consensus         7 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~------~~~prwig~g~l~   79 (174)
                      |...-+.||+..+=.......|+    |+.+.|. ++|.+.+..-.  .+...+.+.+.+|      ++|.+|+-++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l----~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~   77 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWM----TVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVG   77 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHH
Confidence            45566778875443333333444    4557785 99999877764  5666666666554      3555688877777


Q ss_pred             hhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHH
Q psy10696         80 MSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        80 ~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~r  159 (174)
                      .++......+.+    +             +++.+.+..+.++..+.......+...+..+.+++|+|+.+.++.... .
T Consensus        78 ~~l~~~~l~~~~----~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g-~  139 (402)
T PRK11902         78 LAASIAAMAFCP----P-------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLG-Y  139 (402)
T ss_pred             HHHHHHHHHhcC----c-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHH-H
Confidence            766555433320    0             011222222212222333332233334445678999999999998753 3


Q ss_pred             hhccCcchhhhh
Q psy10696        160 GLAFIPGPIIYG  171 (174)
Q Consensus       160 llg~IP~Pi~fG  171 (174)
                      -+|.+-++.+.+
T Consensus       140 ~~g~i~g~~l~~  151 (402)
T PRK11902        140 RLAMLVSGGLAL  151 (402)
T ss_pred             HHHHHHHhHHHH
Confidence            345555555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=90.09  E-value=0.22  Score=42.81  Aligned_cols=53  Identities=11%  Similarity=0.199  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASF   57 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~   57 (174)
                      ..++++|++||+++++.++...+++.|..++.+.....+........|..++.
T Consensus       125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406        125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999887766555555555444444544443

>KOG3764|consensus

Probab=89.96  E-value=0.19  Score=44.11  Aligned_cols=107  Identities=15%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhccCCCC--CcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHH
Q psy10696         40 VVLGVMSSAWDVGTLASFLVSSYLGGKG--HKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFI  117 (174)
Q Consensus        40 ~~~g~i~~~~~ig~~~~~~~~s~~g~~~--~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~  117 (174)
                      +++|++.+++.+-+++.-.+++.+-.|-  +-|-.  +|..++....+++++.                    ++ +.  
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~--~Gl~vmf~sTilFafg--------------------~s-y~--  160 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMV--AGLFVMFLSTILFAFG--------------------NS-YP--  160 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccHHH--HHHHHHHHHHHHHHHc--------------------ch-hH--
Confidence            4999999999999999999988876652  33333  4555556666666544                    11 11  


Q ss_pred             HHHHHHHHHhhcCccCceeEEee-----ecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        118 FILCLLNFFSATGRAGNTIIQFR-----CVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       118 ~lf~~~q~l~g~g~tP~~~lgl~-----~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                       +.+++-.+.|+|.+-..|.|+.     +-++++|+..+|+..... -||.+.||++-|.+
T Consensus       161 -~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfi-slG~lvgPpfGGil  219 (464)
T KOG3764|consen  161 -MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFI-SLGVLVGPPFGGIL  219 (464)
T ss_pred             -HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHH-hccceecCCcccch
Confidence             3467899999999999998875     566677899999998744 56899999887753

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=89.64  E-value=0.035  Score=47.25  Aligned_cols=119  Identities=17%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             eeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCC
Q psy10696         27 AYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGAC  105 (174)
Q Consensus        27 ~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C  105 (174)
                      +.+++++++++.+. +.|.+.+.+-++.+++.++.+++.+|-.| |++-++.+...+.+.....      .   .     
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~gr-r~~~~~~~~~~~~~~~~~~------~---~-----   76 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFK-RWFLFGSLATFAAAAGRLL------D---P-----   76 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHH------H---h-----
Confidence            45567788999996 99999999999999999999999887443 3443333333332211000      0   0     


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcCccCce---eEEeeecCCCCchhHHHHHHHHHHhhccCcchhhh
Q psy10696        106 PADCGSHFMWFIFILCLLNFFSATGRAGNT---IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIY  170 (174)
Q Consensus       106 ~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~---~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~f  170 (174)
                           .+..    .+.+..++.|+|.....   +..-++.++|+|+.++|+.... .-+|.+.+|++-
T Consensus        77 -----~~~~----~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~-~~lG~~l~~~~~  134 (368)
T TIGR00903        77 -----FNYE----WLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFA-MYLGIIFALAAG  134 (368)
T ss_pred             -----ccHH----HHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                 0111    23456777787765321   1113468899999999988753 334555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=89.54  E-value=0.082  Score=45.99  Aligned_cols=72  Identities=21%  Similarity=0.435  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCC-CCcceeee
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGK-GHKTKWVA   74 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~-~~~prwig   74 (174)
                      .+..++++|++.|+..+.|++.+.++-.+++++.+..+-+|.+.....++..++..++++.|+. +||..+..
T Consensus       100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814         100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999875 68877554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=89.51  E-value=0.14  Score=41.66  Aligned_cols=67  Identities=24%  Similarity=0.439  Sum_probs=57.7

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCCCCcceee
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWV   73 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwi   73 (174)
                      .++++|+++|++.+...+...+++.|..++.+.+...|.......+|..++..+.+++.. ....||.
T Consensus        87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~~~~~~  153 (352)
T PF07690_consen   87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-YFGWRWA  153 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HCHHCCH
T ss_pred             HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-ccccccc
Confidence            688999999999999999999999999998777789999999999999999999998774 3334544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15075 citrate-proton symporter; Provisional

Probab=89.32  E-value=0.083  Score=45.50  Aligned_cols=121  Identities=9%  Similarity=0.085  Sum_probs=66.0

Q ss_pred             CCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcc-cccccccccCCCCccccCCCCCCccchh
Q psy10696         36 NKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF-LRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        36 ~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~-l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      ++.+. +.+.+...+.++..++..+.+++.+|-.|.|..-.+.+...+..+ ...+.    .++          +  . .
T Consensus       269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~----------~--~-~  331 (434)
T PRK15075        269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL----VAA----------P--S-F  331 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HcC----------C--c-h
Confidence            45564 788888888888888888888877664333332222222111111 10000    000          0  0 1


Q ss_pred             HHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ........+..+..+....+.+....+.+|+++|+.++|+.+.+.+.++...+|.+.|++
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            111111112223334433334444445789999999999988888887556689888865

>PRK09952 shikimate transporter; Provisional

Probab=89.23  E-value=0.31  Score=42.18  Aligned_cols=56  Identities=18%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVS   60 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~   60 (174)
                      ..++++|++||++.++.++...+++.|..++.+.+...+.....+.+|..++..+.
T Consensus       126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~  181 (438)
T PRK09952        126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV  181 (438)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999988888888877766656667777777777777765443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=89.01  E-value=0.11  Score=43.62  Aligned_cols=108  Identities=14%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHH
Q psy10696         41 VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFIL  120 (174)
Q Consensus        41 ~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf  120 (174)
                      ..|.+.+...++..++....+++.+|-.|.|.+-.+.+..+++.+...+.     +              + .+..    
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~--------------~-~~~~----  314 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----Q--------------T-PLQL----  314 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----c--------------c-HHHH----
Confidence            45677777777887777777777666444343334444444433322211     0              0 1111    


Q ss_pred             HHHHHHhhcCccCce----eEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        121 CLLNFFSATGRAGNT----IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       121 ~~~q~l~g~g~tP~~----~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      .+..++.|.+....+    +...+.+++++++...|+.... +-+|..-||.+.|++
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~~gp~~~G~l  370 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSF-RDIGNVTGPLMGAAI  370 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHH-HHHHHHhhHHHHHHH
Confidence            122333343333222    2223456778888888887764 556788888888764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=88.99  E-value=0.085  Score=45.75  Aligned_cols=147  Identities=19%  Similarity=0.328  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceee-eehhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWV-ALGSIIMS   81 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwi-g~g~l~~~   81 (174)
                      +.+|++..++.++..+.+++....|++|+-.   .+. ..|.+.+...++=.....+...+-.| .++||+ -++.+..+
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg---~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~  284 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGG---YSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYA  284 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence            4567788888899899999999888865432   343 66766666555555555555554443 444443 23332221


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeee----cCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRC----VSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~----V~~~~sslylGi~~~~  157 (174)
                      +=-.++++     ..             ++ .+....+..++|+++|..-.-.+..+.+|    +|++.|+-++|+...+
T Consensus       285 vR~~l~a~-----~~-------------~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~  345 (400)
T PF03825_consen  285 VRWLLYAY-----FS-------------DP-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL  345 (400)
T ss_pred             HHHHHHHH-----hc-------------CC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            11111111     00             01 12223445678999999887777777664    7889999999999998


Q ss_pred             HHhhccCcchhhhhcc
Q psy10696        158 GCGLAFIPGPIIYGAL  173 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~~  173 (174)
                      ..-+|...|..+.|++
T Consensus       346 ~~Glg~~iG~~igG~l  361 (400)
T PF03825_consen  346 SFGLGGAIGSLIGGWL  361 (400)
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            8888888888888875

>PRK09952 shikimate transporter; Provisional

Probab=88.97  E-value=0.094  Score=45.38  Aligned_cols=123  Identities=12%  Similarity=0.057  Sum_probs=64.1

Q ss_pred             CCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchh
Q psy10696         35 KNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        35 ~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      .++.+. +...+.....+...++..+.++..+|-.|.|++-.+.++..+..+...+.    ...            .+..
T Consensus       280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~  343 (438)
T PRK09952        280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA----LEA------------QSIF  343 (438)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----HHc------------CChH
Confidence            344453 33333334444455555666777666555555545544433333222111    000            0011


Q ss_pred             HHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      .......++..+..+...++.+.+.-+.+|++.|....|+.+.+.+.+|...+|.+.|++
T Consensus       344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l  403 (438)
T PRK09952        344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAAL  403 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            111111222233333333444444445688888998999988888888888899988875

>PRK03893 putative sialic acid transporter; Provisional

Probab=88.90  E-value=0.13  Score=44.72  Aligned_cols=119  Identities=13%  Similarity=0.089  Sum_probs=69.9

Q ss_pred             CCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchh
Q psy10696         35 KNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHF  113 (174)
Q Consensus        35 ~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~  113 (174)
                      +++.+. +.|.+.+.+.++..++.++.+++.+|..|.|++..+.++.+++.+.....     .+             ...
T Consensus       305 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~~  366 (496)
T PRK03893        305 DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----GG-------------ANV  366 (496)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----cc-------------cHH
Confidence            556675 99999999999999999999998776444445444554444443322111     00             011


Q ss_pred             HHHHHHHHHHHHHhhcCccCce-eEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        114 MWFIFILCLLNFFSATGRAGNT-IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       114 ~~f~~lf~~~q~l~g~g~tP~~-~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      + ......+.....+.+..+.. ++....+++++++..+|+.+.+.. +|...||.+.|++
T Consensus       367 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~lgp~l~g~l  425 (496)
T PRK03893        367 W-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGA-LGGALAPILGALI  425 (496)
T ss_pred             H-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhh-HHHHHHHHHHHHH
Confidence            1 11111112212233332222 222346788899999999887665 5777788888764

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.73  E-value=0.13  Score=35.14  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             cccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccccccc
Q psy10696         30 DDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYT   90 (174)
Q Consensus        30 ~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~   90 (174)
                      ...+++.+++. +.|.+.+.+.+|.++|.+..++.-.+.++.|.+-.+.+...+..+..+++
T Consensus        16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567778885 99999999999999999999987776677777777777777666655543

Note that many members are hypothetical proteins.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=88.68  E-value=0.16  Score=44.66  Aligned_cols=135  Identities=19%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhhcccccccceeeeeeccc--ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDN--VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      .+..++.++.|.- ....+...+.+.+.  +.....++ +.+.+.+.+.++..++.++.+.+.+|-.|-+.+-++.++..
T Consensus        19 ~~~~~~~~~~g~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~   97 (502)
T TIGR00887        19 VIAGVGFFTDSYD-LFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMI   97 (502)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            3455566666663 33333333333321  11233454 78999999999999999999999887433334456777777


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~  157 (174)
                      +++++..+.+.   .          .+. .   .+ ..++++.++.|++....++    ...+..|+++|+.+.++.+..
T Consensus        98 v~~~~~~~~~~---~----------~~~-~---~~-~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~  159 (502)
T TIGR00887        98 IATVASGLSPG---S----------SPK-S---VM-ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAM  159 (502)
T ss_pred             HHHHHHHHccC---c----------ccc-h---HH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            77665544210   0          001 0   01 1234556666666654443    334578999999999988764


Q ss_pred             H
Q psy10696        158 G  158 (174)
Q Consensus       158 ~  158 (174)
                      .
T Consensus       160 ~  160 (502)
T TIGR00887       160 Q  160 (502)
T ss_pred             H
Confidence            3

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=88.65  E-value=0.15  Score=44.14  Aligned_cols=144  Identities=9%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             HHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceee-e-ehhhhhhhhc
Q psy10696          9 ISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWV-A-LGSIIMSIGC   84 (174)
Q Consensus         9 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwi-g-~g~l~~~~g~   84 (174)
                      +..++......++......|+.   ++++.+. +.+.+...+.++..++.++.+++.+|- +++|+. . +...+..++.
T Consensus       260 l~~~~~~~~~~~~~~~~P~~l~---~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~  336 (452)
T PRK11273        260 IANVFVYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            3343433333334444445553   3355664 888888888888888888888887753 333432 1 1122222222


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccC
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFI  164 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~I  164 (174)
                      +.....     .            .++.......++.++....+.. ........+.+|+++++.+.|+...+..+-+.+
T Consensus       337 ~~~~~~-----~------------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  398 (452)
T PRK11273        337 IVYWLN-----P------------AGNPTVDMACMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV  398 (452)
T ss_pred             HHHHHh-----c------------ccChHHHHHHHHHHHHHHHhHH-HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHH
Confidence            211111     0            0011111122222333222111 011122346788999999999998877666566


Q ss_pred             cchhhhhcc
Q psy10696        165 PGPIIYGAL  173 (174)
Q Consensus       165 P~Pi~fG~~  173 (174)
                      -+|.+.|++
T Consensus       399 ~g~~v~g~l  407 (452)
T PRK11273        399 AASAIVGYT  407 (452)
T ss_pred             hhhhhHHHH
Confidence            678888764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=88.63  E-value=0.14  Score=43.24  Aligned_cols=139  Identities=16%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             HHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcc
Q psy10696          7 LLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         7 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~   85 (174)
                      +++..++.+.+...+.+....|++|    .+.+. +.|.+.+...++..+...+.....+|.++.|.+.++.+..+++.+
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~  285 (382)
T PRK11128        210 FLLCVSLLQGSHAAYYGFSAIYWQA----AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWG  285 (382)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHH----CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            3444455445455556666667743    35564 889988877777777777776665553333444556666555443


Q ss_pred             cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEee---ecCCCCchhHHHHHHHHHHhhc
Q psy10696         86 LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFR---CVSPEDKSLSIGITEALGCGLA  162 (174)
Q Consensus        86 l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~---~V~~~~sslylGi~~~~~rllg  162 (174)
                      +..+.                    ++.+.    +.+.+++.|++..-.++...+   ..+++++..+.+.........|
T Consensus       286 ~~~~~--------------------~~~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  341 (382)
T PRK11128        286 LMGST--------------------TALPW----LIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGS  341 (382)
T ss_pred             HHHhh--------------------hhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHH
Confidence            33221                    01121    133555556554333332222   2455556667777766666677


Q ss_pred             cCcchhhhhcc
Q psy10696        163 FIPGPIIYGAL  173 (174)
Q Consensus       163 ~IP~Pi~fG~~  173 (174)
                      ...||++.|++
T Consensus       342 ~~ig~~i~G~l  352 (382)
T PRK11128        342 IAIMTVLSGFL  352 (382)
T ss_pred             HHHHHHHHHHH
Confidence            77788888765

>TIGR00883 2A0106 metabolite-proton symporter

Probab=88.53  E-value=0.62  Score=38.28  Aligned_cols=58  Identities=21%  Similarity=0.250  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhc
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY   62 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~   62 (174)
                      ..++++|+++|++.+...+...+++.|..++.+.+...+.......+|+.++..+...
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  154 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL  154 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999888888888888887777778888888888888888766544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2533|consensus

Probab=88.41  E-value=0.34  Score=43.42  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhcc-------CCCCCcceeeeeh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYL-------GGKGHKTKWVALG   76 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~-------g~~~~~prwig~g   76 (174)
                      +-.+++.|+++|+.+++.++-.+.++..--||.+.....|+..++..+|++++.++.+.+       +-.+||=-++--|
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G  213 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG  213 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH
Confidence            345778899999999999999999999999988888899999999999999999988874       2234554445566


Q ss_pred             hhhhhhhcccc
Q psy10696         77 SIIMSIGCFLR   87 (174)
Q Consensus        77 ~l~~~~g~~l~   87 (174)
                      .+.+..|-+.+
T Consensus       214 ~i~~~~gi~~f  224 (495)
T KOG2533|consen  214 VITLVLGIVVF  224 (495)
T ss_pred             HHHHHHHheEE
Confidence            66666554444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=88.13  E-value=0.11  Score=44.75  Aligned_cols=143  Identities=13%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             HHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh---hc
Q psy10696          9 ISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI---GC   84 (174)
Q Consensus         9 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~---g~   84 (174)
                      +..+++..+..++.+....|+++   ..+.+. +.+.+.+.+.++..++..+.+++.+|..+.|+.-.+.+...+   +.
T Consensus       258 ~~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  334 (438)
T TIGR00712       258 IANVFVYLLRYGVLDWSPTYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAV  334 (438)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH---ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHH
Confidence            34444444434444555555543   245564 888888888888888888888877663222222222222211   11


Q ss_pred             ccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCc-eeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         85 FLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGN-TIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        85 ~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~-~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                      +.....     .   .         .+....+..++.++...  .+..+. .....+..++++++.+.|+.+....+.|.
T Consensus       335 ~~~~~~-----~---~---------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~  395 (438)
T TIGR00712       335 IVYWMN-----P---A---------GNPLVDMICMIVIGFLI--YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  395 (438)
T ss_pred             HHHHhc-----C---C---------CchHHHHHHHHHHHHHH--ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhh
Confidence            111110     0   0         00011122222233211  111111 11233567889999999999887777667


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      ..+|.+.|++
T Consensus       396 ~~gp~l~G~l  405 (438)
T TIGR00712       396 VAASAIVGYT  405 (438)
T ss_pred             hhcchhHHHH
Confidence            8899988865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=88.13  E-value=0.56  Score=39.83  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=68.9

Q ss_pred             cCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-----CcceeeeehhhhhhhhcccccccccccCCCCccccCCCCC
Q psy10696         34 RKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-----HKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPA  107 (174)
Q Consensus        34 ~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-----~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~  107 (174)
                      +.++.+. +.|.+.+..-+..++..++.+++.+|.     +|-+|+-++.++.+++.+...+...  ..   .       
T Consensus        28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~--~~---~-------   95 (437)
T TIGR00792        28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD--FS---A-------   95 (437)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC--CC---c-------
Confidence            3567775 999999999999999999999997752     2223787888888877666544310  00   0       


Q ss_pred             CccchhHHHHHHHHHHHHHhhcCccCceeEEeeec-CCCCchhHHHHHHH
Q psy10696        108 DCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCV-SPEDKSLSIGITEA  156 (174)
Q Consensus       108 ~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V-~~~~sslylGi~~~  156 (174)
                        ......+....++..+...+...|...+..+-. ++++|+...+....
T Consensus        96 --~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~  143 (437)
T TIGR00792        96 --TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRF  143 (437)
T ss_pred             --chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHH
Confidence              011122222223334455555677777665543 56788888776654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=87.90  E-value=0.27  Score=42.04  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             cCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        132 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       132 tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      .+..++..+.+|+++++.++|+... ..-+|..-||.+.|++
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRL-GLALGGAIGYIGGGWL  356 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHH-HHHHHHHhcccchHHH
Confidence            3444555568999999999998766 5666888888888875

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=87.88  E-value=0.4  Score=42.08  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLV   59 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~   59 (174)
                      ..++++|++||++.++.++.+.+++.|..++.+.....++......+|..++..+
T Consensus       119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642        119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999998876666666777776666666665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=87.29  E-value=0.41  Score=40.67  Aligned_cols=145  Identities=15%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~   85 (174)
                      .+++..++..++.........-+.++.   .+.+.+.+.+.+...++..++.++.+.+.+|-.|.+.+-++.++.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~  302 (437)
T TIGR00792       226 ILCLAYLFYNLAFNIKNGVQVYYFTYV---LGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL  302 (437)
T ss_pred             HHHHHHHHHHHHHHHHcchhheeEeee---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            344555555554444433333344322   22234667777777888888888888877664444544556666666555


Q ss_pred             cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecC-------CCCchhHHHHHHHHH
Q psy10696         86 LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVS-------PEDKSLSIGITEALG  158 (174)
Q Consensus        86 l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~-------~~~sslylGi~~~~~  158 (174)
                      ...+.+    +              + .+.+....++..+..+......+++.-+.+|       ++.++.+.|+.....
T Consensus       303 ~~~~~~----~--------------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  363 (437)
T TIGR00792       303 IFFFAG----S--------------N-LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR  363 (437)
T ss_pred             HHHHcc----h--------------h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence            443321    0              1 1122222223333333333333333333333       456788999888754


Q ss_pred             HhhccCcchhhhhcc
Q psy10696        159 CGLAFIPGPIIYGAL  173 (174)
Q Consensus       159 rllg~IP~Pi~fG~~  173 (174)
                       -+|...+|.+.|++
T Consensus       364 -~~g~~lg~~i~g~l  377 (437)
T TIGR00792       364 -KLGQALAGFLVGLI  377 (437)
T ss_pred             -HHHHHHHHHHHHHH
Confidence             44666777777764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03699 putative transporter; Provisional

Probab=87.20  E-value=0.12  Score=43.82  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=44.3

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      .++.++...++.++.+....|++   ++++.+. +.|.+.+.+.++..++.++.+++.+|-++-|++-...++.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~p~~l~---~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        211 AIAALLYILAQLTFISWVPEYAQ---KKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV  283 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            34444444444444555556663   3557775 889999999999999999988887653333444333333333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=86.59  E-value=0.18  Score=44.20  Aligned_cols=106  Identities=15%  Similarity=0.008  Sum_probs=65.9

Q ss_pred             eecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCC
Q psy10696         28 YLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACP  106 (174)
Q Consensus        28 ~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~  106 (174)
                      .++.++++++.+. +.|.+.+.+-++..++.++.+++.+|-.+.+.+..+.++.+++.++..+.+               
T Consensus        58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------------  122 (476)
T PLN00028         58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS---------------  122 (476)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc---------------
Confidence            3456678888886 999999999999999999999888764433455667777776655443320               


Q ss_pred             CCccchhHHHHHHHHHHHHHhhcCccCc---eeEEeeecCCCCchhHHHHHHHH
Q psy10696        107 ADCGSHFMWFIFILCLLNFFSATGRAGN---TIIQFRCVSPEDKSLSIGITEAL  157 (174)
Q Consensus       107 ~~C~~~~~~f~~lf~~~q~l~g~g~tP~---~~lgl~~V~~~~sslylGi~~~~  157 (174)
                          + ...+.    +..++.|++.+..   ....-+..++++|+.+.|+....
T Consensus       123 ----s-~~~l~----~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~  167 (476)
T PLN00028        123 ----S-ATGFI----AVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGW  167 (476)
T ss_pred             ----C-HHHHH----HHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHH
Confidence                1 11111    1223334333321   11112357788999999987653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=86.50  E-value=0.2  Score=43.05  Aligned_cols=123  Identities=9%  Similarity=-0.089  Sum_probs=64.4

Q ss_pred             cCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccch
Q psy10696         34 RKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSH  112 (174)
Q Consensus        34 ~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~  112 (174)
                      +.++.+. +.+.+.+...+...++..+.+++.+|-+|.|++-++.++.++..+...+.   ...   .       +  + 
T Consensus       272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~~~---~-------~--~-  335 (432)
T PRK10406        272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA---LQN---V-------S--S-  335 (432)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH---HHc---C-------C--c-
Confidence            4456665 77888887777777777777887776554454433333222222111100   000   0       0  0 


Q ss_pred             hHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhc
Q psy10696        113 FMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA  172 (174)
Q Consensus       113 ~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~  172 (174)
                      ....+.+..++.+..+....+.+...-+..|+|.|+.+.|+.+.+.+++.....|.+.++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~  395 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS  395 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH
Confidence            111111122233333332233333333568899999999999998887533346766553

>PRK03545 putative arabinose transporter; Provisional

Probab=85.74  E-value=0.21  Score=42.11  Aligned_cols=62  Identities=15%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCC
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGG   65 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~   65 (174)
                      +..+.++|+++|++.+.+++...++++|..++.+.....|+......+|.+++..+..+..+
T Consensus        97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34567889999999988888888888888776666678888888888888888777766543

>KOG0254|consensus

Probab=84.65  E-value=0.97  Score=40.03  Aligned_cols=80  Identities=13%  Similarity=0.238  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCC--CCc-ceee-eehhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGK--GHK-TKWV-ALGSII   79 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~--~~~-prwi-g~g~l~   79 (174)
                      +..+.++|+++|+|.+....+...|++|+.++...............+|..++++........  +|| +-|+ .+..++
T Consensus       142 ~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~  221 (513)
T KOG0254|consen  142 WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVI  221 (513)
T ss_pred             HHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999876555677777777777777775555544332  344 2223 255555


Q ss_pred             hhhh
Q psy10696         80 MSIG   83 (174)
Q Consensus        80 ~~~g   83 (174)
                      ..++
T Consensus       222 ~~~~  225 (513)
T KOG0254|consen  222 LALG  225 (513)
T ss_pred             HHHH
Confidence            5555

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=84.31  E-value=0.29  Score=43.77  Aligned_cols=141  Identities=16%  Similarity=0.142  Sum_probs=83.6

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceeeeehhhhhhhhcc
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWVALGSIIMSIGCF   85 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwig~g~l~~~~g~~   85 (174)
                      +..++......-+..++-..|+.   +.++.+. +.+.+.+.+.....++.++.+++.+|- .|-|.+-+|.+++++|.+
T Consensus        15 ~~~~~~e~fs~Yg~~~~L~~yL~---~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l   91 (493)
T PRK15462         15 VALQIWEYFSFYGMRALLILYLT---NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV   91 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence            33344444433334444455553   3467775 899999999999999999999998874 333456678888888776


Q ss_pred             cccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCc-cC-ceeEEeeecCCC--CchhHHHHHHHHHHhh
Q psy10696         86 LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGR-AG-NTIIQFRCVSPE--DKSLSIGITEALGCGL  161 (174)
Q Consensus        86 l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~-tP-~~~lgl~~V~~~--~sslylGi~~~~~rll  161 (174)
                      +...++       .         . .. ..+..   ++....|.|. .| ..++.-+..+++  +|.-+.++.+...+ +
T Consensus        92 ll~~~~-------~---------~-~~-~~~l~---l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n-l  149 (493)
T PRK15462         92 VLGASE-------I---------H-PS-FLYLS---LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN-V  149 (493)
T ss_pred             HHHHhh-------c---------c-hh-HHHHH---HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH-H
Confidence            443210       0         0 01 11211   1122233332 12 222222334443  58888999999888 5


Q ss_pred             ccCcchhhhhcc
Q psy10696        162 AFIPGPIIYGAL  173 (174)
Q Consensus       162 g~IP~Pi~fG~~  173 (174)
                      |...+|++.|++
T Consensus       150 G~~iap~l~g~L  161 (493)
T PRK15462        150 GSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHH
Confidence            888899988875

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=84.13  E-value=0.7  Score=39.84  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSS   61 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s   61 (174)
                      ..++++|+++|++.++.++...+++.|..++.+.....|.......+|..++.+...
T Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~  177 (479)
T PRK10077        121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY  177 (479)
T ss_pred             HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456799999999999999999999988888776666778877777777777655433

>TIGR00899 2A0120 sugar efflux transporter

Probab=83.71  E-value=0.19  Score=41.58  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=23.4

Q ss_pred             cCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        142 VSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       142 V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ..|+++..+.|+.....+ +|...+|.+.|++
T Consensus       316 ~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~~  346 (375)
T TIGR00899       316 LMPGRAGAATTLYTNTGR-VGWIIAGSVGGIL  346 (375)
T ss_pred             hCcchhhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            345566788999887666 7888889888864

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01272 gluP glucose/galactose transporter

Probab=83.10  E-value=0.72  Score=38.27  Aligned_cols=62  Identities=16%  Similarity=0.067  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccC
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLG   64 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g   64 (174)
                      ++..++++-++.|.|.+-.-+..-+|+.++.++.+.+...++..+++.+|..++.++.+.+-
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            46789999999999999999999999998887776667999999999999999999988764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=82.99  E-value=0.37  Score=42.34  Aligned_cols=121  Identities=12%  Similarity=-0.014  Sum_probs=61.5

Q ss_pred             cCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhccc-ccccccccCCCCccccCCCCCCccc
Q psy10696         34 RKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL-RTYTNCSCIPNGMATQGACPADCGS  111 (174)
Q Consensus        34 ~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l-~~l~~c~c~~~~~~~~~~C~~~C~~  111 (174)
                      +.++.+. +.+.+.+...++..++.++.+.+.+|-.|.+.+-++.+...++++. ....    ..             ++
T Consensus       279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~-------------~~  341 (490)
T PRK10642        279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----NS-------------NV  341 (490)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----hC-------------CC
Confidence            3445564 6666777788888888888888776633333333333322222211 1000    00             00


Q ss_pred             hhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        112 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       112 ~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ....+...+ +..+..+.+..+.....-+..|++.|+..+|+.+.+.++.| ..+|.+.|++
T Consensus       342 ~~~~~~~~~-~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l  401 (490)
T PRK10642        342 IGLIFAGLL-MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWL  401 (490)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            001111111 11222222222222222246788999999998777777765 5678777754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=82.13  E-value=0.9  Score=40.50  Aligned_cols=155  Identities=12%  Similarity=0.173  Sum_probs=85.8

Q ss_pred             HHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC-----CCcceeeeehhhhh
Q psy10696          7 LLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK-----GHKTKWVALGSIIM   80 (174)
Q Consensus         7 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~-----~~~prwig~g~l~~   80 (174)
                      +.++....|+-.+  +++-.++++-+.+..+.+. +.+.+.....+..++...+++++.+|     ++|..|+..|.+..
T Consensus         7 i~~~~~~~Giq~~--~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         7 LRVASVAAGVQFG--WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            3444444444211  3333333333334456675 99999999999999999999999874     45555766556665


Q ss_pred             hhhcccccccccccCCCCccccCCCCCCccc-hhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCc--hhHHHHHHHH
Q psy10696         81 SIGCFLRTYTNCSCIPNGMATQGACPADCGS-HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDK--SLSIGITEAL  157 (174)
Q Consensus        81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~-~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~s--slylGi~~~~  157 (174)
                      .++.++..+.......   ..++. ++.... ....++..+.+..+...+-+.|...+.-+.++++++  ..+.+++..+
T Consensus        85 ~~~l~ll~~~~~~~~~---~~~~~-~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~  160 (477)
T TIGR01301        85 AFAVILIGFAADIGHL---FGDNL-DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF  160 (477)
T ss_pred             HHHHHHHHhCchhhhh---ccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence            5555544432211100   00000 001111 112334444556677777788988888888888765  4677766543


Q ss_pred             HHhhccCcchh
Q psy10696        158 GCGLAFIPGPI  168 (174)
Q Consensus       158 ~rllg~IP~Pi  168 (174)
                      . -+|.+.|+.
T Consensus       161 ~-~lG~ilg~~  170 (477)
T TIGR01301       161 M-AIGNVLGYA  170 (477)
T ss_pred             H-HHHHHHHHH
Confidence            3 334444443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK12382 putative transporter; Provisional

Probab=81.84  E-value=0.57  Score=39.38  Aligned_cols=60  Identities=17%  Similarity=0.117  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhcc
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYL   63 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~   63 (174)
                      +..+.++|+++|++.+...+...+++.|..++.+...-.|........|.+++..+..+.
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l  171 (392)
T PRK12382        112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL  171 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999877766655555555544455555555555555555555555443

>PRK12307 putative sialic acid transporter; Provisional

Probab=81.67  E-value=0.72  Score=39.11  Aligned_cols=59  Identities=17%  Similarity=0.306  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhc
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY   62 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~   62 (174)
                      +..+.++|+++|++.+..++...+++.|..++.+.+...|+......+|+.++..+..+
T Consensus       106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307        106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            44678899999999999888888888887776666667777777778887777665544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=80.83  E-value=0.83  Score=40.02  Aligned_cols=146  Identities=18%  Similarity=0.119  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      +++.....-++-|+.    ..+...-+....+-|+++. |.+.+..++--|..+..+.-+++..|-...|=+-+|..+++
T Consensus        14 ~~v~~t~lFfl~G~~----~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a   89 (422)
T COG0738          14 AFVLLTSLFFLWGFI----TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA   89 (422)
T ss_pred             HHHHHHHHHHHHHHH----hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence            445555555666663    2344556667788999996 99999999999999999999998887555566668888888


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeee----cCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRC----VSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~----V~~~~sslylGi~~~~  157 (174)
                      +||.++.=          +.         +  ......|..+-++.+.|.+-+-|-+-.+    =|+++.+.=+.+... 
T Consensus        90 vg~~lF~p----------Aa---------~--~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~-  147 (422)
T COG0738          90 VGAALFWP----------AA---------S--SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQA-  147 (422)
T ss_pred             HHHHHHhh----------hh---------h--hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHH-
Confidence            99887630          00         0  0122234566777777777766666554    345566777777776 


Q ss_pred             HHhhccCcchhhhhccC
Q psy10696        158 GCGLAFIPGPIIYGALL  174 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~~i  174 (174)
                      ..=+|.+.+|++-+++|
T Consensus       148 fn~lGa~~gp~~g~~li  164 (422)
T COG0738         148 FNGLGAILGPLLGSSLI  164 (422)
T ss_pred             hhhhHHHHHHHHHHHHH
Confidence            45568888888877653

>PRK15075 citrate-proton symporter; Provisional

Probab=80.55  E-value=1.5  Score=37.76  Aligned_cols=57  Identities=12%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhc
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY   62 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~   62 (174)
                      .++++|+++|++.+..++....++.|..++.+.....++......+|..++..+...
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999998888777888888887777777777777666665555444443

>KOG2532|consensus

Probab=80.07  E-value=1.4  Score=39.10  Aligned_cols=59  Identities=19%  Similarity=0.319  Sum_probs=50.4

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccC
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLG   64 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g   64 (174)
                      .+++.|++||++++..++..-..+..-.++.+.+...+++.+..++|+++.....+++-
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc  188 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLC  188 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            56899999999999988888777777777777777999999999999999998888664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.98
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.54
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.47
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.89
2xut_A	524	Proton/peptide symporter family protein; transport	94.85
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	90.75
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	86.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	82.81

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.98  E-value=0.00013  Score=59.37  Aligned_cols=140  Identities=14%  Similarity=0.160  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG   83 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g   83 (174)
                      ..+++..++.+++.+.+.+    .+.+++++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|.+-++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   78 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIP----AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh----hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            4567777888876665444    3445677888885 9999999999999999999999988755545556777777777


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHH
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGC  159 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~r  159 (174)
                      .++..+.                    ++.+    .+.+..++.|++.+..++..    -+..++|+|+.+.|+... ..
T Consensus        79 ~~~~~~~--------------------~~~~----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  133 (375)
T 2gfp_A           79 TLVAVTT--------------------SSLT----VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNM-GI  133 (375)
T ss_dssp             HHHHHHH--------------------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHH-HH
T ss_pred             HHHHHHh--------------------ccHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHH-HH
Confidence            7665432                    1111    12345666666665544433    345788999999999876 44


Q ss_pred             hhccCcchhhhhcc
Q psy10696        160 GLAFIPGPIIYGAL  173 (174)
Q Consensus       160 llg~IP~Pi~fG~~  173 (174)
                      -+|.+.+|.+.|++
T Consensus       134 ~~g~~~~~~~~~~l  147 (375)
T 2gfp_A          134 LVSPLLAPLIGGLL  147 (375)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHhhHHHHHHH
Confidence            55777788877664

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.96  E-value=4.8e-05  Score=62.90  Aligned_cols=145  Identities=12%  Similarity=0.045  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696          3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS   81 (174)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~   81 (174)
                      .+..+++..++.|+..+...    +.+..++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|.+-++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLND----ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            35566677777777554322    23445677888885 99999999999999999999999888666667778888888


Q ss_pred             hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHH
Q psy10696         82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEAL  157 (174)
Q Consensus        82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~  157 (174)
                      ++.++..+..  ..               ++.+.    +.++.++.|++.+..++..    -+..++|+|+.++|+... 
T Consensus       103 ~~~~~~~~~~--~~---------------~~~~~----l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-  160 (438)
T 3o7q_A          103 LGAALFWPAA--EI---------------MNYTL----FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT-  160 (438)
T ss_dssp             HHHHHHHHHH--HT---------------TCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHH-
T ss_pred             HHHHHHHhcc--cc---------------ccHHH----HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHH-
Confidence            8887763210  00               11121    2345667777765555444    346889999999998876 


Q ss_pred             HHhhccCcchhhhhcc
Q psy10696        158 GCGLAFIPGPIIYGAL  173 (174)
Q Consensus       158 ~rllg~IP~Pi~fG~~  173 (174)
                      ..-+|.+.+|.+.|++
T Consensus       161 ~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A          161 FNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4556777788776654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.54  E-value=0.00021  Score=59.14  Aligned_cols=144  Identities=8%  Similarity=0.041  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI   82 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~   82 (174)
                      +...+++.++.++..+.+.+.    +..+.+++ .+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-++.++.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALA----MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHH----HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            445666777777755543333    33555666 675 999999999999999999999998876666677888888888


Q ss_pred             hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHHH
Q psy10696         83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEALG  158 (174)
Q Consensus        83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~~  158 (174)
                      +.++..+.... .+               +.+.+    .++.++.|++.+..++    +.-+..++|+|+.++|+... .
T Consensus       105 ~~~~~~~~~~~-~~---------------~~~~l----~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~  163 (451)
T 1pw4_A          105 VMLFMGFVPWA-TS---------------SIAVM----FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC-A  163 (451)
T ss_dssp             HHHHHHHCHHH-HS---------------SSSHH----HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH-H
T ss_pred             HHHHHHhhhhc-cc---------------cHHHH----HHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH-H
Confidence            88877652100 00               01112    2345555555544433    33346788999999999776 4


Q ss_pred             HhhccCcchhhhhcc
Q psy10696        159 CGLAFIPGPIIYGAL  173 (174)
Q Consensus       159 rllg~IP~Pi~fG~~  173 (174)
                      .-+|.+.+|.+.|++
T Consensus       164 ~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          164 HNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            556788888877653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.47  E-value=0.00039  Score=57.48  Aligned_cols=148  Identities=9%  Similarity=0.059  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC--Ccceeeeehhhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG--HKTKWVALGSIIMS   81 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~--~~prwig~g~l~~~   81 (174)
                      ..+++..+++..+..++.+....++.   +.++.+. +.|.+.+...++..++.++.+++.+|-  .|.+.+.++.++..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBT---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            44556667777766666666666664   3366775 999999999999999999999887764  33334444444444


Q ss_pred             -hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHh
Q psy10696         82 -IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCG  160 (174)
Q Consensus        82 -~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rl  160 (174)
                       ++.++..+.+    +             .+ .+......++.-+..+....+.+.+..+.+++++++.+.|+...+.++
T Consensus       332 ~~~~~~~~~~~----~-------------~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  393 (451)
T 1pw4_A          332 TIATIVYWMNP----A-------------GN-PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  393 (451)
T ss_dssp             HHHHHHTTSCC----T-------------TC-HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----c-------------cC-HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence             4444433320    0             01 121211111111222222233334455678889999999999998888


Q ss_pred             hccCcchhhhhcc
Q psy10696        161 LAFIPGPIIYGAL  173 (174)
Q Consensus       161 lg~IP~Pi~fG~~  173 (174)
                      +|...+|.+.|++
T Consensus       394 ~g~~~~~~~~g~l  406 (451)
T 1pw4_A          394 GGSVAASAIVGYT  406 (451)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7889999988865

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.89  E-value=0.0006  Score=57.37  Aligned_cols=144  Identities=10%  Similarity=0.034  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhcccccccceeeeeeccc--ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC-CCcceeeeehhhhh
Q psy10696          5 IILLISSTVLGIGSSTYWSLGVAYLDDN--VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK-GHKTKWVALGSIIM   80 (174)
Q Consensus         5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~-~~~prwig~g~l~~   80 (174)
                      ...++..++...+..+..+....|+++.  +++++.+. +.|.+.+.+.++..++.++.+++.+| -.|-|.+-++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~   95 (491)
T 4aps_A           16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI   95 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            3445566666665555555666676542  34578886 99999999999999999999999887 45555566788888


Q ss_pred             hhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCC--chhHHHHH
Q psy10696         81 SIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPED--KSLSIGIT  154 (174)
Q Consensus        81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~--sslylGi~  154 (174)
                      +++.++..+.+                   + .+.+    .++.++.|++.....+...    +..++++  |+.++++.
T Consensus        96 ~~~~~~~~~~~-------------------~-~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  151 (491)
T 4aps_A           96 MLGHIVLALPF-------------------G-ASAL----FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIF  151 (491)
T ss_dssp             HHHHHHHHSCC-------------------S-TTHH----HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhh-------------------h-HHHH----HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHH
Confidence            88877765431                   1 1111    2344555555554444332    3567777  66677766


Q ss_pred             HHHHHhhccCcchhhhhcc
Q psy10696        155 EALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       155 ~~~~rllg~IP~Pi~fG~~  173 (174)
                      .. ..-+|.+.+|.+.|++
T Consensus       152 ~~-~~~~g~~~~~~~~~~l  169 (491)
T 4aps_A          152 VF-GINLGAFIAPLIVGAA  169 (491)
T ss_dssp             HH-HHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHH
Confidence            65 4456777788777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.85  E-value=0.0037  Score=52.99  Aligned_cols=141  Identities=13%  Similarity=0.039  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcccccccceeeeeecccccCCC------chh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceeeeehh
Q psy10696          6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNK------MPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWVALGS   77 (174)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwig~g~   77 (174)
                      .+++.+++...+..+..+....|+.   ++++      .+. +.|.+.+.+.++..++.++.+++.+|- .|-|.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~   92 (524)
T 2xut_A           16 YIIASEACERFSFYGMRNILTPFLM---TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS   92 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3455666666655545555555553   3445      675 999999999999999999999998876 5545566777


Q ss_pred             hhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHH
Q psy10696         78 IIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGI  153 (174)
Q Consensus        78 l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi  153 (174)
                      ++.+++.++..+.+                   .+.+.+    .++.++.|++.+...+    +.-+.+++++|+.+.+.
T Consensus        93 ~~~~~~~~~~~~~~-------------------~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A           93 LIYCVGHAFLAIFE-------------------HSVQGF----YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             HHHHHHHHHHHHTS-------------------SCHHHH----HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHhc-------------------ccHHHH----HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence            77777777655431                   011211    2344555555544433    33346888888766655


Q ss_pred             ---HHHHHHhhccCcchhhhhcc
Q psy10696        154 ---TEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       154 ---~~~~~rllg~IP~Pi~fG~~  173 (174)
                         ... ..-+|.+.+|.+.|++
T Consensus       150 ~~~~~~-~~~~g~~~g~~~~~~l  171 (524)
T 2xut_A          150 FDMFYF-TINFGSFFASLSMPLL  171 (524)
T ss_dssp             HHHHHH-HHHHHHHHHHHTSTHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHH
Confidence               444 3445667777766643

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=90.75  E-value=0.045  Score=44.79  Aligned_cols=61  Identities=8%  Similarity=0.089  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccC
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLG   64 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g   64 (174)
                      +..++++|+++|++.+...+...+++.|..++.+.....|...+...+|..++..+.+++.
T Consensus       117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999988877777889999999999999998888765

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=86.15  E-value=0.26  Score=40.92  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhcc
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYL   63 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~   63 (174)
                      +..++++|+++|++.++.++.+.+|+.|..++.+.....+....+..+|..++.......
T Consensus       126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            345889999999999999999999999988877666677777777777777766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=82.81  E-value=0.38  Score=38.43  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCC
Q psy10696          4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGG   65 (174)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~   65 (174)
                      +..+.++|+++|++.+...+...+++.|..++.+.+...+.......+|..++..+.++..+
T Consensus        88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  149 (375)
T 2gfp_A           88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34677899999999999999888999888877777778888888888888888877776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.02
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	94.12
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	92.45

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.00024  Score=56.22  Aligned_cols=124  Identities=11%  Similarity=0.110  Sum_probs=79.5

Q ss_pred             ceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccc
Q psy10696         23 SLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMAT  101 (174)
Q Consensus        23 ~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~  101 (174)
                      +...+++.    +++.+. +.|++.+.+.++.+++.++.+++.+|-.|-|.+-++.++.+++.++..+-....       
T Consensus        45 ~~~~p~~~----~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------  113 (447)
T d1pw4a_          45 ALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------  113 (447)
T ss_dssp             HHHHHHTT----SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-------
T ss_pred             HHHHHHHH----HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-------
Confidence            34445443    357775 999999999999999999999998876555566788888888777665421100       


Q ss_pred             cCCCCCCccchhHHHHHHHHHHHHHhhcCccCce----eEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhh
Q psy10696        102 QGACPADCGSHFMWFIFILCLLNFFSATGRAGNT----IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG  171 (174)
Q Consensus       102 ~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~----~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG  171 (174)
                               ++...+    ++..++.|++.+..+    .+.-+..++++|+.++|+..... .+|.+.+|++.+
T Consensus       114 ---------~~~~~~----~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~i~~~~~~  173 (447)
T d1pw4a_         114 ---------SSIAVM----FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH-NVGGGIPPLLFL  173 (447)
T ss_dssp             ---------SSSSHH----HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH-HHHHTSHHHHHH
T ss_pred             ---------hhHHHH----HHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccccc-chhhhhhhhhhh
Confidence                     001112    223444444443333    33345688899999999887644 445666666544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.0037  Score=49.07  Aligned_cols=145  Identities=10%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCc-ceee-e-ehhhhhhhh
Q psy10696          8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHK-TKWV-A-LGSIIMSIG   83 (174)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~-prwi-g-~g~l~~~~g   83 (174)
                      ....++......++.+....++.   +.++.+. +.+...+...++..++.++.+++.+|..| ++.. . ....+..++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  331 (447)
T d1pw4a_         255 AIANVFVYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  331 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBT---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcchhhhhhhcc---cccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHH
Confidence            33444444444444454555553   3456665 89999999999999999998888765332 2221 2 111122222


Q ss_pred             cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhcc
Q psy10696         84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAF  163 (174)
Q Consensus        84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~  163 (174)
                      .+...+.     .            ..+ .+.....+++..+..+.......+...+.++++.++.+.|+...+.++.|.
T Consensus       332 ~~~~~~~-----~------------~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~  393 (447)
T d1pw4a_         332 TIVYWMN-----P------------AGN-PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  393 (447)
T ss_dssp             HHHTTSC-----C------------TTC-HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-----c------------ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            2211111     0            001 121111111111122211222333334568888899999999998899899


Q ss_pred             Ccchhhhhcc
Q psy10696        164 IPGPIIYGAL  173 (174)
Q Consensus       164 IP~Pi~fG~~  173 (174)
                      +.+|++.|++
T Consensus       394 ~~~~~~~g~~  403 (447)
T d1pw4a_         394 VAASAIVGYT  403 (447)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.0015  Score=49.98  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHH
Q psy10696         41 VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFIL  120 (174)
Q Consensus        41 ~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf  120 (174)
                      ..+...+...++..++..+...+.+|..+.+.+.++.++.+++.+...+.+                   + .+......
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~  319 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------------------S-ALEVVILK  319 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-------------------C-HHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc-------------------c-cchhhHHH
Confidence            777778888888888888888777665555566677777777666554421                   1 12222222


Q ss_pred             HHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696        121 CLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL  173 (174)
Q Consensus       121 ~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~  173 (174)
                      ++..+..+....+..+...+.+|+|.|+...|+...+.+-+|...+|.+.|++
T Consensus       320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233333334444445556789999999999887777888888899988875