Psyllid ID: psy10711

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MFIITFISYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF
cEEEEccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccEEEccccccEEEcccccEEEEcccccccEEEEEEEc
cEEEEEccccccccccccccccccEccccccHHHHHHHHHHHccHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcHHcccccHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEHHcccccEEEEccccccEEEEEcccEEccccccccccEEEEEEc
MFIITFISYRIKIIFWtvgpgltglknlgntcyINSILQclsntsplrEYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWagdsryfspqkfkVKHELVGKFKEEVGKMKRtfrgyeqqdsHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKstviccncqetsstfevfsnvslplpsndycslrvsf
MFIITFISYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRtfrgyeqqdsHEFLTILIDTLHEDLKesgekswgefrkKNKSIISELFYGQLKSTVICCNCQETSSTFEVfsnvslplpsndycslrvsf
MFIITFISYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF
*FIITFISYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDL******SWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYC******
*FI******R*******VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF
MFIITFISYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF
MFIITFISYRIKI****VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFIITFISYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
P40818 1118 Ubiquitin carboxyl-termin yes N/A 0.857 0.155 0.417 8e-38
Q80U87 1080 Ubiquitin carboxyl-termin yes N/A 0.857 0.161 0.417 2e-37
A6QR55 963 Ubiquitin carboxyl-termin no N/A 0.798 0.168 0.371 9e-32
P35123 962 Ubiquitin carboxyl-termin no N/A 0.798 0.168 0.366 1e-31
Q5RCD3 963 Ubiquitin carboxyl-termin no N/A 0.798 0.168 0.366 1e-31
Q13107 963 Ubiquitin carboxyl-termin no N/A 0.798 0.168 0.366 1e-31
Q8R5H1 981 Ubiquitin carboxyl-termin no N/A 0.847 0.175 0.369 2e-31
B2GUZ1 961 Ubiquitin carboxyl-termin no N/A 0.798 0.168 0.366 2e-31
F6Z5C0 982 Ubiquitin carboxyl-termin no N/A 0.847 0.175 0.364 2e-31
Q9R085 952 Ubiquitin carboxyl-termin no N/A 0.847 0.180 0.369 2e-31
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1 Back     alignment and function desciption
 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 113/211 (53%), Gaps = 37/211 (17%)

Query: 14  IFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSKTSG 68
           +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +    G
Sbjct: 768 VFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHK---G 824

Query: 69  KLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLT 128
           ++AEEF +I   LW G  RY SP+ FK+           +GK+   F GY QQDS E L 
Sbjct: 825 EVAEEFGIIMKALWTGQYRYISPKDFKIT----------IGKINDQFAGYSQQDSQELLL 874

Query: 129 ILIDTLHEDLKES-------------------GEKSWGEFRKKNKSIISELFYGQLKSTV 169
            L+D LHEDL ++                    E +W + ++ N+SII  LF GQ KSTV
Sbjct: 875 FLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTV 934

Query: 170 ICCNCQETSSTFEVFSNVSLPLPSNDYCSLR 200
            C  C + S TFE F  +SLPL S   C+L+
Sbjct: 935 QCLTCHKKSRTFEAFMYLSLPLASTSKCTLQ 965
Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2 Back     alignment and function description
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1 Back     alignment and function description
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 Back     alignment and function description
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 Back     alignment and function description
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 Back     alignment and function description
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1 Back     alignment and function description
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 Back     alignment and function description
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis GN=usp15 PE=2 SV=2 Back     alignment and function description
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
195389480 906 GJ23355 [Drosophila virilis] gi|19415149 0.847 0.189 0.458 1e-40
195569249 896 GD19401 [Drosophila simulans] gi|1941985 0.871 0.197 0.452 2e-40
195355562 896 GM15069 [Drosophila sechellia] gi|194129 0.871 0.197 0.452 2e-40
28571791 896 UBPY ortholog, isoform A [Drosophila mel 0.871 0.197 0.452 3e-40
21483568 896 SD04548p [Drosophila melanogaster] 0.871 0.197 0.452 3e-40
194899564 895 GG24410 [Drosophila erecta] gi|190651032 0.871 0.197 0.452 4e-40
195111414 908 GI10137 [Drosophila mojavensis] gi|19391 0.847 0.189 0.455 4e-40
195498419 895 GE25711 [Drosophila yakuba] gi|194182616 0.871 0.197 0.452 6e-40
328708865 792 PREDICTED: ubiquitin carboxyl-terminal h 0.857 0.219 0.482 7e-40
195038203 901 GH18183 [Drosophila grimshawi] gi|193894 0.822 0.185 0.462 8e-40
>gi|195389480|ref|XP_002053404.1| GJ23355 [Drosophila virilis] gi|194151490|gb|EDW66924.1| GJ23355 [Drosophila virilis] Back     alignment and taxonomy information
 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 123/194 (63%), Gaps = 22/194 (11%)

Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLI 77
           VG GLTGLKNLGNTCY+NSILQCLSNT  L E+ +++  ++  +  +KT+G++ EE   +
Sbjct: 567 VGRGLTGLKNLGNTCYMNSILQCLSNTPQLMEFCISDKYKNYISRRNKTNGQVIEEVAAL 626

Query: 78  FNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137
              LW G  +  + +  +            VG+ ++ FRG +QQDSHEFLTIL+D LH D
Sbjct: 627 IKELWNGQYKCVASRDLRYV----------VGQYQKIFRGVDQQDSHEFLTILMDWLHSD 676

Query: 138 LK-----------ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSN 186
           L+            + EK+W EF K  +SII  LFYGQ+KSTV C  C + S+T+E FSN
Sbjct: 677 LQTLRVPRKRDIISAAEKAWLEFTKSQESIIQHLFYGQIKSTVKCVTCTKESATYECFSN 736

Query: 187 VSLPLPSN-DYCSL 199
           +SL LP+N ++C L
Sbjct: 737 LSLELPANANFCYL 750

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195569249|ref|XP_002102623.1| GD19401 [Drosophila simulans] gi|194198550|gb|EDX12126.1| GD19401 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195355562|ref|XP_002044260.1| GM15069 [Drosophila sechellia] gi|194129561|gb|EDW51604.1| GM15069 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|28571791|ref|NP_650948.2| UBPY ortholog, isoform A [Drosophila melanogaster] gi|28381390|gb|AAF55858.2| UBPY ortholog, isoform A [Drosophila melanogaster] gi|384551736|gb|AFH97157.1| FI20021p1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|21483568|gb|AAM52759.1| SD04548p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194899564|ref|XP_001979329.1| GG24410 [Drosophila erecta] gi|190651032|gb|EDV48287.1| GG24410 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195111414|ref|XP_002000274.1| GI10137 [Drosophila mojavensis] gi|193916868|gb|EDW15735.1| GI10137 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195498419|ref|XP_002096515.1| GE25711 [Drosophila yakuba] gi|194182616|gb|EDW96227.1| GE25711 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|328708865|ref|XP_003243820.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195038203|ref|XP_001990549.1| GH18183 [Drosophila grimshawi] gi|193894745|gb|EDV93611.1| GH18183 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
FB|FBgn0038862 896 Ubpy "UBPY ortholog" [Drosophi 0.871 0.197 0.467 3.4e-37
UNIPROTKB|E1BF70 421 USP8 "Ubiquitin carboxyl-termi 0.857 0.413 0.448 4.6e-34
RGD|1304979 416 Usp8 "ubiquitin specific pepti 0.862 0.420 0.442 6e-32
UNIPROTKB|H7C189 621 USP4 "Ubiquitin carboxyl-termi 0.812 0.265 0.404 2.6e-31
UNIPROTKB|E9PCQ3 956 USP15 "Ubiquitin carboxyl-term 0.847 0.179 0.369 4.2e-29
UNIPROTKB|I3LRX7 489 I3LRX7 "Uncharacterized protei 0.847 0.351 0.369 1.5e-28
RGD|628795 952 Usp15 "ubiquitin specific pept 0.847 0.180 0.374 6.7e-28
MGI|MGI:101857 981 Usp15 "ubiquitin specific pept 0.847 0.175 0.374 7.1e-28
UNIPROTKB|F1NE88 963 USP4 "Ubiquitin carboxyl-termi 0.798 0.168 0.389 8.8e-28
UNIPROTKB|F1NE89 966 USP4 "Ubiquitin carboxyl-termi 0.798 0.167 0.389 8.8e-28
FB|FBgn0038862 Ubpy "UBPY ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 409 (149.0 bits), Expect = 3.4e-37, P = 3.4e-37
 Identities = 93/199 (46%), Positives = 125/199 (62%)

Query:    13 IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAE 72
             +I   VG GLTGLKNLGNTCY+NSILQCLSNT  L EY +++  ++  +  +KT+G++ E
Sbjct:   553 VIGQNVGRGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNKTNGQVIE 612

Query:    73 EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILID 132
             E   +   LW G  +Y    K     +L    +  VG+ ++ FRG +QQDSHEFLTIL+D
Sbjct:   613 EVAALIKELWNG--QY----KCVASRDL----RYVVGQYQKIFRGVDQQDSHEFLTILMD 662

Query:   133 TLHEDLK-----------ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTF 181
              LH DL+            + EK+W EF K  +S+I  LFYGQ+KSTV C  C + S+T+
Sbjct:   663 WLHSDLQTLHVPRQREMISASEKAWLEFTKAKESMILHLFYGQMKSTVKCVACHKESATY 722

Query:   182 EVFSNVSLPLPSN-DYCSL 199
             E FSN+SL LP N + C L
Sbjct:   723 ESFSNLSLELPPNSNVCQL 741
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP
GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP
GO:0005622 "intracellular" evidence=IDA
GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IGI
GO:0016579 "protein deubiquitination" evidence=IMP
GO:0004843 "ubiquitin-specific protease activity" evidence=IDA
UNIPROTKB|E1BF70 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304979 Usp8 "ubiquitin specific peptidase 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H7C189 USP4 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PCQ3 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LRX7 I3LRX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|628795 Usp15 "ubiquitin specific peptidase 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:101857 Usp15 "ubiquitin specific peptidase 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE88 USP4 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE89 USP4 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
pfam00443 313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 3e-44
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 4e-40
COG5533 415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-26
cd02661 304 cd02661, Peptidase_C19E, A subfamily of Peptidase 4e-25
cd02660 328 cd02660, Peptidase_C19D, A subfamily of Peptidase 9e-25
cd02674 230 cd02674, Peptidase_C19R, A subfamily of peptidase 7e-20
cd02667 279 cd02667, Peptidase_C19K, A subfamily of Peptidase 6e-19
cd02257 255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 1e-18
cd02659 334 cd02659, peptidase_C19C, A subfamily of Peptidase 2e-18
cd02658 311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-15
cd02663 300 cd02663, Peptidase_C19G, A subfamily of Peptidase 2e-15
cd02668 324 cd02668, Peptidase_C19L, A subfamily of Peptidase 6e-15
cd02671 332 cd02671, Peptidase_C19O, A subfamily of Peptidase 6e-15
cd02664 327 cd02664, Peptidase_C19H, A subfamily of Peptidase 3e-13
cd02669 440 cd02669, Peptidase_C19M, A subfamily of Peptidase 6e-13
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 3e-11
cd02657 305 cd02657, Peptidase_C19A, A subfamily of Peptidase 3e-09
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 3e-08
cd02666 343 cd02666, Peptidase_C19J, A subfamily of Peptidase 3e-08
pfam13423 296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 3e-08
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 2e-06
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 2e-06
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 4e-05
cd02662 240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-04
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information 
 Score =  149 bits (377), Expect = 3e-44
 Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 16/181 (8%)

Query: 20  PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
            G TGL NLGNTCY+NS+LQ L +  PLR+Y +     S       +  +L      +F+
Sbjct: 1   EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQN--SSELINPLGSLNQLPRALADLFH 58

Query: 80  MLWAGDSR--YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137
            L + +S+    SP+ F    + +GK   +       F GY QQD+HEFL  L+D LHED
Sbjct: 59  ALQSPNSKNASVSPKNFL---QALGKISPQ-------FSGYMQQDAHEFLLFLLDQLHED 108

Query: 138 LKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYC 197
           L    ++        N+S+I++LF GQL+S + C  C++ SST E FS++SLP+  +   
Sbjct: 109 LNSLKKRKSHAAE--NESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSV 166

Query: 198 S 198
            
Sbjct: 167 L 167

Length = 313
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
COG5560 823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02660 328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02658 311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
KOG1865|consensus 545 100.0
cd02657 305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02671 332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02663 300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02669 440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02668 324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02661 304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02666 343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 99.97
cd02659 334 peptidase_C19C A subfamily of Peptidase C19. Pepti 99.97
cd02664 327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 99.97
cd02667 279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 99.97
COG5533 415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 99.96
KOG0944|consensus 763 99.95
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 99.94
cd02662 240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 99.94
KOG1868|consensus 653 99.93
KOG1873|consensus 877 99.92
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 99.9
KOG1863|consensus 1093 99.89
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.88
KOG1867|consensus 492 99.87
KOG1866|consensus 944 99.86
KOG1870|consensus 842 99.86
cd02673 245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 99.85
cd02674 230 Peptidase_C19R A subfamily of peptidase C19. Pepti 99.84
PF13423 295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.81
cd02665 228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 99.79
cd02257 255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 99.74
KOG2026|consensus 442 99.7
KOG1871|consensus 420 99.68
cd02672 268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.46
KOG1872|consensus 473 99.45
KOG4598|consensus 1203 99.44
KOG1864|consensus 587 99.14
KOG1275|consensus 1118 98.77
KOG1864|consensus 587 98.49
cd02670 241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 98.29
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 96.05
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 92.12
PF08715320 Viral_protease: Papain like viral protease; InterP 90.98
KOG1871|consensus420 88.25
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-35  Score=239.77  Aligned_cols=166  Identities=42%  Similarity=0.790  Sum_probs=151.0

Q ss_pred             CCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hcccccc-CCCCchHHHHHHHHHHHHHhcCCCCcccCccchhh
Q psy10711         20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK   97 (203)
Q Consensus        20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~   97 (203)
                      .|.+||.|+||||||||.||||.|++.+|+++++.. ...++.. .-.-.+.++.++..|+++++.++..++.|..|   
T Consensus       263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~f---  339 (823)
T COG5560         263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF---  339 (823)
T ss_pred             ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHH---
Confidence            488999999999999999999999999999999877 4444442 23556789999999999999999999999999   


Q ss_pred             hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh----------------------hhHHhHHHHhhcCCC
Q psy10711         98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE----------------------SGEKSWGEFRKKNKS  155 (203)
Q Consensus        98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~----------------------~~~~~~~~~~~~~~~  155 (203)
                             +..++.++..|.++.|||.+||+.++||.||+.+.+                      .+++.|..+...+.+
T Consensus       340 -------K~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdS  412 (823)
T COG5560         340 -------KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDS  412 (823)
T ss_pred             -------HHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcc
Confidence                   999999999999999999999999999999999842                      577889999999999


Q ss_pred             ccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711        156 IISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND  195 (203)
Q Consensus       156 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~  195 (203)
                      +|.++|.|-+++++.|..|+.++.+++||.+|+||+|-..
T Consensus       413 iItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~  452 (823)
T COG5560         413 IITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSM  452 (823)
T ss_pred             cHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhh
Confidence            9999999999999999999999999999999999999753

>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1865|consensus Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944|consensus Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868|consensus Back     alignment and domain information
>KOG1873|consensus Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867|consensus Back     alignment and domain information
>KOG1866|consensus Back     alignment and domain information
>KOG1870|consensus Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG2026|consensus Back     alignment and domain information
>KOG1871|consensus Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1872|consensus Back     alignment and domain information
>KOG4598|consensus Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>KOG1275|consensus Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>KOG1871|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
3n3k_A 396 The Catalytic Domain Of Usp8 In Complex With A Usp8 9e-39
2gfo_A 396 Structure Of The Catalytic Domain Of Human Ubiquiti 5e-38
2y6e_A 367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-31
2hd5_A 359 Usp2 In Complex With Ubiquitin Length = 359 3e-27
2ibi_A 374 Covalent Ubiquitin-Usp2 Complex Length = 374 4e-27
3v6c_A 367 Crystal Structure Of Usp2 In Complex With Mutated U 4e-27
3nhe_A 348 High Resolution Structure (1.26a) Of Usp2a In Compl 7e-26
2y5b_A 370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-25
3mtn_A 373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 4e-25
3i3t_A 355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 5e-25
4fip_A 476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 3e-14
3mhh_A 476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 1e-13
3m99_A 471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 1e-13
3ihp_A 854 Covalent Ubiquitin-Usp5 Complex Length = 854 5e-09
2ayn_A 404 Structure Of Usp14, A Proteasome-Associated Deubiqu 5e-04
2f1z_A 522 Crystal Structure Of Hausp Length = 522 7e-04
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 114/214 (53%), Gaps = 37/214 (17%)
Query: 11  IKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +  +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct: 51  LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHK- 109
Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHE 125
             G++AEEF +I   LW G  RY SP+ FK+           +GK+   F GY QQDS E
Sbjct: 110 --GEVAEEFGIIMKALWTGQYRYISPKDFKI----------TIGKINDQFAGYSQQDSQE 157
Query: 126 FLTILIDTLHEDLKES-------------------GEKSWGEFRKKNKSIISELFYGQLK 166
            L  L+D LHEDL ++                    E +W + ++ N+SII  LF GQ K
Sbjct: 158 LLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217
Query: 167 STVICCNCQETSSTFEVFSNVSLPLPSNDYCSLR 200
           STV C  C + S TFE F  +SLPL S   C+L+
Sbjct: 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQ 251
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
2gfo_A 396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 6e-64
3nhe_A 348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 2e-61
2y6e_A 367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 3e-58
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 7e-54
3i3t_A 355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 6e-51
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-48
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-41
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-32
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 3e-30
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 4e-27
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
 Score =  201 bits (513), Expect = 6e-64
 Identities = 86/217 (39%), Positives = 113/217 (52%), Gaps = 31/217 (14%)

Query: 8   SYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK- 65
              +  +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF    ++  +  +    
Sbjct: 48  IRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLG 107

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHE 125
             G++AEEF +I   LW G  RY SP+ FK            +GK+   F GY QQDS E
Sbjct: 108 HKGEVAEEFGIIMKALWTGQYRYISPKDFK----------ITIGKINDQFAGYSQQDSQE 157

Query: 126 FLTILIDTLHEDLK-------------------ESGEKSWGEFRKKNKSIISELFYGQLK 166
            L  L+D LHEDL                    ++ E +W + ++ N+SII  LF GQ K
Sbjct: 158 LLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217

Query: 167 STVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF 203
           STV C  C + S TFE F  +SLPL S   C+L+   
Sbjct: 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCL 254
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
2gfo_A 396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
2y6e_A 367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A 348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A 355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A 374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.78
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 92.41
3mp2_A211 Non-structural protein 3; papain-like protease, TG 86.89
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
Probab=100.00  E-value=8.4e-40  Score=268.24  Aligned_cols=183  Identities=47%  Similarity=0.859  Sum_probs=155.0

Q ss_pred             ccccccccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hcccccc-CCCCchHHHHHHHHHHHHHhcCCCC
Q psy10711         10 RIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSR   87 (203)
Q Consensus        10 ~~~p~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~   87 (203)
                      .+.|.+...+++++||.|+||||||||+||+|+++|+|+++++... ...+... ......+++.++..++..||.+...
T Consensus        50 ~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~  129 (396)
T 2gfo_A           50 NLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYR  129 (396)
T ss_dssp             GGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEE
T ss_pred             ccCCccCCCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCc
Confidence            3456776678899999999999999999999999999999998864 2222211 1123457899999999999999888


Q ss_pred             cccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------hhHHhHHH
Q psy10711         88 YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------SGEKSWGE  148 (203)
Q Consensus        88 ~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------~~~~~~~~  148 (203)
                      .++|..|          +.+++...+.|.+++|||||||+.+|||.|++++..                   .+...|..
T Consensus       130 ~i~P~~f----------~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~  199 (396)
T 2gfo_A          130 YISPKDF----------KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK  199 (396)
T ss_dssp             EECCHHH----------HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHH
T ss_pred             eECHHHH----------HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHH
Confidence            9999999          999999999999999999999999999999999742                   23345666


Q ss_pred             HhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCCeeeEEEe
Q psy10711        149 FRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVS  202 (203)
Q Consensus       149 ~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~L~~~  202 (203)
                      ......++|.++|+|.+.+.++|..|++++.+.|+|++|+|+||.....+|+.|
T Consensus       200 ~~~~~~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~  253 (396)
T 2gfo_A          200 HKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDC  253 (396)
T ss_dssp             HHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHH
T ss_pred             hhhccCCccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHH
Confidence            666778999999999999999999999999999999999999999877777654
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d2gfoa1 348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-34
d2ayna1 383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 2e-31
d2hd5a1 336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 3e-28
d1vjva_ 397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-24
d1nbfa_ 347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-22
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-34
 Identities = 86/214 (40%), Positives = 111/214 (51%), Gaps = 31/214 (14%)

Query: 11  IKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMT--AAYSKTSG 68
           +  +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF     +     +      G
Sbjct: 4   LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKG 63

Query: 69  KLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLT 128
           ++AEEF +I   LW G  RY SP+ FK+            GK+   F GY QQDS E L 
Sbjct: 64  EVAEEFGIIMKALWTGQYRYISPKDFKITI----------GKINDQFAGYSQQDSQELLL 113

Query: 129 ILIDTLHEDLKESG-------------------EKSWGEFRKKNKSIISELFYGQLKSTV 169
            L+D LHEDL ++                    E +W + ++ N+SII  LF GQ KSTV
Sbjct: 114 FLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTV 173

Query: 170 ICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF 203
            C  C + S TFE F  +SLPL S   C+L+   
Sbjct: 174 QCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCL 207
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d2gfoa1 348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1nbfa_ 347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1 383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 99.97
d2hd5a1 336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 99.96
d1vjva_ 397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 99.94
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 91.25
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=224.21  Aligned_cols=182  Identities=47%  Similarity=0.861  Sum_probs=154.3

Q ss_pred             ccccccccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hccccc-cCCCCchHHHHHHHHHHHHHhcCCCC
Q psy10711         10 RIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTA-AYSKTSGKLAEEFQLIFNMLWAGDSR   87 (203)
Q Consensus        10 ~~~p~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~   87 (203)
                      .+.|.+++++||++||.|+||||||||+||+|+++|+|++++.+.. ...... .......+++.+++.++..|+.+...
T Consensus         3 ~~~~~~~~~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~   82 (348)
T d2gfoa1           3 NLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYR   82 (348)
T ss_dssp             GGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEE
T ss_pred             CCCCccCCCCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            4679999999999999999999999999999999999999998655 222211 11344468999999999999999989


Q ss_pred             cccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------hhHHhHHH
Q psy10711         88 YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------SGEKSWGE  148 (203)
Q Consensus        88 ~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------~~~~~~~~  148 (203)
                      .++|..+          ...+++..+.+.++.||||+||+..+++.|++++..                   .....+..
T Consensus        83 ~i~~~~~----------~~~~~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (348)
T d2gfoa1          83 YISPKDF----------KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK  152 (348)
T ss_dssp             EECCHHH----------HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHH
T ss_pred             ccccccc----------cccccccCccccCcccCCHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhh
Confidence            9999999          999999999999999999999999999999999742                   22334445


Q ss_pred             HhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCCeeeEEE
Q psy10711        149 FRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRV  201 (203)
Q Consensus       149 ~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~L~~  201 (203)
                      ......+++..+|.|.+.+...|..|+..+...++|..++++++.....+++.
T Consensus       153 ~~~~~~s~i~~~f~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~  205 (348)
T d2gfoa1         153 HKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQD  205 (348)
T ss_dssp             HHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHH
T ss_pred             ccccCCchhHhhhhhhhheeccccCCCceeeccccceeechhhcccccCcHHH
Confidence            55567788999999999999999999999999999999999998887666543
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure