Psyllid ID: psy10729
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | 2.2.26 [Sep-21-2011] | |||||||
| P52295 | 522 | Importin subunit alpha OS | yes | N/A | 0.997 | 0.693 | 0.446 | 4e-91 | |
| P52170 | 522 | Importin subunit alpha-1 | N/A | N/A | 0.942 | 0.655 | 0.438 | 2e-88 | |
| O35343 | 521 | Importin subunit alpha-4 | yes | N/A | 0.991 | 0.690 | 0.422 | 5e-88 | |
| O00505 | 521 | Importin subunit alpha-3 | yes | N/A | 1.0 | 0.696 | 0.413 | 6e-88 | |
| O35344 | 521 | Importin subunit alpha-3 | no | N/A | 1.0 | 0.696 | 0.413 | 7e-88 | |
| O00629 | 521 | Importin subunit alpha-4 | no | N/A | 0.988 | 0.689 | 0.416 | 2e-87 | |
| P52171 | 523 | Importin subunit alpha-2 | N/A | N/A | 0.911 | 0.632 | 0.447 | 3e-87 | |
| Q96321 | 532 | Importin subunit alpha-1 | yes | N/A | 0.994 | 0.678 | 0.412 | 2e-83 | |
| P52292 | 529 | Importin subunit alpha-2 | no | N/A | 0.964 | 0.661 | 0.417 | 1e-81 | |
| Q9SLX0 | 534 | Importin subunit alpha-1b | yes | N/A | 0.972 | 0.661 | 0.399 | 1e-81 |
| >sp|P52295|IMA_DROME Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 335 bits (859), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 195/437 (44%), Positives = 254/437 (58%), Gaps = 75/437 (17%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
+ + +SARKMLS+ER+PPID +I G+VPIC+ L + N + QFEA WALTNIASGTS
Sbjct: 86 QFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTS 145
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
+QT VI NA+P F+ LL S +NLAEQA WALGNIAGDGA ARD+++ + IL L
Sbjct: 146 DQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVIDGILPL 205
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
+ TP +FLRNIVW +SNLCRNKNP+P F+++K LP+L+QL+ + D++ L+D CWALS
Sbjct: 206 INNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADACWALS 265
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD------- 233
Y++D N KIQAVVD+ VPRLV+LL +E +I+ ALR+VGNI TG D QTD
Sbjct: 266 YVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALRSVGNIVTGTDQQTDVVIASGG 325
Query: 234 -----------------------------------CVIQAGGLQKMKKLLSSSRVNIVKE 258
VIQAG Q+++ +L KE
Sbjct: 326 LPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKE 385
Query: 259 AAWTISNIT-AGNSRQID------------------------HVIQEGLDNLLEIALQVG 293
AAW ++N T +G QI V+Q GL NL +A ++G
Sbjct: 386 AAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLG 445
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF---NDSAENSI---ENGDT 347
+ L+VEE GGL+KLE LQ HENE VY+K Y II F +D AE + E
Sbjct: 446 GTENLCLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQEVNGA 505
Query: 348 IEFNP-QPVNTVNGFNF 363
+EFN QP G+ F
Sbjct: 506 LEFNATQPKAPEGGYTF 522
|
It is required for normal cell proliferation and may serve as an adapter molecule to form complexes with other proteins. May act as a tumor suppressor in hematopoietic cells. May play a role in the nuclear import of karyophilic proteins and some of these may be required for the normal transmission and function of proliferative signals in the cells. Drosophila melanogaster (taxid: 7227) |
| >sp|P52170|IMA1_XENLA Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 182/415 (43%), Positives = 241/415 (58%), Gaps = 73/415 (17%)
Query: 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTM 64
T++ARKMLS+ER+PP++++IEAG++P VE L +N QFEA WALTNIASGTS+QT
Sbjct: 94 TQAARKMLSRERNPPLNDIIEAGLIPKLVEFLSRHDNSTLQFEAAWALTNIASGTSDQTK 153
Query: 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
+V++ AIP F+ L+SSPHL+++EQA WALGNIAGDG RD L+ +P +LALV P
Sbjct: 154 SVVDGGAIPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALINCNVIPPLLALVNPQ 213
Query: 125 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
TP +LRNI W +SNLCRNKNP P + LP+L QL+H D + LSD CWA+SY++D
Sbjct: 214 TPLGYLRNITWMLSNLCRNKNPYPPMSAVLQILPVLTQLMHHDDKDILSDTCWAMSYLTD 273
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
G ND+I VV TG+V RL++L+ S E +I+T +LRTVGNI TG D QT I AG L +
Sbjct: 274 GSNDRIDVVVKTGIVDRLIQLMYSPELSIVTPSLRTVGNIVTGTDKQTQAAIDAGVLSVL 333
Query: 245 KKLLSSSRVNIVKEAA------------------------------------------WT 262
+LL + +I KEAA W
Sbjct: 334 PQLLRHQKPSIQKEAAWAISNIAAGPAPQIQQMITCGLLSPLVDLLNKGDFKAQKEAVWA 393
Query: 263 ISNITAGNS-RQIDHVIQ----EGLDNLLEI-------------------ALQVGELNQM 298
++N T+G + Q+ ++Q E L NLL I A ++GE ++
Sbjct: 394 VTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEKL 453
Query: 299 ALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQ 353
LLVEE GGLEK+EALQ H+N VY +I F S E D I P+
Sbjct: 454 CLLVEELGGLEKIEALQTHDNHMVYHAALALIEKYF------SGEEADDIALEPE 502
|
Essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope. Xenopus laevis (taxid: 8355) |
| >sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 185/438 (42%), Positives = 257/438 (58%), Gaps = 78/438 (17%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI GDG + RD ++ LG + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV---- 235
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 236 --------------------------IQAGGLQKMKKLLSSSRVNIV------------K 257
I AG Q+++ ++ ++ V ++ K
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQK 386
Query: 258 EAAWTISNIT-AGNSRQIDHVIQE-----------------------GLDNLLEIALQVG 293
EAAW ISN+T +G Q+ ++IQ+ GL N+L++A
Sbjct: 387 EAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDQA 446
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF--NDSAEN------SIENG 345
E +A L+EE GGLEK+E LQ+HENE +Y+ Y+II F +D E+ S++ G
Sbjct: 447 E--TIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLVPESVQGG 504
Query: 346 DTIEFNPQPVNTVNGFNF 363
T FN GF F
Sbjct: 505 -TFGFNSSTNVPTEGFQF 521
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mus musculus (taxid: 10090) |
| >sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/435 (41%), Positives = 254/435 (58%), Gaps = 72/435 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 VQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S QT V+ +NA+P FL+LL SPH N+ EQA WALGNI GDG + RD ++ LG + +L+
Sbjct: 147 SAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W I NLCRNK+P P E ++ LP L LI+ TD+ L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV---- 235
SY++DG N++IQ V+D+GVVP LV LL +E + TAALR VGNI TG D QT V
Sbjct: 267 SYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 236 --------------------------IQAGGLQKMKKLLSSSRVNIV------------K 257
I AG Q+++ ++ + + ++ K
Sbjct: 327 VLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQK 386
Query: 258 EAAWTISNIT-AGNSRQIDHVIQEG--------------------LDNLLEIALQVG-EL 295
EAAW ISN+T +G Q+++++Q+ LD L I + G E
Sbjct: 387 EAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEA 446
Query: 296 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF--NDSAENSI-----ENGDTI 348
+ +A ++EE GGLEK+E LQ HENE +Y+ ++II F +D E+ G T
Sbjct: 447 STIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTY 506
Query: 349 EFNPQPVNTVNGFNF 363
F+P FNF
Sbjct: 507 NFDPTANLQTKEFNF 521
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Recognizes NLSs of influenza A virus nucleoprotein probably through ARM repeats 7-9. Homo sapiens (taxid: 9606) |
| >sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 180/435 (41%), Positives = 254/435 (58%), Gaps = 72/435 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 VQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S QT V+ +NA+P FL+LL SPH N+ EQA WALGNI GDG + RD ++ LG + +L+
Sbjct: 147 SAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W I NLCRNK+P P E ++ LP L LI+ TD+ L D WAL
Sbjct: 207 FINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV---- 235
SY++DG N++IQ V+D+GVVP LV LL +E + TAALR VGNI TG D QT V
Sbjct: 267 SYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 236 --------------------------IQAGGLQKMKKLLSSSRVNIV------------K 257
I AG Q+++ ++ + + ++ K
Sbjct: 327 VLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQK 386
Query: 258 EAAWTISNIT-AGNSRQIDHVIQEG--------------------LDNLLEIALQVG-EL 295
EAAW ISN+T +G Q+++++Q+ LD L I + G E
Sbjct: 387 EAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEA 446
Query: 296 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF--NDSAEN-----SIENGDTI 348
+ +A ++EE GGLEK+E LQ HENE +Y+ ++II F +D E+ G T
Sbjct: 447 STIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPSLIPEATQGGTY 506
Query: 349 EFNPQPVNTVNGFNF 363
F+P FNF
Sbjct: 507 NFDPTANLQTKEFNF 521
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Mus musculus (taxid: 10090) |
| >sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/439 (41%), Positives = 255/439 (58%), Gaps = 80/439 (18%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI GDG + RD ++ LG + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV---- 235
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 236 --------------------------IQAGGLQKMKKLLSSSRVNIV------------K 257
I AG Q+++ ++ ++ V ++ K
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQK 386
Query: 258 EAAWTISNIT-AGNSRQIDHVIQE-----------------------GLDNLLEIALQVG 293
EAAW ISN+T +G Q+ ++IQ+ GL N+L++A
Sbjct: 387 EAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMA--ED 444
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIEN--------- 344
E + L+EE GGLEK+E LQ+HENE +Y+ Y+II F S+++ E+
Sbjct: 445 EAETIGNLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFF--SSDDIDEDPSLVPEAIQ 502
Query: 345 GDTIEFNPQPVNTVNGFNF 363
G T FN GF F
Sbjct: 503 GGTFGFNSSANVPTEGFQF 521
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a nonclassical NLS. Homo sapiens (taxid: 9606) |
| >sp|P52171|IMA2_XENLA Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/398 (44%), Positives = 236/398 (59%), Gaps = 67/398 (16%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTSEQT 63
+T++ARKMLSKER+PP++++IEAG++P VE L N +T QFEA WALTNIASGTS+QT
Sbjct: 93 STQAARKMLSKERNPPLNDIIEAGLIPKLVEFLSYHNNSTLQFEAAWALTNIASGTSDQT 152
Query: 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 123
+V++ AIP F+ L+SSPHL+++EQA WALGNIAGDG RD L+ +P +L LV P
Sbjct: 153 KSVVDGGAIPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALISCNVIPPLLTLVNP 212
Query: 124 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183
TP +LRNI W +SNLCRNKNP P + LP+L QL+ D + LSD CWA+SY++
Sbjct: 213 QTPLGYLRNITWTLSNLCRNKNPYPPMSAVLQILPVLTQLMLHEDKDILSDTCWAMSYLT 272
Query: 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243
DG ND+I VV TG+V RL++L+ S E +ILT +LRTVGNI TG D QT I AG L
Sbjct: 273 DGSNDRIDVVVKTGLVERLIQLMYSPELSILTPSLRTVGNIVTGTDKQTQAAIDAGVLSV 332
Query: 244 MKKLLSSSRVNIVKEAAWT----------------------------------------- 262
+ +LL + +I KEAAW
Sbjct: 333 LPQLLRHQKPSIQKEAAWALSNIAAGPAPQIQQMITCGLLSPLVDLLKKGDFKAQKEAVW 392
Query: 263 -ISNITAGNS-RQIDHVIQ----EGLDNLLEI-------------------ALQVGELNQ 297
++N T+G + Q+ ++Q E L NLL I A ++GE +
Sbjct: 393 AVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK 452
Query: 298 MALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 335
+ LLVEE GGLEK+EALQ H+N VY +I F+
Sbjct: 453 LCLLVEELGGLEKIEALQTHDNRMVYHAALALIEKYFS 490
|
It is essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope. Xenopus laevis (taxid: 8355) |
| >sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 184/446 (41%), Positives = 250/446 (56%), Gaps = 85/446 (19%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGT 59
+++ +T RK+LS ER PPI+E+I AGVVP VE L E+ P QFEA WALTNIASGT
Sbjct: 88 LQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGT 147
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S+ T VI+ NA+P F+QLL+SP ++ EQA WALGN+AGD R RDL+LG G + +L
Sbjct: 148 SDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLN 207
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ + + LRN W +SN CR K P P F+++K LP L +LIH+ D E L+D CWAL
Sbjct: 208 QLNEHAKLSMLRNATWTLSNFCRGK-PQPHFDQVKPALPALERLIHSDDEEVLTDACWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY+SDG NDKIQ V+ GVVP+LVELL ++L ALRTVGNI TG+D QT CVI +G
Sbjct: 267 SYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSG 326
Query: 240 GL--------QKMKK-----------------------------------LLSSSRVNIV 256
L Q KK LL ++ +I
Sbjct: 327 ALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIK 386
Query: 257 KEAAWTISNITAGNSR-QIDHVIQ-----------------------EGLDNLLEIAL-- 290
KEAAW ISN T+G S QI ++++ EGL+N+L++
Sbjct: 387 KEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAE 446
Query: 291 ----QVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE--- 343
G++N A L++++ GLEK+E LQ H+N +Y+K KI+ + + ++ +
Sbjct: 447 KNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPP 506
Query: 344 --NGDTIEF----NPQPVNTVNGFNF 363
+G F N PV + GFNF
Sbjct: 507 GVDGSQAGFQFGGNQAPVPS-GGFNF 531
|
Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium. Arabidopsis thaliana (taxid: 3702) |
| >sp|P52292|IMA2_HUMAN Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/431 (41%), Positives = 239/431 (55%), Gaps = 81/431 (18%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQ 62
AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQ
Sbjct: 96 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSP-IQFESAWALTNIASGTSEQ 154
Query: 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122
T V++ AIP F+ LL+SPH +++EQA WALGNIAGDG+ RDL++ G + +LAL+
Sbjct: 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA 214
Query: 123 -PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178
P+ + +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA
Sbjct: 215 VPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWA 274
Query: 179 LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238
+SY++DG N++I VV TGVVP+LV+LL + E I+T ALR +GNI TG D QT VI A
Sbjct: 275 ISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDA 334
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV------ 292
G L LL++ + NI KEA WT+SNITAG QI V+ GL L L
Sbjct: 335 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQ 394
Query: 293 -------------GELNQMALLV----------------------------------EES 305
G + Q+ LV E+
Sbjct: 395 KEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKL 454
Query: 306 GGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNP 352
G EKL EALQ+HENE+VY+ +I F+ E + N
Sbjct: 455 GETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEE--------DQNV 506
Query: 353 QPVNTVNGFNF 363
P T G+ F
Sbjct: 507 VPETTSEGYTF 517
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Homo sapiens (taxid: 9606) |
| >sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/436 (39%), Positives = 246/436 (56%), Gaps = 83/436 (19%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGT 59
+++ AT RK+LS ER PPI+E+I GVVP + L E+ P QFEA WALTNIASGT
Sbjct: 94 VQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGT 153
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S+ T V+ + A+P F++LLSSP ++ EQA WALGN+AGD + RDL+L G + +L
Sbjct: 154 SDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQ 213
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ + + LRN W +SN CR K P P+FE++K L L +LIH+ D E L+D CWAL
Sbjct: 214 QLNEHAKLSMLRNATWTLSNFCRGK-PQPNFEQVKPALSALQRLIHSQDEEVLTDACWAL 272
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY+SDG NDKIQAV+++GV PRLVELL ++L ALRTVGNI TG+D QT CVI
Sbjct: 273 SYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQ 332
Query: 240 GL------------QKMKK-------------------------------LLSSSRVNIV 256
L + +KK LL ++ +I
Sbjct: 333 ALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIK 392
Query: 257 KEAAWTISNITAGNSR-QIDHVIQ-----------------------EGLDNLLEIA--- 289
KEAAW ISN T+G + QI +++ EGL+N+L++
Sbjct: 393 KEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 452
Query: 290 --LQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDT 347
L G++N A +++++ GLEK+E LQ H+N +Y+K K++ + + ++++ +GD
Sbjct: 453 KNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGD- 511
Query: 348 IEFNPQPVNTVNGFNF 363
N NGFNF
Sbjct: 512 --------NAQNGFNF 519
|
Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | ||||||
| 322796155 | 425 | hypothetical protein SINV_05723 [Solenop | 0.922 | 0.788 | 0.560 | 1e-107 | |
| 345488160 | 520 | PREDICTED: importin subunit alpha-2-like | 0.988 | 0.690 | 0.484 | 1e-103 | |
| 307199037 | 517 | Importin subunit alpha-2 [Harpegnathos s | 0.997 | 0.700 | 0.456 | 1e-100 | |
| 350396236 | 519 | PREDICTED: importin subunit alpha-2-like | 0.994 | 0.695 | 0.475 | 1e-100 | |
| 91077394 | 516 | PREDICTED: similar to importin alpha 1a | 0.961 | 0.676 | 0.469 | 3e-99 | |
| 340722259 | 519 | PREDICTED: importin subunit alpha-2-like | 0.994 | 0.695 | 0.464 | 1e-98 | |
| 195116553 | 522 | GI17589 [Drosophila mojavensis] gi|19391 | 0.997 | 0.693 | 0.462 | 3e-98 | |
| 383858926 | 518 | PREDICTED: importin subunit alpha-2-like | 0.925 | 0.648 | 0.503 | 1e-97 | |
| 332024026 | 477 | Importin subunit alpha-2 [Acromyrmex ech | 0.922 | 0.702 | 0.475 | 2e-97 | |
| 380029460 | 520 | PREDICTED: importin subunit alpha-2-like | 0.997 | 0.696 | 0.486 | 3e-97 |
| >gi|322796155|gb|EFZ18731.1| hypothetical protein SINV_05723 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/337 (56%), Positives = 252/337 (74%), Gaps = 2/337 (0%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ RK+LS+ER PPI+++IE G+VP+C++ LD D+N + QFE TW LTNIASGT
Sbjct: 87 LQLTAIQTCRKLLSRERDPPINDMIEGGIVPLCIKFLDNDDNISLQFEVTWVLTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S QT V+ A+PK ++LL S +AEQA WALGNIAGDG ARDL+LG +P+++
Sbjct: 147 SVQTQNVVKHGAVPKLVKLLQSASPMVAEQAVWALGNIAGDGPYARDLVLGHDALPRLVD 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+TP TF RNIVW +SNLCRNKNP+P FE I+ LP+ N+L+ TD + L+D CWAL
Sbjct: 207 LIKPDTPMTFTRNIVWTLSNLCRNKNPSPSFELIRPLLPVFNRLLSYTDRDVLADTCWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQAV++TG++P+LVELL S E ILT ALR VGNI TGND QTD VI AG
Sbjct: 267 SYLTDGTNDKIQAVLETGIIPKLVELLASREGAILTPALRAVGNIVTGNDAQTDAVISAG 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLDNLLEIALQVGELNQM 298
GL LL R NIVKEAAW +SNITA I V+ +GL N+L A +VG+++++
Sbjct: 327 GLSHFGALLRYPRANIVKEAAWAVSNITAESKDWNIILVVLDGLTNILHAAEKVGQVDKL 386
Query: 299 ALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 335
A+++E+ GGL+K+EALQ+HENE VYQ+ II F+
Sbjct: 387 AIMIEQVGGLDKIEALQNHENEEVYQRSMAIIDAFFS 423
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345488160|ref|XP_001605009.2| PREDICTED: importin subunit alpha-2-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/431 (48%), Positives = 259/431 (60%), Gaps = 72/431 (16%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQT 63
AT++ RKMLS+ER+PPI+++IE G+VP+CVE L NP QFEA WALTN+ASGTSEQT
Sbjct: 90 ATQACRKMLSRERNPPINDMIEKGIVPLCVEFLGYHHNPMLQFEACWALTNVASGTSEQT 149
Query: 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 123
V+ AIPK ++LL P +N+AEQA WALGNIAGDG ARDL+L G++ ++AL+ P
Sbjct: 150 QVVVKYGAIPKLVELLKCPAINVAEQAVWALGNIAGDGPAARDLVLKEGSLSLLIALITP 209
Query: 124 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183
T +F+RNIVW +SNLCRNKNP P FE +K LPLLN+L+ D + L D CWALSY++
Sbjct: 210 ETSLSFVRNIVWTVSNLCRNKNPPPPFEIVKDALPLLNRLLSYPDKDVLGDACWALSYLT 269
Query: 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243
DG N++IQ V+D+GVVP+LVELL S E T+LT ALR VGNI TGND QTD +I AG L
Sbjct: 270 DGTNERIQTVLDSGVVPKLVELLGSSEVTVLTPALRAVGNIVTGNDLQTDTIISAGALNY 329
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELN------- 296
+ LL+ RVN+VKEAAWTISNITAGN +QI +I GL LL L +G+
Sbjct: 330 LGALLTHKRVNLVKEAAWTISNITAGNDQQIQRIIDAGLLPLLIQVLHMGDFKSQKEAAW 389
Query: 297 ------------QMALLV------------------------------------------ 302
Q+ALLV
Sbjct: 390 AITNLTSGGTVPQLALLVQLGVLTPFCNLLESKDWKCVLVVLDGLNNILNAAEKMGEVDR 449
Query: 303 -----EESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN----SIENGD-TIEFNP 352
EE GGL+KLEALQ HENE VYQK +I F+D + N D +EF
Sbjct: 450 VALVIEEIGGLDKLEALQTHENENVYQKAVHMIDTFFSDGEADPNLAPTTNMDGQLEFQA 509
Query: 353 QPVNTVNGFNF 363
GF F
Sbjct: 510 TTTAPQGGFQF 520
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307199037|gb|EFN79761.1| Importin subunit alpha-2 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/434 (45%), Positives = 268/434 (61%), Gaps = 72/434 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ AT++ RK+LS+E+HPPI+ +I G+VP CVELLD + N QFEA WALTN+ASGT
Sbjct: 85 VQLQATQTCRKLLSREKHPPIETMINCGIVPRCVELLDCNHNVALQFEAAWALTNVASGT 144
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+EQT VI A+P+ + LL SP ++AEQA WALGNIAGDG RDL+LG MP +L
Sbjct: 145 TEQTQVVIKYGAVPRLVMLLKSPSPSVAEQAVWALGNIAGDGPSTRDLILGHDAMPLLLD 204
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+T +F+RNIVW +SNLCRNKNP P FE ++ LP LN+L+ +TD + L+D CWAL
Sbjct: 205 LIKPDTSVSFMRNIVWTLSNLCRNKNPPPPFEIVQTALPALNRLLTSTDKDILADACWAL 264
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQ V+D+G+V +LVELL S+E T+LT ALRTVGNI TG+D QTD +I AG
Sbjct: 265 SYLTDGSNDKIQVVLDSGIVSKLVELLSSQEGTVLTPALRTVGNIVTGDDAQTDSIIIAG 324
Query: 240 GLQKMKKLLSSSRVNIVKEAAWT------------------------------------- 262
GL + LL R NIVKEAAW
Sbjct: 325 GLTHLGNLLCHPRKNIVKEAAWAISNITAGNTEQIQHVISAGILTPLVQVLKSGDFKAQK 384
Query: 263 -----ISNITAGNS-RQIDHVIQ-----------------------EGLDNLLEIALQVG 293
++N+T+G S +Q+ ++Q +GL+N+L A ++G
Sbjct: 385 EAAWAVTNLTSGGSIQQLADLVQAGVLPPLCDLLVTKDWDTIIVILDGLNNILHAAEKLG 444
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS----IENGDTIE 349
++ Q+A++VEE+GGL+KLEALQHHENE +YQK +I F+ E N +E
Sbjct: 445 QVEQIAIIVEEAGGLDKLEALQHHENERIYQKSMTMIDTFFSGDGEQEELAPAANDGQLE 504
Query: 350 FNPQPVNTVNGFNF 363
F +T F F
Sbjct: 505 FKASE-DTSTNFKF 517
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350396236|ref|XP_003484488.1| PREDICTED: importin subunit alpha-2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/437 (47%), Positives = 274/437 (62%), Gaps = 76/437 (17%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+R+ AT++ RKMLS+E+ PPID +I+ G+VP+CVE LD N QFEA WALTN+ASGT
Sbjct: 85 IRLQATQTCRKMLSREKSPPIDNMIQRGIVPLCVEFLDYHHNTALQFEAAWALTNVASGT 144
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT+ V+ AIPK + LL S N+AEQA WALGNIAGDGA ARDL+LG MP +L
Sbjct: 145 SEQTLVVVKHGAIPKLVALLKSGSPNVAEQAVWALGNIAGDGAMARDLVLGTDAMPLLLE 204
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+T TF RNIVW +SNLCRNKNP P F+ ++ LP+LN+L+ +D + L+D CWAL
Sbjct: 205 LIKPDTSITFTRNIVWTLSNLCRNKNPPPPFDVVRTALPVLNRLLSNSDKDILADACWAL 264
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQAVVD GV+P+LV+LL S E T+LT ALR+VGNI TGND QTD +IQAG
Sbjct: 265 SYLTDGPNDKIQAVVDCGVIPKLVQLLGSTEVTVLTPALRSVGNIVTGNDAQTDAIIQAG 324
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTI------------------------------------ 263
GLQ + LL R+NIVKEAAWTI
Sbjct: 325 GLQYLGLLLQHHRLNIVKEAAWTISNITAGNMEQIQEVINAALLPPLIHVLECGDFKSQK 384
Query: 264 ------SNITAGNS-RQIDHVIQ-----------------------EGLDNLLEIALQVG 293
+N+T+G S +Q+ ++Q +GL N+ A ++G
Sbjct: 385 EAAWAVTNLTSGGSVQQLAQLVQLGVLGPFCNLLEAKDWKTIIVVLDGLSNICSAAEKMG 444
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS-------AENSIENGD 346
E++++A+++EE GGL+KLEALQHHE E VYQK +I F++ A +I +G
Sbjct: 445 EVDRVAIMIEEVGGLDKLEALQHHEVEQVYQKATAMIDTFFSEPEAQESTLATPTIADGQ 504
Query: 347 TIEFNPQPVNTVNGFNF 363
+EF +GFNF
Sbjct: 505 -LEFKTTETAQ-SGFNF 519
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91077394|ref|XP_975293.1| PREDICTED: similar to importin alpha 1a [Tribolium castaneum] gi|270001645|gb|EEZ98092.1| hypothetical protein TcasGA2_TC000505 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 197/420 (46%), Positives = 261/420 (62%), Gaps = 71/420 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGT 59
++ AT++ RKMLS+ER+PPID +I GVVP CVE L NP+ FEA WALTNIASGT
Sbjct: 83 LQFKATQACRKMLSRERNPPIDHMIRLGVVPRCVEFLGKTHNPSLVFEACWALTNIASGT 142
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V+ A+PK QLLSS +++ EQA WA+GNIAGDG +RDL+L G +P ++
Sbjct: 143 SEQTAAVVQEGALPKLQQLLSSNRIDVVEQAIWAIGNIAGDGPESRDLVLNYGVLPSLIN 202
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++PNT + LRN VW ISNLCRNKNP PDFE +K LP+L +L+ D + L+D CWAL
Sbjct: 203 LIKPNTTLSLLRNTVWVISNLCRNKNPYPDFELVKPALPVLARLLSHDDKDVLADTCWAL 262
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG N+KIQAV+DTG++ RLV LL SEE+T+LT ALR VGNI TGNDHQTD VI AG
Sbjct: 263 SYLTDGSNEKIQAVLDTGLIDRLVMLLYSEESTVLTPALRAVGNIVTGNDHQTDMVINAG 322
Query: 240 GLQKMKKLLSSSRVNIVKEAAWT------------------------------------- 262
L M +LL SR+NIVKEAAWT
Sbjct: 323 ALDCMIRLLQHSRLNIVKEAAWTVSNITAGNSEQIQKVLDAGILPYLLHVLQTGDFKSQK 382
Query: 263 -----ISNITAG-NSRQIDHVIQ-----------------------EGLDNLLEIALQVG 293
++N T+G NS Q+ +++ EGL+N+L A ++
Sbjct: 383 EAAWAVTNFTSGGNSAQLAQLVEMGALKPMCNLLNSKDSKTIIVVLEGLNNILSAAAKLN 442
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN---SIENGDTIEF 350
+ ++A+++EE GGL+ +EALQ H+NE VY++ II F D E ++ NG+ I+F
Sbjct: 443 QAEKVAIMIEECGGLDGIEALQSHDNEKVYERALHIIENYFADGEEGVTVTVANGE-IQF 501
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722259|ref|XP_003399525.1| PREDICTED: importin subunit alpha-2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 274/437 (62%), Gaps = 76/437 (17%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGT 59
+R+ AT++ RKMLS+E+ PPID +I+ G+VP+CVE LD + N QFEA WALTN+ASGT
Sbjct: 85 IRLQATQTCRKMLSREKSPPIDNMIQRGIVPLCVEFLDYHHNNALQFEAAWALTNVASGT 144
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+EQT+ VI AIPK + LL S N+AEQA WALGNIAGDGA ARDL+LG MP +L
Sbjct: 145 TEQTLAVIKHGAIPKLVALLKSASPNVAEQAVWALGNIAGDGAMARDLVLGTDAMPLLLE 204
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+T TF RNIVW +SNLCRNKNP P F+ ++ LP+LN+L+ +D + L+D CWAL
Sbjct: 205 LIKPDTSITFTRNIVWTLSNLCRNKNPPPPFDVVRTALPVLNRLLSNSDKDILADACWAL 264
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQAV+D GV+P+LV+LL S E T+LT ALR+VGNI TGND QTD +IQAG
Sbjct: 265 SYLTDGPNDKIQAVIDCGVIPKLVQLLGSTEVTVLTPALRSVGNIVTGNDAQTDVIIQAG 324
Query: 240 GLQKMKKLLSSSRVNIVKEAA--------------------------------------- 260
GLQ + LL R+NIVKEAA
Sbjct: 325 GLQYLGLLLQHHRLNIVKEAAWTISNITAGNMEQIQEVINAALLPPLIHVLECGDFKSQK 384
Query: 261 ---WTISNITA-GNSRQIDHVIQ-----------------------EGLDNLLEIALQVG 293
W ++N+T+ G+ +Q+ ++Q +GL N+ A ++G
Sbjct: 385 EAAWAVTNLTSSGSVQQLAQLVQLGVLGPFCNLLEAKDWKTIIVVLDGLSNICSAAEKMG 444
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS-------AENSIENGD 346
E++++A+++EE GGL+KLEALQHHE E VYQK +I F++ A ++ +G
Sbjct: 445 EVDRVAIMIEEVGGLDKLEALQHHEVEQVYQKATAMIDTFFSEPEAQESTLATPAVADGQ 504
Query: 347 TIEFNPQPVNTVNGFNF 363
+EF +GFNF
Sbjct: 505 -LEFKTTET-AQSGFNF 519
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195116553|ref|XP_002002818.1| GI17589 [Drosophila mojavensis] gi|193913393|gb|EDW12260.1| GI17589 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 202/437 (46%), Positives = 258/437 (59%), Gaps = 75/437 (17%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE 61
+ + + ARKMLS+ER+PPID +I G+VPIC+ L NP QFEA WALTNIASGTS+
Sbjct: 86 QFVGMQQARKMLSRERNPPIDVMISHGIVPICIRFLQHNNPLLQFEAAWALTNIASGTSD 145
Query: 62 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121
QT VI NA+P F+ LL S LNLAEQA WALGNIAGDG ARD+++ + IL L+
Sbjct: 146 QTRCVIEQNAVPHFIALLQSKSLNLAEQAVWALGNIAGDGPAARDIVIQHNVIDGILRLI 205
Query: 122 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL-IHTTDVETLSDICWALS 180
TP +FLRNIVW +SNLCRNKNP+P F+++K LP+L+QL ++ D++ L+D CWALS
Sbjct: 206 NNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLVYQEDIQVLADACWALS 265
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y++D N+KIQAVVDT VPRLV+LL ++E +I+ ALR+VGNI TG D QTD VI AGG
Sbjct: 266 YVTDDENNKIQAVVDTNAVPRLVQLLQTDEPSIIVPALRSVGNIVTGTDQQTDVVIAAGG 325
Query: 241 LQKMKKLLSSSRVNIVKEAA---------------------------------------- 260
L K+ LL S+ NIVKEAA
Sbjct: 326 LPKLGMLLQHSKGNIVKEAAWTVSNITAGNQKQIQAVIDAGIFVQIRHVLEKGDFKAQKE 385
Query: 261 --WTISNIT-AGNSRQID------------------------HVIQEGLDNLLEIALQVG 293
W ++N T +G QI V+Q GL NL +A ++G
Sbjct: 386 AAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLLEAKDPRTIKVVQTGLSNLFALAEKLG 445
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF---NDSAENSI---ENGDT 347
+ L+VEE GGL+KLEALQ HENE VY+K Y +I F +D AE + E
Sbjct: 446 GTENLCLMVEELGGLDKLEALQQHENEEVYKKAYALIDTYFSAGDDEAEKELAPQEVNGA 505
Query: 348 IEFNP-QPVNTVNGFNF 363
+EFN QP G+ F
Sbjct: 506 LEFNATQPKAPEGGYTF 522
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858926|ref|XP_003704950.1| PREDICTED: importin subunit alpha-2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 203/403 (50%), Positives = 251/403 (62%), Gaps = 67/403 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ AT++ RKMLS+E++PPID +I+ G+VP CVE LD + NP QFEA WALTN+ASGT
Sbjct: 85 IQLQATQACRKMLSREKNPPIDNMIKQGIVPRCVEFLDYNHNPALQFEAAWALTNVASGT 144
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+EQT V+ AIPK + LL S N+AEQA WALGNIAGDG ARDL+LG TMP +L
Sbjct: 145 TEQTQFVVKHGAIPKLVALLKSASPNVAEQAVWALGNIAGDGPMARDLVLGHDTMPLLLE 204
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+T TF RNIVW +SNLCRNKNP P FE ++ LP+LN+L+ TD + L+D CWAL
Sbjct: 205 LIKPDTSVTFTRNIVWTLSNLCRNKNPPPPFEIVRTALPVLNRLLSNTDKDILADACWAL 264
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQAVVD+G++P+LVELL E T+LT ALR VGNI TGND QTD +I AG
Sbjct: 265 SYLTDGSNDKIQAVVDSGIIPKLVELLALPEVTVLTPALRAVGNIVTGNDSQTDAIIAAG 324
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELN--- 296
GLQ + LL R+NIVKEAAWTISNITAGN QI HVI GL L LQ G+
Sbjct: 325 GLQHLGLLLQHHRINIVKEAAWTISNITAGNMEQIQHVINAGLLPPLIHVLQCGDFKSQK 384
Query: 297 ----------------QMALLV----------------------------------EESG 306
Q+A LV E+ G
Sbjct: 385 EAAWAVTNLTSGGSVQQLAQLVQLGVLAPFCKLLEAKEWKTVLVVLDGLTNILNAAEKMG 444
Query: 307 GLEKL-------------EALQHHENETVYQKCYKIISMAFND 336
+E++ E LQHHE E VYQK +I F+D
Sbjct: 445 EVERVALMIEEVGGIDKLEDLQHHEVEQVYQKAIAMIDTFFSD 487
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332024026|gb|EGI64244.1| Importin subunit alpha-2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 191/402 (47%), Positives = 251/402 (62%), Gaps = 67/402 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ RK+LS+E++PPI+++IE G+VP C+ LLD D N QFE W LTNIASGT
Sbjct: 66 LQLSAIQTCRKLLSREKNPPINDIIEGGIVPRCIALLDNDYNVALQFEVAWVLTNIASGT 125
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S QT VI AIPK + LL S +AEQA WALGNIAGDG ARDL+LG +P +L
Sbjct: 126 SLQTQNVIKYGAIPKLVNLLKSTSPVVAEQAVWALGNIAGDGPYARDLVLGHDALPLLLD 185
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+T TFLRN+VW +SNLCRNKNP P FE I+ LP+ N+L+ TD + L+D CWAL
Sbjct: 186 LIKPDTSITFLRNVVWTLSNLCRNKNPPPPFELIRPVLPIFNRLLSYTDRDVLADTCWAL 245
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQAV++TG++PRLV++L +E ILT ALRTVGNI TG+D QTD VI AG
Sbjct: 246 SYLTDGSNDKIQAVLETGIIPRLVQMLTLQEGMILTPALRTVGNIVTGDDAQTDAVILAG 305
Query: 240 GLQKMKKLLSSSRVNIVKEAAWT------------------------------------- 262
GL + LL RVNIVKEAAW
Sbjct: 306 GLSHLGALLRYHRVNIVKEAAWAISNIMAGNTNQIQNVIDAGLLSPLIEVLQFGDYKSQK 365
Query: 263 -----ISNITAGNSRQ------------------------IDHVIQEGLDNLLEIALQVG 293
I+N+T G + Q I V+ +GL N+L A ++G
Sbjct: 366 EAAWAITNLTTGGTIQHLSQLVGVGVLPPFCNLLESKDWNIVIVVLDGLTNILHAAEKIG 425
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 335
++ ++A+L+EE+GGL+K+EALQHH+NE VYQK II F+
Sbjct: 426 QVEKLAILIEEAGGLDKIEALQHHQNEQVYQKSMAIIDAFFS 467
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029460|ref|XP_003698390.1| PREDICTED: importin subunit alpha-2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 212/436 (48%), Positives = 262/436 (60%), Gaps = 74/436 (16%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ AT++ RKMLS+E++PPID +I+ G+VP CVE LD N QFEA WALTN+ASGT
Sbjct: 86 IQLQATQACRKMLSREKNPPIDIMIQRGIVPRCVEFLDYHHNAALQFEAAWALTNVASGT 145
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V+ AIPK + LL S N+AEQA WALGNIAGDG ARDL+LG MP +L
Sbjct: 146 SEQTHVVVKHGAIPKLVALLKSASPNVAEQAVWALGNIAGDGPAARDLVLGYDAMPLLLE 205
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L++P+T TF RNIVW +SNLCRNKNP P FE ++ LP+LN+L+ D + L+D CWAL
Sbjct: 206 LIKPDTSVTFTRNIVWTLSNLCRNKNPPPPFEIVRTALPVLNRLLSNNDKDILADACWAL 265
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG NDKIQAVV++GV+P+LV+LL S E T+LT ALR VGNI TGND QTD +I AG
Sbjct: 266 SYLTDGSNDKIQAVVESGVIPKLVQLLTSTEVTVLTPALRAVGNIVTGNDMQTDAIISAG 325
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELN--- 296
GLQ + LL R+NIVKEAAWTISNITAGN QI HVI GL LL L+ G+
Sbjct: 326 GLQHLGLLLQHHRINIVKEAAWTISNITAGNIEQIQHVINAGLLPLLIHVLESGDFKSQK 385
Query: 297 ----------------QMALLV----------------------------------EESG 306
Q+A LV E+ G
Sbjct: 386 EAAWAVTNLTSGGSVQQLAQLVQLGVLAPFCNLLEAKDWKTIIVVLDGLTNIFNAAEKMG 445
Query: 307 GLEK-------------LEALQHHENETVYQKCYKIISMAFND-SAENSIENGDT----- 347
+E+ LEALQHH+ E VYQK +I F++ AE S T
Sbjct: 446 EIERVAIMIEEVGGLDKLEALQHHDVEQVYQKATAMIDNFFSEPEAEESTLTTPTAADGQ 505
Query: 348 IEFNPQPVNTVNGFNF 363
+EF P GFNF
Sbjct: 506 LEFKPAET-AQKGFNF 520
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | ||||||
| FB|FBgn0011823 | 522 | Pen "Pendulin" [Drosophila mel | 0.807 | 0.561 | 0.544 | 2.6e-98 | |
| ZFIN|ZDB-GENE-030131-5584 | 531 | kpna4 "karyopherin alpha 4 (im | 0.809 | 0.553 | 0.491 | 1.3e-86 | |
| MGI|MGI:1100848 | 521 | Kpna4 "karyopherin (importin) | 0.809 | 0.564 | 0.488 | 1.3e-86 | |
| RGD|1311483 | 521 | Kpna4 "karyopherin alpha 4 (im | 0.809 | 0.564 | 0.488 | 1.3e-86 | |
| UNIPROTKB|C1JZ67 | 521 | KPNA4 "Importin subunit alpha" | 0.809 | 0.564 | 0.488 | 1.7e-86 | |
| UNIPROTKB|E2RPB3 | 521 | KPNA4 "Importin subunit alpha" | 0.809 | 0.564 | 0.488 | 1.7e-86 | |
| UNIPROTKB|J9PAW2 | 521 | KPNA4 "Importin subunit alpha" | 0.809 | 0.564 | 0.488 | 1.7e-86 | |
| UNIPROTKB|Q5ZLF7 | 521 | KPNA4 "Importin subunit alpha" | 0.809 | 0.564 | 0.488 | 2.1e-86 | |
| ZFIN|ZDB-GENE-040718-22 | 546 | kpna2 "karyopherin alpha 2 (RA | 0.798 | 0.531 | 0.508 | 3.5e-86 | |
| UNIPROTKB|F1NV68 | 486 | KPNA3 "Importin subunit alpha" | 0.776 | 0.580 | 0.505 | 4.4e-86 |
| FB|FBgn0011823 Pen "Pendulin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 160/294 (54%), Positives = 207/294 (70%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
+ + +SARKMLS+ER+PPID +I G+VPIC+ L + N + QFEA WALTNIASGTS
Sbjct: 86 QFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTS 145
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
+QT VI NA+P F+ LL S +NLAEQA WALGNI + IL L
Sbjct: 146 DQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVIDGILPL 205
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
+ TP +FLRNIVW +SNLCRNKNP+P F+++K LP+L+QL+ + D++ L+D CWALS
Sbjct: 206 INNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADACWALS 265
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y++D N KIQAVVD+ VPRLV+LL +E +I+ ALR+VGNI TG D QTD VI +GG
Sbjct: 266 YVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALRSVGNIVTGTDQQTDVVIASGG 325
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L ++ LL ++ NIVKEAAWT+SNITAGN +QI VIQ G+ L L+ G+
Sbjct: 326 LPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGD 379
|
|
| ZFIN|ZDB-GENE-030131-5584 kpna4 "karyopherin alpha 4 (importin alpha 3)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 145/295 (49%), Positives = 194/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V LD D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLDRDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPYLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ + L G+
Sbjct: 327 ALGHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIILLLDKGD 381
|
|
| MGI|MGI:1100848 Kpna4 "karyopherin (importin) alpha 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 144/295 (48%), Positives = 193/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ L G+
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGD 381
|
|
| RGD|1311483 Kpna4 "karyopherin alpha 4 (importin alpha 3)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 144/295 (48%), Positives = 193/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ L G+
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGD 381
|
|
| UNIPROTKB|C1JZ67 KPNA4 "Importin subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 144/295 (48%), Positives = 193/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ L G+
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGD 381
|
|
| UNIPROTKB|E2RPB3 KPNA4 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 144/295 (48%), Positives = 193/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ L G+
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGD 381
|
|
| UNIPROTKB|J9PAW2 KPNA4 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 144/295 (48%), Positives = 193/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ L G+
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGD 381
|
|
| UNIPROTKB|Q5ZLF7 KPNA4 "Importin subunit alpha" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 144/295 (48%), Positives = 193/295 (65%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V L+ D+NP+ QFEA WALTNIASGT
Sbjct: 87 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGT 146
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 147 SEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 206
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W + NLCR+K+P P E I+ LP L LIH TDV L D WAL
Sbjct: 207 FISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++D N++IQ V+D+G+VP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 267 SYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCE 326
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL+ + I KEA W +SNITAGN +Q+ VI L ++ L G+
Sbjct: 327 ALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGD 381
|
|
| ZFIN|ZDB-GENE-040718-22 kpna2 "karyopherin alpha 2 (RAG cohort 1, importin alpha 1)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
Identities = 150/295 (50%), Positives = 197/295 (66%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQT 63
AT++ARK+LS+ERHPPID +I AG++P V L ++P QFEA WALTNIASGTS+QT
Sbjct: 114 ATQAARKLLSRERHPPIDRIISAGLIPKFVGFLSLVDSPPIQFEAAWALTNIASGTSDQT 173
Query: 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ- 122
V+ AIP F+ L+SSPH +++EQA WALGNI +P +LAL+
Sbjct: 174 SAVVQGGAIPAFISLISSPHAHISEQAVWALGNIAGDGSGYRDRVIKHGAIPPLLALLAV 233
Query: 123 PNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
P+ P +LRN+ W +SNLCRNKNPAP E +K LP L L+ +D E L+D CWA+
Sbjct: 234 PDLSVFPAGYLRNVTWTLSNLCRNKNPAPPLEAVKQILPTLICLLQHSDKEVLADTCWAI 293
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG ND+I+ VV+ GVVPRLV+LL S E +I+T +LR++GNI TG D QT V++AG
Sbjct: 294 SYLTDGPNDRIEVVVNAGVVPRLVQLLASGELSIVTPSLRSIGNIVTGTDEQTQAVLEAG 353
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
L LL + NI KEA+WT+SNITAG QI VI G+ L L+ G+
Sbjct: 354 ALPMFPALLRHQKSNIQKEASWTLSNITAGRDYQIQEVINAGIVPYLVEVLRRGD 408
|
|
| UNIPROTKB|F1NV68 KPNA3 "Importin subunit alpha" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 143/283 (50%), Positives = 190/283 (67%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
+++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D+NP+ QFEA WALTNIASGT
Sbjct: 50 IQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGT 109
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
S QT V+ +NA+P FL+LL SPH N+ EQA WALGNI + +L+
Sbjct: 110 SAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS 169
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ P+ P TFLRN+ W I NLCRNK+P P E ++ LP L LI+ TD+ L D WAL
Sbjct: 170 FINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWAL 229
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY++DG N++IQ V+D+GVVP LV LL +E + TAALR VGNI TG D QT V+
Sbjct: 230 SYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCD 289
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL 282
L LL+ + I KEA W +SNITAGN +Q+ VI GL
Sbjct: 290 VLSYFPNLLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGL 332
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P52295 | IMA_DROME | No assigned EC number | 0.4462 | 0.9972 | 0.6934 | yes | N/A |
| O35343 | IMA4_MOUSE | No assigned EC number | 0.4223 | 0.9917 | 0.6909 | yes | N/A |
| O00505 | IMA3_HUMAN | No assigned EC number | 0.4137 | 1.0 | 0.6967 | yes | N/A |
| Q02821 | IMA1_YEAST | No assigned EC number | 0.4105 | 0.9752 | 0.6531 | yes | N/A |
| Q96321 | IMA1_ARATH | No assigned EC number | 0.4125 | 0.9944 | 0.6785 | yes | N/A |
| O94374 | IMA2_SCHPO | No assigned EC number | 0.5123 | 0.7768 | 0.5231 | yes | N/A |
| Q19969 | IMA3_CAEEL | No assigned EC number | 0.3995 | 0.9917 | 0.7003 | yes | N/A |
| Q76P29 | IMAB_DICDI | No assigned EC number | 0.5054 | 0.7520 | 0.5290 | yes | N/A |
| Q9SLX0 | IMA1B_ORYSJ | No assigned EC number | 0.3990 | 0.9724 | 0.6610 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 363 | |||
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 1e-108 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-29 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-28 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-20 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-18 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 1e-09 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 5e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 6e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 3e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 4e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 9e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-06 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 7e-05 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 8e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 0.002 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = e-108
Identities = 154/293 (52%), Positives = 192/293 (65%), Gaps = 2/293 (0%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTSEQT 63
A RK+LSKE PPI +I+AGVVP VE +D+ + QFEA WALTNIASGT++QT
Sbjct: 91 AVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150
Query: 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 123
V++A A+P F+QLLSS ++ EQA WALGNIAGD RD +L G + +L L+
Sbjct: 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210
Query: 124 NTPT-TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182
+ + LRN W +SNLCR KNP PD+ I LP+L +LI++ D E L D CWA+SY+
Sbjct: 211 SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270
Query: 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 242
SDG N+KIQAV+D G+ RLVELL E I T ALR+VGNI TG+D QT +I G L+
Sbjct: 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330
Query: 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL 295
+ LLSS + NI KEA WTISNITAGN+ QI VI L L L E
Sbjct: 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383
|
Length = 526 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-29
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
+ +I+AG +P V LL + N Q EA WAL+N+++G ++ V+ A +P +QLL S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141
+ + A WAL N+A + ++L G +P+++ L+ + +N A+SNL
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119
Query: 142 R 142
Sbjct: 120 S 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-28
Identities = 46/113 (40%), Positives = 69/113 (61%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP L L+ ++D + WALS +S G+ND IQAVV+ G +P LV+LL SE+ ++
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268
AAL + N+A G + V++AGG+ K+ LL SS +I K A +SN+ +
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-20
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 191 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 250
+AV+ G +P LV LL S + + A + N++ GN+ V++AGGL + +LL S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 251 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEK 310
+VK A W + N+ AG L+V E+GG+ K
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDN-------------------------KLIVLEAGGVPK 95
Query: 311 LEALQHHENETVYQKCYKIIS 331
L L NE + + +S
Sbjct: 96 LVNLLDSSNEDIQKNATGALS 116
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-18
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
LS + I ++EAG +P V+LL E+ A WAL N+A+G + + V+ A +
Sbjct: 34 LSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIA 98
PK + LL S + ++ + AT AL N+A
Sbjct: 94 PKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-09
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 59 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98
+ E VI A A+P +QLLSSP + E+A WAL N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 5e-09
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 59 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98
E V++A +P ++LL S + ++A WAL N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 6e-09
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 19 PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 57
+IEAG VP V+LL + Q EA WAL+N+A+
Sbjct: 3 ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268
+ VI+AG + + +LLSS + +EAAW +SN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 17 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 57
+++AG +P VELL E+ EA WAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 4e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
+ QAV++ G VP LV+LL S + + A + N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 9e-07
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268
+D V+ AGGL + +LL S +VKEAAW +SN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
++ QAVVD G +P LVELL SE+ ++ A + N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
++ L+EA LL D +P + A AL + + A+P L+LL
Sbjct: 1 LEALLEA--------LLSDPDPEVRAAAARALGELG-----------DPEALPALLELLK 41
Query: 81 SPHLNLAEQATWALGNIAGDGARARDLLLGL 111
P + A ALG + A LL L
Sbjct: 42 DPDPEVRRAAAEALGKLGDP--EALPALLEL 70
|
This family includes multiple HEAT repeats. Length = 88 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 8e-05
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 97
+ A AL +A G E + +P L LL + E A WALG I
Sbjct: 1 WEVREAAALALGALAGGGPE-LLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 57
++EAG VP V LLD N + Q AT AL+N+AS
Sbjct: 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISD 184
+P L QL+ + D E + WALS ++
Sbjct: 13 AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| KOG0166|consensus | 514 | 100.0 | ||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166|consensus | 514 | 100.0 | ||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| KOG4224|consensus | 550 | 99.97 | ||
| KOG4224|consensus | 550 | 99.96 | ||
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.91 | |
| KOG4199|consensus | 461 | 99.83 | ||
| KOG1048|consensus | 717 | 99.76 | ||
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.75 | |
| KOG2122|consensus | 2195 | 99.7 | ||
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.68 | |
| KOG4199|consensus | 461 | 99.65 | ||
| PRK09687 | 280 | putative lyase; Provisional | 99.63 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.63 | |
| KOG2122|consensus | 2195 | 99.63 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.57 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.57 | |
| KOG1048|consensus | 717 | 99.57 | ||
| KOG0168|consensus | 1051 | 99.56 | ||
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.55 | |
| KOG1222|consensus | 791 | 99.54 | ||
| KOG4500|consensus | 604 | 99.52 | ||
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.46 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.4 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.32 | |
| KOG2160|consensus | 342 | 99.31 | ||
| KOG1517|consensus | 1387 | 99.31 | ||
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.28 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.27 | |
| KOG2160|consensus | 342 | 99.26 | ||
| KOG2171|consensus | 1075 | 99.24 | ||
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.21 | |
| KOG4500|consensus | 604 | 99.21 | ||
| KOG2759|consensus | 442 | 99.18 | ||
| KOG2023|consensus | 885 | 99.18 | ||
| KOG1293|consensus | 678 | 99.18 | ||
| KOG1241|consensus | 859 | 99.17 | ||
| KOG2171|consensus | 1075 | 99.15 | ||
| KOG0168|consensus | 1051 | 99.13 | ||
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.13 | |
| KOG1222|consensus | 791 | 99.1 | ||
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.1 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.1 | |
| KOG2759|consensus | 442 | 99.07 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.06 | |
| KOG3678|consensus | 832 | 98.99 | ||
| KOG1293|consensus | 678 | 98.97 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.96 | |
| KOG1059|consensus | 877 | 98.93 | ||
| KOG2023|consensus | 885 | 98.9 | ||
| KOG0946|consensus | 970 | 98.87 | ||
| KOG1517|consensus | 1387 | 98.85 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.81 | |
| KOG0946|consensus | 970 | 98.81 | ||
| KOG2973|consensus | 353 | 98.74 | ||
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.73 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.72 | |
| KOG3678|consensus | 832 | 98.7 | ||
| KOG4646|consensus | 173 | 98.69 | ||
| KOG1062|consensus | 866 | 98.67 | ||
| KOG1242|consensus | 569 | 98.6 | ||
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.57 | |
| KOG0213|consensus | 1172 | 98.57 | ||
| KOG1241|consensus | 859 | 98.55 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.53 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.49 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.45 | |
| KOG4646|consensus | 173 | 98.42 | ||
| KOG1062|consensus | 866 | 98.4 | ||
| KOG1824|consensus | 1233 | 98.4 | ||
| KOG1061|consensus | 734 | 98.37 | ||
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.37 | |
| KOG1824|consensus | 1233 | 98.3 | ||
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 98.29 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 98.25 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.25 | |
| KOG1789|consensus | 2235 | 98.24 | ||
| KOG0212|consensus | 675 | 98.24 | ||
| KOG2973|consensus | 353 | 98.22 | ||
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.21 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.19 | |
| KOG0213|consensus | 1172 | 98.14 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.13 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.13 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 98.12 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.12 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.11 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.11 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.11 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.08 | |
| KOG1789|consensus | 2235 | 98.07 | ||
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.07 | |
| KOG0212|consensus | 675 | 98.03 | ||
| KOG2259|consensus | 823 | 98.01 | ||
| KOG1242|consensus | 569 | 98.0 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.98 | |
| KOG2734|consensus | 536 | 97.96 | ||
| KOG4413|consensus | 524 | 97.96 | ||
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 97.92 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.91 | |
| KOG1059|consensus | 877 | 97.9 | ||
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.89 | |
| KOG4413|consensus | 524 | 97.88 | ||
| KOG1060|consensus | 968 | 97.87 | ||
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.86 | |
| KOG4151|consensus | 748 | 97.83 | ||
| KOG1240|consensus | 1431 | 97.83 | ||
| KOG2259|consensus | 823 | 97.79 | ||
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.74 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.73 | |
| KOG1061|consensus | 734 | 97.72 | ||
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.69 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.69 | |
| KOG1248|consensus | 1176 | 97.69 | ||
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.68 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 97.66 | |
| KOG1240|consensus | 1431 | 97.66 | ||
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.64 | |
| KOG2062|consensus | 929 | 97.64 | ||
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.63 | |
| KOG0567|consensus | 289 | 97.61 | ||
| KOG1058|consensus | 948 | 97.6 | ||
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 97.6 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.59 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.51 | |
| KOG0915|consensus | 1702 | 97.5 | ||
| KOG1943|consensus | 1133 | 97.5 | ||
| KOG1248|consensus | 1176 | 97.47 | ||
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.46 | |
| KOG1967|consensus | 1030 | 97.46 | ||
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 97.42 | |
| KOG2734|consensus | 536 | 97.42 | ||
| KOG0414|consensus | 1251 | 97.41 | ||
| KOG1077|consensus | 938 | 97.38 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.38 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.35 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.34 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.33 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.32 | |
| KOG2274|consensus | 1005 | 97.3 | ||
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 97.25 | |
| KOG1077|consensus | 938 | 97.14 | ||
| KOG1060|consensus | 968 | 97.13 | ||
| KOG0211|consensus | 759 | 97.09 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.01 | |
| KOG2032|consensus | 533 | 96.99 | ||
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 96.97 | |
| KOG0211|consensus | 759 | 96.95 | ||
| KOG4151|consensus | 748 | 96.95 | ||
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.94 | |
| KOG4653|consensus | 982 | 96.91 | ||
| KOG4535|consensus | 728 | 96.89 | ||
| KOG0915|consensus | 1702 | 96.88 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.87 | |
| KOG3036|consensus | 293 | 96.86 | ||
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.85 | |
| KOG2956|consensus | 516 | 96.84 | ||
| KOG1078|consensus | 865 | 96.83 | ||
| KOG0567|consensus | 289 | 96.8 | ||
| KOG4653|consensus | 982 | 96.8 | ||
| KOG1943|consensus | 1133 | 96.8 | ||
| KOG1078|consensus | 865 | 96.72 | ||
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 96.72 | |
| KOG0414|consensus | 1251 | 96.68 | ||
| KOG3036|consensus | 293 | 96.64 | ||
| KOG1566|consensus | 342 | 96.63 | ||
| KOG2274|consensus | 1005 | 96.62 | ||
| KOG1991|consensus | 1010 | 96.59 | ||
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 96.58 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.54 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 96.53 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.46 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.43 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 96.4 | |
| KOG2025|consensus | 892 | 96.39 | ||
| KOG1058|consensus | 948 | 96.36 | ||
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.33 | |
| KOG2956|consensus | 516 | 96.31 | ||
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 96.24 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 96.21 | |
| KOG4535|consensus | 728 | 96.19 | ||
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.18 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.17 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 96.15 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.14 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 96.04 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.99 | |
| KOG1020|consensus | 1692 | 95.95 | ||
| KOG1967|consensus | 1030 | 95.93 | ||
| KOG1991|consensus | 1010 | 95.91 | ||
| KOG1243|consensus | 690 | 95.9 | ||
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 95.81 | |
| KOG1820|consensus | 815 | 95.79 | ||
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 95.76 | |
| KOG2611|consensus | 698 | 95.74 | ||
| KOG1243|consensus | 690 | 95.71 | ||
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 95.69 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.65 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 95.61 | |
| KOG2025|consensus | 892 | 95.6 | ||
| KOG1820|consensus | 815 | 95.59 | ||
| KOG2062|consensus | 929 | 95.59 | ||
| KOG3665|consensus | 699 | 95.34 | ||
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 95.27 | |
| KOG1949|consensus | 1005 | 95.13 | ||
| KOG3665|consensus | 699 | 95.12 | ||
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 94.96 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 94.94 | |
| KOG2032|consensus | 533 | 94.79 | ||
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 94.66 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 94.66 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 94.38 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 94.35 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 94.3 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 94.29 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.27 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 94.13 | |
| KOG2999|consensus | 713 | 94.04 | ||
| PRK14707 | 2710 | hypothetical protein; Provisional | 93.93 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 93.83 | |
| KOG2999|consensus | 713 | 93.82 | ||
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 93.71 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 93.63 | |
| KOG2137|consensus | 700 | 93.55 | ||
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 93.49 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 93.25 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 93.23 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 92.9 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 92.87 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 92.87 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 92.77 | |
| KOG1020|consensus | 1692 | 92.68 | ||
| KOG2933|consensus | 334 | 92.43 | ||
| KOG1832|consensus | 1516 | 92.33 | ||
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 92.32 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 92.25 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 92.07 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 91.88 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 91.45 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 91.32 | |
| KOG2137|consensus | 700 | 91.28 | ||
| KOG1949|consensus | 1005 | 91.18 | ||
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 90.72 | |
| KOG2933|consensus | 334 | 90.63 | ||
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 90.26 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 90.24 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 90.05 | |
| KOG0413|consensus | 1529 | 90.01 | ||
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 90.0 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 89.47 | |
| PF12463 | 303 | DUF3689: Protein of unknown function (DUF3689) ; I | 89.23 | |
| KOG0413|consensus | 1529 | 89.07 | ||
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 88.9 | |
| PF04064 | 58 | DUF384: Domain of unknown function (DUF384); Inter | 88.8 | |
| KOG2611|consensus | 698 | 88.06 | ||
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 87.82 | |
| KOG1566|consensus | 342 | 87.69 | ||
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 87.6 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 87.59 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 87.58 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 87.36 | |
| KOG1848|consensus | 1610 | 86.63 | ||
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 86.57 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 86.49 | |
| KOG1788|consensus | 2799 | 86.38 | ||
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 86.16 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 85.96 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 85.95 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 84.94 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 84.58 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 84.56 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 84.51 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 84.34 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 84.12 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 83.94 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 83.87 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.78 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 82.62 | |
| PF12726 | 727 | SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y | 82.55 | |
| PF11229 | 589 | DUF3028: Protein of unknown function (DUF3028); In | 82.49 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 82.27 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 82.23 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 82.23 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 82.13 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 82.0 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 82.0 | |
| KOG2038|consensus | 988 | 81.99 | ||
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 81.85 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 81.34 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 81.24 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 80.06 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 80.03 |
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=395.58 Aligned_cols=360 Identities=53% Similarity=0.881 Sum_probs=337.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|+.|+.++|++++.+.+++++.++..|++|.+++.|. ..++.++..|+|+|.|+++++.+....+++.|++|.|+.++.
T Consensus 83 q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~ 162 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS 162 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc
Confidence 7889999999999999999999999999999999994 667999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
+++..++++|+|+|+|++.+++.+|+.+...|++++|+.++...+...+.+++.|+|+|||++.+|.+.+.....++|.|
T Consensus 163 s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 163 SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987767899999999999999999999999999999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
..++++.|+++..+++|++++++.++++.++.+++.|++|.|+.+|.++++.++..|+++++|++.+++.+.+.+++.|+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHH----------------------------------------
Q psy10729 241 LQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------------------- 279 (363)
Q Consensus 241 l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~---------------------------------------- 279 (363)
++.|..++. ++...++++|+|+++|++.++.++++.+++
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 999999998 566779999999999999999999998887
Q ss_pred --------------------------HHHHHHHHHHHhcccc--hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 280 --------------------------EGLDNLLEIALQVGEL--NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 280 --------------------------~~l~~ll~~~~~~~~~--~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
+++.+|++.++..... +.+..+++++||+++++.|++|+|.+++++|..++.
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 6777888877776543 889999999999999999999999999999999999
Q ss_pred hhcCCCccCcc--CCCCccccCCCCCCCCCCCCC
Q psy10729 332 MAFNDSAENSI--ENGDTIEFNPQPVNTVNGFNF 363 (363)
Q Consensus 332 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 363 (363)
+||.++++++. +.-++|.|+++ .|.|||||
T Consensus 483 ~yf~~e~~~~~~~~~~~~~~~~~~--~~~~~f~f 514 (514)
T KOG0166|consen 483 TYFSEEDDEDDQQPTTSQFTFQVQ--APDGGFNF 514 (514)
T ss_pred HhcCCCcccccccccccccccCCC--CCCCCCCC
Confidence 99999855553 23338888888 59999999
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=356.88 Aligned_cols=360 Identities=48% Similarity=0.784 Sum_probs=332.8
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|+.|+..||++|+.+.+++++.+++.|++|.+++++ ..+....+..|+|+|.|++++.......+++.|++|.++.+|.
T Consensus 88 q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~ 167 (526)
T COG5064 88 QLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS 167 (526)
T ss_pred HHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc
Confidence 789999999999999999999999999999999999 6677888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+++..++++++|+|+|++.+++.+|+.+.+.|.+++++.++.+.. ...+.+++.|.|+|||++.+|.+.....+..+|.
T Consensus 168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpi 247 (526)
T COG5064 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247 (526)
T ss_pred CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999998543 3689999999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
|..++.+.|+++...|||++++++.++.+....+++.|+.++|+++|.+++..++..|++.++|++.+++.+.+.+++.|
T Consensus 248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH----------------------------------------
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------------------- 279 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~---------------------------------------- 279 (363)
+++.+-.+|.++...++++|||+++|+.+++.++++.+++
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 9999999999998899999999999999999999999988
Q ss_pred ----------------------------HHHHHHHHHHHhc-----ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 280 ----------------------------EGLDNLLEIALQV-----GELNQMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 280 ----------------------------~~l~~ll~~~~~~-----~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
+++.++++.++.. ...+.|..++++.||++.+..++++.|.+++.+|
T Consensus 408 ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KA 487 (526)
T COG5064 408 RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKA 487 (526)
T ss_pred HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHH
Confidence 4555555555442 1335788899999999999999999999999999
Q ss_pred HHHHHhhcCCCccCcc----CCCCccccCCCCCCCCCCCC
Q psy10729 327 YKIISMAFNDSAENSI----ENGDTIEFNPQPVNTVNGFN 362 (363)
Q Consensus 327 ~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 362 (363)
-.++++||++++.-++ -.+++|.|-+++- +++.||
T Consensus 488 YsIIe~fFgeeD~vd~lapet~g~tftfg~~~~-~qg~f~ 526 (526)
T COG5064 488 YSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN-QQGNFN 526 (526)
T ss_pred HHHHHHHcccchhhhhcCccccCCeeecCCCcc-ccCCCC
Confidence 9999999988754444 6789999999876 888776
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=285.09 Aligned_cols=267 Identities=27% Similarity=0.442 Sum_probs=246.6
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|.+|+.+|+++.+.+. +..+.+++.|.+|.|++++.+++.++++.|+|+|+|++.+++.+|+.+++.|++++|+.++.
T Consensus 126 lq~eAAWaLTnIAsgts-e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTS-EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred HHHHHHHHHHHHhcCch-hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 38899999999877766 45688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 81 SPHL-NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 81 ~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
.++. .+.+.+.|+|.|||++....-..-....++|.|..++.+.+ .++...++|++++|+.+.++..+.+...|++|.
T Consensus 205 ~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 205 KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR 283 (514)
T ss_pred cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence 7765 78899999999999776322233344778999999999988 599999999999999999888999999999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
++.+|.+.++.++..|+++++|+..+++.+.+.+++.|++|.|..++. ++...++++|||+++|++.++.++++.++++
T Consensus 284 LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida 363 (514)
T KOG0166|consen 284 LVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDA 363 (514)
T ss_pred HHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999998 5566699999999999999999999999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
|++|.|+.++++++.++|++|+|+++|++.+
T Consensus 364 ~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 364 NLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred ccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999975
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=262.71 Aligned_cols=267 Identities=27% Similarity=0.382 Sum_probs=244.1
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
.|.+|+.+|.++.+-+.+ ..+.+++.|.+|.++.+|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++.
T Consensus 131 lqfEAaWalTNiaSGtt~-QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 131 LQFEAAWALTNIASGTTQ-QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHHHhhhccCccc-ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH
Confidence 378999999998777664 4577899999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 81 SPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 81 ~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+.. .++.+.+.|+|+|||++...-..+-.-...+|.|.+++...+ .++...++|++++|+..+....+.+...|+.+
T Consensus 210 ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D-~evlvDA~WAiSYlsDg~~E~i~avld~g~~~ 288 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYLSDGPNEKIQAVLDVGIPG 288 (526)
T ss_pred hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcH
Confidence 654 488999999999999654332334444668999999998888 59999999999999999877788888899999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+-.+|+++...+|++|||+++|+..++.++.+.+++.
T Consensus 289 RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~ 368 (526)
T COG5064 289 RLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred HHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+++|+|+++|...+.+++++|||+++|...+
T Consensus 369 nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 369 NLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999998875
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=279.71 Aligned_cols=336 Identities=20% Similarity=0.257 Sum_probs=264.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|.+|+..+.++..... +.++.+++.|++|.|+++|.+ +++.+|+.|+|+|++++.++++.+..+++.|++|.|++++.
T Consensus 206 Q~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~ 284 (2102)
T PLN03200 206 QANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATV 284 (2102)
T ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 6788888887766644 468999999999999999965 56699999999999999999999999999999999999998
Q ss_pred CCC---------HHHHHHHHHHHHHhhCCCCc-----------hhHHH-------------------------hh-cCCh
Q psy10729 81 SPH---------LNLAEQATWALGNIAGDGAR-----------ARDLL-------------------------LG-LGTM 114 (363)
Q Consensus 81 ~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~~-------------------------~~-~g~i 114 (363)
.+. ..++++++|+|+|+|.+.+. .|... ++ ..+.
T Consensus 285 sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~ 364 (2102)
T PLN03200 285 APSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIE 364 (2102)
T ss_pred CcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccH
Confidence 654 34689999999999975222 10000 00 1112
Q ss_pred HHHHHhhC------------------------------------------CCCcHhHHHHHHHHHHHhhcCCCCCCCHHH
Q psy10729 115 PQILALVQ------------------------------------------PNTPTTFLRNIVWAISNLCRNKNPAPDFEK 152 (363)
Q Consensus 115 ~~L~~ll~------------------------------------------~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 152 (363)
+.|+++++ ..+ .+++..++|+|++++.+.+...+.+.
T Consensus 365 ~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~-~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 365 QILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT-ADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC-HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444443 233 47888999999999988766666777
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
..+.+|.|+.+|.++++.+++.+++++++++.++++.+..+++.|++|.|+++|.++++++++.|+|+|+|++.++++..
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 78999999999999999999999999999999888888899999999999999999999999999999999998666665
Q ss_pred HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH-------HHHHHHHHHHHh---cccchH-HHH
Q psy10729 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ-------EGLDNLLEIALQ---VGELNQ-MAL 300 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~-------~~l~~ll~~~~~---~~~~~~-~~~ 300 (363)
..+.++|+++.|+++++++++++++.|+|+|.|++.+ +..++..+++ ......++.... ....+. ...
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 5566889999999999999999999999999999875 4555555444 111112221111 111111 222
Q ss_pred HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCcc
Q psy10729 301 LVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 301 ~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
.....||++.|.+|+.++++++++.|.++|.+|+....+
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 334579999999999999999999999999999987655
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=267.50 Aligned_cols=330 Identities=13% Similarity=0.127 Sum_probs=280.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|.+++.++..+... ++..++.+++.|++|.|+++|.+++..+|..|+++|++++.++++.+..+++.|++|.|+++|.+
T Consensus 421 Q~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 421 QEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 67888999886544 44778999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++.++++.|+|+|+|++.+++..+..+...|++|+|+++|.+.+ .+.+..++|+|.+++.+.+. ..++.++
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv 570 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVRTADA--------ATISQLT 570 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhccch--------hHHHHHH
Confidence 99999999999999999987777777778899999999999886 59999999999999887532 2447788
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChh---hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHND---KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
.++.++++.++..++.+++++....+. ........|+++.|+++++++++.+++.|+|+|.+++.++++..+.++..
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 999999999999999999998653332 22223356899999999999999999999999999999999988999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH-HHHHHHHHHHHh---------------cccchHHHHH
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ-EGLDNLLEIALQ---------------VGELNQMALL 301 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~-~~l~~ll~~~~~---------------~~~~~~~~~~ 301 (363)
|++++++.++.+++.+++++|+|+|.|++.. +.+++..+++ .++..+++.... +......+..
T Consensus 651 gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~e 730 (2102)
T PLN03200 651 EIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730 (2102)
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHH
Confidence 9999999999999999999999999999975 5566666666 344444443322 1222345667
Q ss_pred HHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 302 VEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
+.+.|+++.|.+++.++++++++.|.++|..+......++
T Consensus 731 i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 7788999999999999999999999999998777665444
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=206.37 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=237.7
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHh
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQL 78 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~l 78 (363)
+|+.|+.+|.++.+..+++ +.++..|++|.|++++++.+.++|+.+..++++++- +...|+.+.+.+ .+|.|+.+
T Consensus 183 vqrnatgaLlnmThs~EnR--r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 183 VQRNATGALLNMTHSRENR--RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred HHHHHHHHHHHhhhhhhhh--hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence 4888999999988877655 999999999999999999999999999999999994 578888888887 99999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+++++++++.+|..+|+|++.+.. ++..+.+.|.+|.++++++++. .......+.|+.|++-++ -........|++.
T Consensus 260 md~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnisihp-lNe~lI~dagfl~ 336 (550)
T KOG4224|consen 260 MDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNISIHP-LNEVLIADAGFLR 336 (550)
T ss_pred HhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhccccc-Ccccceecccchh
Confidence 999999999999999999998854 5678888999999999998776 467777788999999986 3344556789999
Q ss_pred HHHHhhccCC-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 159 LLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 159 ~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
.++.+|...| .+++..|..+|++++..+......+++.|.+|.+.+++.+..-+++...-.+++.++. ++..+..+.+
T Consensus 337 pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld 415 (550)
T KOG4224|consen 337 PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLD 415 (550)
T ss_pred HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhh
Confidence 9999999866 4599999999999998777778899999999999999999988999999889998877 5566678999
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
.|+++.|+.+..+.+.+++-+|+.+|.|++..-.+ ..++++
T Consensus 416 ~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-YarviE 456 (550)
T KOG4224|consen 416 SGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-YARVIE 456 (550)
T ss_pred cCCcceeecccCccchhhcccHHHHHHhhhhhhHH-HHHHHH
Confidence 99999999999999999999999999999987433 344454
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=198.12 Aligned_cols=304 Identities=21% Similarity=0.249 Sum_probs=268.8
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.++.++.+.+++. ..+...|++.++.++-++.+..+|..+..+|.|+. +..+.|..++..|++|.|+.++++
T Consensus 143 qcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s 219 (550)
T KOG4224|consen 143 QCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKS 219 (550)
T ss_pred Eeeehhhhhhhhccccch--hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhcc
Confidence 667899999999997654 78889999999999779999999999999999999 778999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcC--ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
.+..+++.|+.+++|++.+ ...|+.+.+.+ .+|.|+.++.++++ +++-.+.-+|.+++.+.+. ...+...|.+|.
T Consensus 220 ~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~ 296 (550)
T KOG4224|consen 220 GDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDTEY-QREIVEAGSLPL 296 (550)
T ss_pred CChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccchh-hhHHHhcCCchH
Confidence 9999999999999999976 45678888887 99999999998885 8999999999999998633 334566899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh-hhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET-TILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
++++++++-....-....|+.|++-.+-+. ..+.++|.+..|+++|...+. +++..|..+|.|++..++.....+++.
T Consensus 297 lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 297 LVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES 375 (550)
T ss_pred HHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence 999999988888888899999999766543 567899999999999988755 599999999999999888888999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE 318 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~ 318 (363)
|.++++..++-++...++.+...++..++.... .+..+.+.|.++.|...+.+.
T Consensus 376 gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--------------------------~k~~lld~gi~~iLIp~t~s~ 429 (550)
T KOG4224|consen 376 GAIPKLIELLLDGPVSVQSEISACIAQLALNDN--------------------------DKEALLDSGIIPILIPWTGSE 429 (550)
T ss_pred CchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--------------------------cHHHHhhcCCcceeecccCcc
Confidence 999999999999999999998888888876532 236889999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCc
Q psy10729 319 NETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 319 ~~~v~~~a~~~l~~~~~~~~ 338 (363)
+.||+..|..++-++.++.+
T Consensus 430 s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 430 SEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred chhhcccHHHHHHhhhhhhH
Confidence 99999999999998877654
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=187.32 Aligned_cols=339 Identities=17% Similarity=0.217 Sum_probs=260.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
.++..|.++..+.. ....+.+.|+++.|+++|++++.++...++.+|.+++. ..+++..+.+.|+++.|.+++.+++
T Consensus 268 v~~~lLlNLAed~~--ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 268 VAFYLLLNLAEDPR--VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHhcChH--HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 45666777655553 45888999999999999999999999999999999995 5778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
.+++..++++|.||+.+ +..|..++..|++|.|+.+|.+++ .+..++.+|.+++.+++ ........+++|.++.+
T Consensus 345 ~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQM 419 (708)
T ss_pred HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHH
Confidence 99999999999999977 668999999999999999998653 45668889999999864 34444556789999886
Q ss_pred hcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-------------------------------------
Q psy10729 164 IHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL------------------------------------- 205 (363)
Q Consensus 164 l~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l------------------------------------- 205 (363)
+-. +++.+...+++.+.|++...... +.+.+.|+++.|++.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~ 498 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKI 498 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 544 66667777788888887666543 555665556555543
Q ss_pred hcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHH---
Q psy10729 206 LDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQ--- 279 (363)
Q Consensus 206 L~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~--- 279 (363)
+.. ++++...+++++|+|+...+.+..+.+-+.+++|.|.+.+..+ ++++.-+++..++.++.. +.....+.+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgl 577 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGL 577 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCCh
Confidence 222 2456888999999999876666666666789999999999765 567899999999988864 233333332
Q ss_pred ---------------HHHHHHHHHHHhcccchHHHH-HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCcc-
Q psy10729 280 ---------------EGLDNLLEIALQVGELNQMAL-LVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI- 342 (363)
Q Consensus 280 ---------------~~l~~ll~~~~~~~~~~~~~~-~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~- 342 (363)
+.+..++.....+-...+.+. .+.+.+...+|.++.++.|++|++.|..+|.-..+.+++|..
T Consensus 578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 333333333343333344444 456678899999999999999999999999999999998887
Q ss_pred CCCCccccCC
Q psy10729 343 ENGDTIEFNP 352 (363)
Q Consensus 343 ~~~~~~~~~~ 352 (363)
++..+|.+||
T Consensus 658 i~~~kF~~hN 667 (708)
T PF05804_consen 658 IRREKFRWHN 667 (708)
T ss_pred hhHHHHHHHH
Confidence 5555555544
|
|
| >KOG4199|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-18 Score=140.15 Aligned_cols=303 Identities=12% Similarity=0.134 Sum_probs=240.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
+++.++..+... + ..+.+..++..++.+| +.++.++....+.++..-+..++..|..+++.+++|.+...+..
T Consensus 126 ksL~al~~lt~~-q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~ 200 (461)
T KOG4199|consen 126 KSLEAINSLTHK-Q----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNR 200 (461)
T ss_pred HHHHHHHHhhcC-C----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcc
Confidence 455666654333 2 3467889999999999 66788999999999999998899999999999999999977764
Q ss_pred -CCHHHHHHHHHHHHHhhCCCC---------chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 82 -PHLNLAEQATWALGNIAGDGA---------RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 82 -~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
....+.+.++|+++-|..+++ .....+...|++..|++.+.-.-++.....++.+|..|+...+ ....+
T Consensus 201 ~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I 279 (461)
T KOG4199|consen 201 EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSI 279 (461)
T ss_pred cCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHH
Confidence 445688899999999986653 2235667788999999999854445788889999999988753 33345
Q ss_pred HHHhHHHHHHHhhccCC----hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh--cCCChhhHHHHHHHHHHhh
Q psy10729 152 KIKICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTILTAALRTVGNIA 225 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL--~~~~~~v~~~a~~~L~nl~ 225 (363)
...|.+..+++++.+.+ .++.+.++..|+.++..++. +..+++.|+.+.++.++ .+++|.+...++.+++-++
T Consensus 280 ~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv-Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 280 AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV-KSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC 358 (461)
T ss_pred HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch-HHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 56889999999998733 34668899999999866554 58889999999999987 3468889999999999999
Q ss_pred cCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHH
Q psy10729 226 TGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV--GELNQMALL 301 (363)
Q Consensus 226 ~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~~~~~ 301 (363)
...++....+++.|+-...++.|+-. ...++++|+|.+.|++..+.++.+.++..|+..++..+..- .........
T Consensus 359 LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaA 438 (461)
T KOG4199|consen 359 LRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAA 438 (461)
T ss_pred hcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHH
Confidence 99999999999999999999999654 46799999999999999999998888888888888766552 222344556
Q ss_pred HHHcCcHHHHHH
Q psy10729 302 VEESGGLEKLEA 313 (363)
Q Consensus 302 l~~~~~~~~L~~ 313 (363)
+++.|.-..+-+
T Consensus 439 LRDLGc~v~lre 450 (461)
T KOG4199|consen 439 LRDLGCDVYLRE 450 (461)
T ss_pred HHhcCcchhhHH
Confidence 777766555443
|
|
| >KOG1048|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-16 Score=144.66 Aligned_cols=310 Identities=17% Similarity=0.234 Sum_probs=229.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc--hh
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR--AR 105 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~--~~ 105 (363)
--+|..+.+|.+.++.++..|..-+-.++.++.+.+..+.+.|+|+.++.++.+++.+|+.+++++|.||...+.. .+
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3467788899999999999999999999999999999999999999999999999999999999999999966554 67
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc--------------CChhh
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--------------TDVET 171 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--------------~~~~v 171 (363)
-.+.+.++++.++++|+...+.++++.+..+|+||++++ ..........+..|....-. .+.++
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 778889999999999996555799999999999999984 22233334444444433211 13456
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhc-------------------------------------------
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLD------------------------------------------- 207 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~------------------------------------------- 207 (363)
..++..||+|++....+..+.+.+. |++..|+..++
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 6777778888776555444444432 44444444332
Q ss_pred -----------------------------------------------------------CCChhhHHHHHHHHHHhhcCC
Q psy10729 208 -----------------------------------------------------------SEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 208 -----------------------------------------------------------~~~~~v~~~a~~~L~nl~~~~ 228 (363)
+.++.+.+.++.+|.|++.+.
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 123446678888888888754
Q ss_pred hh----HHHHH-HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC--HHH-----HHHHHH-------------HHHH
Q psy10729 229 DH----QTDCV-IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN--SRQ-----IDHVIQ-------------EGLD 283 (363)
Q Consensus 229 ~~----~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~--~~~-----~~~~~~-------------~~l~ 283 (363)
.. .+..+ ..+.+++.|+.++..+++.+.+.++.+|.|++.+- .+. +..+++ +.+.
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHH
Confidence 32 23333 57789999999999999999999999999999863 222 122222 3344
Q ss_pred HHHHHHHhc-ccchHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhhcCCCcc
Q psy10729 284 NLLEIALQV-GELNQMALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 284 ~ll~~~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
.++.....+ .....++..+.+.+|+++|.-+..+ .++.+.+.|...+..+|.+.+-
T Consensus 631 ~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 631 AVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 2345567889999999999998655 4679999999999999887653
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-16 Score=146.28 Aligned_cols=263 Identities=19% Similarity=0.264 Sum_probs=198.7
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
-++..|.++.-..+ +...+.+.|+++.|.+++.+++.+++..++++|.|++ .++..|..+++.|++|.|+.++.+++
T Consensus 309 l~v~fLkkLSi~~E--NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 309 LAVTFLKKLSIFKE--NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 45566666544444 4699999999999999999999999999999999999 56889999999999999999998764
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHH-----------------------------
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV----------------------------- 134 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~----------------------------- 134 (363)
.+..++.+|.+++.+ +..|..+...+++|.+++++....+.++...++
T Consensus 386 --~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 386 --FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred --hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHH
Confidence 556688899999876 457788888888888888665322212211111
Q ss_pred ---------HHHHHhhcCCC-----------------------------------------CCCCHHHHHhHHHHHHHhh
Q psy10729 135 ---------WAISNLCRNKN-----------------------------------------PAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 135 ---------~~L~~l~~~~~-----------------------------------------~~~~~~~~~~~i~~l~~ll 164 (363)
.+++|++.++. .-.......+++|.+..+|
T Consensus 463 ~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L 542 (708)
T PF05804_consen 463 LKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLL 542 (708)
T ss_pred HhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHh
Confidence 13334443331 1112223356778888887
Q ss_pred ccC--ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 165 HTT--DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 165 ~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
..+ ++++.-.++..++.++.... ....+.+.|+++.++.+++.. |.+.....++++.++..+.+.....+-+.++
T Consensus 543 ~~g~~~dDl~LE~Vi~~gtla~d~~-~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~ 621 (708)
T PF05804_consen 543 KPGASEDDLLLEVVILLGTLASDPE-CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEI 621 (708)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCHH-HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccch
Confidence 653 45688888899998886544 457778899999999999654 6789999999999999976655444445789
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
...|+.++++.++++++-|-.+|--++..+++.
T Consensus 622 ~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 622 PAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 999999999999999999999999998877655
|
|
| >KOG2122|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=152.02 Aligned_cols=267 Identities=19% Similarity=0.192 Sum_probs=222.0
Q ss_pred hh-HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC--C----------CChhHHHHHHHHHHHhcCCChHhHHHHH-
Q psy10729 2 RM-IATRSARKMLSKERHPPIDELIEAGVVPICVELLD--D----------ENPNTQFEATWALTNIASGTSEQTMTVI- 67 (363)
Q Consensus 2 q~-~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~- 67 (363)
|+ .|+..|.+ +++++ ++...+-+.|+++.+-+||. . ....++.+|..+|.||..++..++..+-
T Consensus 314 ~lcaA~~~lMK-~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 314 QLCAALCTLMK-LSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhHHHHHHHHH-hhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 45 67788888 46655 56688999999999999882 1 1236899999999999998877766554
Q ss_pred hCCChHHHHHhcCCCCHHHHHHHHHHHHHhh-CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-
Q psy10729 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN- 145 (363)
Q Consensus 68 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~- 145 (363)
..|++..++..|.+..+++....+.+|.||+ +-+...++.+-+.|-+..|+........+...+.++.+|+||+.+..
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 4599999999999988899999999999998 33345667777889999998876544446788889999999997653
Q ss_pred CCCCHHHHHhHHHHHHHhhccCC----hhhHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q psy10729 146 PAPDFEKIKICLPLLNQLIHTTD----VETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 218 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~~ll~~~~----~~v~~~al~~L~~l~---~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~ 218 (363)
++..+....|.+.+|+.+|.... -.|++.+-.+|.|.+ .....+.+.+.++.++..|++.|++.+-.+...+|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 44566677899999999998753 457888888888876 33455668889999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 219 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 219 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.+|+||...++...+.+++.|++++|..++.+++..+.+.++.+|.|+....
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998764
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=122.57 Aligned_cols=243 Identities=21% Similarity=0.206 Sum_probs=179.0
Q ss_pred HHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 24 LIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 24 ~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
..+.+-++.|+.+| .+.++.+++.++.++++.+ ..+..++.+.+.|+++.+..++.++++.++..|++++.|++...+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 36677889999999 4679999999999999998 568999999999999999999999999999999999999987643
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
.+..+. ..++.+++ .+... .-+..++..++++|.++
T Consensus 87 -n~~~Ik--~~i~~Vc~-------------------~~~s~----------------------~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 87 -NQEQIK--MYIPQVCE-------------------ETVSS----------------------PLNSEVQLAGLRLLTNL 122 (254)
T ss_pred -hHHHHH--HHHHHHHH-------------------HHhcC----------------------CCCCHHHHHHHHHHHcc
Confidence 322221 01111111 11111 12456777888888888
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAW 261 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~ 261 (363)
+..++.. .. + .+.++.++++|.+++..++..++++|.||+. ++...+.++..+++..++.+++.. +.++...+.+
T Consensus 123 tv~~~~~-~~-l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 123 TVTNDYH-HM-L-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred CCCcchh-hh-H-HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 8665542 33 3 2469999999999999999999999999977 677778899999999999999876 6788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcC-cHHHHHHHhcCCcHHHHHHH
Q psy10729 262 TISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESG-GLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 262 ~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~-~~~~L~~l~~~~~~~v~~~a 326 (363)
.+.|+..+-......+. +...........+.+.+ .-++|..+.+|+++||+++.
T Consensus 199 ~~~ni~~~~~~~~~~~~-----------~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 199 FFENINENIKKEAYVFV-----------QDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHhhCcccceec-----------cccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 99999764111100000 00011122334555555 56788899999999999874
|
|
| >KOG4199|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-13 Score=113.73 Aligned_cols=302 Identities=17% Similarity=0.208 Sum_probs=229.2
Q ss_pred cCCHHHHHHhc---CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC--CCHHHHHHHHHHHHHhhCCC
Q psy10729 27 AGVVPICVELL---DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDG 101 (363)
Q Consensus 27 ~g~l~~L~~lL---~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~nl~~~~ 101 (363)
.|..+.++.++ .+++..+...++.+|..+....|+. ++..+...++.+|.. +++++....+.++..-|...
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 36666666655 5677788899999999998666654 557888899999863 45678888888888888877
Q ss_pred CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH---------HHHHhHHHHHHHhhcc-CChhh
Q psy10729 102 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF---------EKIKICLPLLNQLIHT-TDVET 171 (363)
Q Consensus 102 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~---------~~~~~~i~~l~~ll~~-~~~~v 171 (363)
+..|+.+++.++++.+...+.......+.+.++|+++.|..+++....+ ....++...|.+.++. -||.+
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~ 258 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS 258 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence 8899999999999999987764444479999999999999887654322 2234567778888775 57999
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh-h---hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET-T---ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~-~---v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
...++.+|..++-.++- .+.+.+.|++..+++++.+.+. . ..+.++..|..++ ++++....+++.|+.+.++.+
T Consensus 259 L~~l~~tl~~lAVr~E~-C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 259 LVSLSTTLKALAVRDEI-CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHH
Confidence 99999999999976654 5788999999999999987433 3 5577788888875 578888899999999999999
Q ss_pred hc--CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHhcc------------------cchHHHHHHHHcC
Q psy10729 248 LS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL-LEIALQVG------------------ELNQMALLVEESG 306 (363)
Q Consensus 248 l~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~l-l~~~~~~~------------------~~~~~~~~l~~~~ 306 (363)
+. .++|.|..+++.+++-++..++++...+++.|...+ ++...... ....++..+. ..
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~ 415 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-AN 415 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hc
Confidence 84 468999999999999999999999999998333222 22221110 1111222222 34
Q ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 307 GLEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 307 ~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
|+++|.+.-...++.....|..+|..+=.
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 88888888888888888888888876533
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=119.31 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=188.2
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
..--++.|.++|.+++..++..|++.|..+.. ..+++.+..+++++++.+|..++++|+.+......
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 34567889999999999999999999998873 25678888999999999999999999999643211
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
....++.|..++..+.+..++..++.+|++++.... .. ....+..+...+.++++.++..++++|+.+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-cc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 123567788775544446999999999999975431 11 23355667778888999999999999987742
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
+ ..++.|+.++.++++.||..|+.+|+.+..+++ .+++.|+..+.+.++.|+..|+++|+.
T Consensus 158 -~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 -E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred -H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 1 237899999999999999999999999943333 356779999999999999999999998
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcC---cHHHHHHHhc-CCcHHHHHHHHHHHHh
Q psy10729 266 ITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESG---GLEKLEALQH-HENETVYQKCYKIISM 332 (363)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~---~~~~L~~l~~-~~~~~v~~~a~~~l~~ 332 (363)
+- ++..+..+++ ....-.-.......+.+.| .++.|..+++ +++++|+.+|.+++.+
T Consensus 219 ~~--~~~av~~Li~--------~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 219 RK--DKRVLSVLIK--------ELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred cC--ChhHHHHHHH--------HHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 63 3333333332 2211100112223344443 5778888875 8899999999999874
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-13 Score=124.58 Aligned_cols=259 Identities=18% Similarity=0.222 Sum_probs=205.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCH
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 84 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~ 84 (363)
++..|.+++.... + ..+ ..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++.+++.
T Consensus 58 ~~~iL~~~l~~~~-~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 58 ICDILKRLLSALS-P--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHhccC-H--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH
Confidence 3455666666543 1 222 56788899999999999999999999999998777777888889999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
.+...|+.+|.+++...+.. +.++..++++.|..++...+ ..++..+..++.+++..++.........|+++.++..+
T Consensus 134 ~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL 211 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL 211 (503)
T ss_pred HHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999875544 56777888999999998755 47888899999999988755556666788999999999
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--Ch---h-hHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ET---T-ILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
+++|.-++.+++.++..++. .+...+.+.+.|+++.+..++.+. +| . ..-..+...++++...+....... .
T Consensus 212 ~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p 289 (503)
T PF10508_consen 212 DSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-P 289 (503)
T ss_pred cCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-H
Confidence 99999999999999999998 444568899999999999999654 33 1 223344677778775443332222 2
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 271 (363)
.++..+..++.+.++..+..|.-+++.++....
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 456667777788899999999999999986643
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2122|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-14 Score=137.12 Aligned_cols=307 Identities=19% Similarity=0.217 Sum_probs=238.0
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC---CCChhHHHHHHHHHHHhcCCCh-------------------
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLD---DENPNTQFEATWALTNIASGTS------------------- 60 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~---~~~~~i~~~a~~~L~~l~~~~~------------------- 60 (363)
.+-++.|+.+.+..+. .-.+...|+++.|+++|. ..+.+.+..|-.+|.||....+
T Consensus 212 ee~ar~fLemSss~es--CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPES--CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred HHHHHHHHHhccCchh--hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4556777776665543 367888999999999993 3355666666667777664443
Q ss_pred ----------------------------------------HhHHHHHhCCChHHHHHhcCC---------CC---HHHHH
Q psy10729 61 ----------------------------------------EQTMTVINANAIPKFLQLLSS---------PH---LNLAE 88 (363)
Q Consensus 61 ----------------------------------------~~~~~i~~~~~i~~l~~ll~~---------~~---~~v~~ 88 (363)
+.|..+-+.|++..+-.+++- .+ -.+++
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRr 369 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRR 369 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 345555667888887777641 11 36899
Q ss_pred HHHHHHHHhhCCCCchhHHHh-hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHH-hhc
Q psy10729 89 QATWALGNIAGDGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQ-LIH 165 (363)
Q Consensus 89 ~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~-ll~ 165 (363)
.+..+|.||..++...+..+. ..|++..++..|.... +++....+.+|.||+...+.. .......|-+..|+. .++
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 999999999977666655554 6789999999998766 588999999999999876543 344445566666665 455
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCC----hhhHHHHHHHHHHhhc---CChhHHHHHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEE----TTILTAALRTVGNIAT---GNDHQTDCVIQ 237 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~---~~~~~~~~l~~ 237 (363)
.......+..+.+|+||+.+..+++..+.. -|++..|+.+|.... ..+.+.|-.+|.|+.. .++.+++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 667788999999999999888776666554 488999999997653 3578888888888765 46778889999
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH 317 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 317 (363)
++.+..|++.|++.+-.+..++|.+|+||...+++. .++|.+.|++..|..|.++
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-------------------------Qq~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-------------------------QQMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-------------------------HHHHHhcccHHHHHHHHhh
Confidence 999999999999999999999999999999987765 4789999999999999999
Q ss_pred CcHHHHHHHHHHHHhhcCCC
Q psy10729 318 ENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~~~~~~ 337 (363)
.+.-+..-+..+|.++....
T Consensus 584 KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 584 KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhHHHHHHHHhcCC
Confidence 99998888888888887766
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=120.35 Aligned_cols=313 Identities=16% Similarity=0.219 Sum_probs=230.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|.-++..+.++....+ ...+.+.+.++++.++..+.+++..+...|+.+|.+++.. +.....+++.+.++.|..++..
T Consensus 94 r~l~l~~l~~~~~~~~-~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~ 171 (503)
T PF10508_consen 94 RRLALKQLGRIARHSE-GAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQ 171 (503)
T ss_pred HHHHHHHHHHHhcCCH-HHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhc
Confidence 4556777777665543 4567788899999999999999999999999999999964 5566678888899999999998
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
+++.+|..+..++.+++..++.....+...|+++.++..+.++| .-++.+++.++..|+..+ .........|+++.|.
T Consensus 172 ~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD-iLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 172 SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD-ILVQLNALELLSELAETP-HGLQYLEQQGIFDKLS 249 (503)
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc-HHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHH
Confidence 88899999999999999999999899999999999999999854 688999999999999954 5556667789999999
Q ss_pred HhhccC--Ch---h-hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 162 QLIHTT--DV---E-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 162 ~ll~~~--~~---~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
.++.+. || . .....+...++++...+....... ...+..+.+++.+.++..+..|+.+++.++.. .+..+.+
T Consensus 250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L 327 (503)
T PF10508_consen 250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLL 327 (503)
T ss_pred HHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHH
Confidence 999763 33 1 223344677778765443221111 13345566677788999999999999999874 4444445
Q ss_pred -HHc-----CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHc--C
Q psy10729 236 -IQA-----GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLDNLLEIALQVGELNQMALLVEES--G 306 (363)
Q Consensus 236 -~~~-----~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~--~ 306 (363)
... .++..+.....++..+++..+..++.++..... ..-..+. .+.+ ..+... +
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~-----~~~~------------~w~~~~~~~ 390 (503)
T PF10508_consen 328 LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL-----SITE------------SWYESLSGS 390 (503)
T ss_pred HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-----HHHH------------HHHHHhcCC
Confidence 332 245555555567788999999999999964321 1111111 1111 111111 1
Q ss_pred cHH-HHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 307 GLE-KLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 307 ~~~-~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
-.. .+..+.+.|-+++|-.+-.++..+...+
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 222 6777888999999999988888887765
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-14 Score=105.60 Aligned_cols=119 Identities=32% Similarity=0.570 Sum_probs=110.0
Q ss_pred HHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 23 ~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
.+++.|+++.+++++.+.+++++..++++|++++..++.....+.+.+++|.++.++.++++.++..++|+|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999988889999999999999998888999999999999999999999999999999999999998877
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
..+..+...|+++.+++++...+ .++++.++|+|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence 77778888999999999999776 6999999999999874
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1048|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-13 Score=124.28 Aligned_cols=261 Identities=21% Similarity=0.248 Sum_probs=200.0
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChH--hHHHHHhCCChHHHHHhcCC-C
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE--QTMTVINANAIPKFLQLLSS-P 82 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~--~~~~i~~~~~i~~l~~ll~~-~ 82 (363)
+.+..+++|.+++.....+.+.|+++.|+.+|.+...+++.+|+++|.|+..++.. ++..+.+.++|+.+++++.. .
T Consensus 253 aaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~ 332 (717)
T KOG1048|consen 253 AAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQ 332 (717)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhc
Confidence 55677788999887778888889999999999999999999999999999987655 78889999999999999985 7
Q ss_pred CHHHHHHHHHHHHHhhCCC------------------------------------------------------CchhHHH
Q psy10729 83 HLNLAEQATWALGNIAGDG------------------------------------------------------ARARDLL 108 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~------------------------------------------------------~~~~~~~ 108 (363)
|.++++.+..+|+||+..+ .+.|+.+
T Consensus 333 D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~m 412 (717)
T KOG1048|consen 333 DDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQM 412 (717)
T ss_pred chHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHH
Confidence 8899999999999987542 1222333
Q ss_pred h-hcCChHHHHHhhC-----CCCcHhHHHHHHHHHHHhhc----------------------------------------
Q psy10729 109 L-GLGTMPQILALVQ-----PNTPTTFLRNIVWAISNLCR---------------------------------------- 142 (363)
Q Consensus 109 ~-~~g~i~~L~~ll~-----~~~~~~~~~~~~~~L~~l~~---------------------------------------- 142 (363)
. ..|+|+.|+..++ +..+...+++++-.+.|++.
T Consensus 413 r~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~ 492 (717)
T KOG1048|consen 413 RECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKS 492 (717)
T ss_pred hhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhc
Confidence 2 2456676665554 11112444444444454432
Q ss_pred --------------------------------------------------------CCCCCC-----CHHHHHhHHHHHH
Q psy10729 143 --------------------------------------------------------NKNPAP-----DFEKIKICLPLLN 161 (363)
Q Consensus 143 --------------------------------------------------------~~~~~~-----~~~~~~~~i~~l~ 161 (363)
...... .+.......|.|+
T Consensus 493 ~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~ 572 (717)
T KOG1048|consen 493 DDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLV 572 (717)
T ss_pred hhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHH
Confidence 211110 0012233478899
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC------hhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE------TTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~------~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++++.+|..+...++.+|+|++.+... +.++..++++.|++.|.... .++...+|.+|.|++..+....+.+
T Consensus 573 ~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl 650 (717)
T KOG1048|consen 573 ELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDL 650 (717)
T ss_pred HHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 999999999999999999999988765 44566889999999996543 4688999999999999999999999
Q ss_pred HHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhc
Q psy10729 236 IQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA 268 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~ 268 (363)
.+.++++.|+.+..+. ++++.+.|+..|..|=.
T Consensus 651 ~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 651 LEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999775 67888888888877743
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=120.84 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=208.5
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
.|++|+.-|..++...+......+--.-++|.|+.+| ...+.+++..|+++|.+++.--|+....+++.++||.|+.-|
T Consensus 184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL 263 (1051)
T KOG0168|consen 184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKL 263 (1051)
T ss_pred HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhh
Confidence 3889999999999988766555555667899999999 556899999999999999988899999999999999999877
Q ss_pred CC-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 80 SS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 80 ~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
.. .-.++.++++.+|-.|++..+ ..+.+.|++...+..+.--. ..+++.|+.+.+|+|..- ....+....+.+|
T Consensus 264 ~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi-~sd~f~~v~ealP 338 (1051)
T KOG0168|consen 264 LTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSI-RSDEFHFVMEALP 338 (1051)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-CCccchHHHHHHH
Confidence 64 447899999999999998755 46778999999999887544 578999999999999876 3445567789999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccC---ChhhHHHHHhcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChhH
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDG---HNDKIQAVVDTGVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~ 231 (363)
.|..+|++.|.+..+.++-++..++.+ .++..+.+...|++....+++.-.. ..+....++.+..++++++..
T Consensus 339 lL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 339 LLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence 999999999999999999999999743 4566788888999999999996543 347788889999999998988
Q ss_pred HHHHHHcCchHHHHHhhcCC
Q psy10729 232 TDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l~~~ 251 (363)
...+...++...|..++...
T Consensus 419 ~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 419 FRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHhhHHHHHHHHHhcc
Confidence 88999999999999999654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=103.28 Aligned_cols=117 Identities=39% Similarity=0.589 Sum_probs=108.7
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
...|+++.++.++.++++.++..+++++++++...+.....+++.|+++.+++++.++++.++..++++|++++...+..
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 45678999999999999999999999999999997777788888999999999999999999999999999999988777
Q ss_pred HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 232 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...+.+.|+++.+++.+++++.++++.|+|+|.|++.
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 8888999999999999999999999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1222|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-12 Score=111.75 Aligned_cols=334 Identities=18% Similarity=0.173 Sum_probs=230.8
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHH
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNL 86 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v 86 (363)
..+.+-++.-. ++...+.+.|++..|++++..+.++++...+..+-|++. +...|.++++.|.+|.+..++.+..-
T Consensus 325 ~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~-- 400 (791)
T KOG1222|consen 325 IKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK-- 400 (791)
T ss_pred HHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--
Confidence 33333344332 345888999999999999999999999999999999996 46788999999999999999987642
Q ss_pred HHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH-Hhhc
Q psy10729 87 AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN-QLIH 165 (363)
Q Consensus 87 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~-~ll~ 165 (363)
...|+..+..++.+ +..+..+.....++.++..+-...+.++-......--|+|.+..+. +.+.....+..++ ..++
T Consensus 401 ~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa-QlvceGqgL~~LM~ra~k 478 (791)
T KOG1222|consen 401 HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA-QLVCEGQGLDLLMERAIK 478 (791)
T ss_pred chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc-eEEecCcchHHHHHHHhc
Confidence 23477788888876 4567888889999999987765544566655555556777765333 2222233444443 4566
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 244 (363)
+.|+-+ ...++|++.+.......+++ .+..|...++.. +.....+++.+++|+....-...+.+-+.+.+|++
T Consensus 479 ~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~ 552 (791)
T KOG1222|consen 479 SRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWM 552 (791)
T ss_pred ccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHH
Confidence 666554 34778888777654455553 467777777655 44578889999999987666666777778999999
Q ss_pred HHhhcCC--hHhHHHHHHHHHHHHhcCCH--------HHHHHHHH---------HHHHHHHHHHHh-cccchHHHHHHHH
Q psy10729 245 KKLLSSS--RVNIVKEAAWTISNITAGNS--------RQIDHVIQ---------EGLDNLLEIALQ-VGELNQMALLVEE 304 (363)
Q Consensus 245 ~~~l~~~--~~~v~~~a~~~L~nl~~~~~--------~~~~~~~~---------~~l~~ll~~~~~-~~~~~~~~~~l~~ 304 (363)
-..++.+ ..++.-..+.+++.++.... ..+..+++ +.+..++....+ +........++.+
T Consensus 553 k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~mike 632 (791)
T KOG1222|consen 553 KTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKE 632 (791)
T ss_pred HHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999876 45566666666666665421 11222222 223333332222 1222223456777
Q ss_pred cCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCcc-CCCCccccCC
Q psy10729 305 SGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI-ENGDTIEFNP 352 (363)
Q Consensus 305 ~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~ 352 (363)
...-..+.+|.|+.|.++|+.+..++.-..+++++|+- +.+..|.+|+
T Consensus 633 t~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~EkFrwHN 681 (791)
T KOG1222|consen 633 TALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEKFRWHN 681 (791)
T ss_pred ccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccch
Confidence 77788999999999999999999999888888888876 4444554444
|
|
| >KOG4500|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-12 Score=109.17 Aligned_cols=301 Identities=13% Similarity=0.103 Sum_probs=204.9
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC----C---CHHHHHHHHHHHHH
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS----P---HLNLAEQATWALGN 96 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~----~---~~~v~~~a~~~L~n 96 (363)
-++.+.+..|.+..+|++.++..++.++|+|++.++.+.|..+.+.|+-..++++|+. . +++...-+...|.|
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 3566777777777788889999999999999999999999999999997777777762 1 24677778899999
Q ss_pred hhCCCCchhHHHhhcCChHHHHHhhCCCC-c--------------------------------------------HhHHH
Q psy10729 97 IAGDGARARDLLLGLGTMPQILALVQPNT-P--------------------------------------------TTFLR 131 (363)
Q Consensus 97 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~--------------------------------------------~~~~~ 131 (363)
..-++.+.+...++.|.++.|...+..+- + +....
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 99999999999999999998876654211 0 11111
Q ss_pred HHHHHHHHhhcCCCCCCC------------------------------------------------HHHH-HhHHHHHHH
Q psy10729 132 NIVWAISNLCRNKNPAPD------------------------------------------------FEKI-KICLPLLNQ 162 (363)
Q Consensus 132 ~~~~~L~~l~~~~~~~~~------------------------------------------------~~~~-~~~i~~l~~ 162 (363)
.+...+...+.++..+.. .... ..++..+..
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 122222222222110000 0000 113445555
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-----CChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-----EETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
-+.++|...+..+..+++|+++.++.. ..+++.|.+..+++++.. ++-+++..++.+|.|++-. ......+..
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~ 400 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAP 400 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccc
Confidence 566677888899999999999988866 567889999999999854 3456889999999999873 334457888
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHHHh-------------------cccch
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ--EGLDNLLEIALQ-------------------VGELN 296 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~l~~ll~~~~~-------------------~~~~~ 296 (363)
.|+.+.++..++...|.+...-..++.-+....+....++.+ +-+..+.++.+. .+...
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k 480 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK 480 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence 999999999999888877776666666554433222233332 344444444332 11112
Q ss_pred HHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 297 QMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 297 ~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
.....+-++||++.++......+-..+..|
T Consensus 481 dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 481 DVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 233456677888888877666655555544
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-11 Score=108.19 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=194.0
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+...+++++|..++.-+...|+.+|..+....+.........-.++.+...++++ +...+..++.++..+... +.+|.
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 5677888888888999999999999999865443222111112345666666654 367778889999999876 56888
Q ss_pred HHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhcc
Q psy10729 107 LLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISD 184 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~ 184 (363)
.+...++++.|.++|+... +.+++..++.|++-++...+ ........++++.++.+++. ...++.+-++.++.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 8888889999999998544 56899999999999998864 33333446899999999986 568899999999999996
Q ss_pred CC------hhhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhc-------CChh------------------
Q psy10729 185 GH------NDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIAT-------GNDH------------------ 230 (363)
Q Consensus 185 ~~------~~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~-------~~~~------------------ 230 (363)
.+ ......+++.|+++ +++.|+.. |+++... +..|..... .-++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred cccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 43 22345667777554 55555432 3332221 111111110 0111
Q ss_pred ------HHHHHHHc--CchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy10729 231 ------QTDCVIQA--GGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 231 ------~~~~l~~~--~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
+...+-+. .+++.|++++. +.++.+..-||.=++.++...|.- +..
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-------------------------r~i 391 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-------------------------KDV 391 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-------------------------HHH
Confidence 22233333 35667777774 446777777777777777654332 467
Q ss_pred HHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 302 VEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
+.+.|+-+.+.+|++|++++|+..|..+++++..+
T Consensus 392 ~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 392 VEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999987543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-11 Score=105.65 Aligned_cols=266 Identities=17% Similarity=0.223 Sum_probs=187.7
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
++..|+..+..+++.+... .......-..+.+...+.+ .+...+..|+.+|..+. ..+..|..+.+.++++.|..+|
T Consensus 117 i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL-~~~~~R~~f~~~~~v~~L~~~L 194 (429)
T cd00256 117 IVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL-RVDEYRFAFVLADGVPTLVKLL 194 (429)
T ss_pred HHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh-CCchHHHHHHHccCHHHHHHHH
Confidence 3567888888888765432 1111111244566666644 45778888999999998 4678999998999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC-----CHHH
Q psy10729 80 SSP--HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP-----DFEK 152 (363)
Q Consensus 80 ~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-----~~~~ 152 (363)
+.. +..++..++.|++-++.+.+ ........+.++.++++++....+++.+-++.++.|+........ ....
T Consensus 195 ~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~m 273 (429)
T cd00256 195 SNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQM 273 (429)
T ss_pred hhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 753 46889999999999997744 445666789999999999988788999999999999998642111 1112
Q ss_pred HH-hHHHHHHHhhcc--CChhhHHHHHHHH-------HHhccCCh-----------------------hhHHHHHhc--C
Q psy10729 153 IK-ICLPLLNQLIHT--TDVETLSDICWAL-------SYISDGHN-----------------------DKIQAVVDT--G 197 (363)
Q Consensus 153 ~~-~~i~~l~~ll~~--~~~~v~~~al~~L-------~~l~~~~~-----------------------~~~~~~~~~--g 197 (363)
.. ++.+.+..+... .|+++....-..- ..+++.+. ++...+-+. .
T Consensus 274 v~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ 353 (429)
T cd00256 274 VQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYE 353 (429)
T ss_pred HHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchH
Confidence 22 444444333333 5666544332211 12221111 111222222 2
Q ss_pred ChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 198 VVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 198 ~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..|+++|. +.++.+..-||.=++.+++..|..+..+-+.|+-..++.++.+++++|+.+|..++..+..+
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5788888884 56788999999999999999898888888889999999999999999999999999987643
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=100.94 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=150.4
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh-cCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+++.+.+++.++++.+|..|+++|+.+..... . ....++.|..+ ++++++.|+..++.+|++++...+..
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 467788888899999999999999999974321 1 12457778777 67888999999999999997443211
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
....++.+...+.+.+ ..++..++++|..+.. ...++.|+.+++++++.++..|+.+|+.+...+
T Consensus 126 ---~~~a~~~l~~~~~D~~-~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 126 ---SPKIVEQSQITAFDKS-TNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred ---chHHHHHHHHHhhCCC-HHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 1123445555666665 5899999999975532 347899999999999999999999999994333
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
+ .+.+.|+..+.++++.||..|+++|+.+-. + .+++.|++.+++++ ++..|+.+|+++
T Consensus 191 ~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 191 P---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred H---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 3 236789999999999999999999998632 1 56888999998765 677888888888
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
..
T Consensus 249 g~ 250 (280)
T PRK09687 249 GD 250 (280)
T ss_pred CC
Confidence 65
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-10 Score=95.24 Aligned_cols=188 Identities=18% Similarity=0.276 Sum_probs=159.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
.+.+.+-+..|+.-|..++ ++-++...+...|+...++.++++.+..+|+.|+|+++..+.++|..+..+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4456777889999999999 567788889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 118 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 118 ~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
+..+..+++..++..++.+++.+.++..+.............|...+++ .+..++..++..+.++..........+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999977778999999999999999987666655566668899999998 67788999999999999777655555555
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.+....+..+....+.++...++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5655666666677777888888888877765
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=110.27 Aligned_cols=265 Identities=15% Similarity=0.156 Sum_probs=206.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|+.|..-...+-+...+++-+ +|++++.|-|+-. |..|+..|+.+..-.+-.....+..|++|.++++|++
T Consensus 453 QLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQvH--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS 523 (1387)
T KOG1517|consen 453 QLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQVH--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS 523 (1387)
T ss_pred HHHHHHHHHHhccccCCChHh-------cchHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc
Confidence 777888877777766666544 5666666644323 4558888888886667777778888999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC-C-CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-N-TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+..+++-..+++...+..-++.++..+++.+|-.++++.|.+ . -+.+-+..++.+|+.++.+..-........+++..
T Consensus 524 ~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~i 603 (1387)
T KOG1517|consen 524 SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGI 603 (1387)
T ss_pred chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHH
Confidence 999999999999999987779999999999999999998885 2 23477888899999999886333344445677888
Q ss_pred HHHhhccC-ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC----ChhHHHH
Q psy10729 160 LNQLIHTT-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG----NDHQTDC 234 (363)
Q Consensus 160 l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~----~~~~~~~ 234 (363)
....|+++ .+-++..++-+|+.|-.+.+...-.-...++-+.|..+|+++-++||..|+++|+.+..+ .++....
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~ 683 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV 683 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 88888885 688999999999999988887655556678899999999999999999999999999875 3333222
Q ss_pred H------------HHcCch---HHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 235 V------------IQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 235 l------------~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+ ++.... -.++.+++.+++-++.+.+-+|..++.+...+..
T Consensus 684 ~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 684 VEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred hhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 2 222222 2677788899999999999999999987655543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=96.87 Aligned_cols=199 Identities=14% Similarity=0.156 Sum_probs=155.0
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.+.+-++.|+.+|+...++.+++.+..++.+.+..+ .........|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 456778999999997666799999999999988775 5566777889999999999999999999999999999977765
Q ss_pred hHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 189 KIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
. .. ++ ..++.+++.+.+. +..++..++++|.||+..++. . .++ .+.++.++.++..++..++..+.++|.|+
T Consensus 88 ~-~~-Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~-~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 Q-EQ-IK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-H-HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred H-HH-HH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-h-hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4 22 33 2477777765443 567999999999999874433 2 333 25799999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCccC
Q psy10729 267 TAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
+.+... ...+...+++..+..|++.. +.++...+..+.++.-..-..+
T Consensus 162 S~np~~--------------------------~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 162 SENPDM--------------------------TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCHHH--------------------------HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 876432 24555667788888876654 6777888877777764444333
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-09 Score=107.80 Aligned_cols=239 Identities=14% Similarity=0.119 Sum_probs=142.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.++.|.+.|.++++.++..|+..|..+.... ...+.+...|+++++.++..++..|..+...+
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------ 715 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------ 715 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------
Confidence 56677888888888888888888887774211 12356777778888888888888888764221
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
...++..|.+.+ ..++..++++|..+-. .+.+..++.++++.++..++.+|+.+.....
T Consensus 716 ------~~~l~~~L~D~d-~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 716 ------AALFAAALGDPD-HRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred ------HHHHHHHhcCCC-HHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 234455666665 4777777777776411 1234556677777777777777777754322
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
..++.|..+++++++.+|..|+.+|+.+-.. + .....+...+.++++.||..|+++|..+.
T Consensus 775 ---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 775 ---------PAGDAVRALTGDPDPLVRAAALAALAELGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred ---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 1255666677777777777777777766321 0 11233556666666667777777776654
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHH----cCcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy10729 268 AGNSRQIDHVIQEGLDNLLEIALQVG--ELNQMALLVEE----SGGLEKLEALQHHENETVYQKCYKIISM 332 (363)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~~~~~l~~----~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 332 (363)
... ... .|.....+.. -.......|.. ....+.|...+++++++|++.|..+|+.
T Consensus 836 ~~~--a~~--------~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 836 ADV--AVP--------ALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ccc--hHH--------HHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 221 111 1111111000 00001111111 1235567788899999999999999863
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-10 Score=96.34 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=147.3
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+..|..+...-+ ....++..|++.+++.++.+.+..+|..|+|+++.++..+|.....+++.|+++.|+..+.+.
T Consensus 101 e~ald~Le~lve~iD--nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 101 EDALDNLEELVEDID--NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHhhh--hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 345555666555544 348899999999999999999999999999999999999999999999999999999999855
Q ss_pred C-HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC-CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 83 H-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 83 ~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
+ ..++..|+++++.+.++.+.....+...+|...|..+++.. .+..+++.++..+.++..............++...+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 4 57889999999999999999999999999999999999963 457899999999999998764444444445556666
Q ss_pred HHhhccCChhhHHHHHHHHHHhcc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
..+....+.++.+.++.++..+..
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHH
Confidence 667777777777777776666553
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-09 Score=100.16 Aligned_cols=251 Identities=16% Similarity=0.198 Sum_probs=178.7
Q ss_pred CCHHHHHHhc----CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCC
Q psy10729 28 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDG 101 (363)
Q Consensus 28 g~l~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~ 101 (363)
..+|.++..+ +..+.+.-..++.+|..++...+......+. .++...+....+. ++.+|..|+.++..++...
T Consensus 202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 4455555554 5677777889999999999777665554432 5566666666654 4789999999999999775
Q ss_pred CchhHHHh--hcCChHHHHHhhCCCCc---------------HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 102 ARARDLLL--GLGTMPQILALVQPNTP---------------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 102 ~~~~~~~~--~~g~i~~L~~ll~~~~~---------------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
|...+... -...++.++..+..... ..-...+..++-.++.+-++. .....+++.+-.++
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAML 357 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHh
Confidence 54322222 23356666666642110 124556677777787766433 23356778888899
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHH
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 244 (363)
.+++..-|+.++.+|+.++.+..+.....+. .+++.++..|++++|.||..||.+++.++..-....+.-....+.+.|
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL 436 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence 9999999999999999999999876554332 568888889999999999999999999988654444555555688889
Q ss_pred HHhhcCC-hHhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy10729 245 KKLLSSS-RVNIVKEAAWTISNITAG-NSRQIDHVIQEGLD 283 (363)
Q Consensus 245 ~~~l~~~-~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~l~ 283 (363)
+..+.+. +++|+..|+.++-|+... .+..+...++..+.
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9998775 689999999999999875 44544544444444
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-09 Score=105.25 Aligned_cols=242 Identities=12% Similarity=0.093 Sum_probs=179.1
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
+...++.|++.|.++++.+|..|+..|+.+.. ...++.|...|+++++.++..++.+|..+....+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-- 685 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-- 685 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--
Confidence 34677899999999999999999999998762 25689999999999999999999999988533221
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
.+.+...|.+.+ ..++..++.+|..+.... ...+...|.++|+.++..++.+|+.+-.
T Consensus 686 --------~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 686 --------APALRDHLGSPD-PVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------hHHHHHHhcCCC-HHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 256677777765 589999998888764321 2346778999999999999999998621
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
.+.+..++.++++.||..++.+|+.+.... ...++.|..+++++++.+|..|+.+|.+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAE 801 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 234667899999999999999999885422 1236788899999999999999999999
Q ss_pred HhcCCH--HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH---cCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 266 ITAGNS--RQIDHVIQEGLDNLLEIALQVGELNQMALLVEE---SGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 266 l~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~---~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
+..... ..+...+++. ...++ ......+.. ...++.|..++.+++..||+.|.++|.++
T Consensus 802 ~g~~~~~~~~l~~aL~d~-d~~VR--------~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 802 LGCPPDDVAAATAALRAS-AWQVR--------QGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCcchhHHHHHHHhcCC-ChHHH--------HHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 865321 1111111100 00111 111222332 34568889999999999999999999986
|
|
| >KOG4500|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=93.62 Aligned_cols=249 Identities=12% Similarity=0.090 Sum_probs=189.4
Q ss_pred HHHHcCCHHHHHHhcCC-CC-------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHH
Q psy10729 23 ELIEAGVVPICVELLDD-EN-------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 94 (363)
Q Consensus 23 ~~~~~g~l~~L~~lL~~-~~-------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L 94 (363)
.+.+.|.+..+++++.. .+ -.....++....-+..+++..........++..+...+.+.+..+...+.-++
T Consensus 260 ~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~Lai 339 (604)
T KOG4500|consen 260 SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAI 339 (604)
T ss_pred ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45677888888888832 11 12334455555555545443333333334788888899999999999999999
Q ss_pred HHhhCCCCchhHHHhhcCChHHHHHhhCC----CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChh
Q psy10729 95 GNIAGDGARARDLLLGLGTMPQILALVQP----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170 (363)
Q Consensus 95 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~ 170 (363)
+|+++.++.+ ..+++.+.+..|+.++.. .++.+.+..++.+|+|+.--. +........|+.+.+...++...|.
T Consensus 340 gNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 340 GNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAILLQLKLASPP 417 (604)
T ss_pred HhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHHHHHHhcCCc
Confidence 9999987766 577789999999998863 234688899999999998765 3444455688999999999999999
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcCCChh-hHHHHHHHHHHhhcC--ChhHHHHHHHcCchHHHHH
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSEETT-ILTAALRTVGNIATG--NDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~~~~~-v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~ 246 (363)
+....+.+++-+..+.+.....+.+. ..+..++.+-++++.. +..++.+.+..+..+ ..+....+.+.|+++.++.
T Consensus 418 v~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vs 497 (604)
T KOG4500|consen 418 VTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVS 497 (604)
T ss_pred chHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHH
Confidence 99999999988877666444444333 5688889999888875 999999999999987 3445667778999999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
++...+..++.+|..++..+......+
T Consensus 498 m~t~~hi~mqnEalVal~~~~~~yl~~ 524 (604)
T KOG4500|consen 498 MFTKNHINMQNEALVALLSTESKYLIV 524 (604)
T ss_pred HHHHhhHHHhHHHHHHHHHHHHHhccc
Confidence 999999999999999999888754333
|
|
| >KOG2759|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-09 Score=92.60 Aligned_cols=280 Identities=15% Similarity=0.080 Sum_probs=192.6
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
....++.+|...+.-+...+.+++..++.........-...-....+...+++ .+......+++||..+... +++|-.
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 36678888888888888889999988875422211100000112334455554 5566777899999999987 567888
Q ss_pred HhhcCChHHHHHhh-CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccC
Q psy10729 108 LLGLGTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDG 185 (363)
Q Consensus 108 ~~~~g~i~~L~~ll-~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~ 185 (363)
+....++..++..+ ....+-+++...+.|++.|+.++ ...+.....+.++.+..++++ ...+|.+-++.++.|+...
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999988 44445689999999999999886 333444567889999999976 5788999999999999977
Q ss_pred Ch------hhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHH-------HHHhhcCChhH-------------------
Q psy10729 186 HN------DKIQAVVDTGVVPRLVELLDSE--ETTILTAALRT-------VGNIATGNDHQ------------------- 231 (363)
Q Consensus 186 ~~------~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~-------L~nl~~~~~~~------------------- 231 (363)
.+ .....++..++.+.+-.+.... |+++....-.. ...+++ .+++
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsS-FDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSS-FDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhCCcCCCccccccc
Confidence 74 3445667667555554444322 33333222111 111211 1112
Q ss_pred -----HHHHHHc--CchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy10729 232 -----TDCVIQA--GGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVE 303 (363)
Q Consensus 232 -----~~~l~~~--~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~ 303 (363)
...+-+. .+++.|+++++.. +|.+-.-|+.=++......|+- ...+.
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-------------------------k~vv~ 406 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-------------------------KAVVE 406 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-------------------------hHHHH
Confidence 2222222 4677788888665 4777777888888887765543 46899
Q ss_pred HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 304 ESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 304 ~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
..||-+.+.+|++|++++|+-.|..+++++..+
T Consensus 407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998654
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-10 Score=101.76 Aligned_cols=256 Identities=20% Similarity=0.201 Sum_probs=164.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHh----CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN----ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~----~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
.++|.|.++|.+++...++-|+.+|..+++++.+.-+.-.. .-.+|.++.+.+++++++|..|+.|+..+....+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 46889999999999999999999999999876655442111 13589999999999999999999999998754332
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
. -...-...+..+..+-.+.+ .++++++|.++..|..-. +..-..-..++++++...-++.|.++.-.||.....++
T Consensus 208 a-l~~~iD~Fle~lFalanD~~-~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 208 A-LYVHIDKFLEILFALANDED-PEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred H-HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 1 12222345555555554444 699999999999887654 22222223445555555555555545444443333333
Q ss_pred cCChh---------------------------------------------------------------------------
Q psy10729 184 DGHND--------------------------------------------------------------------------- 188 (363)
Q Consensus 184 ~~~~~--------------------------------------------------------------------------- 188 (363)
..+..
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 22100
Q ss_pred ----------------hHHHHHhcCCh----HHHHHhhcCCChhhHHHHHHHHHHhhcCChhH-HHHHHHcCchHHHHHh
Q psy10729 189 ----------------KIQAVVDTGVV----PRLVELLDSEETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKL 247 (363)
Q Consensus 189 ----------------~~~~~~~~g~l----~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~l~~L~~~ 247 (363)
-...+....++ |.+-+.|.+++..+|+.++.+++.++.+.-+. ...+- .++|.|+.+
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~ 442 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSL 442 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHH
Confidence 00011112233 44444455667789999999999998754322 22111 378889999
Q ss_pred hcCChHhHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHH
Q psy10729 248 LSSSRVNIVKEAAWTISNITAG-----NSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~~l~~ll~~ 288 (363)
|.++.+-||...||+|+..+.. ..++...++++.+..++..
T Consensus 443 L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 443 LDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred hccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc
Confidence 9999999999999999998763 2344455555555555543
|
|
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-09 Score=98.37 Aligned_cols=312 Identities=13% Similarity=0.124 Sum_probs=194.4
Q ss_pred hhHHHHHHH---HhhcCCCCC---cHHHHHHcCCHH--HHHHhcCCCChhHHHHHHHHHHHhcCCChHh----HHHH-Hh
Q psy10729 2 RMIATRSAR---KMLSKERHP---PIDELIEAGVVP--ICVELLDDENPNTQFEATWALTNIASGTSEQ----TMTV-IN 68 (363)
Q Consensus 2 q~~a~~~l~---~~l~~~~~~---~~~~~~~~g~l~--~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~----~~~i-~~ 68 (363)
|..|..+++ +++...+.- ....+.+.|+.+ .+.+++++++...+..++.++..+...+-.. ...+ .+
T Consensus 198 RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~d 277 (678)
T KOG1293|consen 198 RLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFD 277 (678)
T ss_pred HHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeecc
Confidence 456677777 555554422 224455667776 6777778999999999999999987554111 1111 11
Q ss_pred CC---ChHH-HHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC-----cHhHHHHH---HHH
Q psy10729 69 AN---AIPK-FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-----PTTFLRNI---VWA 136 (363)
Q Consensus 69 ~~---~i~~-l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~~~---~~~ 136 (363)
.| .+.. .+.++.+|-......++...+-+++.-...+....+...++.+.+++.... .++.+.-+ ...
T Consensus 278 mgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i 357 (678)
T KOG1293|consen 278 MGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLI 357 (678)
T ss_pred CchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhh
Confidence 11 1111 122233443333344444444444333445566667777777777765221 11211111 112
Q ss_pred HHHhhcCCCCCC-CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHH
Q psy10729 137 ISNLCRNKNPAP-DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215 (363)
Q Consensus 137 L~~l~~~~~~~~-~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~ 215 (363)
+...+....... ...........+....-..|.....++|-++.+++..-+....-+-..++...+++++..++..+..
T Consensus 358 ~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~ 437 (678)
T KOG1293|consen 358 LNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMG 437 (678)
T ss_pred hhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHH
Confidence 222222221000 0011111222222333346778888888888888755433222233456789999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccc
Q psy10729 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL 295 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 295 (363)
.++.++.|++.........++..|+++.+...+.+.++.++..+.|+|.++..+.++..+
T Consensus 438 ~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k-------------------- 497 (678)
T KOG1293|consen 438 ITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK-------------------- 497 (678)
T ss_pred HHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH--------------------
Confidence 999999999998777788899999999999999999999999999999999998665422
Q ss_pred hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 296 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 296 ~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
..+-.-=+-..+..+.+++..+|+++|..+++++..+.
T Consensus 498 ----~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 498 ----FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred ----HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 12222224456778889999999999999999988773
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=99.86 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=189.4
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+++.|+++|.+-+......+.+..-..=++...++.-++++.+++..|+.||..+..-..+....-+....+..-+.-++
T Consensus 190 vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk 269 (859)
T KOG1241|consen 190 VRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK 269 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36778888888887766444455555567777788889999999999999999999777777777777778888888889
Q ss_pred CCCHHHHHHHHHHHHHhhCCC---------------CchhHHHh---hcCChHHHHHhhCCC--C----cHhHHHHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDG---------------ARARDLLL---GLGTMPQILALVQPN--T----PTTFLRNIVWA 136 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~---------------~~~~~~~~---~~g~i~~L~~ll~~~--~----~~~~~~~~~~~ 136 (363)
+++++|.-+++...+++|... |..-..+. -.+.+|.|+++|... + +=..-..+..|
T Consensus 270 s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH
Confidence 999999999999999998321 10000111 135678888888631 1 11233444445
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
|.-++....+ .....++|++-+-++++|..-+..+.-+++.+..+++.....-+-.+++|.++.++.+++--++..
T Consensus 350 L~l~A~~~~D----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdT 425 (859)
T KOG1241|consen 350 LMLFAQCVGD----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDT 425 (859)
T ss_pred HHHHHHHhcc----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence 5554443221 234578888989999999999999999999999888765455455688999999999888889999
Q ss_pred HHHHHHHhhcCChhHHH-HHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 217 ALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~-~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+.|+++.++...++.+- ...-.+.++.++.-++ +.|.+..+++|++.+++.
T Consensus 426 aAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 99999999987664321 1111233444444443 357899999999999994
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-09 Score=101.83 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=180.2
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
++.+..++.|+++.-|..|+.+|+.++.+..+.....+ ..+++.++..++++++.||..|+.+++.++.+-...-+...
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 44455556899999999999999999988776666544 36788899999999999999999999999987655555666
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH-HHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP-LLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~-~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
..-.+|.|+..+.+..+..++.+++.++-|++..-....-.....+++. .+..+++++.+.+++.++.+|+..+.....
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 6788899999999887789999999999999876533222223445555 445566778899999999999999866554
Q ss_pred hHHHHHhcCChHHHHHhhcCCC-h---hhHHHHHHHHHHhhc--CChhHHHHHHHcCchHHHHHh---hcCChHhHHHHH
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEE-T---TILTAALRTVGNIAT--GNDHQTDCVIQAGGLQKMKKL---LSSSRVNIVKEA 259 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~-~---~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~---l~~~~~~v~~~a 259 (363)
.....++ .++|.|..+|.+.+ . .+|.....+++-+.. +.+... ...+ .++..+... ....+...+.+.
T Consensus 509 ~F~pY~d-~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~a~-eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 509 KFIPYFD-RLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL-PLAE-ELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred hhHhHHH-HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHH-HHHHHHHhhcccchhhccccHHHH
Confidence 3333332 34788888887665 2 355555555555443 222211 1111 233334443 223355677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q psy10729 260 AWTISNITAGNSRQIDHVIQEGLDNLLEIA 289 (363)
Q Consensus 260 ~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~ 289 (363)
..+.+++|..-.+....++...+..+++.+
T Consensus 586 ~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred HHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 778888988766777788887777777754
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-08 Score=96.28 Aligned_cols=252 Identities=14% Similarity=0.162 Sum_probs=192.8
Q ss_pred HHHHHHhcCCC-ChhHHHHHHHHHHH-hcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 30 VPICVELLDDE-NPNTQFEATWALTN-IASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 30 l~~L~~lL~~~-~~~i~~~a~~~L~~-l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
++.|+.-|..+ |+..|..|+.-|+. +...+++....+.-..++|.|+.+|+++ +.++.-.|+++|.+|+.--|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44555555443 77788888877776 4445666555555557899999999865 589999999999999988888778
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC-
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG- 185 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~- 185 (363)
.+++.+.||.|+.-|..-.-..+.+.++.+|..|++..+ ......|.+-..+..++--...+++.|+.+..|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999999877633336899999999999998762 3345577777788888777778999999999999943
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCC----hHhHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSS----RVNIVKE 258 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~----~~~v~~~ 258 (363)
.++....++ ..+|.|.++|+..+.+..+.+|-++..++. +.++..+.+..+|++....+++.-. +..+.-.
T Consensus 326 ~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 326 RSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred CCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 233334454 459999999999999999999999998876 5677788999999999999998654 3455666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10729 259 AAWTISNITAGNSRQIDHVIQEGLDNLL 286 (363)
Q Consensus 259 a~~~L~nl~~~~~~~~~~~~~~~l~~ll 286 (363)
.+..++-|+.+++-..+.+++..|...+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTL 431 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHH
Confidence 7888889998887777766664444333
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-09 Score=100.25 Aligned_cols=307 Identities=19% Similarity=0.164 Sum_probs=173.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|++|+.++.++.....+. +... .++.+.++|.++++.++..|+.++..+ ..+++....+ -...++.+.+++..
T Consensus 131 Rk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 131 RKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSD 203 (526)
T ss_dssp HHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccc
Confidence 556666666665543321 1122 566777777667777777777777777 1222221111 11334455555566
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
+++-.+..++.++..++...+..... ...++.+..++.+.+ ..+...++.++..+.... .....+++.+.
T Consensus 204 ~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~ 273 (526)
T PF01602_consen 204 PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPSP------ELLQKAINPLI 273 (526)
T ss_dssp CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSH------HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcch------HHHHhhHHHHH
Confidence 66767777777777776554332211 345566666666444 467777777777665543 25677888899
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.++.++++.++..++..+..++...+.. +. . ....+..+. ++++.++..++..|..++. +...+. +
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~----v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----I 340 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSNPPA----VF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----I 340 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHCHHH----HG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----H
T ss_pred HHhhcccchhehhHHHHHHHhhcccchh----hh-h-hhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----H
Confidence 9999888999999999999998666322 22 2 222333444 7788899999999999874 444544 4
Q ss_pred hHHHHHhh-cCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHcC-----cHHHH
Q psy10729 241 LQKMKKLL-SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG---ELNQMALLVEESG-----GLEKL 311 (363)
Q Consensus 241 l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~---~~~~~~~~l~~~~-----~~~~L 311 (363)
++.|.+.+ ..++++++..++..++.++...+......++ .+..++....... .....+..+.... .+..+
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~-~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L 419 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD-TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKL 419 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH-HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH-HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHH
Confidence 55577778 4457889999999999888642211111111 1111111100000 0011122222221 23444
Q ss_pred HHHh-cCCcHHHHHHHHHHHHhhcCCCcc
Q psy10729 312 EALQ-HHENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 312 ~~l~-~~~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
.++. +-.+++++..+.|++..|.+..++
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 4443 346677888888888887665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1222|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-08 Score=87.82 Aligned_cols=299 Identities=15% Similarity=0.144 Sum_probs=206.6
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
.|+.-|.++..... .--.+...+++..|++.|+.++.++.......|..++- -.+++..+.+.|.+..|.++....+
T Consensus 282 va~ylLlNlAed~~--~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 282 VAVYLLLNLAEDIS--VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHhhhhh--HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCC
Confidence 35566666655543 33678899999999999988889999999999999984 4678888889999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH-
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ- 162 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~- 162 (363)
++++...+..+.|++.++ ..|...+..|.+|.+..++.++... .-++..+..++.++ .........++++.+..
T Consensus 359 ~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred HHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999774 5678888899999999999876542 23444566666654 33344445677887765
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
++...+.++-...+..--|++.+..+ .+.+.+..++..|++.- +..++ .-...+.|++.+.......+++ .+
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRN-aQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yv 506 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRN-AQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YV 506 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhcccc-ceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HH
Confidence 45556777777777666777755443 35555655677776643 44454 2345567787765544444553 56
Q ss_pred HHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------HHHHHHHHHHHhcccchHHHHH
Q psy10729 242 QKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ-------------------EGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 242 ~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------------------~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
.-|..+++++ +...-.++..++.|+....... ..++. +.+-.++-.++..+.....+..
T Consensus 507 gdLa~i~~nd~~E~F~~EClGtlanL~v~dldw-~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L 585 (791)
T KOG1222|consen 507 GDLAGIAKNDNSESFGLECLGTLANLKVTDLDW-AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL 585 (791)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH-HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH
Confidence 6777777665 5667788999999998743222 11221 2222223333333444555667
Q ss_pred HHHcCcHHHHHHHhcCC
Q psy10729 302 VEESGGLEKLEALQHHE 318 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~ 318 (363)
+..++.++.+.+|+..+
T Consensus 586 la~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQAC 602 (791)
T ss_pred hCccccHHHHHHHHHhh
Confidence 78888899888886543
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=102.95 Aligned_cols=287 Identities=19% Similarity=0.188 Sum_probs=193.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+++.+.+-|.++++.++..|+++|++++ +++... .+++.+.+++.++++.||+.|+.++..+...+|.. +
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~ 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---V 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---H
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---H
Confidence 5667777788899999999999999998 344444 34788889999999999999999999998765553 2
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
... .++.+..++.+.+ ..++..++.++..+ ...+.... ......++.+..++...+|-.+..+++++..++...+.
T Consensus 150 ~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 222 5888999997666 58899999999988 22211000 23455666667777789999999999999999877665
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.... ..+++.+..++++.++.+..+++.++..+....+ .-..+++.|..++.++++.++..+..+|..++.
T Consensus 226 ~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 226 DADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred hhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence 4311 3458888899998899999999999998865333 223577889999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHcC---cHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCccC
Q psy10729 269 GNSRQIDHVIQEGLDNLLEIALQ----VGELNQMALLVEESG---GLEKLEALQ-HHENETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~----~~~~~~~~~~l~~~~---~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
..+..+. -..-.+..+ ..... ....+-......+.+ .++.|..+. ..+++++++.+...+..+....+.+
T Consensus 297 ~~~~~v~-~~~~~~~~l-~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 297 SNPPAVF-NQSLILFFL-LYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HCHHHHG-THHHHHHHH-HCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred ccchhhh-hhhhhhhee-cCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch
Confidence 7643332 000000000 00000 000000011111111 455566666 5657888888888887766555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-07 Score=89.64 Aligned_cols=227 Identities=11% Similarity=0.095 Sum_probs=158.3
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+++.|.+-+.++++.+|..|+++|+++-. +.... -+++.+.+.+.++++-||+.|+.++..+...+|+ .+
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv 175 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF 175 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc
Confidence 35666666777888888888888887763 33322 3356677888899999999999999999876663 44
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
...+.++.|.+++.+.+ ..++.+++.+|..+.... +. ......+.+..+...+..-++..+...+.+|....-.++.
T Consensus 176 ~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~-~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~ 252 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYG-SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE 252 (746)
T ss_pred cccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhC-ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH
Confidence 55678888999888766 489999999999998654 22 2334456666677777666777777777777554322222
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.. ..++..+...|++.++.|...|++++.++.... +...+.+.. .+.+.++.+ .+++++++..+...|.-++
T Consensus 253 e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 253 SA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 11 245788888999999999999999999997642 333332221 233556666 4567789988888887777
Q ss_pred cCCHHHHH
Q psy10729 268 AGNSRQID 275 (363)
Q Consensus 268 ~~~~~~~~ 275 (363)
...+....
T Consensus 326 ~~~P~lf~ 333 (746)
T PTZ00429 326 VIFPNLLR 333 (746)
T ss_pred HHCHHHHH
Confidence 66554433
|
|
| >KOG2759|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=88.20 Aligned_cols=258 Identities=15% Similarity=0.183 Sum_probs=181.9
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHH----HHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVP----ICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~----~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
+...+.++.+.+... ++.+-.. .+...+ ++.+.+...-|++||-.+. .-++.|..+...+++..++..+
T Consensus 134 ~~~Ils~la~~g~~~-----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll-~~~eyR~~~v~adg~~~l~~~l 207 (442)
T KOG2759|consen 134 SFRILSKLACFGNCK-----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLL-RVDEYRYAFVIADGVSLLIRIL 207 (442)
T ss_pred HHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh-cCcchhheeeecCcchhhHHHH
Confidence 455566665555422 1112223 333444 3477888889999999999 4588999999999999999988
Q ss_pred CC--CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH-----HH
Q psy10729 80 SS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-----EK 152 (363)
Q Consensus 80 ~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~-----~~ 152 (363)
.+ .+-.++.+.+.|++-|..+ |...+.+...+.|+.|..+++....+.+.+-++.++.|++...+..... ..
T Consensus 208 ~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m 286 (442)
T KOG2759|consen 208 ASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM 286 (442)
T ss_pred hccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 43 3467899999999999876 4455677788999999999998888899999999999999876322111 11
Q ss_pred HHhHHHHHHHhhcc---CChhhHHHHHHHHH-------HhccCCh-----------------------hhHHHHHhc--C
Q psy10729 153 IKICLPLLNQLIHT---TDVETLSDICWALS-------YISDGHN-----------------------DKIQAVVDT--G 197 (363)
Q Consensus 153 ~~~~i~~l~~ll~~---~~~~v~~~al~~L~-------~l~~~~~-----------------------~~~~~~~~~--g 197 (363)
...-++..++.|.. +|+++....-..-. .++..+. ++...+-+. .
T Consensus 287 v~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennye 366 (442)
T KOG2759|consen 287 VLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYE 366 (442)
T ss_pred HhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHH
Confidence 12223444444433 56655444332222 2221111 111222221 3
Q ss_pred ChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 198 VVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 198 ~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..|+.+|+.. +|.+...||.-++..+++.|+....+.+.|+-..+++++++++++|+.+|..|+..+..+
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 678888888765 588999999999999999999999999999999999999999999999999998877643
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.8e-09 Score=91.08 Aligned_cols=232 Identities=16% Similarity=0.176 Sum_probs=159.1
Q ss_pred ChHHHHHhcC--CCCHHHHHHHHHHHHHhhCCCCchhHHHhh------cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 71 AIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 71 ~i~~l~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
....++.+++ ++++++....+..+..+..+++...+.+.. .....++++++..++ ..+...++..+..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 3555566665 367899999999999999888876666654 226788888887775 5899999999999998
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhc----cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-----cC--CCh
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-----DS--EET 211 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-----~~--~~~ 211 (363)
..+.... ....+.++.+...+. +++.+++..++.++.++...... ...+.+.++++.+.+++ .+ .+.
T Consensus 135 ~~~~~~~-~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~-R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSE-KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY-RQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--H-HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH-HHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCcccc-chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh-HHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 7643332 222455565555554 45667889999999999966664 47778899999999999 22 244
Q ss_pred hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q psy10729 212 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 212 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~ 290 (363)
.+..+++.+++-++- ++...+.+.+.+.++.|.++++.. ..++-+-+..++.|++....+.
T Consensus 213 Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------------- 274 (312)
T PF03224_consen 213 QLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------------- 274 (312)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-----------------
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-----------------
Confidence 689999999999876 677777888889999999999764 6789999999999999875431
Q ss_pred hcccchHHHHHHHHcCcHHHHHHHhcC--CcHHHHHHHHHHH
Q psy10729 291 QVGELNQMALLVEESGGLEKLEALQHH--ENETVYQKCYKII 330 (363)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~~a~~~l 330 (363)
+...|..+|+++.+..|... .++|+.+--..+-
T Consensus 275 -------~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 275 -------NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp -------HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred -------HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 23566777777777777543 4677766554443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3678|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.2e-08 Score=85.21 Aligned_cols=265 Identities=15% Similarity=0.173 Sum_probs=184.8
Q ss_pred hHHHHHhCCChHHHHHhcCCCCH--HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 62 QTMTVINANAIPKFLQLLSSPHL--NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 62 ~~~~i~~~~~i~~l~~ll~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
..+.+...|++..|++++..++. .++..|...|-.+.. .+.++.+...| +..++.+-+...+.+..+..+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 45677788999999999998874 568899999988864 34677777666 77777777766667899999999999
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 218 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~ 218 (363)
+..+++....-....+++..++.-....+|.+...+..+|+|++-+ .......+++..+-+-|..+-.+.+.-+|..||
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999866555566678888888888889999999999999999843 344456678888777777787888888999999
Q ss_pred HHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc-CCHHHHHHHHH---------HHHHHHHHH
Q psy10729 219 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQ---------EGLDNLLEI 288 (363)
Q Consensus 219 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~---------~~l~~ll~~ 288 (363)
.++..++. +.+....+...|-+...-.++..-+|..-.. --...+. ..++..++++. ..+....-+
T Consensus 329 lAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~ 404 (832)
T KOG3678|consen 329 LAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLC 404 (832)
T ss_pred HHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHH
Confidence 99999987 5555555666665554444444433321111 0111122 23444444443 122221111
Q ss_pred HHhc-ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 289 ALQV-GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 289 ~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
++.. .....-...+.+.|+++.|.++.++++.--.+.|..+|..+
T Consensus 405 ~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 405 AEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 1111 11122245788999999999999999888888888888754
|
|
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=87.13 Aligned_cols=232 Identities=14% Similarity=0.102 Sum_probs=172.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
.+.+++..-.|..-..|.+.+.+..+..+++.|.+|.++.++...+ ++.+...+.+++.+..........+.+.+.++
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 4455666667888888888788888889999999999999998654 56776777778888766666678888899999
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC--CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAP--DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
.+++++.+.++..++.....++..+........ .......+++.+..++..+...+...-+....+++...+ ....+
T Consensus 99 ~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~-hq~Il 177 (678)
T KOG1293|consen 99 KLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKD-HQLIL 177 (678)
T ss_pred HHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccch-hhhee
Confidence 999999987767899999999999998763332 223335566666666664555555555666666666554 34667
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHH---HhhcCChhHHHHHH----HcCchH--HHHHhhcCChHhHHHHHHHHHH
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVG---NIATGNDHQTDCVI----QAGGLQ--KMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~---nl~~~~~~~~~~l~----~~~~l~--~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
.++|+.+.+.-++...+..+|..|+..++ ++..+++.....+. +.|+.+ ..-.+.+++++..+-.++.++.
T Consensus 178 ~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~ 257 (678)
T KOG1293|consen 178 CNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLV 257 (678)
T ss_pred ccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHH
Confidence 88898988888888878889999999999 88887776554443 456665 4566667777777777777777
Q ss_pred HHhcCC
Q psy10729 265 NITAGN 270 (363)
Q Consensus 265 nl~~~~ 270 (363)
++...+
T Consensus 258 ~~~~~s 263 (678)
T KOG1293|consen 258 PYLRKS 263 (678)
T ss_pred HHHhcc
Confidence 776543
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=89.74 Aligned_cols=228 Identities=14% Similarity=0.215 Sum_probs=155.8
Q ss_pred CCHHHHHHhc-CC-CChhHHHHHHHHHHHhcCCChHhHHHHHh------CCChHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 28 GVVPICVELL-DD-ENPNTQFEATWALTNIASGTSEQTMTVIN------ANAIPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 28 g~l~~L~~lL-~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~------~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+....++.+| .. +++++....+..+..+...++.....+.. ......+++++.++|..+...++..+..+..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4466777777 44 78999999999999998877766655543 2367889999999999999999999999997
Q ss_pred CCCchhHHHhhcCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-----c--cCCh
Q psy10729 100 DGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-----H--TTDV 169 (363)
Q Consensus 100 ~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-----~--~~~~ 169 (363)
..+..... ...+.++.+++.+.+. ++.+.+..++.+|.++...+ .........++++.+..++ . ..+.
T Consensus 135 ~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 76653322 1245667777777632 22466788999999999775 3333344478899999988 2 2456
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHh
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~ 247 (363)
.++..++.+++-++...+. ...+.+.++++.++++++.. .+++.+-++.++.|++...+. ....++..|+++.+-.+
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEI-AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHH-HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 7899999999999976654 57778888999999999654 667999999999999986554 67778887777776666
Q ss_pred hcCC--hHhHHHH
Q psy10729 248 LSSS--RVNIVKE 258 (363)
Q Consensus 248 l~~~--~~~v~~~ 258 (363)
...+ |+++...
T Consensus 292 ~~rk~~Dedl~ed 304 (312)
T PF03224_consen 292 SERKWSDEDLTED 304 (312)
T ss_dssp HSS--SSHHHHHH
T ss_pred hcCCCCCHHHHHH
Confidence 6443 6666553
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=81.67 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=145.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
++-+-++.+|+++.+-+|..|+.++..+....|+... ..+|.|..-|.++|+.|+..|+.+++.|++.+|...-.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 3445567777777788888888888887755444332 56788888888888888888888888888776643211
Q ss_pred H---------------------------------hhcCChHHHHHhhCCCCcHhHHHHHHHHHH--HhhcCCCCCCCHHH
Q psy10729 108 L---------------------------------LGLGTMPQILALVQPNTPTTFLRNIVWAIS--NLCRNKNPAPDFEK 152 (363)
Q Consensus 108 ~---------------------------------~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~--~l~~~~~~~~~~~~ 152 (363)
+ .....++++.+++.++.-..+...++.++. +++.+. ..+...
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~--~d~~as 296 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM--SDHSAS 296 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC--CCcHHH
Confidence 1 012244455555544433334433333332 222221 123334
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
..-++..|-.++.++|+.++.-++.+++.+...++...+.. -..++++|.+.++.+|..|+..+.-++. .++.
T Consensus 297 iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl 369 (877)
T KOG1059|consen 297 IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS--KKNL 369 (877)
T ss_pred HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh--hhhH
Confidence 45677778888889999999999999999998777543332 5688999999999999999999998875 3444
Q ss_pred HHHHHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCC
Q psy10729 233 DCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGN 270 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~ 270 (363)
..++ ..|+..+...+ ...+.+.+.-+..+|+.+
T Consensus 370 ~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 370 MEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 4333 34555553333 366777777777777654
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-08 Score=88.28 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=158.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
..+..+-.++++++|...+..|..+..-.++ .++. .++++.++...++.+++|.-.|+..+..++.. |.++..+
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L 293 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVL 293 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHH
Confidence 3344444788999999999999998854332 2222 27788889999999999999999999999976 4565555
Q ss_pred hh--cCChHHHHHhhCCCCc-Hh------------------------------------------------------HHH
Q psy10729 109 LG--LGTMPQILALVQPNTP-TT------------------------------------------------------FLR 131 (363)
Q Consensus 109 ~~--~g~i~~L~~ll~~~~~-~~------------------------------------------------------~~~ 131 (363)
.. ..++|.|++-+...+. .. +++
T Consensus 294 ~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRk 373 (885)
T KOG2023|consen 294 QPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRK 373 (885)
T ss_pred HHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhh
Confidence 32 4677877766653221 00 122
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhhcCC
Q psy10729 132 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDSE 209 (363)
Q Consensus 132 ~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--g~l~~l~~lL~~~ 209 (363)
..+.+|--|+.-- .......++|.+...|.+++-.+++.+..+++.++.+.-.. ++.+ .++|.++++|.+.
T Consensus 374 CSAAaLDVLanvf----~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l~~~L~DK 446 (885)
T KOG2023|consen 374 CSAAALDVLANVF----GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPFLLSLLDDK 446 (885)
T ss_pred ccHHHHHHHHHhh----HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHHHHHHhccC
Confidence 2222222222110 00223445677777777888899999999999999876432 2222 3588889999999
Q ss_pred ChhhHHHHHHHHHHhhcC--ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy10729 210 ETTILTAALRTVGNIATG--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLE 287 (363)
Q Consensus 210 ~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~ 287 (363)
.+-||.-+||+|+..+.- ++...+.+. .++..|++.+-+++.+|++.|+.++.-+-....+..-..++..+..+..
T Consensus 447 kplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~ 524 (885)
T KOG2023|consen 447 KPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF 524 (885)
T ss_pred ccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999999987641 111111111 2444566666678889999999999988765433333344444444433
|
|
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=82.33 Aligned_cols=272 Identities=18% Similarity=0.221 Sum_probs=201.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCCh------Hh----------H
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTS------EQ----------T 63 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~------~~----------~ 63 (363)
++.|+..|..+. + .+ +..+...++++|+..| +-.|+++...++.++.++..+.+ +. .
T Consensus 40 RR~A~rgLKa~s-r---kY-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ia 114 (970)
T KOG0946|consen 40 RRDAVRGLKAFS-R---KY-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIA 114 (970)
T ss_pred HHHHHHHHHHHH-H---HH-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHH
Confidence 345666665532 2 12 4556677899999999 45689999999999999886652 11 1
Q ss_pred HHH-HhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-chhHHHhhc-CChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 64 MTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RARDLLLGL-GTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 64 ~~i-~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
+.+ -..+.|..++..+...+-.||..++..+.++....| +.++.+... .+|..|+.+|.+.. +.++..++..|..+
T Consensus 115 e~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL 193 (970)
T KOG0946|consen 115 EQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSEL 193 (970)
T ss_pred HHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHH
Confidence 223 345789999999999899999999999999975544 466666654 58999999999776 57888888999999
Q ss_pred hcCCCCCCCHHHHHhHHHHHHHhhccC---C-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC---Ch--
Q psy10729 141 CRNKNPAPDFEKIKICLPLLNQLIHTT---D-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ET-- 211 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~ll~~~---~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~---~~-- 211 (363)
..+...-...+....++..|..++..+ | .-|...++..+.|+..++..+...+.+.+.+|++.++|.-. +.
T Consensus 194 ~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev 273 (970)
T KOG0946|consen 194 VKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEV 273 (970)
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCccc
Confidence 988754445556678888888888763 2 35789999999999988888878889999999999888532 21
Q ss_pred ------h--hHHHHHHHHHHhhc-CCh-----hHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 212 ------T--ILTAALRTVGNIAT-GND-----HQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 212 ------~--v~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+ -...++.++..++. +++ .+.+.+...+++..|..++-++ ..+++.++..+++++..++...-.
T Consensus 274 ~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~ 353 (970)
T KOG0946|consen 274 FGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQD 353 (970)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHH
Confidence 1 23456666666665 222 1234666778999999998765 678999999999999988766555
Q ss_pred HHHH
Q psy10729 276 HVIQ 279 (363)
Q Consensus 276 ~~~~ 279 (363)
.+.+
T Consensus 354 ~F~~ 357 (970)
T KOG0946|consen 354 EFAD 357 (970)
T ss_pred HHhh
Confidence 5554
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=90.01 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=188.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
++.|+.-|.++|.-+. ..+..-..-|+.|.++++|+++-.+++.--+++...|..-++.+...+++.++-..+++.|.+
T Consensus 487 RlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 4678888888888886 677777888999999999999999999999999999887789999999999999999999986
Q ss_pred -C--CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 82 -P--HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 82 -~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+ +++-+..|+++|+.++.+.+-.++...+.+.+...+..|.++...-++..++-||+.|-.+.+...-.........
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 3 2578889999999999988888888888899998899998753346778888899999888754443344466788
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccCC----hhhHHHH------------HhcCC---hHHHHHhhcCCChhhHHHHHH
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDGH----NDKIQAV------------VDTGV---VPRLVELLDSEETTILTAALR 219 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~~----~~~~~~~------------~~~g~---l~~l~~lL~~~~~~v~~~a~~ 219 (363)
.|..+|.++-++|+..|+.+|+.+..+. +++.... ++.-+ ...++.+++...+-++.+...
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 8999999999999999999999998652 3222111 11111 236777788889999999999
Q ss_pred HHHHhhcCChhHHHHHHHc
Q psy10729 220 TVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 220 ~L~nl~~~~~~~~~~l~~~ 238 (363)
+++..+.+.......+.-+
T Consensus 726 ~ls~~~~g~~~~~~~va~n 744 (1387)
T KOG1517|consen 726 ALSHFVVGYVSHLKVVAGN 744 (1387)
T ss_pred HHHHHHHhhHHHhHHHhhh
Confidence 9999988776665544443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-05 Score=77.15 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=161.7
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+.+-+++++.+++..++..+...+.+.+..+++... -.++.+.+-+.++++-+|..|+++++++-. +...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~--- 138 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL--- 138 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH---
Confidence 445556666788888888888888888865655432 347888888999999999999999999853 2332
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.-.++.+.+.+.+.+ .-+++.|+.++..+..... +.....++++.+..++.+.|+.+..+|+.+|..+....+.
T Consensus 139 --e~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 139 --EYTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred --HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 234566777787766 5999999999999987542 2334467888899999999999999999999999866543
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
... ...+.+..++..+.+.++..+...+.+|......++... ..++..+...+++.++.|...|+.++.++..
T Consensus 213 ~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 213 KIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred hhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 322 334557778888877777778877777765433222222 2456678888888899999999999999876
Q ss_pred C
Q psy10729 269 G 269 (363)
Q Consensus 269 ~ 269 (363)
.
T Consensus 286 ~ 286 (746)
T PTZ00429 286 R 286 (746)
T ss_pred c
Confidence 4
|
|
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-06 Score=79.83 Aligned_cols=276 Identities=14% Similarity=0.216 Sum_probs=203.1
Q ss_pred HHHHHHHHhhcCCC------CCc---------HHHHHH-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-hHhHHHH
Q psy10729 4 IATRSARKMLSKER------HPP---------IDELIE-AGVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTV 66 (363)
Q Consensus 4 ~a~~~l~~~l~~~~------~~~---------~~~~~~-~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i 66 (363)
.++.++..+.++++ ++. .+.++. .+-+..++..+..-|-.+|..++..|.++.... .+.++.+
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 35667777777764 221 133444 488888999998888899999999999987654 4455544
Q ss_pred Hh-CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhc
Q psy10729 67 IN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 67 ~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~ 142 (363)
+. .-+|..++.+|.+..+.+|..++..|..+..+++.+++.+.-.+++..|..++... +..-+...++..|.||..
T Consensus 162 l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 43 57899999999999999999999999999999999988888899999999999833 233578889999999999
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhcc---CChh--------h--HHHHHHHHHHhccCCh------hhHHHHHhcCChHHHH
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIHT---TDVE--------T--LSDICWALSYISDGHN------DKIQAVVDTGVVPRLV 203 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~~---~~~~--------v--~~~al~~L~~l~~~~~------~~~~~~~~~g~l~~l~ 203 (363)
+......+....+.+|.|..+|.- .|.+ + ...++.++..+..... .+...+.+.+++..|.
T Consensus 242 ~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc 321 (970)
T KOG0946|consen 242 NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC 321 (970)
T ss_pred hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH
Confidence 887777788888999999988764 2321 1 2345566666653221 1235677889999999
Q ss_pred HhhcCCC--hhhHHHHHHHHHHhhcCChhHHHHHHHc----------CchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCC
Q psy10729 204 ELLDSEE--TTILTAALRTVGNIATGNDHQTDCVIQA----------GGLQKMKKLLSSS-RVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 204 ~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~ 270 (363)
.++.++. .+++..++.+++++++++......+.+. .++-.++.+..+. .+..|-.+.+++..+...+
T Consensus 322 ~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 322 TILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 9998873 4699999999999999988777666642 1222344444444 5677777888888777765
Q ss_pred HHHHHHHHH
Q psy10729 271 SRQIDHVIQ 279 (363)
Q Consensus 271 ~~~~~~~~~ 279 (363)
..-...++.
T Consensus 402 ~~gq~~~l~ 410 (970)
T KOG0946|consen 402 DDGQRKFLK 410 (970)
T ss_pred hhhHHHHHH
Confidence 544455554
|
|
| >KOG2973|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-06 Score=69.16 Aligned_cols=268 Identities=18% Similarity=0.189 Sum_probs=160.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+..+++++.+.++.++..|+..+..++.. +.....-.+...++.+.+++...++ .+.|+.++.|++.+ +..|+.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 34578889999999999999999999865 2111111223567888999987766 77899999999976 66777777
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
.. .+..++..+.++.. ......+..|+|+++.++. +..+...+. ..
T Consensus 81 ~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~----------~~~ll~~~~------------------~~---- 126 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDE----------VAALLTNLT------------------EK---- 126 (353)
T ss_pred HH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchH----------HHHHHHhcc------------------cc----
Confidence 66 67777777766643 5677778889999887631 111111111 00
Q ss_pred HHHHHhcCChHHHHHhhcCCCh--hhHHHHHHHHHHhhcCChhHHHHHHHcCchH--HHHHhhcCChHhHHH-HHHHHHH
Q psy10729 190 IQAVVDTGVVPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQ--KMKKLLSSSRVNIVK-EAAWTIS 264 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~--~L~~~l~~~~~~v~~-~a~~~L~ 264 (363)
.+.|+......+..++.. .--...+.++.|+.+ .+..++.+.+...++ .+..+ .+.+..+|+ ..+.+|.
T Consensus 127 ----~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gvagtlk 200 (353)
T KOG2973|consen 127 ----KDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLK 200 (353)
T ss_pred ----cccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHH
Confidence 002333333333332211 122344455666655 333334444443222 22222 234445554 4677888
Q ss_pred HHhcCCHHHHHHHHH-------------------------------------------HHHHHHHHHHHhcccchHHHHH
Q psy10729 265 NITAGNSRQIDHVIQ-------------------------------------------EGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 265 nl~~~~~~~~~~~~~-------------------------------------------~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
|.|...+.+-.-+-+ .....++...-.+.....-+..
T Consensus 201 N~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~ 280 (353)
T KOG2973|consen 201 NCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREV 280 (353)
T ss_pred hhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHH
Confidence 888765443221111 1222233333333344566789
Q ss_pred HHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 302 VEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 302 l~~~~~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
++..|+.+.+..+- ..+++++++++..+.+.+.+.+++.+
T Consensus 281 lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~~G 321 (353)
T KOG2973|consen 281 LRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPEIG 321 (353)
T ss_pred HHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 99999999998884 45789999999999999888665444
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-06 Score=77.17 Aligned_cols=261 Identities=12% Similarity=0.042 Sum_probs=169.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
++.|+++|..-+-.-++.+..+--..-.++..++.-+.++.+++..|..||..+..-........++.-......+.+++
T Consensus 195 RLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks 274 (858)
T COG5215 195 RLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS 274 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666664333221111111122344555566688999999999999999997666666677777777778889999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHH----------------hhcCChHHHHHhhCCC--C----cHhHHHHHHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLL----------------LGLGTMPQILALVQPN--T----PTTFLRNIVWAISN 139 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~----------------~~~g~i~~L~~ll~~~--~----~~~~~~~~~~~L~~ 139 (363)
+++++..+++...+.+|...-+..-.. .....+|.|+++|... + +=..-..+..||--
T Consensus 275 ~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLql 354 (858)
T COG5215 275 QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQL 354 (858)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHH
Confidence 999999999999988884321111011 1234789999998631 1 11233334444444
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 219 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~ 219 (363)
.+....+ .....++..+-+-+.+++..=++.+.-+++.+..++......-+-..++|.+...+.++.-.++..++|
T Consensus 355 faq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAw 430 (858)
T COG5215 355 FAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAW 430 (858)
T ss_pred HHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHH
Confidence 4433211 234556777777788888888999999999999887654443344567888888888777789999999
Q ss_pred HHHHhhcCChhHHHHHHHcCchHHHHHhhc---CChHhHHHHHHHHHHHHhcC
Q psy10729 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 220 ~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~nl~~~ 269 (363)
+++.++.+-+. .+-..|-++..+.... .+.|.+..+++|...|++.+
T Consensus 431 c~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 431 CFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 99999754322 1111233333333221 23567888999999999976
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=88.77 Aligned_cols=286 Identities=12% Similarity=0.131 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc
Q psy10729 47 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 126 (363)
Q Consensus 47 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 126 (363)
.++.+|..++..-...|..+.+..+.+.|+++|.+|+..+..-+...++|+...-...+..+.+.|+++.+++++.+.++
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34445555554445667777888899999999999888788888889999986667788999999999999999987764
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHH-HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh---hHHHHHhcC----C
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDICWALSYISDGHND---KIQAVVDTG----V 198 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~g----~ 198 (363)
.++.+..|.++.+..+......+.. ..-.+..++.+.++++-.++..++..+.|++.+... ....+++.. .
T Consensus 488 -aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 -ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred -hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 8999999999999887654443332 244577888999999999999999999999874432 112222221 3
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCC-----------hHhHHHHHHHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSS-----------RVNIVKEAAWTISNI 266 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~-----------~~~v~~~a~~~L~nl 266 (363)
...+++.+...+|-.....|+.|.+++..++.....+.+ ...+..+..++... +..+-.--..+..++
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 456666677778877788899999999877766554443 34555555544211 111111122223333
Q ss_pred hcCCHHHHHHHHH--------------------HHHHHHHHHHHhccc------chHHHHHHHHcCcHHHHHHHhcCCcH
Q psy10729 267 TAGNSRQIDHVIQ--------------------EGLDNLLEIALQVGE------LNQMALLVEESGGLEKLEALQHHENE 320 (363)
Q Consensus 267 ~~~~~~~~~~~~~--------------------~~l~~ll~~~~~~~~------~~~~~~~l~~~~~~~~L~~l~~~~~~ 320 (363)
..++....+.+.. .|+--+.....+..+ ..+-+..+.+.|..+.++.++.+.++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 3221111111110 000000000000111 12446688888999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10729 321 TVYQKCYKIISMA 333 (363)
Q Consensus 321 ~v~~~a~~~l~~~ 333 (363)
.|++++..+|...
T Consensus 727 ~vrek~~taL~~l 739 (743)
T COG5369 727 IVREKIGTALENL 739 (743)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
|
|
| >KOG3678|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=77.30 Aligned_cols=242 Identities=19% Similarity=0.197 Sum_probs=164.0
Q ss_pred HHHHHHcCCHHHHHHhcCCCCh--hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHh
Q psy10729 21 IDELIEAGVVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNI 97 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl 97 (363)
.+.+...|+++.|++++.+++- .++.+|.+.|..+.. .++++.+...| +..++.+-+ ...++..+..+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4667778999999999987765 469999999999884 47788888776 566666655 34578899999999999
Q ss_pred hCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC-HHHHHhHHHHHHHhhccCChhhHHHHH
Q psy10729 98 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDIC 176 (363)
Q Consensus 98 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~v~~~al 176 (363)
..++.+..+.++..|+++.++--++..+ ..+.+.++-+|.|++.+.....+ ......+-.-|..+-.+.|.-++..||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999888888999999999988888776 48999999999999887533221 122233444455555667777888999
Q ss_pred HHHHHhccCChhhHHHHHhcC-------------------------------ChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 177 WALSYISDGHNDKIQAVVDTG-------------------------------VVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 177 ~~L~~l~~~~~~~~~~~~~~g-------------------------------~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
.++.-++...+.. ..+.+.| .++.|+.+|.+...+.+.-+++-+..=+
T Consensus 329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EA 407 (832)
T KOG3678|consen 329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEA 407 (832)
T ss_pred HHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHH
Confidence 9998888665422 1122222 3556666665444333333333332211
Q ss_pred c--CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 226 T--GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 226 ~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
. ......+.+-+-|.+..|..+..+++.--.+.|..+|.-+.
T Consensus 408 aIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 408 AIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 1 11223344555688999998888776544455555555443
|
|
| >KOG4646|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=66.76 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=104.7
Q ss_pred HhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 154 KICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 154 ~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
.+.+..|+.-.+ ..+.+.++....-|.|++.++.++ ..+.+.+++..++..|..++..+...++..|+|+|. .+...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny-s~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY-SHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH-HHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHH
Confidence 455566665444 478889999999999999877765 788999999999999999999999999999999998 56677
Q ss_pred HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+.+.+.+++|.++..+.++...+...|+.++..++.++......++.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 89999999999999999999999999999999999886655444444
|
|
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=75.09 Aligned_cols=293 Identities=13% Similarity=0.158 Sum_probs=165.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHH--------h--CC----ChHHHHHhcCCCC------HHHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI--------N--AN----AIPKFLQLLSSPH------LNLA 87 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~--------~--~~----~i~~l~~ll~~~~------~~v~ 87 (363)
.+.|-+.++++..++-++..|+.|...+....|+....++ + .| ++..+.++++... .++.
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5678888888889999999999999988877776554332 1 22 3555566665322 2455
Q ss_pred HHHHHHHHHhhCC--CCch-----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC--HHHHHhHHH
Q psy10729 88 EQATWALGNIAGD--GARA-----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLP 158 (363)
Q Consensus 88 ~~a~~~L~nl~~~--~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~--~~~~~~~i~ 158 (363)
...+..|.++... .|+. -+.+.+..++ .++++|...+ ...-....-.|..++..-+.... -....+.+.
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL-rlLriLGq~d-~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL-RLLRILGQND-ADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH-HHHHHhcCCC-ccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 6677777777632 1211 1122211111 1234454444 35555566677777765433322 123344444
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc--------------CChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--------------GVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--------------g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
.+..+. +++.++.-|+.+|+.+..+.+.+++.+-=. .-=..++++|+++|..+++.|+..+..|
T Consensus 300 TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 300 TIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 443332 345566666666666665555433321100 1124677788999999999999999888
Q ss_pred hcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHH------HHHHHH--------HHHHHHHHHH
Q psy10729 225 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ------IDHVIQ--------EGLDNLLEIA 289 (363)
Q Consensus 225 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~------~~~~~~--------~~l~~ll~~~ 289 (363)
+. ..+.+.+++ .|+..|...+++.+...+.-+..++.. .+.. +-+++. +...++++..
T Consensus 378 vn--~~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 378 VN--ESNVRVMVK-----ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred hc--cccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 74 455555554 488888888999999988888888864 2221 112222 4455555544
Q ss_pred Hhc-ccchHHH-HHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 290 LQV-GELNQMA-LLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 290 ~~~-~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
... .....+. ..+...-.... ++.-..+.+.+.|.|+|-.|-
T Consensus 451 a~~~~e~~~y~~~rLy~a~~~~~---~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 451 ANAFQELHEYAVLRLYLALSEDT---LLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred hcCCcchhhHHHHHHHHHHhhhh---hhhhhhhhHHHHHHHHhhhhh
Confidence 332 1111111 11111100111 233455667888999998875
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-05 Score=71.90 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=165.5
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
.+..+++-++.+.+.+|.....||..+........ ...+.+.+.+++......-+..+.+.++.+..+.. ...+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 45667777788888999888888877653321111 11346677888887777788889999999987643 4677
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.+.+++..+.....+..+..-++.+..+....+.+-.+ ........++|.+.....+..+.++..+..+...+...-+.
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 78899999999998666433333344444444433322 22234456677777777778889998888877777644433
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+.- ..++|.++.-+.......+..++..++.++.+.+.+....+ ..++|.+.+.|.+..+++++.+..++.+++.
T Consensus 250 ~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 250 YAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred chh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 211 12356666666555778899999999999887777664444 5799999999999999999999999999997
Q ss_pred C-CHHHHHHHHH
Q psy10729 269 G-NSRQIDHVIQ 279 (363)
Q Consensus 269 ~-~~~~~~~~~~ 279 (363)
. ....++.++.
T Consensus 325 vidN~dI~~~ip 336 (569)
T KOG1242|consen 325 VIDNPDIQKIIP 336 (569)
T ss_pred hhccHHHHHHHH
Confidence 4 3333555554
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=79.07 Aligned_cols=244 Identities=12% Similarity=0.177 Sum_probs=178.4
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG 101 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~ 101 (363)
.-+.+..+.+.|+++|+.++-.+..-+...++|..-.-+..+..++..|++..++.++.+.+..++....|++..+..+.
T Consensus 425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 44566688899999998888888888899999988777889999999999999999999989999999999999998665
Q ss_pred Cch-hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC---CCCH----HHHHhHHHHHHHhhccCChhhHH
Q psy10729 102 ARA-RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP---APDF----EKIKICLPLLNQLIHTTDVETLS 173 (363)
Q Consensus 102 ~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~---~~~~----~~~~~~i~~l~~ll~~~~~~v~~ 173 (363)
.+. +-.+...-+...++.+..++. -.++..+...|.|+.-+... ..++ ....-+...+...+...+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 443 334556778888899888776 58999999999999874322 1111 11223567777888888887777
Q ss_pred HHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhc---------------------------------------------
Q psy10729 174 DICWALSYISDGHNDKIQAVVDT-GVVPRLVELLD--------------------------------------------- 207 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~--------------------------------------------- 207 (363)
..+..|.+++..++.....+.+. ..+..+.+.|.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~ 663 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL 663 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence 77888888876665443333322 22222222210
Q ss_pred --------CCChhhHHHHHHHHHHhhcC---Ch------hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 208 --------SEETTILTAALRTVGNIATG---ND------HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 208 --------~~~~~v~~~a~~~L~nl~~~---~~------~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
.++.+...+..|.+.|+.-. .. +.++.+.+.|+-+.+..+..+.++.|++.+-.+|.++
T Consensus 664 D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 664 DNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred cccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 01234566777777776431 11 4667778889999999999999999999999999876
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-05 Score=72.94 Aligned_cols=300 Identities=11% Similarity=0.119 Sum_probs=180.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHH--HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC--Cchh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTM--TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG--ARAR 105 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~--~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~--~~~~ 105 (363)
+...+..|++..++++.+|+..++.++.--..+.+ .+...| -.|...|....+++.-..+.++..+..-. ....
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 34455666888899999999998888732111111 122222 24667777777887766666655554211 1111
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
..+ .+++|.|..+|++.. +.++.++...+..++..............+---|+++|...+.+++.++..++++++..
T Consensus 879 pPi--~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCh--hhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 122 678999999999887 69999999999999987754444333334444467788889999999999999998843
Q ss_pred --ChhhHHHHH----------------------hc-C---ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 186 --HNDKIQAVV----------------------DT-G---VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 186 --~~~~~~~~~----------------------~~-g---~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
+.+-...++ +. | ++|.|+.=-..++..|+.-.+++|+.+-..-.+..+..+
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi- 1034 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI- 1034 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-
Confidence 221111111 11 1 334443333445666888888888877652222211111
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHcCc
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN-----SRQIDHVIQEGLDNLLEIALQV-----GELNQMALLVEESGG 307 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~l~~ll~~~~~~-----~~~~~~~~~l~~~~~ 307 (363)
..+.|.|-+.|.+.+.--+..|+.++.+++.+. .+....++.-...+++...-.+ .+.+.++..+.-.-.
T Consensus 1035 yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~ 1114 (1172)
T KOG0213|consen 1035 YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAM 1114 (1172)
T ss_pred HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHH
Confidence 246777888888888878888999999998762 2222222222222222211111 112233334433334
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 308 LEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 308 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
+.++.+=+.||...||+..-.++...+-
T Consensus 1115 ~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1115 LKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence 5556666789999999987776665443
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-05 Score=74.36 Aligned_cols=239 Identities=18% Similarity=0.225 Sum_probs=154.8
Q ss_pred cCCHHHHHH----hcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 27 AGVVPICVE----LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 27 ~g~l~~L~~----lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
..++|.++. -++++|+.-+..|+.+++.+..+-...+..-+..+++|.++.++.++..-+++.+.|+++.++...+
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 344444444 4478999999999999999997766666666667999999999998888899999999999997766
Q ss_pred chhHH-HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-----C-C--CCHHHHHhHHHHHHHhhcc---CChh
Q psy10729 103 RARDL-LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-----P-A--PDFEKIKICLPLLNQLIHT---TDVE 170 (363)
Q Consensus 103 ~~~~~-~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-----~-~--~~~~~~~~~i~~l~~ll~~---~~~~ 170 (363)
+.... ....+.++.++.-|.+. +.+..++||++.+|+..-. + . +.......++..|+..-+. .+..
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 43221 12234455555555544 4789999999999984221 1 0 0111112233333333333 3457
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH----hhc-----CCC----hhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE----LLD-----SEE----TTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~----lL~-----~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
+|..+..+|+.+....+.....++. +....+.. .++ ..+ .+++..-|.+|..+.+.....+..+.+
T Consensus 517 LR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d 595 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD 595 (859)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Confidence 8999999999999877755444432 22222222 222 222 246777888888887754444444443
Q ss_pred cCchHHHHHhhcC-ChHhHHHHHHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSS-SRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 238 ~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~~~ 269 (363)
.++..++.++++ .+.-+.+.|..+++-++..
T Consensus 596 -~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 596 -QIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred -HHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 466778888887 4556777888888777754
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-05 Score=70.21 Aligned_cols=297 Identities=13% Similarity=0.142 Sum_probs=176.4
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh--HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC--CCch
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ--TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD--GARA 104 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~--~~~~ 104 (363)
++...+.+|.+..++++.+|+...+.++.--..+ ...+...| ..|..-+....+++.-..+.++..+..- -...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3456677778999999999999888876321111 12222223 2355666677788777666666666421 1112
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
+..+ .|++|.|..+|++.. ..+..+....+..+|..............+---|+.+|.+.+.+++.+|..+++.++.
T Consensus 683 qpPi--~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPI--SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCch--hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 2222 789999999999887 5899999999999999875444433334444457778888999999999999998874
Q ss_pred CC--hhhHHHHH----------------------hc-C---ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 185 GH--NDKIQAVV----------------------DT-G---VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 185 ~~--~~~~~~~~----------------------~~-g---~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
.- .+-...++ +. | ++|.++.=-..++..|+.-.+++++.+-..-.+.....+
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 32 21111111 11 1 233333323345556888888888877542222211111
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHcC
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-----RQIDHVIQEGLDNLLEIALQV-----GELNQMALLVEESG 306 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-----~~~~~~~~~~l~~ll~~~~~~-----~~~~~~~~~l~~~~ 306 (363)
..+.|.|-+.+.+.++--+..|+..+.+++.+.+ +..-.++.-...+|+.-.... .+.+.++..+.-.-
T Consensus 840 -y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~ 918 (975)
T COG5181 840 -YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGA 918 (975)
T ss_pred -HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 2466777888888888888889999999887622 222222222222222211110 11122333333333
Q ss_pred cHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 307 GLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 307 ~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
.+.++++=+.||+..||+.--..+.
T Consensus 919 ~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 919 MMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHh
Confidence 4556777788999999987544443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-07 Score=54.16 Aligned_cols=41 Identities=29% Similarity=0.644 Sum_probs=37.9
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++++++.+++.|++|.|++++++++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46778899999999999999999999999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.7e-05 Score=67.44 Aligned_cols=256 Identities=12% Similarity=0.043 Sum_probs=169.6
Q ss_pred HHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC-CcHhHH
Q psy10729 52 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFL 130 (363)
Q Consensus 52 L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~ 130 (363)
|..+-...+..+..+.-....+.+..++-+++.+++..+.+++..+..+.. .-+.+...++--.++.-|..+ ....=+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 333334445555544444455556655545559999999999999997744 445666667666666666633 334557
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC
Q psy10729 131 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE 210 (363)
Q Consensus 131 ~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~ 210 (363)
..|...++.+....+... ....+++..++.+.++.+...+..++.++..++-.++ +.+...|++..+.+.+.++.
T Consensus 86 ~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc
Confidence 788888888777642111 2357889999999999999999999999999998877 45678999999999998876
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCCh-------H--hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR-------V--NIVKEAAWTISNITAGNSRQIDHVIQEG 281 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~-------~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 281 (363)
.++....+.++..+.. ++..++.+...--++.++..+.+.+ . +.-..+..++..+....+.-
T Consensus 161 ~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-------- 231 (371)
T PF14664_consen 161 FSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-------- 231 (371)
T ss_pred HhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce--------
Confidence 6788888888888876 4554444444333455554443331 1 12233333444333322111
Q ss_pred HHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 282 LDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 282 l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
-- -...+..+++.|.+.+..|++++++....++-..+.-..
T Consensus 232 --------------l~--l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 232 --------------LY--LSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred --------------ee--eecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 00 011223578889999999999999999999888777654
|
|
| >KOG4646|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-06 Score=61.01 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=98.3
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+.+..|+.-. ...+.+.+++...-|.|++ -+|-+-..+.+.+++..++..+..+++.+++.++..|+|+|.+ +...+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 3455555555 5678889999999999999 5688888999999999999999999999999999999999987 56678
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
.+.+.+++|.++..+.++. +.+...++.++..|+....
T Consensus 94 ~I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCccc
Confidence 8999999999999998876 5778888888888887653
|
|
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00013 Score=69.16 Aligned_cols=224 Identities=16% Similarity=0.141 Sum_probs=125.9
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
+.+..=|++++.-+...|+.+|++++. ++... ...|-+-++++++++-+++.|+.|...+.+..|+..+.+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-- 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-- 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh--
Confidence 334444567788889999999999994 44433 667888999999999999999999999998877765444
Q ss_pred cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc----c-----------CChhhHHHH
Q psy10729 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----T-----------TDVETLSDI 175 (363)
Q Consensus 111 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----~-----------~~~~v~~~a 175 (363)
++....+|.+.+. .+....+..+..+|....... .....+++-++..|+ . +||-++..+
T Consensus 181 ---~~~~~~lL~ek~h-GVL~~~l~l~~e~c~~~~~~l--~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ---VIAFRKLLCEKHH-GVLIAGLHLITELCKISPDAL--SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ---hHHHHHHHhhcCC-ceeeeHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 4455555544332 344444444444554432111 111223333333332 1 355566666
Q ss_pred HHHHHHhccCChhhHHHHHh--------------cC--ChHHHHHhhc--CCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 176 CWALSYISDGHNDKIQAVVD--------------TG--VVPRLVELLD--SEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~--------------~g--~l~~l~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
++.|+-+-.++.+..+.|-+ .| ++-..+.-+. .+++.+|..|+.+|+....+.+.+.+.+.=
T Consensus 255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 66666666554433222210 00 1111111111 123445555555555555544433321110
Q ss_pred ----------cC----chHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 238 ----------AG----GLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 238 ----------~~----~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.. =-..++..++++|+.+++.|...+..+...
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 00 013477888999999999999888777653
|
|
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00019 Score=69.30 Aligned_cols=217 Identities=13% Similarity=0.167 Sum_probs=150.6
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 119 (363)
.+..++.-|+-.|+.+..+.+..- ..+.-..+++.+++++++++..|..+|++++.++-. ..+|.++.
T Consensus 831 s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~ 898 (1233)
T KOG1824|consen 831 SSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILE 898 (1233)
T ss_pred CchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHH
Confidence 456677788888888875432211 124455788899999999999999999999975432 24677777
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
....... =+.-.+..|..................++..|...........|.-...|||.++..+++. ++
T Consensus 899 qi~sqpk--~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Ll 968 (1233)
T KOG1824|consen 899 QIESQPK--RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LL 968 (1233)
T ss_pred HHhcchH--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HH
Confidence 7764431 1222222222222211111111222344455555555566778999999999999887753 37
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
|.|-..+.++.+..|..++.++--.....+...+.+.. ..+..++.++++++.+|++.|..++...+.+.+..++.++.
T Consensus 969 pkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllp 1047 (1233)
T KOG1824|consen 969 PKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLP 1047 (1233)
T ss_pred HHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHH
Confidence 99999999999999999988888776655555554443 46778999999999999999999999999998888877776
|
|
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.2e-05 Score=70.00 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=155.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
++++.+++=..++++.+|..|++.++.+--. .... .....+.+.+++.++.++..+..+..++-..++ +.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~ 155 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DL 155 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hh
Confidence 5666677766778888888888888777632 2222 346778899999999999999999999976643 57
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+...|.++.|-.++.+.+ ..+..+++.+|..+................+..++..+...+..-+...+.++.+....++
T Consensus 156 ~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred ccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 788999999999999666 4899999999999988763323333334455555555555555555555555555554443
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.... .++..+...|.+.++.+...+...+.++....+.....+. ...-++|+.++...+ +++.-|..-+.-+.
T Consensus 235 ~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 235 REAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred hhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 2222 3477888889999999999999999888765444333333 357777888887776 66665554444444
Q ss_pred cCCHH
Q psy10729 268 AGNSR 272 (363)
Q Consensus 268 ~~~~~ 272 (363)
...++
T Consensus 308 ~~~p~ 312 (734)
T KOG1061|consen 308 QKRPE 312 (734)
T ss_pred HhChH
Confidence 44444
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.5e-07 Score=52.26 Aligned_cols=41 Identities=41% Similarity=0.791 Sum_probs=38.2
Q ss_pred ChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 59 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 59 ~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+++.+..+++.|++|.|+.+|+++++++++.++|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0002 Score=69.09 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=131.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.-..+++.+++++.+++..|..+|++++.++.+ ..+|.++..+.+. +.=++..+..|..+......-...
T Consensus 857 e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~svd~~~ 927 (1233)
T KOG1824|consen 857 ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASVDGLK 927 (1233)
T ss_pred hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccchhh
Confidence 4455788888999999999999999999976532 4577777777654 333333444444443211110000
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
-....+...|.+-.+... +..+.-++.||+.|+..++ ...+|.|-..+.++.+..+..++.++.......+
T Consensus 928 ~~v~~IW~lL~k~cE~~e-egtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p 998 (1233)
T KOG1824|consen 928 PYVEKIWALLFKHCECAE-EGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP 998 (1233)
T ss_pred hhHHHHHHHHHHhcccch-hhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC
Confidence 001223334444444333 3567778899999988752 5678999999999999999999999988887776
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
.....+.+.. +..+..++++++.+||+.|+.++...+.+.+...+-+.
T Consensus 999 ~~id~~lk~~-ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen 999 QPIDPLLKQQ-IGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred CccCHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHH
Confidence 6556555433 78889999999999999999999988877777665333
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00037 Score=64.63 Aligned_cols=262 Identities=15% Similarity=0.116 Sum_probs=168.6
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc----------CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHH
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELL----------DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL 76 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL----------~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 76 (363)
.+|+- ++++. ...+.+....++..|.++- ...++.+...|++||+|+...++..|..+.+.|+.+.++
T Consensus 3 ~~LRi-LsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 3 ETLRI-LSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHH-HccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 34444 55554 3457777777788887776 345788999999999999999999999999999999999
Q ss_pred HhcCCC-----CHHHHHHHHHHHHHhhCCCCchhHHHhh-cCChHHHHHhhC---------CC-------CcHhHHHHHH
Q psy10729 77 QLLSSP-----HLNLAEQATWALGNIAGDGARARDLLLG-LGTMPQILALVQ---------PN-------TPTTFLRNIV 134 (363)
Q Consensus 77 ~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~---------~~-------~~~~~~~~~~ 134 (363)
..++.. +.++.-...+.+--++...+..+..+.+ .+++..+...+. .. .+.+....++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999865 5677777888877777666666666654 477777776553 11 1345677888
Q ss_pred HHHHHhhcCCCCCCC---HHHHHhHHHHHHHhhc---c--CChhhHHHHHHHHHHhccCChhh-------HH----HHHh
Q psy10729 135 WAISNLCRNKNPAPD---FEKIKICLPLLNQLIH---T--TDVETLSDICWALSYISDGHNDK-------IQ----AVVD 195 (363)
Q Consensus 135 ~~L~~l~~~~~~~~~---~~~~~~~i~~l~~ll~---~--~~~~v~~~al~~L~~l~~~~~~~-------~~----~~~~ 195 (363)
..+.|+..+...... ......+++.+..++. . +.......+..+|.|+--..... .. ....
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 899999877643322 2223344444554421 1 12346677777777773111100 00 0011
Q ss_pred cCChHHHHHhhcC-----C---ChhhHHHHHHHHHHhhcCChhHHHHHHH----------------cCchHHHHHhhcCC
Q psy10729 196 TGVVPRLVELLDS-----E---ETTILTAALRTVGNIATGNDHQTDCVIQ----------------AGGLQKMKKLLSSS 251 (363)
Q Consensus 196 ~g~l~~l~~lL~~-----~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------------~~~l~~L~~~l~~~ 251 (363)
...+..++.+|.. . -.+.....+.+|.+++..+...++.+.. ..+-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2345666666632 1 1245666777788887766554444332 23555688888877
Q ss_pred hHhHHHHHHHHHHHHhcCC
Q psy10729 252 RVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~ 270 (363)
.+.++..++..+..+|..+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 7888888888888887544
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=65.36 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=153.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCC-ChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCCCchhHHHh-hcCC
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINAN-AIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLL-GLGT 113 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~-~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~ 113 (363)
++-++-.+.-|++|+.++.. .++.|..+-..+ .-..++..+++. +..++...+.+++.+... +.+.+.+- ....
T Consensus 159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dl 236 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 45566678889999999994 577776554433 344566666643 367889999999999865 55543332 2446
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC---CHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCC--
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP---DFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGH-- 186 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~---~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~-- 186 (363)
+.-++.+.+....+.+.+-++.++.|++... ++. .......+.+..-.+.+. .|.+++...=++=..+-...
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~-pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKS-PKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 6777777777777889999999999999843 221 222223344444444433 45555443322222111110
Q ss_pred -------------------h---------hhHHHHHhc--CChHHHHHhhcCCChh-hHHHHHHHHHHhhcCChhHHHHH
Q psy10729 187 -------------------N---------DKIQAVVDT--GVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 187 -------------------~---------~~~~~~~~~--g~l~~l~~lL~~~~~~-v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+ .+...+.+. .++..|.++++..++. ....||.-+..+++..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 0 122233222 3678888888888776 67789999999999999999889
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
...|+-..+++++++++++|+.+|..++.-+.
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999998887654
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00072 Score=60.90 Aligned_cols=320 Identities=12% Similarity=0.061 Sum_probs=202.8
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--C
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--H 83 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~ 83 (363)
++.|..++++.. .....+.-....+.+...+-+++.+++..+.+++..+. .++.....+.+.++--.++..|..+ +
T Consensus 4 ~N~Lv~l~~~~p-~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 4 ANDLVDLLKRHP-TLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHHHHhCc-hhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 456677666654 12222333334444544444444999999999999998 4577778888888766677777643 4
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
..-|++|+..+..+....... .....|.+..++.+.+..++ .++..+..+|..++... ++.....|+++.+...
T Consensus 82 ~~ER~QALkliR~~l~~~~~~--~~~~~~vvralvaiae~~~D-~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGP--KEIPRGVVRALVAIAEHEDD-RLRRICLETLCELALLN---PELVAECGGIRVLLRA 155 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCc--ccCCHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHH
Confidence 566789999998887542221 12346788899999988764 89999999999998764 3556677888998888
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-------Ch--hhHHHHHHHHHHhhcCChhHHHH
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-------ET--TILTAALRTVGNIATGNDHQTDC 234 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-------~~--~v~~~a~~~L~nl~~~~~~~~~~ 234 (363)
+-.+..++....+.++-++...+..+ +.+...--++.++.-..+. +. +-...+..++..+.+.=+...-.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l 234 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL 234 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence 87766668889999999998777654 3332211234443333222 22 23445555666655533332211
Q ss_pred HHHc-CchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH-------HHH---HHHHHH-HHh---c-----c
Q psy10729 235 VIQA-GGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ-------EGL---DNLLEI-ALQ---V-----G 293 (363)
Q Consensus 235 l~~~-~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~-------~~l---~~ll~~-~~~---~-----~ 293 (363)
-.+. .++..|+..+..+.+++++...-.+..+..- .+........ .-. .++-.. .+. . .
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~ 314 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSK 314 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccc
Confidence 1122 5788899999999999999888888877653 2221111111 000 011100 000 0 0
Q ss_pred c-------chHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhc
Q psy10729 294 E-------LNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAF 334 (363)
Q Consensus 294 ~-------~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~ 334 (363)
. ..-....+.++|.++.|.++.... ++.+..+|.-+|..++
T Consensus 315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 315 RPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred cccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 0 012245889999999999997665 8999999999888764
|
|
| >KOG1789|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00069 Score=66.37 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=105.7
Q ss_pred HHHHHHHhhcCCCCCc---HHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 5 ATRSARKMLSKERHPP---IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~---~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
++.+|+++++...+-. -.+..--|..+.+..++ ...++.++..|+.++..+. .+.++...+...+.+..|+.+|.
T Consensus 1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHh
Confidence 5677888877654221 11122237888888888 5678899999999998888 57889999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
+. ++.++.++.+|..++.. ++......+.|++..+..++-..+..+.+..++..++.+..++
T Consensus 1824 S~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1824 SQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred cC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 64 78899999999999876 4555566678999999988876666688888888888876543
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00066 Score=62.09 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcC---CChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIAS---GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
..++-|...|.++.++++..+=.+|.++.. .+|... --...++.++.-++++++.++..|+.-+..+..-.+..
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 566778888888899998776665555432 122221 11367888999999999999988877777776543321
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHH---HHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHH
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRN---IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 181 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~---~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~ 181 (363)
-.....|++..++.++.+......... .-..+..++.......+ .....++..+...+.++..+.+..++.-+..
T Consensus 285 -~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 285 -LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred -hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 233346777777777775543222222 22234445544322222 3446788889999999999999999988888
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
+-...+.+ -......+++.+++-|++.+.+|...++..++++|...... .. -.++..|+++......-+...+..
T Consensus 363 l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~l 437 (675)
T KOG0212|consen 363 LYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNL 437 (675)
T ss_pred HHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhH
Confidence 87776654 33455678999999999999999999999999999854432 01 124445666666666666677777
Q ss_pred HHHHHhcC-CHHHHHHHH
Q psy10729 262 TISNITAG-NSRQIDHVI 278 (363)
Q Consensus 262 ~L~nl~~~-~~~~~~~~~ 278 (363)
.+..+|.- +++.+-+.+
T Consensus 438 IIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 438 IIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHHHHhCHHHHHHHH
Confidence 77777764 555554433
|
|
| >KOG2973|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00036 Score=59.13 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=140.4
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
..++.+.+++...++ -..|+.+|.|++ .++..++.+++. ++..++..+.++...+....+..|.|++++...+...
T Consensus 44 ~~lk~l~qL~~~~~~--~~~a~~alVnls-q~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 44 ALLKDLTQLLKDLDP--AEPAATALVNLS-QKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hhHHHHHHHccCccc--ccHHHHHHHHHH-hhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 457778888866555 567899999999 567788888877 8888888888888888899999999999887665444
Q ss_pred Hhh------cCChHHHHHhhCCCCc-HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH--HHHHHHhhccCChhhHH-HHHH
Q psy10729 108 LLG------LGTMPQILALVQPNTP-TTFLRNIVWAISNLCRNKNPAPDFEKIKIC--LPLLNQLIHTTDVETLS-DICW 177 (363)
Q Consensus 108 ~~~------~g~i~~L~~ll~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~--i~~l~~ll~~~~~~v~~-~al~ 177 (363)
... .|.+......+..+.+ ..-....+..+++|++..... ........ ...+.. +.+.+..+|+ ..++
T Consensus 120 l~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR-~l~~~~k~~p~~kll~-ft~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 120 LTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGR-KLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAG 197 (353)
T ss_pred HHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhh-hHhcchhhhhHhhhhc-ccccchhhhccchHH
Confidence 432 3344444444443322 133455667788888765322 11111111 112222 2235556654 5677
Q ss_pred HHHHhccCChhhHHHHHhc--CChHHHH---------------------Hhhc-----CCChhhHHHHHHHHHHhhcCCh
Q psy10729 178 ALSYISDGHNDKIQAVVDT--GVVPRLV---------------------ELLD-----SEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 178 ~L~~l~~~~~~~~~~~~~~--g~l~~l~---------------------~lL~-----~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
+|.|+|...... ..+++. .++|.++ +++. .+++.+|..-+.+|.-+|. ..
T Consensus 198 tlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~ 275 (353)
T KOG2973|consen 198 TLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TR 275 (353)
T ss_pred HHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hh
Confidence 888887665543 222221 2233322 2232 3567899999999999987 34
Q ss_pred hHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNI 266 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl 266 (363)
..++.+.+.|+.+.+-.+=+.. ++++++.+-....-+
T Consensus 276 ~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 276 AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4556777777666555544443 555555444433333
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-06 Score=59.01 Aligned_cols=87 Identities=26% Similarity=0.449 Sum_probs=71.5
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 30 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 30 l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
++.|++.| +++++.++..++++|+.+. ++ ..+|.|..+++++++.++..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899999 8999999999999999553 12 44899999999999999999999999883
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAIS 138 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~ 138 (363)
....++.|.+++.++++..++..+.++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 13378999999998776667888888774
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00033 Score=63.83 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=111.3
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+++.++..| ..++..++..++..+... ..+ ..+..++..|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 4677788888 567777877666655422 222 238889999999999999999999986632
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.+..+.|..++.+.+ ..++..++.++...- ....+.+..+|+++++.++..++++++.+-..
T Consensus 116 ----~~a~~~L~~~L~~~~-p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASE-PPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 223577788887766 477777776655521 12345788888999999999999999998632
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
..++.|...+.+.++.||..|+++++.+
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 2356677789999999999999999776
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0003 Score=66.31 Aligned_cols=153 Identities=20% Similarity=0.177 Sum_probs=105.6
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH--HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD--LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~--~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
++..+++.|+++.++++.+++..++.++.--..+.+ .+-..| -.|.+-|.... .++.-.++.++..+....+-..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeey-pEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCccc-HHHHHHHHHHHHHHHHhccccc
Confidence 456677888899999999999999999732222211 111112 22445555555 4787777777777765442222
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
...-..+++|.|...|++.+.+++.++...++.++...+++...=-=..+.-.|+++|.+.+.++|..|..+++-++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 233457899999999999999999999999999997776542110001234567788888889999999999998875
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=66.97 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=119.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCC--hHhHHHHHhC--CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCC
Q psy10729 38 DDENPNTQFEATWALTNIASGT--SEQTMTVINA--NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT 113 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 113 (363)
.+.+|+.+..|+.-|..+..++ ......+.+. .+++.+...+.+....+...|+.++..++..-...-+.. ....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 6789999999999999987655 2222222211 566778888887778899999999999984422211122 3557
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhH-HHHHHHhhccCChhhHHHHHHHHHHhccCCh---hh
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-LPLLNQLIHTTDVETLSDICWALSYISDGHN---DK 189 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~-i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~---~~ 189 (363)
+|.|+..+.+.. ..++..+..+|..++.... ....+ .+.+.....+.++.++..++..+..+....+ ..
T Consensus 96 l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDSK-KFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 888888888776 4788888999999998752 11233 6777888899999999999999999875554 21
Q ss_pred HHH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 190 IQA-VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 190 ~~~-~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
... ..-..+.+.+.+++.+++++||..|-.++..+....++..+.++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 111 00124678888999999999999999999999766555554444
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00024 Score=67.35 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=157.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh---HHHHHhCCChHHHHHhcCC-------CCHHHHHHHHHHHHHhh
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ---TMTVINANAIPKFLQLLSS-------PHLNLAEQATWALGNIA 98 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~---~~~i~~~~~i~~l~~ll~~-------~~~~v~~~a~~~L~nl~ 98 (363)
.+..-+++|+..++.-+..++..+.++...++.. +..+.+.-+.+.+-++|.+ +....+.-++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3556677888888778888999999998665532 3357777778899999986 33567888999999999
Q ss_pred CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHH
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~ 178 (363)
.. |+....-.-.+-||.+++++....+.++...+..+|..++..+ .........|.++.|.+.+.+ .+.....++.+
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 74 5443333335679999999987765689999999999999665 555566668999999998877 55567788888
Q ss_pred HHHhccCChhhHHH---HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH-----HHHHHHcCchHHHHHhhcC
Q psy10729 179 LSYISDGHNDKIQA---VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ-----TDCVIQAGGLQKMKKLLSS 250 (363)
Q Consensus 179 L~~l~~~~~~~~~~---~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~l~~~~~l~~L~~~l~~ 250 (363)
+.+++......... -.-..+++.+.+.........+-..|..|+.+....+.. ...-+-..+...+..++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 88877544311000 000134555666666556667888899998887755311 1111222344556666655
Q ss_pred C-hHhHHHHHHHHHHHHh
Q psy10729 251 S-RVNIVKEAAWTISNIT 267 (363)
Q Consensus 251 ~-~~~v~~~a~~~L~nl~ 267 (363)
. .+.-|..|......+.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 3444444444444443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00011 Score=62.33 Aligned_cols=221 Identities=11% Similarity=0.155 Sum_probs=147.3
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD--ENPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l~~ll 79 (363)
+-|+.++.++....+++.+... +..+-..++++++. .+.++|.+.+.++..++. ++.+.+.+-+. ..+.-++++.
T Consensus 167 lfav~cl~~l~~~~e~R~i~wa-entcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iV 244 (432)
T COG5231 167 LFAVSCLSNLEFDVEKRKIEWA-ENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIV 244 (432)
T ss_pred HHHHHHHhhhhhhHHHHHHHHH-HhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777666665554444 55677778888843 457899999999999984 56666433322 5566677777
Q ss_pred CCC-CHHHHHHHHHHHHHhhCCCCc--hhHHHhhcCChHHHHHhhC--CCCcHhHHHHHHHHHHHhhcC-----------
Q psy10729 80 SSP-HLNLAEQATWALGNIAGDGAR--ARDLLLGLGTMPQILALVQ--PNTPTTFLRNIVWAISNLCRN----------- 143 (363)
Q Consensus 80 ~~~-~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~----------- 143 (363)
+.. .+++.+.++.++.|++...|. ...... .|-+.+.++.|. ...+++++...-..-+.|-.+
T Consensus 245 k~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 245 KERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 643 468889999999999975443 223333 343444444443 333355554443322221111
Q ss_pred ----------CCCCC---------CH--HHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 144 ----------KNPAP---------DF--EKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 144 ----------~~~~~---------~~--~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
+++.. .. .....++..+..+++..++. ....||.-++.+.+..|+....+.+.|+-..
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~ 403 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEI 403 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHH
Confidence 00110 00 11245678888889887776 5678899999999888888888889999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 202 LVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
++.++++++++|+-+|+.++..+..
T Consensus 404 im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 404 IMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999987654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.7e-06 Score=51.68 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
+.+|..|+++|++++...+...+... ..+++.|+.++++++++|+..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999887777766644 46999999999999899999999999875
|
... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0018 Score=58.08 Aligned_cols=189 Identities=23% Similarity=0.345 Sum_probs=143.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
..++.+.+++.++++.++..|.+.++.+... ..++.+..++.+.++.++..++.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGD--P----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h-----
Confidence 4688899999888999999999997777632 568999999999999999999998888742 2
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCCh------------hhHHHH
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV------------ETLSDI 175 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~------------~v~~~a 175 (363)
..++.++.++..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 246888888885444689999999998876543 24555566655442 244445
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 255 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 255 (363)
...++.+-. ....+.+.+.+.+....+|..|..+|+.+...+ ..+.+.+...+.+.+..+
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 444444432 123678888999998899999999999987644 345677888899999999
Q ss_pred HHHHHHHHHHHhcC
Q psy10729 256 VKEAAWTISNITAG 269 (363)
Q Consensus 256 ~~~a~~~L~nl~~~ 269 (363)
+..++.+++.+-..
T Consensus 230 r~~~~~~l~~~~~~ 243 (335)
T COG1413 230 RKAALLALGEIGDE 243 (335)
T ss_pred HHHHHHHhcccCcc
Confidence 99999999887654
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.8e-05 Score=67.45 Aligned_cols=254 Identities=16% Similarity=0.134 Sum_probs=158.5
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHH-cCC--HHHHHHhc-CCCChhHHHHHHHHHHHhcCC------ChHhHHHHHhCCCh
Q psy10729 3 MIATRSARKMLSKERHPPIDELIE-AGV--VPICVELL-DDENPNTQFEATWALTNIASG------TSEQTMTVINANAI 72 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~-~g~--l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~------~~~~~~~i~~~~~i 72 (363)
.+++.++-.++.+.. | +.+++ ++. ..+..-.+ ..++..+|..|+.+|.+-... .+..|.+ +.
T Consensus 152 ~~sl~~~gy~ces~~-P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~m 223 (858)
T COG5215 152 CESLGICGYHCESEA-P--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FM 223 (858)
T ss_pred HHHHHHHHHHhhccC-H--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hh
Confidence 345556655544443 3 33333 222 22233333 345677888898888772211 1122222 23
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-----
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA----- 147 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~----- 147 (363)
...+..-+.++.+++..+..||..+..-.-..-+..++........+.+.+++ .++...++..-+.+|......
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 44566667888999999999999987432223334444445555566677776 477777776666666533110
Q ss_pred -------C--CH--HHHHhHHHHHHHhhccC-------ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 148 -------P--DF--EKIKICLPLLNQLIHTT-------DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 148 -------~--~~--~~~~~~i~~l~~ll~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
. .+ ....+++|.+..+|... |..+...|..||--++....+. +++ .++..+-+-+.++
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~-pVl~FvEqni~~~ 378 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMR-PVLGFVEQNIRSE 378 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHH-HHHHHHHHhccCc
Confidence 0 11 11356889999999752 2345666777776666544332 121 2455555667888
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 210 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 210 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..-|+.|..+++.+..+.......-+-+..+|.+...+.++.-.++..++|+++.++..
T Consensus 379 ~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 888999999999999887655444444467899999999988889999999999998864
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00032 Score=66.54 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=141.1
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch---hHHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhh
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA---RDLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLC 141 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~ 141 (363)
.+...+++|+..+.+-+-.++..+.+++..++.. ++.+.+.=+.+.+-++|+.. +....+.-++.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4667788888887777778888888998766532 33466676788899999852 23567777888899999
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 220 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~ 220 (363)
..++. ......-+-+|.++..+...+. ++...++.+|..++..++ ..+.+++.|.++.+.+.+.+ .+.....|+.+
T Consensus 86 ~~~~~-a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPEL-ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhh-hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 86533 3334557789999999988766 999999999999995555 55888999999999999987 55678999999
Q ss_pred HHHhhcCChh-----HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 221 VGNIATGNDH-----QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 221 L~nl~~~~~~-----~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+.+++..... ..+.+ ..+++.+...+.......+...+..|.++....
T Consensus 163 L~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 9998874331 11111 134455555555555566677777777776543
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4e-05 Score=64.76 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--CchhHHHhh--cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 80 SSPHLNLAEQATWALGNIAGDG--ARARDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
.+.+++.+..++.-|..+...+ ......+.. ...++.+...+.+.. ..+...++.++..++...... -......
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~-~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSH-FEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHh-HHHHHHH
Confidence 4677899999999999998654 112222211 245556666666544 478899999999998765332 2234567
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh---hHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND---HQT 232 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~ 232 (363)
++|.|+..+.+++..++..|-.+|..++...+..... + .+.+.....+.++.+|..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-L----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-H----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-H----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 8899999999999999999999999999776611111 1 5677778889999999999999999887544 111
Q ss_pred -HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 233 -DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 233 -~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
....-..+++.+...+.+++++||..|-.++..+....++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1111135788899999999999999999998888655333
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1789|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0018 Score=63.68 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=86.2
Q ss_pred HHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 157 LPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 157 i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++.+..++. +.++.++.-++..+..++.+.+ ....+.+.|.+..|+.+|.+. |..|..++.+|..+++ +++..+..
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSS-NGQIGKEA 1849 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhc-CcHHHHHH
Confidence 344444443 3577888888888888776666 457788889999999988754 6789999999999976 66777788
Q ss_pred HHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~ 269 (363)
+.+|++..+..++- +.++..+..|+..+..+...
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 88999998888874 45788899999999998875
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=56.35 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=68.7
Q ss_pred HHHHHHhh-ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 157 LPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 157 i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+|.|+..+ +++++.++..++++++.+- +. .+++.+.++++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 7889999999999999552 11 23899999999999999999999999882
Q ss_pred HHcCchHHHHHhhcCC-hHhHHHHHHHHHH
Q psy10729 236 IQAGGLQKMKKLLSSS-RVNIVKEAAWTIS 264 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~ 264 (363)
+...++.|.+++.++ +..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788899988775 5567888988875
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=66.61 Aligned_cols=227 Identities=15% Similarity=0.061 Sum_probs=140.4
Q ss_pred HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 25 ~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.-.+++++.+..+.+++..++..|+..|.|++.- .+......-..+...++++..+.+..++ .++..+-.+..+-..-
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999843 1111112222455667777777766654 3444444444332221
Q ss_pred hH-HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 105 RD-LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 105 ~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
++ .+.-.+++|.|-.-+...+ ...+...+.-+..|-..+ +...+.....+++-+..+|.++.++++..+=.+++++.
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVIN-PMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 22 3333455666655555444 366666665555554443 22222344677788889999999999877766666654
Q ss_pred c---CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHh-HHHHH
Q psy10729 184 D---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN-IVKEA 259 (363)
Q Consensus 184 ~---~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~-v~~~a 259 (363)
. .++.. +--...++.++..+.++++.++..|+.-+...+.-.+... ...-.|++..++..+.+.++. ++..+
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHH
Confidence 2 22211 1112457888889999999999999888888777444332 223357777777788776654 44433
|
|
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00066 Score=63.25 Aligned_cols=193 Identities=12% Similarity=0.161 Sum_probs=119.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHH---HHhhcCC--CCCCC
Q psy10729 75 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI---SNLCRNK--NPAPD 149 (363)
Q Consensus 75 l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L---~~l~~~~--~~~~~ 149 (363)
+..+..+.+..|+.+|+.++..|.... ...+. ......+++.+.+ +.++..|+.++ +|.+-.+ ....+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 555556666667777777766665421 11111 2344456666555 47777765444 4444211 11112
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH--------------------------------------
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-------------------------------------- 191 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-------------------------------------- 191 (363)
.......+..+...+.+-...++..|..+++.+-.-+++.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 223345556666666666666666666666655444333222
Q ss_pred ------------HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHH
Q psy10729 192 ------------AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 259 (363)
Q Consensus 192 ------------~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 259 (363)
.++.+|+...++.-+.++-.+||..|...++.|+...+.... ..++.|++++++....|+..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 233344455555556555668999999999999998887764 456779999999999999999
Q ss_pred HHHHHHHhcC---CHHHHHHHHH
Q psy10729 260 AWTISNITAG---NSRQIDHVIQ 279 (363)
Q Consensus 260 ~~~L~nl~~~---~~~~~~~~~~ 279 (363)
.++|..++.+ ..++...+++
T Consensus 431 i~aL~~Is~~l~i~eeql~~il~ 453 (823)
T KOG2259|consen 431 IFALTMISVHLAIREEQLRQILE 453 (823)
T ss_pred HHHHHHHHHHheecHHHHHHHHH
Confidence 9999988865 5666666655
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0014 Score=60.90 Aligned_cols=224 Identities=16% Similarity=0.103 Sum_probs=146.7
Q ss_pred CCHHHHHHhc---CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELL---DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL---~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.+++.+-.++ .+....+|..|..+...+...-+...-+ -.+|.++.-+....+..+..++..++.++...|..
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 3444455555 5667788888888887776443222221 23444444444446778889999999998776653
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
. ...-..++|.+.+.|-+.. .++++.+..++..+++-.++ .....++|.++..+.++.-.+.+ ++..|+.-+.
T Consensus 289 L-s~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF 361 (569)
T KOG1242|consen 289 L-SLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDALADPSCYTPE-CLDSLGATTF 361 (569)
T ss_pred H-HHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHhcCcccchHH-HHHhhcceee
Confidence 3 3334679999999999888 59999999999999876533 23567888888888776643322 3333332221
Q ss_pred CChhhHHHHHhcCC----hHHHHHhhcCCChhhHHHHHHHHHHhhcC--ChhHHHHHHHcCchHHHHHhhcCChHhHHHH
Q psy10729 185 GHNDKIQAVVDTGV----VPRLVELLDSEETTILTAALRTVGNIATG--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 258 (363)
Q Consensus 185 ~~~~~~~~~~~~g~----l~~l~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 258 (363)
-. .++... +|.+.+-+...+...++.++.++.|++.- ++.....++. .++|-+-..+.+..|++|..
T Consensus 362 V~------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 362 VA------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred ee------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHH
Confidence 10 111222 34444445555667889999999999873 3444444443 36666777777778999999
Q ss_pred HHHHHHHHhcC
Q psy10729 259 AAWTISNITAG 269 (363)
Q Consensus 259 a~~~L~nl~~~ 269 (363)
++++|+.+...
T Consensus 435 aarAL~~l~e~ 445 (569)
T KOG1242|consen 435 AARALGALLER 445 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=66.30 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=103.4
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh--HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
++..++.+|+++.+.++.+++...+.++.--..|. +.+...| ..|.+-+.... .++.-.++.++..+.+...-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence 56778888999999999999999998873211111 1111112 12333444444 5777777777776665442222
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
...-..+++|.+...|.+.+.++..+....++.++...++++.. .+ ..+.-.|+..|.+.+.++|..|..+++.++.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~-rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV-REWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH-HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 22235789999999999999999999999999999777754211 11 1234567778888899999999999998875
|
|
| >KOG2734|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0039 Score=55.61 Aligned_cols=247 Identities=10% Similarity=0.098 Sum_probs=165.1
Q ss_pred cHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh---------HhHHHHHhCCChHHHHHhcCCCCHHHH---
Q psy10729 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS---------EQTMTVINANAIPKFLQLLSSPHLNLA--- 87 (363)
Q Consensus 20 ~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---------~~~~~i~~~~~i~~l~~ll~~~~~~v~--- 87 (363)
....+++.++++.|+.+|..++.++....+..|..++..+- ...+.+++.++++.|+.-+..-++.++
T Consensus 117 LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea 196 (536)
T KOG2734|consen 117 LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEA 196 (536)
T ss_pred HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhh
Confidence 44678999999999999999999999999999999874321 234567888999999998875444443
Q ss_pred ---HHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 88 ---EQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 88 ---~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
...+..+-|+..-.+.+...+.+.|.+..|+.-+. ...-..-...+..+++-+..+++........-.++..+.+-
T Consensus 197 ~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~ 276 (536)
T KOG2734|consen 197 DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ 276 (536)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence 45667788888777777778888888888887544 22212456667777887777765433222222333333333
Q ss_pred hc---cC------ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh--hHH
Q psy10729 164 IH---TT------DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND--HQT 232 (363)
Q Consensus 164 l~---~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~~ 232 (363)
+. .. ..+.-.+...+|+.+...+... ..+.+..++....-+++. ....+..++++|-....+.+ ..+
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C 354 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC 354 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence 21 12 2456677788888777666654 555666556655555554 45578899999999988765 566
Q ss_pred HHHHHcCchHHHHHhhc-CC---------hHhHHHHHHHHHHHHhc
Q psy10729 233 DCVIQAGGLQKMKKLLS-SS---------RVNIVKEAAWTISNITA 268 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~-~~---------~~~v~~~a~~~L~nl~~ 268 (363)
..+++..++..++.+.- .+ ..+.-+..+..|+.+..
T Consensus 355 ~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 355 NKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 77887777766665542 21 23444555555555544
|
|
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0094 Score=51.29 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=168.5
Q ss_pred HHHHHHHHhhcCCCC-C--cHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh--
Q psy10729 4 IATRSARKMLSKERH-P--PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-- 78 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~-~--~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-- 78 (363)
-|+..+..++.+.+. . .+..+++.++++.++..+..+|.++-..|...+..++. .+.....+.+.+....+-..
T Consensus 101 LackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnl 179 (524)
T KOG4413|consen 101 LACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNL 179 (524)
T ss_pred hhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHH
Confidence 345555555554442 2 23445688999999999999999999999999999994 57777777777666544322
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
--.-+.-.+...+..+..+..-+|.....+...|.+..|..-|....+.-++.++......|+... -..++....+++.
T Consensus 180 aakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglId 258 (524)
T KOG4413|consen 180 AAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLID 258 (524)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHH
Confidence 222334566677888888888888888888889999999988886555567777777777777654 3345555678888
Q ss_pred HHHHhhccC--ChhhHHHHHHHHHHh----ccCC--hh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 159 LLNQLIHTT--DVETLSDICWALSYI----SDGH--ND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 159 ~l~~ll~~~--~~~v~~~al~~L~~l----~~~~--~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.+...+... +|--.-.++-..+.+ .-.+ +. ..+.++ -.+....+.+...++.....|+.+++.+-+ +.
T Consensus 259 licnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGS-nt 335 (524)
T KOG4413|consen 259 LICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGS-NT 335 (524)
T ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccC-Cc
Confidence 888888653 333333333333333 3221 11 111111 124455667778899999999999999866 44
Q ss_pred hHHHHHHHcCc--hHH-HHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 HQTDCVIQAGG--LQK-MKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 ~~~~~l~~~~~--l~~-L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..+.+...|- ... +....+.....-+..+.++|.+++.-
T Consensus 336 eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 336 EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 45555555442 222 33333333333456678888888763
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0042 Score=56.23 Aligned_cols=222 Identities=10% Similarity=0.106 Sum_probs=135.5
Q ss_pred HHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhCCCC
Q psy10729 47 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNT 125 (363)
Q Consensus 47 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~ 125 (363)
.|+.+|-.+....+.....+.+.+++..++..++.+-....+. .-...-.... ++.+......--+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i--------~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSI--------SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccccccc--------CHH
Confidence 4677787877666677778888999999999886432222111 0000000000 0000000000000 011
Q ss_pred cHhHHHHHHHHHHHhhc-CCCCCC--CHHHH-HhHHHHHHHhhccC---ChhhHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy10729 126 PTTFLRNIVWAISNLCR-NKNPAP--DFEKI-KICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKIQAVVDTGV 198 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~-~~~~~~--~~~~~-~~~i~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~ 198 (363)
...+.+..+..+..+.. +..... .-... ..+...|...+++. .+.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 13455566666666666 222211 21223 55667777777774 4789999999999999999988899999999
Q ss_pred hHHHHHhhc-CC---ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHh--HHH-HHHHHHH----HHh
Q psy10729 199 VPRLVELLD-SE---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN--IVK-EAAWTIS----NIT 267 (363)
Q Consensus 199 l~~l~~lL~-~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~--v~~-~a~~~L~----nl~ 267 (363)
.+.+++.+. .. +.++....-.+++.+|. |....+.+.+.+.++.+++++.+++.- ++. ..+..++ .+.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999887 43 45677777788888888 555667888899999999999876421 111 2333343 455
Q ss_pred cCCHHHHHHHHH
Q psy10729 268 AGNSRQIDHVIQ 279 (363)
Q Consensus 268 ~~~~~~~~~~~~ 279 (363)
.+.+.....+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 566555544444
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.2e-05 Score=53.59 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC--CCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 44 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 44 i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
.+...+++++|++..++...+.+.+.|++|.++.... +.+|-+++.|++++.|++.++++.++.+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999999875 566899999999999999999998776654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.012 Score=55.85 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=96.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHH---------------------------------HhCCChHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV---------------------------------INANAIPK 74 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i---------------------------------~~~~~i~~ 74 (363)
.++|.|.+-|.++|+.++..|+.+++.+|..+|+..-.+ +....+|+
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiep 260 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEP 260 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhH
Confidence 367888888888899999999999999988877542110 11235666
Q ss_pred HHHhcCCCC-HHHHHHHHHHHH--HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 75 FLQLLSSPH-LNLAEQATWALG--NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 75 l~~ll~~~~-~~v~~~a~~~L~--nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
++.++.+.. ..+...|+.++. +++.+.+..-..+ .-.+..|-.++.+.+ +.+..-.+-+++.+..... .
T Consensus 261 lt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsD-qNLKYlgLlam~KI~ktHp-----~ 332 (877)
T KOG1059|consen 261 ITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTHP-----K 332 (877)
T ss_pred HHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhCH-----H
Confidence 777776543 455555555443 3333322211111 234566766777666 4788888888888887642 2
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
.....-..++.+|.+.|+.++..|+..+.-+...
T Consensus 333 ~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 333 AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 2334455677888888888888888888777643
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.4e-05 Score=49.65 Aligned_cols=55 Identities=24% Similarity=0.480 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
+.++..++++|++++...+..... ....+++.|..+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999887766555 4457799999999999999999999999986
|
... |
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0083 Score=51.61 Aligned_cols=239 Identities=11% Similarity=0.105 Sum_probs=159.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh--Hh--HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTS--EQ--TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--~~--~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+..|.|-.-|..++..++..++..++.+..+.+ .. ...+++.++++.++.++-.++.++...|...+..++.. |.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-pa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HH
Confidence 344555555567888999999999999986644 22 23456889999999999999999999999999999976 44
Q ss_pred hhHHHhhcCChHHHHH--hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHH
Q psy10729 104 ARDLLLGLGTMPQILA--LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALS 180 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~--ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~ 180 (363)
.-..++.....+.+-. +-...+ .-++..+...+..+.+-+.........+|++..+..-++. .|.-++..++..+.
T Consensus 161 aleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 4566666666665432 222333 2455666666666666553444555678888887776766 66778888888988
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcC------Chh-HHHHHHHcCchHHHHHhhcCC
Q psy10729 181 YISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATG------NDH-QTDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 181 ~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~------~~~-~~~~l~~~~~l~~L~~~l~~~ 251 (363)
.++..... .+.+-+.|+++.+..++... +|--+-.++-..+.+... .++ .++.+. -+++....++...
T Consensus 240 eLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmn 316 (524)
T KOG4413|consen 240 ELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcC
Confidence 88855443 36667789899998888643 332233233333333221 111 122222 2355566677778
Q ss_pred hHhHHHHHHHHHHHHhcCCH
Q psy10729 252 RVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~~ 271 (363)
+++....|.-+++.+.++..
T Consensus 317 DpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred CchHHHHHHHHHHhccCCcc
Confidence 89999999999999987643
|
|
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=56.59 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=146.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
.|.+++.+.+.+.+++...---|...|+.+++.. .--|.++-+-|+++++.+|..|++++..+=. |.....+
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI~- 144 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPIM- 144 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHHH-
Confidence 3444444444444444444444444443333221 1247888899999999999888888877621 1111000
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh--
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-- 187 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-- 187 (363)
+-++-+...+.. .-++..++.++-.|-+-.. .....++..+-.+|.+.++.+.-.|+.+.-.+|-..-
T Consensus 145 ----llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~-----e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL 214 (968)
T KOG1060|consen 145 ----LLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDP-----EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL 214 (968)
T ss_pred ----HHHHHHHhcCCc-HHHHHHHHHhhHHHhcCCh-----hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH
Confidence 111222223333 4777777777777665432 2223555556666666665555554444433331110
Q ss_pred ----------------hhHHHH-----------------------HhcC------------------------ChHHHHH
Q psy10729 188 ----------------DKIQAV-----------------------VDTG------------------------VVPRLVE 204 (363)
Q Consensus 188 ----------------~~~~~~-----------------------~~~g------------------------~l~~l~~ 204 (363)
+.-+.+ .+.| +++..-.
T Consensus 215 IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkp 294 (968)
T KOG1060|consen 215 IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKP 294 (968)
T ss_pred hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccH
Confidence 000000 0000 1223334
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----
Q psy10729 205 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ----- 279 (363)
Q Consensus 205 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----- 279 (363)
++.+.++.|...++.+...++..+ .. .++++.|+.+|.+.. +++.-....+..++...+......++
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~--~~-----~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ 366 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKN--QV-----TKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVR 366 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHH--HH-----HHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEee
Confidence 556667788888888888887533 22 245677888776543 45655555555555555544444443
Q ss_pred ------------HH---------HHHHHHHHHhc---ccchHH---HHHHHHc---------CcHHHHHHHhcCCcHHHH
Q psy10729 280 ------------EG---------LDNLLEIALQV---GELNQM---ALLVEES---------GGLEKLEALQHHENETVY 323 (363)
Q Consensus 280 ------------~~---------l~~ll~~~~~~---~~~~~~---~~~l~~~---------~~~~~L~~l~~~~~~~v~ 323 (363)
+. +..|++-.+.. ....-. .+.+-++ .++.-|..++++.+..|.
T Consensus 367 ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv 446 (968)
T KOG1060|consen 367 SSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVV 446 (968)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhH
Confidence 22 22223322221 111111 1122222 256777788888888888
Q ss_pred HHHHHHHHhhcCCCc
Q psy10729 324 QKCYKIISMAFNDSA 338 (363)
Q Consensus 324 ~~a~~~l~~~~~~~~ 338 (363)
..|.-.|+++...++
T Consensus 447 ~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 447 AEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHHHhhCh
Confidence 888888887766554
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0023 Score=58.88 Aligned_cols=187 Identities=11% Similarity=0.108 Sum_probs=96.6
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
.|.|-.-+++.-+.+.-.+++.++.++..+-. ..+. ...+..|-.+|.... ...+-.|+++|..|+...+...
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv--- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV--- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee---
Confidence 34555555555566777777777777754311 1111 234555555666555 4778888888888887653221
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
.-+-+-+-.++.+.+..+...|...|-. .+.++.+..++ ..+..++++-+...+.-++.++..|+...+..
T Consensus 339 --~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 339 --SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred --eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 1222334555666666665555555433 33444444433 23333443333333444444444444434443
Q ss_pred HHHHHHcCchHHHHHhh-cCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 232 TDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
...+ +..|...| +.+..+.++.++-+++.+....|+..++.++
T Consensus 410 ~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe 453 (898)
T COG5240 410 KLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALE 453 (898)
T ss_pred HHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 3322 22344433 3455666666777777666665544444443
|
|
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00034 Score=66.59 Aligned_cols=211 Identities=9% Similarity=-0.005 Sum_probs=151.1
Q ss_pred CCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHH-HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHH
Q psy10729 57 SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 135 (363)
Q Consensus 57 ~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 135 (363)
......+...++.|+...|+++.....+.-+.....+|. .+.. +..+ ....++++.+.+.+.....-....+.
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 345566677888999999999998777777777777777 2221 1111 12345566666654433333455677
Q ss_pred HHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhH
Q psy10729 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTIL 214 (363)
Q Consensus 136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~ 214 (363)
++.||++.++...+.....-.++.+-.++..+++..+..++..+.||.-++.-+...+.+ ...++.+...+...+....
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 889999887655555555556666777788899999999999999999888777666666 4567888888877777788
Q ss_pred HHHHHHHHHhhcCChhHHH-HHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 215 TAALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~~~-~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
..++.++..++......+. ...-..+...+..++.+.+++++......+.|+.....+-
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei 704 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEI 704 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHH
Confidence 8888888777665555444 3333468889999999999999999999999965544443
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00064 Score=67.41 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=156.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---ChHhHHHHHhCCChHHHHHh
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG---TSEQTMTVINANAIPKFLQL 78 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~---~~~~~~~i~~~~~i~~l~~l 78 (363)
+++|+.-+..+..... ++..=..++|.++.++.++..++|..|+.+|+.+... -+..-..+...-++|.|-.+
T Consensus 440 K~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 440 KLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred HHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 3556665655544443 2233457899999999999999999999999887632 23333345555678888888
Q ss_pred cCC-CCHHHHHHHHHHHHHhhCC------------------CCch-----------hHHHhhcCChHHHHHhhCCCCcHh
Q psy10729 79 LSS-PHLNLAEQATWALGNIAGD------------------GARA-----------RDLLLGLGTMPQILALVQPNTPTT 128 (363)
Q Consensus 79 l~~-~~~~v~~~a~~~L~nl~~~------------------~~~~-----------~~~~~~~g~i~~L~~ll~~~~~~~ 128 (363)
+.+ ....++..-+.+|+.|+.. ++.. .+.+ ..+.=+....+|.++. .-
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-~~~V~~~v~sLlsd~~-~~ 593 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL-HHTVEQMVSSLLSDSP-PI 593 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH-HHHHHHHHHHHHcCCc-hH
Confidence 887 4445555555555555421 1110 0000 0011111223333333 34
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC
Q psy10729 129 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208 (363)
Q Consensus 129 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~ 208 (363)
+++..+..+.-||.--.... ...-+++.|+..|++.|..+|..-...+.-++..-..+ -++..++|.+.+-|.+
T Consensus 594 Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC
Confidence 55555555555554321100 11235677888888888888877777776665332211 1344668999999999
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 209 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 209 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+-|...|+.++.-|+...--....+. .+++....++-+++..+|..++..|...+..
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999874322222222 3566677778899999999999998887754
|
|
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=66.76 Aligned_cols=236 Identities=12% Similarity=0.118 Sum_probs=141.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-----hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGT-----SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-----~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+....++.+.+.+.++|..|+..+.-.+... .+..+.=....++..+++.+.+....++..|...|+.+-.-+.+
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 3556777788888888888755444433222 11111112235677888888888888888888888887644333
Q ss_pred hhHHHhhcCChHHHHHhhC-----CCCcHhHHHHHHHHHHHhhcCC------CCCCCHHHHHhHHHHHHHhhccCChhhH
Q psy10729 104 ARDLLLGLGTMPQILALVQ-----PNTPTTFLRNIVWAISNLCRNK------NPAPDFEKIKICLPLLNQLIHTTDVETL 172 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~~~~~~L~~l~~~~------~~~~~~~~~~~~i~~l~~ll~~~~~~v~ 172 (363)
.-..-.+ ..++.-++ ...+.......-|.=+.=...+ +....-...+|.=..++.-++++-.+++
T Consensus 315 ~i~QTLd----KKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR 390 (823)
T KOG2259|consen 315 IIQQTLD----KKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR 390 (823)
T ss_pred HHHHHHH----HHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence 2222222 22222111 0001111111111000000000 0011112334555677777777788999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCCh
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR 252 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 252 (363)
+.|...++.|+...+.... ..+..|+.+++++...||..|+.+|..++.+ ..+++..++.+...|.+.+
T Consensus 391 ~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRS 459 (823)
T ss_pred HHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcC
Confidence 9999999999987775432 2378999999999999999999999999764 2334456777888888888
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 253 VNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 253 ~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
++++...--.|.+.-..+.+.+..++.
T Consensus 460 ~dvRe~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 460 VDVREALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 888887666666554445555544444
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.4e-05 Score=43.53 Aligned_cols=38 Identities=45% Similarity=0.776 Sum_probs=34.8
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
+....+.+.|+++.|++++.++++++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35677889999999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.015 Score=52.25 Aligned_cols=185 Identities=24% Similarity=0.329 Sum_probs=133.0
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
...++.+.+++.+.++.++..|+.+|+.+-.. ..++.++.++. +++..++..+.++|+.+-...
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~---- 137 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGDP-----------EAVPPLVELLENDENEGVRAAAARALGKLGDER---- 137 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----
Confidence 35788889999999999999999988887732 55888889888 688999999999999996321
Q ss_pred HHHhhcCChHHHHHhhCCCCc-----------HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHH
Q psy10729 106 DLLLGLGTMPQILALVQPNTP-----------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD 174 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~-----------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~ 174 (363)
.+..++..+.+... ..++..+...+..+-. ...++.+...+.+.+..++..
T Consensus 138 -------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~ 199 (335)
T COG1413 138 -------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRA 199 (335)
T ss_pred -------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHH
Confidence 25666777765431 1234444444443322 235677888899999999999
Q ss_pred HHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHh
Q psy10729 175 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN 254 (363)
Q Consensus 175 al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 254 (363)
+..+++.+.... ..+.+.+...+.+++..++..++.+++.+-.. ...+.+...+.+.+..
T Consensus 200 Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~ 259 (335)
T COG1413 200 AASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDEDVI 259 (335)
T ss_pred HHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhccchH
Confidence 999999998665 23367888899999999999999999987431 2344566666666555
Q ss_pred HHHHHHHHHH
Q psy10729 255 IVKEAAWTIS 264 (363)
Q Consensus 255 v~~~a~~~L~ 264 (363)
++..+...+.
T Consensus 260 ~~~~~~~~~~ 269 (335)
T COG1413 260 LALLAAAALG 269 (335)
T ss_pred HHHHHHHHhc
Confidence 5555444443
|
|
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0012 Score=62.81 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=145.1
Q ss_pred CCHHHHHHhcCCCChhHHHHHHH-HHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDDENPNTQFEATW-ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~-~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
|.++.+..-+.+..++-+..|+. ++..+..+.+ . ...+|-+++.++..+.+++..+---+.|.+...|...
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D-v------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a- 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD-V------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA- 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc-h------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-
Confidence 45556666664444444544444 4555554421 1 2678889999999999999999999999997766532
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.+++..++.=..+++ ..++..|.+.+..+-.. ....-+...+...+++.++.++..+.-++.++-..+
T Consensus 85 ----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~-------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 85 ----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD-------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred ----HhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh-------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 455666666666666 36676666655544333 244566778889999999999999999999998766
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
. +...+.|.++.|..++.+++|.|...|+.+|..+...+++.....+....+..++..+...+..-+....-++.+-
T Consensus 153 ~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 153 P---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEY 229 (734)
T ss_pred h---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 5 4467789999999999999999999999999999875543111122222334444444444444444433344443
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
.-
T Consensus 230 ~p 231 (734)
T KOG1061|consen 230 VP 231 (734)
T ss_pred CC
Confidence 33
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.015 Score=53.22 Aligned_cols=188 Identities=17% Similarity=0.077 Sum_probs=133.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+..|++.|.+.++.++..++..|+.+-.. ...+.|+.++++.++.++..++.+++..-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------QAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------HHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 78999999999999999999999876632 56788899999999999988887777632
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
....+.+..+|.+.+ ..++..++.+|..+-.. ...+.|...+.+.++.++..+++++..+-. +.-
T Consensus 146 -~~~~~~L~~~L~d~d-~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A 210 (410)
T TIGR02270 146 -HDPGPALEAALTHED-ALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLA 210 (410)
T ss_pred -cChHHHHHHHhcCCC-HHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhH
Confidence 123467788888666 58999999999988654 245567788999999999999999877742 111
Q ss_pred HHHH------------------Hhc----CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 190 IQAV------------------VDT----GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 190 ~~~~------------------~~~----g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
...+ +.. ..++.|..+++++ .++..++++++.+-. ...++.|+..
T Consensus 211 ~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~ 277 (410)
T TIGR02270 211 WGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEA 277 (410)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHH
Confidence 1111 111 1334444444443 367777777776532 2467778877
Q ss_pred hcCChHhHHHHHHHHHHHHhcC
Q psy10729 248 LSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+.+.. ++..|..++..++.-
T Consensus 278 l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 278 MREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred hcCcH--HHHHHHHHHHHhhCC
Confidence 77553 888888888888864
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0004 Score=49.52 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
++...+++|+|++..++.....+.+.|+++.++.... ..+|-+++.|.|++.|++.++++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 4678899999999999999999999999999999874 447999999999999999998776
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.015 Score=58.22 Aligned_cols=250 Identities=11% Similarity=0.084 Sum_probs=155.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
++.+..+|..+.++|..++.. +.......+ ..+...+..-+++.....+...+.+|..|....+.....++ ...||
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHH
Confidence 566889999999999999965 222221111 12334455555566677888888888888755442222222 22333
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhh--c---CCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLC--R---NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~--~---~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 190 (363)
-++-.+. ..+...++++..+|..++ . .....+.......+++.+...+-.+..-.....+-+++.+.....+..
T Consensus 742 EvIL~~K-e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 742 EVILSLK-EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHHhcc-cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333 334688888888888877 2 111112234556666666665444443333332445555543322221
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-
Q psy10729 191 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG- 269 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~- 269 (363)
..-.-.+++..+.-+|.+.+++++..|+..+..++...+...-.-....+++.+..+.++...+++..+-..|-.++..
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 1112234567777788999999999999999999997766443333334888899988888889999988888888875
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy10729 270 NSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~ 290 (363)
..+.++.++.+-...++....
T Consensus 901 g~~eLe~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 901 GAEELESFLPEEDMKLLTNIR 921 (1176)
T ss_pred CHHHHHhhCHHHHHHHHHHHH
Confidence 777778888765555555443
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=42.83 Aligned_cols=39 Identities=33% Similarity=0.674 Sum_probs=35.6
Q ss_pred hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy10729 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98 (363)
Q Consensus 60 ~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~ 98 (363)
++.+..+++.|+++.|+.++++++++++..++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999989999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00083 Score=59.40 Aligned_cols=201 Identities=12% Similarity=0.141 Sum_probs=136.3
Q ss_pred HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH-----HHhh--cCChHHHHHhhCCCCcHhHHHHHHHHH
Q psy10729 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD-----LLLG--LGTMPQILALVQPNTPTTFLRNIVWAI 137 (363)
Q Consensus 65 ~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~-----~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L 137 (363)
.+...+.+..|+..|..-+-+.+..+..+++++.+.....+. .+.. ..++..|+.... ..++...+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 455668899999999988889999999999999876544432 2221 123333333333 235555666666
Q ss_pred HHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC---ChHHHHHhhcCCChhhH
Q psy10729 138 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG---VVPRLVELLDSEETTIL 214 (363)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g---~l~~l~~lL~~~~~~v~ 214 (363)
+..+.+. .........+.+..+....+.++-++...|..++..+...+......++... .+.....+|.+++.-++
T Consensus 148 Rec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 6666653 2222233345555677778888999999999999998777665555555443 45677788999999999
Q ss_pred HHHHHHHHHhhcCChhH---HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 215 TAALRTVGNIATGNDHQ---TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~---~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..++..|+.+....... .+.+-+..-+..++.+|.+.+..++.+|..++--++++
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999998743332 23334456789999999999999999999999998886
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0061 Score=60.83 Aligned_cols=221 Identities=10% Similarity=0.116 Sum_probs=141.9
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh---CCCCchhHHHhhcCChHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA---GDGARARDLLLGLGTMPQ 116 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~---~~~~~~~~~~~~~g~i~~ 116 (363)
...+.+..|+..|..++.... ....=.-++|.++.++.++...||..|+.+|..+. ++-+..-..++..-++|-
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 345677888888888875321 11112367999999999999999999999888875 333333334455667888
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcC-----------------CCCCC----------CHHHH-HhHHHHHHHhhccCC
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRN-----------------KNPAP----------DFEKI-KICLPLLNQLIHTTD 168 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~-----------------~~~~~----------~~~~~-~~~i~~l~~ll~~~~ 168 (363)
|-.++.+.....++..-+.+|+.|+.. +++.. ..... ..+-.....++..++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 888888744445555555555544421 11111 11111 233344556677777
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
+-|+...+..|.-||....... -+-=+++.|+.+|++.++.+|..-...+.-++---. ..-++..++|.|.+-+
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGL 665 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhc
Confidence 7888888888887773221110 011258899999999988888776666654433110 1113457889999999
Q ss_pred cCChHhHHHHHHHHHHHHhcC
Q psy10729 249 SSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 249 ~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.++++.|-..|..+|.-++..
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHh
Confidence 999999999999999988864
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.006 Score=59.05 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=127.3
Q ss_pred hCCCCcHhHHHHHH-HHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 121 VQPNTPTTFLRNIV-WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 121 l~~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
+.+.++ .-+..++ .+++.+..+.+ ...+++-++....+.|.++++-.-.-+.+++...+.. .++ ++
T Consensus 28 l~s~n~-~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---av 94 (757)
T COG5096 28 LESSND-YKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AV 94 (757)
T ss_pred ccccCh-HHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence 444443 3444444 56788888763 4556666777666889999998888888888888743 222 26
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+.+.+=++++++.+|..|+++++.+= . ..+++ .+++.+.+.+.++++.||+.|+.++.++-..+++
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~----~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~------- 160 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--V----KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD------- 160 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--h----HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-------
Confidence 77788889999999999999999872 2 23333 4788899999999999999999999999765543
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 280 EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 280 ~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
...+.|....+..+..+.+|.|...|...+..+.++
T Consensus 161 ---------------------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 ---------------------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ---------------------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 567777888888888888899988888888877665
|
|
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0021 Score=60.79 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=72.1
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-hcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
.+.-+.+.+++.+.||-+|.....++.---.+... .+++..|+.. .++.+.+||+.|.-+|+-++..+++..
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc
Confidence 35567778888888888888766554422222111 2345666666 567788999999999999988777654
Q ss_pred HHHHHcCchHHHHHhh-cCChHhHHHHHHHHHHHHhcCC
Q psy10729 233 DCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+..+.+| .+.++.||..|+.+|+-.|+++
T Consensus 591 ---------~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 591 ---------PSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ---------hHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 4445555 4568999999999999999874
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00079 Score=54.32 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
|+.++..++.+++-++...+...+ ..++.+...|+++++.||..|+.+|.+|...+--..+ ..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 578999999999999977765444 3489999999999999999999999999874322221 1233678888
Q ss_pred hcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy10729 248 LSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLDNLL 286 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~l~~ll 286 (363)
+.+++++++..|..++..+... .++.+...+.+.+..+-
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 8999999999999999999876 56655555555544443
|
|
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0093 Score=49.75 Aligned_cols=197 Identities=15% Similarity=0.267 Sum_probs=128.0
Q ss_pred HHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-
Q psy10729 24 LIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD- 100 (363)
Q Consensus 24 ~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~- 100 (363)
+-....+|+++..| .++.+.+|..|..+|+++. . + ..++.+-++.+++...+++.+..++..+-..
T Consensus 63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 44557889999999 4567788999999999988 2 2 5577777888777788888777777666311
Q ss_pred --------------CCchhHHHhhcCChHHHHHhhCCCCcHhHH-HHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc
Q psy10729 101 --------------GARARDLLLGLGTMPQILALVQPNTPTTFL-RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 165 (363)
Q Consensus 101 --------------~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 165 (363)
+|... ...+-+.-+-..+.+.+..-.. ..+...|+|+- ....+..+..-+.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----------~EeaI~al~~~l~ 197 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----------TEEAINALIDGLA 197 (289)
T ss_pred ccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----------cHHHHHHHHHhcc
Confidence 11110 1112233343333332221222 22333333321 1345666777777
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC--CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 243 (363)
.++.-++..+..+++.+-... .+|.+.+.|.+ +.+-||..|+.+|+.++. + ..++.
T Consensus 198 ~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~v 255 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEV 255 (289)
T ss_pred cchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHH
Confidence 777888999999999886432 26777777754 456799999999999864 3 23556
Q ss_pred HHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 244 MKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 244 L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
|...+.+.++-+++.|..+|.-.-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 777788888888888888877554
|
|
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0035 Score=59.45 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred cCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 37 LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 37 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
|++++.-+|...++.|+.+-. ++... ..+|.+..++.+++.-||++|+.++..+...
T Consensus 108 LQHPNEyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 355666677777777766652 33332 6788999999999999999999999888754
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.016 Score=57.10 Aligned_cols=220 Identities=17% Similarity=0.226 Sum_probs=126.6
Q ss_pred HhCCChHHHHHhcCCC-----CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---CC-C---cHhHHHHHH
Q psy10729 67 INANAIPKFLQLLSSP-----HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PN-T---PTTFLRNIV 134 (363)
Q Consensus 67 ~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~-~---~~~~~~~~~ 134 (363)
.+.|++..++.++.+. ...+....+..|...+.- +.+|+.+.+.|+++.|++.+. .. . ..++.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 3458999999998742 234555566666666654 778999999999999998875 22 1 135555555
Q ss_pred HHHHHhhcCCCCCCC--------HH----HHHhHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy10729 135 WAISNLCRNKNPAPD--------FE----KIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGV 198 (363)
Q Consensus 135 ~~L~~l~~~~~~~~~--------~~----~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~ 198 (363)
.++..+......... .. ....-+..+...+.+ .++.+....+++|.+++.+.++..+.++++
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 555555443211100 00 122335555555554 468899999999999999999877766543
Q ss_pred hHHHHHhhc-----CCChhhHHHHHHHHHHhhc---CC---hhHHHHHHHcCchHHHHHhhcCCh--------HhHHH--
Q psy10729 199 VPRLVELLD-----SEETTILTAALRTVGNIAT---GN---DHQTDCVIQAGGLQKMKKLLSSSR--------VNIVK-- 257 (363)
Q Consensus 199 l~~l~~lL~-----~~~~~v~~~a~~~L~nl~~---~~---~~~~~~l~~~~~l~~L~~~l~~~~--------~~v~~-- 257 (363)
+...+++=. .++..+. +..+..++. .+ ...++.+++.|++...++.+...- ++.+.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 333223221 1112222 333344433 22 346778899999998888885432 22222
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy10729 258 ------EAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293 (363)
Q Consensus 258 ------~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (363)
.+...|.-++.+.... +.++.+....+++..+..+
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvs 388 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVS 388 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCC
Confidence 2455555555553322 2223333335666555543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.036 Score=53.94 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=129.0
Q ss_pred cCCCChhHHHHHHHH-HHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 37 LDDENPNTQFEATWA-LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 37 L~~~~~~i~~~a~~~-L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
+.+.++..+..|+.- +..++.+++ .. ..+|-+++...+.+.++++.+-.-|.+++...|.. .+. .+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHH
Confidence 666677777777764 445554443 21 34667777777889999999999999999887742 222 356
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
.+.+=+++++ +.++..|++.++.+=.. .....+++.+.++++++++.||+.|+.++.++-+-+.+ ...+
T Consensus 96 ti~kDl~d~N-~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~ 164 (757)
T COG5096 96 TIQKDLQDPN-EEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHE 164 (757)
T ss_pred HHHhhccCCC-HHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhc
Confidence 7777777777 58998888887765332 45677899999999999999999999999999876663 3466
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.|....+..++.+.+|.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 78888899999999999999999999988653
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0089 Score=48.22 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=75.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL 206 (363)
+.++.+++-+++.|+...+ ......+|.+...|.++++.+|+.|+.++.+|...+--. .+..++..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence 4788999999999998653 355778999999999999999999999999998654322 1122348888899
Q ss_pred cCCChhhHHHHHHHHHHhhcC
Q psy10729 207 DSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.+++++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.018 Score=59.03 Aligned_cols=225 Identities=13% Similarity=0.127 Sum_probs=139.7
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+.+-.++.+- .+-.+.-+.-|++-++.++....+.-.... ...||.|.++=.+|+..|+.....+...|..++....+
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence 3445566666 344567778888889988854322221111 26789999999999999999988888888877544433
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHH---HHHHHHHhc
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD---ICWALSYIS 183 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~---al~~L~~l~ 183 (363)
... ..+++-|+.-|.+.. =.+++.+|-+|..|.++.+..........+...+.+.+++-...+|.. ++.+|+.++
T Consensus 1035 ~y~-neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYL-NEILDELLVNLTSKE-WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHH-HHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 344555555554444 478999999999999987433333334455566666666655666654 556666665
Q ss_pred cC---Ch--hhHHHHHhcCChHHHHH-hhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHH
Q psy10729 184 DG---HN--DKIQAVVDTGVVPRLVE-LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVK 257 (363)
Q Consensus 184 ~~---~~--~~~~~~~~~g~l~~l~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 257 (363)
.. .. .....++ ..++|.+.. -+.+.-+++|..++.++..++.+.....+... ...+|.|++....-++.|-.
T Consensus 1113 vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred hhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHH
Confidence 11 11 1111111 123444433 11255678999999999999987766554433 35777788877665554443
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.017 Score=57.22 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=130.3
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
.++..|+..+++.+..++..|+..++.++...|. ......+...+.++...++...+..++-+|+.++...- .-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--Ll 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--LL 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--cc
Confidence 5677788888888999999999999999988772 22345667777777765556889999999999998642 22
Q ss_pred HHHHHhHHHHHHHhhccC--------ChhhHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q psy10729 150 FEKIKICLPLLNQLIHTT--------DVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLDSEETTILTAALRT 220 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~--------~~~v~~~al~~L~~l~~~~~~~-~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~ 220 (363)
......++|.+..-++.+ ...||..||..++.+++..... .+.++..=.-..+..-+-+.+-.+|..|..+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 234567888888777653 3458999999999998665432 1222211111122223355666788888888
Q ss_pred HHHhhcC--Ch-hHH----------------------HHHHH-cCchHHHHHhh-----cCChHhHHHHHHHHHHHHhcC
Q psy10729 221 VGNIATG--ND-HQT----------------------DCVIQ-AGGLQKMKKLL-----SSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 221 L~nl~~~--~~-~~~----------------------~~l~~-~~~l~~L~~~l-----~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+...+-. +- ... ..+.+ .|....+++-+ .+-++.++..++|+|.++...
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 8866542 11 111 11111 24444444443 345889999999999998877
Q ss_pred CHHH
Q psy10729 270 NSRQ 273 (363)
Q Consensus 270 ~~~~ 273 (363)
.++.
T Consensus 575 ~pk~ 578 (1133)
T KOG1943|consen 575 EPKY 578 (1133)
T ss_pred hHHh
Confidence 6654
|
|
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0069 Score=60.42 Aligned_cols=218 Identities=12% Similarity=0.109 Sum_probs=138.9
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHc---CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEA---GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ 77 (363)
+|.+|...|..++.. +....+.+. .+.+.|..-+++.....+...+.+|..+-...+.....++...+.+.++.
T Consensus 670 vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred HHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 488999999998777 223444443 33344444446667778888888888877655523233333333444444
Q ss_pred hcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcC------ChHHHHHhhCC---CCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLG------TMPQILALVQP---NTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 78 ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g------~i~~L~~ll~~---~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
+ ++.+...++.+..+|..++.. +...+.| .+..++..+.. ++...+....+-++..+........
T Consensus 747 ~-Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 747 L-KEVNVKARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred c-ccccHHHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 777788888877777777620 1111111 33333333331 1212222222556666666655555
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
......+++..+.-.|.+..+++++.|+..+..++...++..-.-...-++|.+..++++..-.++..+-..+-.|++.
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6667788888889999999999999999999999977775433323334788888888887888888888888888763
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.012 Score=54.50 Aligned_cols=265 Identities=12% Similarity=0.141 Sum_probs=129.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
++....++..+++.++.++..+ ...... ...+..|-.+|+++....+-.|+++|..++...|.- ......-+..
T Consensus 274 s~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~vcN~evEs- 347 (898)
T COG5240 274 SDKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VSVCNKEVES- 347 (898)
T ss_pred cCcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--eeecChhHHH-
Confidence 4445778889999998888654 111111 145777888888998999999999999999776642 1111222222
Q ss_pred HHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCC---hhhHHHHHHHHHHhccCChhhHHHHH
Q psy10729 118 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---VETLSDICWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 118 ~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~ 194 (363)
++.+.+ +.-+.+++..|.... ....+ ..++..+..++++-. ..+...|++.|+.. .+.....+
T Consensus 348 --LIsd~N----r~IstyAITtLLKTG-t~e~i---drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~---Fp~k~~s~- 413 (898)
T COG5240 348 --LISDEN----RTISTYAITTLLKTG-TEETI---DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL---FPSKKLSY- 413 (898)
T ss_pred --Hhhccc----ccchHHHHHHHHHcC-chhhH---HHHHHHHHHHHHhhccCceEEeHHHHHHHHhh---CcHHHHHH-
Confidence 222222 223344555555443 11122 233333344444322 33344444444443 33222222
Q ss_pred hcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC----
Q psy10729 195 DTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG---- 269 (363)
Q Consensus 195 ~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~---- 269 (363)
+..|...| +.+..+.+..+..+++.+....|+..+.. ++.|...+.+. +..+.++..|+-+...
T Consensus 414 ----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a 482 (898)
T COG5240 414 ----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRA 482 (898)
T ss_pred ----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCC
Confidence 33333333 34455677777777777766555544322 33355555443 2233334444444331
Q ss_pred --CHHHHHHHHHHHH-H-HHHHHHHhcccchHHH----HHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 270 --NSRQIDHVIQEGL-D-NLLEIALQVGELNQMA----LLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 270 --~~~~~~~~~~~~l-~-~ll~~~~~~~~~~~~~----~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
....++.+....+ . ++++.+. +.+...+. ..+........|.+.+++.+.+||++|..+++..-
T Consensus 483 ~~P~~yvrhIyNR~iLEN~ivRsaA-v~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 483 KTPGKYVRHIYNRLILENNIVRSAA-VQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred CCcchHHHHHHHHHHHhhhHHHHHH-HHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 1122222222110 0 1111110 00000000 01111123445677789999999999988887654
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=62.28 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-------------hhHH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-------------ARDL 107 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~-------------~~~~ 107 (363)
..+.+..|+..+..+... --.|..-....+-..++.+|+++ ++-..+..++.-+..+++. +|+.
T Consensus 787 s~dls~~al~~l~Wv~Ka-Ll~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKA-LLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CcchhhHHHHHHHHHHHH-HHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 445566666666555421 11111111112334455666553 3444455555555544332 2333
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC-HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
+. ..++|.+++.....+ ...+.+-..+|+++..+- |... ......+.|.+.+.|.-+|..++..++.++.-+....
T Consensus 864 fF-~~ivP~l~~~~~t~~-~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 864 FF-CDIVPILVSKFETAP-GSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HH-HhhHHHHHHHhccCC-ccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 33 568899998888433 466777788888888765 3322 2244678899999999999999999999998887555
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEE---TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
..-...-+ .-++|.++.+-++++ ..+|..|+.+|..+.+.-|...-.-....++..|.+.|.++...+|++|+.+=
T Consensus 941 ~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 941 ETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 43222211 234677777766665 46999999999999884444333334456888899999999999999998875
Q ss_pred HHHh
Q psy10729 264 SNIT 267 (363)
Q Consensus 264 ~nl~ 267 (363)
.++.
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5543
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00025 Score=51.90 Aligned_cols=71 Identities=17% Similarity=0.356 Sum_probs=61.1
Q ss_pred ChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++..|+++| .+.++.+...||.-|+.++...|..+..+-+.|+-..++.++.+++++|+.+|..++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478889999 44577889999999999999889888888788999999999999999999999999988764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2734|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.059 Score=48.38 Aligned_cols=205 Identities=12% Similarity=0.100 Sum_probs=146.2
Q ss_pred HHHHHHcCCHHHHHHhcCC---C---ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC--CCHHHHHHHHH
Q psy10729 21 IDELIEAGVVPICVELLDD---E---NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATW 92 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~---~---~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~v~~~a~~ 92 (363)
++.+++.++++.|+.-+.. + ..+-.+.++.++.|+..-.+.....+.+.|.+..|+.-+.. +-..-+..|..
T Consensus 169 idaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasE 248 (536)
T KOG2734|consen 169 IDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASE 248 (536)
T ss_pred HHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHH
Confidence 4677888999999998832 1 23445678889999998888888899999999998874442 33455677888
Q ss_pred HHHHhhCCCCchhHHHhhcCChHHHHHhhC-----C---CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 93 ALGNIAGDGARARDLLLGLGTMPQILALVQ-----P---NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 93 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----~---~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
++.-+..++.+.+...-...|++.+++-+. + .+..+...+...+|+.+...+..... ....+.+..+.-++
T Consensus 249 iLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~-Fl~~EGlqLm~Lml 327 (536)
T KOG2734|consen 249 ILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRER-FLKGEGLQLMNLML 327 (536)
T ss_pred HHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhh-hhccccHHHHHHHH
Confidence 888888887777777778889999988764 2 22357888888898888887644333 33455555555555
Q ss_pred ccCChhhHHHHHHHHHHhccCCh--hhHHHHHhcCChHHHHHhhc-CCC---------hhhHHHHHHHHHHhhcC
Q psy10729 165 HTTDVETLSDICWALSYISDGHN--DKIQAVVDTGVVPRLVELLD-SEE---------TTILTAALRTVGNIATG 227 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~g~l~~l~~lL~-~~~---------~~v~~~a~~~L~nl~~~ 227 (363)
+. ....+..++..|-....+++ ..+..+++..++..+..+.. .+. .++-++.+..|+.+...
T Consensus 328 r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 328 RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 44 66678899999999988776 55667777777777666543 221 24667777777777653
|
|
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.003 Score=62.79 Aligned_cols=137 Identities=13% Similarity=0.177 Sum_probs=105.4
Q ss_pred HHHHhHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhh
Q psy10729 151 EKIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIA 225 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~ 225 (363)
.....+.|.+++.... .+|+++..|--+|+.++.-+....+. -+|.++..+. +++|.+|..+..+++.++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchh
Confidence 3456788888888854 68999999999999998766544332 2889999886 789999999999999999
Q ss_pred cCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHc
Q psy10729 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEES 305 (363)
Q Consensus 226 ~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~ 305 (363)
-..+...+... +.|...+.+.++.+|+.|..+|+++..++ ++.--
T Consensus 990 v~fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd------------------------------miKVK 1034 (1251)
T KOG0414|consen 990 VRFPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND------------------------------MIKVK 1034 (1251)
T ss_pred hhcccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh------------------------------hhHhc
Confidence 88877665444 45899999999999999999999998653 44444
Q ss_pred CcHHHHHHHhcCCcHHHHHHHH
Q psy10729 306 GGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 306 ~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
|-+..+..+..+++++++..|.
T Consensus 1035 Gql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1035 GQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccHHHHHHHhcCCcHHHHHHHH
Confidence 5555555666666666665555
|
|
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.032 Score=52.89 Aligned_cols=247 Identities=13% Similarity=0.148 Sum_probs=145.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS- 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~- 80 (363)
+.+|+-+|.++..... +.+--.+-...++.+|++.+-.+...+...+..++..+++.....+. -.+..|.+...
T Consensus 165 kqkaALclL~L~r~sp----Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~ 239 (938)
T KOG1077|consen 165 KQKAALCLLRLFRKSP----DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVV 239 (938)
T ss_pred HHHHHHHHHHHHhcCc----cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhh
Confidence 4567777777766644 22233456778888997777777777888888888776655442211 11222222221
Q ss_pred ------------CCCHHHHHHHHHHHHHhhC-CCCchhHHHhhcCChHHHHHhhCCC-CcHhHH-----HHHHHHHHHhh
Q psy10729 81 ------------SPHLNLAEQATWALGNIAG-DGARARDLLLGLGTMPQILALVQPN-TPTTFL-----RNIVWAISNLC 141 (363)
Q Consensus 81 ------------~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~-----~~~~~~L~~l~ 141 (363)
-|.|=+...+++.|.++-. +++..|... ...+..+++..+.+ ....++ ..++.-.-+++
T Consensus 240 ~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 240 VGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred cccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 1334455666777766632 222333332 22334444433311 111111 12222233444
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHH
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRT 220 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~ 220 (363)
.+.++ +.......+..|.+++.+....+|.-++..+..++...... ..+..+ ...++..|+ ..|..+|+.|+..
T Consensus 318 ~h~D~--e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 318 IHLDS--EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHcCC--cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHH
Confidence 44333 22455677788888999999999999999999998765432 444444 677888887 6688899999999
Q ss_pred HHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 221 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 221 L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
|..+|. .++.+.+++. |++.+.+.++.+|++.+.=+.-++
T Consensus 393 LY~mcD--~~Nak~IV~e-----lLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 393 LYAMCD--VSNAKQIVAE-----LLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHhc--hhhHHHHHHH-----HHHHHhhcchHHHHHHHHHHHHHH
Confidence 999985 4445555543 777777777777766444443333
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=46.25 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~ 251 (363)
+..++.+|...+..-.......+ ..+++.++..+.+++.+||..||.+|.|++.......-..+ ..+++.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 45666777777654443333333 25689999999999999999999999999874433222222 35788899999999
Q ss_pred hHhHHHHHHHHHHHH
Q psy10729 252 RVNIVKEAAWTISNI 266 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl 266 (363)
++.|+..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99988876 444444
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.028 Score=52.31 Aligned_cols=227 Identities=11% Similarity=0.052 Sum_probs=148.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCC-----ChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHH
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-----NPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKF 75 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-----~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l 75 (363)
-++|+++|.+.+-... ...+.+++.|..+.+++.|+.. ++++.....++|--++...+..+..+++. +++..+
T Consensus 49 ~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l 127 (446)
T PF10165_consen 49 SREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELL 127 (446)
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHH
Confidence 3689999999888765 4568888999999999999544 78899999999988887777788777665 777777
Q ss_pred HHhcC----------C-------CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC--------CCCcHhHH
Q psy10729 76 LQLLS----------S-------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--------PNTPTTFL 130 (363)
Q Consensus 76 ~~ll~----------~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~~~~~~~ 130 (363)
...+. . .+......++.++-|+..+.+.... -...+.++.++.++. ........
T Consensus 128 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~ 206 (446)
T PF10165_consen 128 TEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPH 206 (446)
T ss_pred HHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhH
Confidence 66653 0 1235567788899999866554322 122444555544432 11224567
Q ss_pred HHHHHHHHHhhcCC-----------CCCCCHHHHHhHHHHHHHhhcc----C----ChhhHHHHHHHHHHhccCChhhHH
Q psy10729 131 RNIVWAISNLCRNK-----------NPAPDFEKIKICLPLLNQLIHT----T----DVETLSDICWALSYISDGHNDKIQ 191 (363)
Q Consensus 131 ~~~~~~L~~l~~~~-----------~~~~~~~~~~~~i~~l~~ll~~----~----~~~v~~~al~~L~~l~~~~~~~~~ 191 (363)
..++.+|.++-... +...........+..++.+|+. . -.+.....+.+|.+++..+...++
T Consensus 207 ~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk 286 (446)
T PF10165_consen 207 SHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRK 286 (446)
T ss_pred HHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHH
Confidence 77777777763110 0000001112334444444432 2 135778888899999887655444
Q ss_pred HHHh----------------cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 192 AVVD----------------TGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 192 ~~~~----------------~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
.+.. ..+-..|++++.++.+.++..+...+..||..+..
T Consensus 287 ~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 287 YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH
Confidence 4332 24567888899888888999999999999865543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0031 Score=48.81 Aligned_cols=124 Identities=12% Similarity=0.136 Sum_probs=101.0
Q ss_pred cHHHHHHcCCHHHHHHhcCCCC------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHH
Q psy10729 20 PIDELIEAGVVPICVELLDDEN------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQAT 91 (363)
Q Consensus 20 ~~~~~~~~g~l~~L~~lL~~~~------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~ 91 (363)
+..+++..||++.|++.+.++. .++...++.++..+..+. ......+...+|..+..+...+ +..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 4578999999999999994433 477888999999999653 3344566677888888888744 478999999
Q ss_pred HHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 92 WALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 92 ~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
..|-++...++.....+.+.=-++.|+..|+..+ .+++.++...+..|....+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCC
Confidence 9999999988887778887778999999999866 5899999998888887653
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.017 Score=44.76 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=96.4
Q ss_pred hHHHhhcCChHHHHHhhCCCCc-----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC--ChhhHHHHHH
Q psy10729 105 RDLLLGLGTMPQILALVQPNTP-----TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT--DVETLSDICW 177 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~-----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~al~ 177 (363)
...|+..+|++.|+++++++.. .+....++.++..|-.+.-..-+ .....++..++...+.. |..+...++.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3567789999999999986652 47778888888888876422222 23456677777777653 6889999999
Q ss_pred HHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 178 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 178 ~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
.|-++..+++.....+.+.=-++.++..|+.++++++..|+..+-.|..+.++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999988887656655556699999999999999999999999888775443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=44.91 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~ 292 (363)
.|..++.+|+.++.+-+......++ .++++++..+.+.+.+||..|+.+|.|++....+.+-.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~---------------- 64 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP---------------- 64 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3667788888877655555555554 58999999999999999999999999998654332111
Q ss_pred ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
.=...++.|..+..++++.|+..| ..+.++
T Consensus 65 ----------~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 65 ----------YFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred ----------HHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 112356667778888888887776 444444
|
|
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.029 Score=54.66 Aligned_cols=211 Identities=12% Similarity=0.042 Sum_probs=135.7
Q ss_pred HHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 32 ICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 32 ~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
..+..+ .+..+-++..|+++++..++.. .. .-...+++..+.++......++......+|+..+..+|+. ..-.+
T Consensus 494 ~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl--~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~ 569 (1005)
T KOG2274|consen 494 ATVNALTMDVPPPVKISAVRAFCGYCKVK-VL--LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASME 569 (1005)
T ss_pred HHHHhhccCCCCchhHHHHHHHHhccCce-ec--cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhh
Confidence 334444 4555667777888777777221 11 1122366777778877777889899999999999988875 45556
Q ss_pred cCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCC----hhhHHHHHHHHHHhccC
Q psy10729 111 LGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD----VETLSDICWALSYISDG 185 (363)
Q Consensus 111 ~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~----~~v~~~al~~L~~l~~~ 185 (363)
..+.|.++.+.. +.++..+...+--++..++..... .. ......+|.+++.+..++ ......++..|.-+.++
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YG-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hc-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence 778888888765 444446666666666666653311 11 234568999999998866 55666777777766655
Q ss_pred ChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchH--HHHHhh
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ--KMKKLL 248 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~--~L~~~l 248 (363)
.+.-....+-.-++|.+.+.. .+++......+..+|..+.....++...-.+.++.. .+++++
T Consensus 648 tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~ 713 (1005)
T KOG2274|consen 648 TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVL 713 (1005)
T ss_pred CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHH
Confidence 443222223334578888765 556777888999999988876665554444444444 444444
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00058 Score=50.01 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=62.2
Q ss_pred HhHHHHHHHhh-ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 154 KICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 154 ~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
..++..|+.+| .+.|+.+..-||.=|+.++...|..+..+-+.|+-..+++++.+++++|+.+|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56788889998 45688899999999999998888877777778999999999999999999999999998765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.26 Score=47.11 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=49.6
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcC
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..|-++|.+....+|..|+..+..|+...+. .+.+-.+ .+.++..|+ ..|..+++.|+-.|-.||..
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 56677777777778888888888888775322 2223222 677888887 66889999999999888865
|
|
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.066 Score=51.51 Aligned_cols=207 Identities=12% Similarity=0.099 Sum_probs=144.1
Q ss_pred HHHHHhcCCCChhHHHHHHHHH-HHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 31 PICVELLDDENPNTQFEATWAL-TNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L-~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
.-|..+|++..+..+..|+.-+ +.++.+.. . ...+|.+++-..+.+.++++..---|...+...|...
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA---- 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA---- 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----
Confidence 3578888887777776776544 45554432 2 2568889999999999999998888999998766542
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh-HHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-CLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~-~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.=-|.++.+-|.++++ .++..|+.+|+.+=.. ...+ .+-++.+...+..+.+|+.|+.++-.+-.-.++
T Consensus 107 -LLSIntfQk~L~DpN~-LiRasALRvlSsIRvp--------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 107 -LLSINTFQKALKDPNQ-LIRASALRVLSSIRVP--------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred -eeeHHHHHhhhcCCcH-HHHHHHHHHHHhcchh--------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 2246777788887773 6666555555433211 1122 223444556678899999999999999877776
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+...+ +..+-.+|.+.++.|...|+.+.-.+|.. ..+.+. +-...+-+++.+-+..-+......|...|.
T Consensus 177 ~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 177 QKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred hHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 64433 56677788889999999999999888653 333332 446778888877777777777777777765
|
|
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.062 Score=52.70 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=98.5
Q ss_pred CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH
Q psy10729 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 191 (363)
Q Consensus 112 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~ 191 (363)
.++|.+-.+..+.. ..++...+.....+.-.. ..........|.+...++..++.++.+..+.+..+-..++..-.
T Consensus 398 ~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~---~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 398 SILPEVQVLVLDNA-LHVRSALASVITGLSPIL---PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred hhhHHHHHHHhccc-chHHHHHhccccccCccC---CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc
Confidence 34455544444443 344444443333332211 11123356677888888899999999999887776655544434
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 192 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 192 ~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.......+|.+..+-.....+++....+.+-.++.... ..+++...-+.+...+.+....+++.|+..+..++.
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 45566678888888887788899999999988876322 345555566666666777778899999998888875
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.031 Score=51.76 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=127.6
Q ss_pred CHHHHHHhc-CCCChhHHHHHHHHHHHhcCCC--hHhHHHHHhCCChHHHHHhc-CCCC----HHHHHHHHHHHHHhh-C
Q psy10729 29 VVPICVELL-DDENPNTQFEATWALTNIASGT--SEQTMTVINANAIPKFLQLL-SSPH----LNLAEQATWALGNIA-G 99 (363)
Q Consensus 29 ~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~l~~ll-~~~~----~~v~~~a~~~L~nl~-~ 99 (363)
.+..++.+. .+.++..+..++.+++.+.-.- .+... ..+..+.... ...+ ....+..+|+...+. +
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 556666666 5556778888888888887441 11111 2233333333 1222 234445556665555 3
Q ss_pred CCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC--------CCH----HHHHhHHHHHHHhhccC
Q psy10729 100 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA--------PDF----EKIKICLPLLNQLIHTT 167 (363)
Q Consensus 100 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~--------~~~----~~~~~~i~~l~~ll~~~ 167 (363)
++|.. ...++.++.++.+ .++...++.++.-+..+.+.. ... .....++|.+++..+..
T Consensus 265 ~~~~~------~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 265 GHPLA------TELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA 335 (415)
T ss_pred CCchH------HHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Confidence 33332 2345667777766 366777888888877762211 111 12346678888888887
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHH
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 246 (363)
+.+.+...+.+|.++..+-+...-.---..++|.+++-|..++++++..++.++..+....++....-++ .+++.|++
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 7778889999999999887754322222357888888899999999999999999999877665544333 35555554
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.23 Score=45.48 Aligned_cols=145 Identities=10% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
.+++..++..|+.+|+|.+...|.- ..-.....+..++.-|.++.+.++.-.++.+|..+........-....-.+.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~k-v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDK-VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHH-HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 4677899999999999999875532 222234567777777776666899999998888777544222222223344555
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChh-hHHHHHh--cCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHND-KIQAVVD--TGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~--~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
+..+..+.+++++..+....+.++..... ....+.+ .+-...++-.+.+++|.+ ..||+.....+.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 67788899999999998888887632211 1122221 122334444556666643 456777766665
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.11 Score=46.24 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=117.1
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC---HHHHHhH-HHHHHHhhcc-CChhhHHHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD---FEKIKIC-LPLLNQLIHT-TDVETLSDICWALSY 181 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~---~~~~~~~-i~~l~~ll~~-~~~~v~~~al~~L~~ 181 (363)
.+...+.+..|+..|..-+ -+.++.++.+..++......... ......- -..+..++.. +++++.-.+-..+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3344677788888877665 58999999999999887533322 2222222 2223333332 567788888888888
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc---CchHHHHHhhcCChHhHHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSSSRVNIVKE 258 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~ 258 (363)
++.... ..+.++....+..+.+....++-++...|..++..+...++......+.. .+......++.+++.-+++.
T Consensus 150 c~k~e~-l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHES-LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTSHH-HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhhHH-HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 887655 45778888899999999999999999999999999888777776666654 36667888899999999999
Q ss_pred HHHHHHHHhcC
Q psy10729 259 AAWTISNITAG 269 (363)
Q Consensus 259 a~~~L~nl~~~ 269 (363)
+...|+.+...
T Consensus 229 slkLL~ellld 239 (335)
T PF08569_consen 229 SLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHS
T ss_pred hHHHHHHHHHc
Confidence 99999999875
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.069 Score=52.39 Aligned_cols=233 Identities=11% Similarity=0.023 Sum_probs=153.9
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+....++|.+-.++.+.+..++...+.....++-..+ ..-.-....|.++..+++..+.++....+.+..+-...+.
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence 4455567777777778888888777766666543222 1111125677788888888899999999888776544444
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
..........+|.+..+-... ...++....+.+..++.... ........-+.+..-+.+....++..|...+..++
T Consensus 471 ~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALV 546 (759)
T ss_pred ccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHH
Confidence 333444556677777766654 35777778888777776542 11122223444444455566789999998888887
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
...... . ...-.++.++....+++..+|...+.++..++.- .-+.+....++|.+..+..++.+.||-.++..|
T Consensus 547 ~~~G~~--w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v---~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 547 ETFGSE--W-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV---LGQEITCEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred HHhCcc--h-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH---hccHHHHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 433311 1 1123467777777777788888888888866541 123444457889999999999999999999999
Q ss_pred HHHhcC
Q psy10729 264 SNITAG 269 (363)
Q Consensus 264 ~nl~~~ 269 (363)
-.+...
T Consensus 621 ~~i~~~ 626 (759)
T KOG0211|consen 621 PKILKL 626 (759)
T ss_pred HHHHhh
Confidence 888754
|
|
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=56.59 Aligned_cols=176 Identities=16% Similarity=0.088 Sum_probs=121.9
Q ss_pred CCHHHHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+++++...+++ ....-...++.++.|+++.+...+..+.+.-.++.+-.++-..++.++..++..+.||.-..--+..
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~ 620 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYER 620 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345555555522 2223346799999999998888888898888888888888888899999999999999866333333
Q ss_pred HHhh-cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC-HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 107 LLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 107 ~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
.+.+ ...++.....+.... +.+...++.++..++........ ..........+..++.+.+++++...+.++.|+..
T Consensus 621 si~e~~~~l~~w~~~~e~~~-E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 621 SIVEYKDRLKLWNLNLEVAD-EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred HhhccccCchHHHHHHHhhh-hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 3333 446666666665533 56666666777766665544333 44556677888999999999999999999999766
Q ss_pred CChhhHHHHHhcCChHHHHH
Q psy10729 185 GHNDKIQAVVDTGVVPRLVE 204 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~ 204 (363)
...+....++....++.+..
T Consensus 700 ~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 700 ALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred HHHHHHHHhccchHHHHHHH
Confidence 65555555555554444443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.095 Score=46.16 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=111.3
Q ss_pred CCHHHHH-HhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchh
Q psy10729 28 GVVPICV-ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARAR 105 (363)
Q Consensus 28 g~l~~L~-~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~ 105 (363)
++++.++ ..+.++++.+|..|+.||+-.+.-+.+... ..++.+...++..++.++..|+.++.-+... ....-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555544 556899999999999999999976654433 4467778888777899999999999888722 11111
Q ss_pred HH-------HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----CChhhHHH
Q psy10729 106 DL-------LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVETLSD 174 (363)
Q Consensus 106 ~~-------~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~ 174 (363)
+. ......+..+...+.+.+ .+++..++..++.|........ ...++..|+-+--+ ++..++..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11 112345666777777775 5899999999999887653222 13333333332222 34566666
Q ss_pred HHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 175 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 175 al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
.-..+-..+..+... +..+....+|.+..+.+.+
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666777777777655 4445566677777776544
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.058 Score=52.40 Aligned_cols=190 Identities=11% Similarity=0.144 Sum_probs=121.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 153 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 153 (363)
.-+..+.++.+.++..++..+..+.+... -...+...+.+...+..+++.++ -+.-++...+..||.-.+
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcevy~-------- 800 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEVYP-------- 800 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHhcc--------
Confidence 34445556777899999999999997543 33566678899999999998885 778888888888887542
Q ss_pred HhHHHHHHH-hhccCC---hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 154 KICLPLLNQ-LIHTTD---VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 154 ~~~i~~l~~-ll~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
..++|-+.+ ..+..+ ++.+...-.++.++...-.+......+ -++..+++.+.+++...|..++..++++|....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 445665555 333211 233333335555554332222111111 345666677777777889999999999997544
Q ss_pred hHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
......+ ..+...++.+.. ++++-+|+.|+..+..+..+..+...
T Consensus 880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlL 925 (982)
T KOG4653|consen 880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLL 925 (982)
T ss_pred hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhH
Confidence 3322222 123444555554 45788999999999988876554433
|
|
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.043 Score=49.80 Aligned_cols=273 Identities=10% Similarity=0.025 Sum_probs=144.4
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh-----CCCCchhHHHhhcCChH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-----GDGARARDLLLGLGTMP 115 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~ 115 (363)
...++.+++.+|..++..-.-.+...+ .....+...+.+.++.++..+..++-.+. ++.|+..+.-...|.+-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 345777888888887755443343333 33445556666788889888888877764 33343322222233222
Q ss_pred HHH------HhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHHHHHhccCChh
Q psy10729 116 QIL------ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 116 ~L~------~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.++ ....+..........|-++.++.........-.. ....+.+..-. ++.+.-++..|.++++-+.-++..
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l 424 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL 424 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence 221 1111111124556667777777654321111111 11112222212 233344677788888777766554
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc----CChh---HHHHHHHcCchHHHHHhhcC---ChHhHHHH
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT----GNDH---QTDCVIQAGGLQKMKKLLSS---SRVNIVKE 258 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~----~~~~---~~~~l~~~~~l~~L~~~l~~---~~~~v~~~ 258 (363)
......-......+...+.+..-..|..+.|+++|+.. +-+. ....+... .+..+...... ..++|+.+
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhH
Confidence 44444444556777777777777899999999999974 1122 22223221 23333333322 35778888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH-HHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 259 AAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE-KLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 259 a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~-~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
|..+|.|+... .+.+.+-++.. +.+ |.+. .+....-..+..|+=+|+.++.++|.++
T Consensus 504 avraLgnllQv----lq~i~~~~~~e-----------------~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 504 AVRALGNLLQF----LQPIEKPTFAE-----------------IIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHhhHHHH----HHHhhhccHHH-----------------HHH-HHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 88888887521 11111111111 111 1111 1222244567788888999999998877
Q ss_pred cc
Q psy10729 338 AE 339 (363)
Q Consensus 338 ~~ 339 (363)
..
T Consensus 562 a~ 563 (728)
T KOG4535|consen 562 AL 563 (728)
T ss_pred cc
Confidence 54
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.038 Score=56.82 Aligned_cols=243 Identities=14% Similarity=0.195 Sum_probs=144.1
Q ss_pred HHHHHhcCCCChhHHHH-HHHHHHHhcCCChHhHH-HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-hhHH
Q psy10729 31 PICVELLDDENPNTQFE-ATWALTNIASGTSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-ARDL 107 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~-a~~~L~~l~~~~~~~~~-~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~ 107 (363)
..|.+.+.++++..|.. ++|.|.-+- .....+. ......+...+.++|.+.++-++..|...++-+..-... .+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq-~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k-- 897 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQ-YLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK-- 897 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH-HhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH--
Confidence 34555557888888755 455554432 2121222 222234558889999998888888888877766532222 22
Q ss_pred HhhcCChHHHHHhhCCCCc--------HhH-------------HHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc
Q psy10729 108 LLGLGTMPQILALVQPNTP--------TTF-------------LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 166 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~--------~~~-------------~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~ 166 (363)
.+.+..|++-|..+.. .++ ....-.=|.+|+++- .++ ..+-.++++-+|
T Consensus 898 ---~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-~qP------dLVYKFM~LAnh 967 (1702)
T KOG0915|consen 898 ---KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-GQP------DLVYKFMQLANH 967 (1702)
T ss_pred ---HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-CCh------HHHHHHHHHhhh
Confidence 2233344433321100 000 011122344555543 222 223334555544
Q ss_pred -CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHH
Q psy10729 167 -TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK 245 (363)
Q Consensus 167 -~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~ 245 (363)
.-..-+.-|+..++.++.......+... ..++|+|.+.=-++++.|+.....+...|+..+........+ .+++-|+
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence 2344567788888888866554444433 246888888888999999998888888888766666655554 4777788
Q ss_pred HhhcCChHhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Q psy10729 246 KLLSSSRVNIVKEAAWTISNITAGN-SRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 246 ~~l~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~l~~ll~~ 288 (363)
.-+.+....||+.+|.||..+..+. ..+....+.+....+++.
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999873 333333333444444443
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.2 Score=46.41 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=104.9
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh--------hhHHHHHhcC-
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN--------DKIQAVVDTG- 197 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~--------~~~~~~~~~g- 197 (363)
........|+...+....++ ....++..++.++.+ +++...+...++-+....+ ..++.+.++.
T Consensus 248 ~~~~~~~~Wi~KaLv~R~~~-----~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 248 PQALEILIWITKALVMRGHP-----LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 34556667777776655432 234566667777766 6778888888888886633 2234444444
Q ss_pred ---ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 198 ---VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 198 ---~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
++|.+++..+..+...+..-+.+|+++..+-|...-.-.-..++|.|++.++.++++++..+..+|..+....++.+
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 35666666666666688899999999998766433111113689999999999999999999999999998877666
Q ss_pred HHHHHHHHHHHHH
Q psy10729 275 DHVIQEGLDNLLE 287 (363)
Q Consensus 275 ~~~~~~~l~~ll~ 287 (363)
..-++..+..+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 5555544444443
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG3036|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.16 Score=42.22 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHH
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQIL 118 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~ 118 (363)
...|+..|-.+++ .++.|..+++..+--.+-.+|.. +.+-+|-.++.+++.+...++ +....+...+++|..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4567767777774 58899999988877777777752 346789999999999996544 4556677899999999
Q ss_pred HhhCCCCcHhHHHHHHHHHHHhhcCCCCCC-------CHHHHHhHHHHHH-HhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 119 ALVQPNTPTTFLRNIVWAISNLCRNKNPAP-------DFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 119 ~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-------~~~~~~~~i~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.+..+. +.-+..+..++..+..++.... .+......+..++ ++.+.+++.+.+.++++..+++.++.
T Consensus 175 rime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 175 RIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 9999876 4556666666666655542211 1122223333333 34455888999999999999987654
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.1 Score=46.09 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=119.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHH--hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC---CCch
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI--NANAIPKFLQLLSSPHLNLAEQATWALGNIAGD---GARA 104 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~---~~~~ 104 (363)
+.-.+..+.......|..++..+.++..... ..+.+. ...+++.+.+.++....+-+..|+.+++-++-. .+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3344555566678899999999999875432 222222 124577788888877666666777777777633 1222
Q ss_pred hHHHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHH--hhcc----------CChh
Q psy10729 105 RDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQ--LIHT----------TDVE 170 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~--ll~~----------~~~~ 170 (363)
. .++ ....|.|.+.+.+.. ...++..++.+|+-++.-.... .........+..+.. ..+. +++.
T Consensus 124 ~-ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 124 E-EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred H-HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 2 222 467888888888544 3456667777777666532111 122211233442222 1221 2356
Q ss_pred hHHHHHHHHHHhccCChh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 171 TLSDICWALSYISDGHND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
+...|+.+.+-|...-+. ...... ...+|.|..+|.+++..||..|-.+|+-+..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888999888888755554 223322 3459999999999999999999998886643
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.075 Score=48.13 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=113.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCCh
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLL--GLGTM 114 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i 114 (363)
.++..+-+..|+.-|..+..........-.-..++..++..|.+ .++..+..|+++|..++...|. .+. ..-.+
T Consensus 297 g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai 373 (516)
T KOG2956|consen 297 GSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAI 373 (516)
T ss_pred CccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHH
Confidence 34566777788885666554443222211111445667777876 7788999999999999977553 222 12345
Q ss_pred HHHHHhhCCCCcHhHHHHHH-HHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 115 PQILALVQPNTPTTFLRNIV-WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
..+++.-.+..+ ++...|. -|+.-++++. +.. .+..+..++...|......++..+..+...-+..--..
T Consensus 374 ~K~Leaa~ds~~-~v~~~Aeed~~~~las~~-P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ 444 (516)
T KOG2956|consen 374 CKVLEAAKDSQD-EVMRVAEEDCLTTLASHL-PLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN 444 (516)
T ss_pred HHHHHHHhCCch-hHHHHHHHHHHHHHHhhC-chh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 555555555554 4444444 4566666665 432 34445556666787777888888888886554321222
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
+-.++.|.+++--.+.+..||+.|+++|-.+..
T Consensus 445 ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 445 LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 234778899998999999999999999998864
|
|
| >KOG1078|consensus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.046 Score=52.51 Aligned_cols=245 Identities=16% Similarity=0.142 Sum_probs=129.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHH--------HHHhCC---
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--------TVINAN--- 70 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~--------~i~~~~--- 70 (363)
+++|+.++..+-+... +.+. ..+..|--+++++.+.+|..|.++|..+|...|.... .+-+.+
T Consensus 262 ~~EaArai~~l~~~~~----r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsI 335 (865)
T KOG1078|consen 262 IYEAARAIVSLPNTNS----RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSI 335 (865)
T ss_pred HHHHHHHHhhccccCH----hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccch
Confidence 3566666666433222 2222 2566677777999999999999999999987664321 111111
Q ss_pred ChHHHHHhcCCCCH----HHHHHHHHHHHHhhCCCCch-----hHHH-----hhcCChHHHHHhhCCCCcHhHHHHHHHH
Q psy10729 71 AIPKFLQLLSSPHL----NLAEQATWALGNIAGDGARA-----RDLL-----LGLGTMPQILALVQPNTPTTFLRNIVWA 136 (363)
Q Consensus 71 ~i~~l~~ll~~~~~----~v~~~a~~~L~nl~~~~~~~-----~~~~-----~~~g~i~~L~~ll~~~~~~~~~~~~~~~ 136 (363)
.-..+..+|+...+ .+..+.....++++.+.... +... ...+.++.|.++|+....-+..+....+
T Consensus 336 at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~ 415 (865)
T KOG1078|consen 336 ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDA 415 (865)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 22334455554433 33344444444444322110 0000 1123455555555544444556666666
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
+..+...... .....+..|...+.+ -+....+.+.|+-+-...+... .....+..+...+.=++..+|..
T Consensus 416 Ii~iie~~pd-----sKe~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a~---~Pskyir~iyNRviLEn~ivRaa 485 (865)
T KOG1078|consen 416 IIDIIEENPD-----SKERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPKAP---NPSKYIRFIYNRVILENAIVRAA 485 (865)
T ss_pred HHHHHHhCcc-----hhhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCCCC---CcchhhHHHhhhhhhhhhhhHHH
Confidence 6555553311 112233333333332 1222333344444432222100 00122333444444456779999
Q ss_pred HHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
|..+|.++...++.... .+.-.|...+.+.+.+++..|.+++.++-
T Consensus 486 Av~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 486 AVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 99999999865554432 45556778888889999999999999887
|
|
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.25 Score=41.52 Aligned_cols=221 Identities=17% Similarity=0.246 Sum_probs=128.3
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
..+.+...+++...+...+++|+.... ...+|.+...+.+. .+-+|-.|..+|+.+. + +.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~----- 100 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE----- 100 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh-----
Confidence 333333333344455566666666553 25688888888754 4678888999999887 2 32
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC--------------CCCCCHHHHHhHHHHHHHhhccCChhh-HH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--------------NPAPDFEKIKICLPLLNQLIHTTDVET-LS 173 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--------------~~~~~~~~~~~~i~~l~~ll~~~~~~v-~~ 173 (363)
..+.+-+..+++. .++...+..++..+-... +|.+. .....+...=..+++...+.. +.
T Consensus 101 ----~~~~l~k~~~dp~-~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p-~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 101 ----SLEILTKYIKDPC-KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP-ANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred ----hHHHHHHHhcCCc-cccchHHHHHHHHHHHhhccccccccCccccCCCCCc-cccccHHHHHHHHHhcchhHHHHH
Confidence 2344445553333 244444444444433221 11111 011112222223333333333 34
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC--C
Q psy10729 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--S 251 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~ 251 (363)
.+...|.|+-. ++. +..+++-+..++.-.|..+.++++.|-+ + -.++.|.+.|.+ .
T Consensus 175 ~amF~LRn~g~--Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 175 RAMFYLRNIGT--EEA---------INALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETE 232 (289)
T ss_pred hhhhHhhccCc--HHH---------HHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhc
Confidence 55555555431 211 4555666677777799999999998843 1 346667777754 4
Q ss_pred hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 252 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
.+.||.+|+.+|+.++.. ..++.|..+.+++.+-|++-|.-+++
T Consensus 233 ~pMVRhEaAeALGaIa~e------------------------------------~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIADE------------------------------------DCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred chHHHHHHHHHHHhhcCH------------------------------------HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 689999999999988632 24455777788888888888888887
Q ss_pred hh
Q psy10729 332 MA 333 (363)
Q Consensus 332 ~~ 333 (363)
.+
T Consensus 277 m~ 278 (289)
T KOG0567|consen 277 ML 278 (289)
T ss_pred HH
Confidence 65
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.045 Score=53.11 Aligned_cols=226 Identities=9% Similarity=0.060 Sum_probs=140.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
++.-+..+.++.+.++..++..|..+... ......+...+++...+..+++.++-+--+|+..+..+|.-.|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------
Confidence 34444455667778999999999999954 3555567777999999999999998887788888888885433
Q ss_pred hcCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 110 GLGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
..++|-+.+--.+. ...+.+-.+-.++.++....++. .......++.........+|...+..++..+++++...
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel-~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL-VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccH-HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 44567777644321 11233344445666655543221 11223456666777777778888999999999999554
Q ss_pred hhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHc---CchHHHHHhhcC-ChHhHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSS-SRVNIVKEAAW 261 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l~~-~~~~v~~~a~~ 261 (363)
.......+ ..++..++.+... +++.+|+.|+..+..+..+.....-.+... +....+...... ++..++..|+.
T Consensus 879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 43222211 2234555555544 456799999999999887654433333322 333444444433 34556666666
Q ss_pred HHHHH
Q psy10729 262 TISNI 266 (363)
Q Consensus 262 ~L~nl 266 (363)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.69 Score=46.49 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=140.7
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-HHHHHHHHHHHHHhhCCCCchh
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
++++..|+..+++.+..++..|+..++.++...|..- ...++...+.++..-+ +..-..++-+|+.++...--.-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3677788888899999999999999999998776221 1245666666554322 3444578889999985532221
Q ss_pred HHHhhcCChHHHHHhhCCC-------CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH-HHhhccCChhhHHHHHH
Q psy10729 106 DLLLGLGTMPQILALVQPN-------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL-NQLIHTTDVETLSDICW 177 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~-------~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l-~~ll~~~~~~v~~~al~ 177 (363)
..+ ..++|.++.-+..+ ....++..++++.+.+++..++..-......+.+.+ ...+-+.+..+|+.|..
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 112 34566666665422 235789999999999998765432111222222222 22333455667777777
Q ss_pred HHHHhccCCh---hh----------------------HHHHHh-cCChHHHHHhh-----cCCChhhHHHHHHHHHHhhc
Q psy10729 178 ALSYISDGHN---DK----------------------IQAVVD-TGVVPRLVELL-----DSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 178 ~L~~l~~~~~---~~----------------------~~~~~~-~g~l~~l~~lL-----~~~~~~v~~~a~~~L~nl~~ 226 (363)
++-....... .. ...+.+ .|....+++-+ .+=++.+|+.+.++|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 6654431100 00 000111 12333333332 33477899999999999876
Q ss_pred CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
..++. .....++++++....++...+..+..+.+.++.
T Consensus 574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 574 TEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 55443 235788889988888887777776666655554
|
|
| >KOG1078|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.12 Score=49.69 Aligned_cols=255 Identities=15% Similarity=0.139 Sum_probs=137.4
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh--------H
Q psy10729 35 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------D 106 (363)
Q Consensus 35 ~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--------~ 106 (363)
..+.+....+...|++.+.++...++.... -.+..+-.++.++..-+|-.|.++|..++.-.|... .
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 333566788899999999999865544332 267788888889999999999999999986555321 1
Q ss_pred HHhhcC---ChHHHHHhhCCCCc---HhHHHHHHHHHHHhhcCCCCCC----------CHHHHHhHHHHHHHhhcc-CCh
Q psy10729 107 LLLGLG---TMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAP----------DFEKIKICLPLLNQLIHT-TDV 169 (363)
Q Consensus 107 ~~~~~g---~i~~L~~ll~~~~~---~~~~~~~~~~L~~l~~~~~~~~----------~~~~~~~~i~~l~~ll~~-~~~ 169 (363)
.+-+.+ .-.++..+|+.+.. ..+........++++.....-. -.......+..|..+|.. +..
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~ 406 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF 406 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence 111100 12233334442221 1222233333333332210000 001123445555555544 334
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
+.......++..+....++.++ .++..|..++.+.. ...-+.++|.-+-...+.. ....+.+..+.+.+.
T Consensus 407 e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIRFIYNRVI 476 (865)
T ss_pred hHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhHHHhhhhh
Confidence 5566666666666655554322 22566666665432 3444444444443322110 011233334444444
Q ss_pred CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHH
Q psy10729 250 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKI 329 (363)
Q Consensus 250 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~ 329 (363)
-.+..++..|..++.++..+.+.- .......+.+.+.+.+.+||++|...
T Consensus 477 LEn~ivRaaAv~alaKfg~~~~~l------------------------------~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQDVVL------------------------------LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCCc------------------------------cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 456677777888887776442111 11234456677888889999998888
Q ss_pred HHhhc
Q psy10729 330 ISMAF 334 (363)
Q Consensus 330 l~~~~ 334 (363)
+...-
T Consensus 527 l~~l~ 531 (865)
T KOG1078|consen 527 LKNLE 531 (865)
T ss_pred HHHhh
Confidence 88766
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.28 Score=44.57 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=104.7
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC------C------------------Ch----------hHHHHHH
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------E------------------NP----------NTQFEAT 49 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~------~------------------~~----------~i~~~a~ 49 (363)
.|++.|-.++...+ .....+.+.+++..++..+.. + .. .+...-+
T Consensus 3 ~av~~ld~~~~~~~-~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL 81 (379)
T PF06025_consen 3 RAVRFLDTFIDSSP-DAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL 81 (379)
T ss_pred HHHHHHHHHHhccH-HHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence 35555666555443 456778888999998777621 1 00 1122334
Q ss_pred HHHHHhcC---CChHhHHHHHh-CCChHHHHHhcCCCC---HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC
Q psy10729 50 WALTNIAS---GTSEQTMTVIN-ANAIPKFLQLLSSPH---LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 50 ~~L~~l~~---~~~~~~~~i~~-~~~i~~l~~ll~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 122 (363)
+.+..+.. +..+....+++ ...+..|...++++. +.+-..++.++..+..+.|..-..+.+.|.++.+++.+.
T Consensus 82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 44444443 12222223444 455666777777654 678889999999999999999999999999999999877
Q ss_pred -C--CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc
Q psy10729 123 -P--NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 166 (363)
Q Consensus 123 -~--~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~ 166 (363)
. ..+.++....-.++..||-+. ...+.....+.++.+.+.+.+
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCC
Confidence 2 234678888888888898876 333334445666666666544
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=56.66 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=125.1
Q ss_pred CCHHHHHHhc----CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
...|.+++.. ..++|++|..|.-+|+.++.-+.++.. .-+|.|+..|. ++++.+|.+++-+++-++...|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 4566777777 346799999999999999877666665 56889999997 8889999999999999987666
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
... ...-+.|.+-|++.+ ..+++.+..+|++|...+ .+...|.++-+..++.++++.++.-|=.....+
T Consensus 994 nli-----e~~T~~Ly~rL~D~~-~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 NLI-----EPWTEHLYRRLRDES-PSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccc-----chhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 543 334466777777777 599999999999998774 467789999999999999999988887777777
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
+...+.. ..++|.++.-|+++
T Consensus 1063 s~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccch------hhhchHHHHhhccC
Confidence 7554321 14577777777765
|
|
| >KOG3036|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.23 Score=41.26 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC----CCCcHhHHHHHHHHHHHhhcCCCCCC-CHHHHHhHHHH
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----PNTPTTFLRNIVWAISNLCRNKNPAP-DFEKIKICLPL 159 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~~i~~ 159 (363)
.=...++..+..++.+ |+.|..|.+..+--++-..|. +...+-++..+++.++.|...++... .+....+++|.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3346777777777777 778888888776666666665 33336788889999999998875432 33455799999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhH------HHHHh-cCChHHH-HHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKI------QAVVD-TGVVPRL-VELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~------~~~~~-~g~l~~l-~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
....++.++...+..|..++..+..++.... +.+.. .-.+..+ .++.+.+++.+.+.++++..+++. ++..
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-npra 251 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRA 251 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHH
Confidence 9999999999999999999988876654211 11100 1123333 334466788999999999999976 5544
Q ss_pred HHHH
Q psy10729 232 TDCV 235 (363)
Q Consensus 232 ~~~l 235 (363)
+..+
T Consensus 252 r~aL 255 (293)
T KOG3036|consen 252 RAAL 255 (293)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG1566|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.17 Score=43.53 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=134.1
Q ss_pred HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh--cCChHHHHHhhCCCC-cHhHHHHHHHHHHHh
Q psy10729 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNT-PTTFLRNIVWAISNL 140 (363)
Q Consensus 64 ~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l 140 (363)
..+.+.|.++.++..+..-+-+-+..++.+..++-+..-..|....+ ..-...+-.++.... ..++...+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 35567799999999998888888888999999887443222211111 112222233333222 134444444445544
Q ss_pred hcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCC---hHH-HHHhhcCCChhhHHH
Q psy10729 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV---VPR-LVELLDSEETTILTA 216 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~---l~~-l~~lL~~~~~~v~~~ 216 (363)
.++. ........+.-+......++.+.-++...|..+...+..........++.... ++. --.++.+.+.-.+..
T Consensus 153 irhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 4442 22222333445555666667777788889999888887666555555554443 233 556788889999999
Q ss_pred HHHHHHHhhcCChh---HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 217 ALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 217 a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+...++.+..+.+. ..+.+-+..-++.|+.+|.+++..++-+|-....-+.++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 99999999874332 344455456789999999999999999999999988876
|
|
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.075 Score=51.92 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=141.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 116 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 116 (363)
.++.+.+...|.+++...+........ +.. .++...+..+. +..+.++..++.+++..++. +.-.. ..-++++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLS-LQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccc-cchHHHHH
Confidence 566677777899999877754221111 111 22233333333 45567888888888888732 22111 12455666
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh--ccCChhhHHHHHHHHHHhccCChhhHHHHH
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 194 (363)
|+.+..... .++....+.+|+..+..+ +.......+.+.|....+. .++||.+...+--++-.++.....+ .. .
T Consensus 535 L~qlas~~s-~evl~llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~-m 610 (1005)
T KOG2274|consen 535 LLQLASKSS-DEVLVLLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GP-M 610 (1005)
T ss_pred HHHHccccc-HHHHHHHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cc-h
Confidence 666665544 588888899999999876 4444445566777766654 3478877776666666666433222 11 1
Q ss_pred hcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhh-cCChHhHHHHHHHHHHHHhc
Q psy10729 195 DTGVVPRLVELLDSEE----TTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 195 ~~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~ 268 (363)
....+|.+++.+..+. .....-|+..|..+.++.+. ..+.++. -++|.+.++. .+++..+...+.-+|..+..
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 2245899999998775 56778888888888875443 3344443 4677777776 45577788888888888877
Q ss_pred CCHHH
Q psy10729 269 GNSRQ 273 (363)
Q Consensus 269 ~~~~~ 273 (363)
.+.++
T Consensus 690 ~~~eq 694 (1005)
T KOG2274|consen 690 VTLEQ 694 (1005)
T ss_pred cCHHH
Confidence 65544
|
|
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.093 Score=51.79 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=128.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCC
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPH 83 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~ 83 (363)
++.++...+...+ ++ ....+.=+++-+...++++.--+|..|+|+++.++.- +....-.-..++....++|. +.+
T Consensus 441 ~vgsl~~~L~K~s-~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 441 MVGSLASILLKKS-PY-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI--DFKDPNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHccCC-ch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHhccCCc
Confidence 3445555555544 32 3334445566666667788888999999999999943 22222222355666677777 677
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhCCCCcHhHHHHHHHHH-HHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L-~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
..|+..|+.+|..+..+.+.....+. .-+.++.++.+.+..++ +....++..+ ...+..- ..........+....
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV~~fseEl-sPfA~eL~q~La~~F 594 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIVCKFSEEL-SPFAVELCQNLAETF 594 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHH
Confidence 88999999999999877554322221 12334444455554443 3333333322 2222221 111222334555666
Q ss_pred HHhhcc---CC---hhhHHHHHHHHHHhc------cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 161 NQLIHT---TD---VETLSDICWALSYIS------DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 161 ~~ll~~---~~---~~v~~~al~~L~~l~------~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
.+++.. .+ .+=...|.++|..+. ...+...+ -++.-++|.+-..|.+.-.++-++++..+..+....
T Consensus 595 ~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 595 LKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 666663 11 122233333333332 11121111 122334555555666666677777777777776544
Q ss_pred hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
++-.-.++ |+++.+.++++....+.-...+-+|.|+
T Consensus 674 ~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 674 KEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred cccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 43333333 2344444444433333333333333333
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=45.97 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=98.1
Q ss_pred hHHHHHhhCC-CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHH
Q psy10729 114 MPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192 (363)
Q Consensus 114 i~~L~~ll~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 192 (363)
++.++..+.. ..+.+++..+.-++..+-.. ........+-.++..++...+.+-...++.++..+-...++-...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455554443 33357888888888877311 111222344555666666666667788888999998888766555
Q ss_pred HH-hcCChHHHHHhhc--CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC-ChHh-HHHHHHHHHHH
Q psy10729 193 VV-DTGVVPRLVELLD--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVN-IVKEAAWTISN 265 (363)
Q Consensus 193 ~~-~~g~l~~l~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~-v~~~a~~~L~n 265 (363)
++ ..|.++.+..+.. .++..+...++.++..-|. +...+ ..+...+++.|.+..+. +++. ++..|+-.|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 54 5688999999998 7778889999988887554 44444 45555689999999954 4555 78888877764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0028 Score=34.57 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=25.7
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
++|.+++++++++++||..|+++++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.051 Score=45.93 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC
Q psy10729 44 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 44 i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 122 (363)
....|+.+|--++.-++..+..+.....+..++.++. ...+.++..++.+|..+..++|.+...|.+.+|+..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4566888998888889999999999999999999995 456889999999999999999999899999999999999998
Q ss_pred C-CCcHhHHHHHHHHHHHhhcC
Q psy10729 123 P-NTPTTFLRNIVWAISNLCRN 143 (363)
Q Consensus 123 ~-~~~~~~~~~~~~~L~~l~~~ 143 (363)
+ ..+.+++-.+...|.-....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 3 33457766666665544443
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.58 Score=41.35 Aligned_cols=190 Identities=14% Similarity=0.157 Sum_probs=115.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC-CCCH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP-APDF 150 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~-~~~~ 150 (363)
..+..+.+.....|+.++..+.++...... .+.+. ...+++.+.+.++.+.. +-+..++.++.-++-.-.. ....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 344445556688899999999988855332 23332 23467777788877664 4455566666666654221 2233
Q ss_pred HHHHhHHHHHHHhhccCC--hhhHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHH--hhc----------CCChhh
Q psy10729 151 EKIKICLPLLNQLIHTTD--VETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVE--LLD----------SEETTI 213 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~--~~v~~~al~~L~~l~---~~~~~~~~~~~~~g~l~~l~~--lL~----------~~~~~v 213 (363)
.....+.|.|...+.... +.++..++.+|+-++ ..........++ .+..+.. ..+ .+++.+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 455678888888887643 456666666666554 333322221111 1221111 111 123568
Q ss_pred HHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 214 LTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 214 ~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...|+.+.+-|...-+. .....++ ..++.|..+|.+++.+||..|..+|.-+..
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88888888877764443 2333333 468999999999999999999999887754
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.28 Score=41.36 Aligned_cols=192 Identities=18% Similarity=0.189 Sum_probs=119.4
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHHHH-------hcCCCC--H---HHHHHHHHHHHHhhCCCCchhHH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKFLQ-------LLSSPH--L---NLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l~~-------ll~~~~--~---~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+++.|+.|+.-|..--...++....+-.. |.+..|++ .+..+. . .-...++..+..++.+ |+.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 56778889888888775555544444333 44444432 222222 1 2335666777777776 778999
Q ss_pred HhhcCChHHHHHhhCCCC----cHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 108 LLGLGTMPQILALVQPNT----PTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~----~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
+.+..+.-+|...|.... -+.++-.++++++.+...+++. ..+....+++|.....++.++.-.+..|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999988888888876332 2567778889999999865322 12333478999999999999888888888888777
Q ss_pred ccCChh---------hHHHHHhcCChHHHHH-hhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 183 SDGHND---------KIQAVVDTGVVPRLVE-LLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 183 ~~~~~~---------~~~~~~~~g~l~~l~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
..++.. +...+ ..++..++. +...+++.+.+..+++-..|+. ++..+..+.
T Consensus 167 L~dd~GL~yiC~t~eRf~av--~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~ 227 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAV--AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALR 227 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHH--HHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence 655431 11111 122333333 4567788999999999999977 444444444
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=48.15 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC---------CCChhHHHHHHHHHHHhcCCChHhHHHHHh-CCChH
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLD---------DENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIP 73 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~---------~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~ 73 (363)
+.+..|+..|....-..++.|++.||+..|+++|. ..+.+.+..++.||..+.. +......++. .+++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHH
Confidence 34556666666665456789999999999999982 1345788999999999994 4555665555 68999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIA 98 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~ 98 (363)
.++..+.+++..++..++..|..+|
T Consensus 162 ~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.37 Score=46.12 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=87.6
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL 206 (363)
..+.+-+...+..+-..+ .......+++..+..-..+.+..++..+|..|..++...... ..-+-.++...+..-+
T Consensus 60 dRIl~fla~fv~sl~q~d---~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl 135 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLD---KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRL 135 (892)
T ss_pred HHHHHHHHHHHHhhhccC---chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHH
Confidence 455555555555555332 233466788888888888899999999999999998744332 2223346677788888
Q ss_pred cCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHH
Q psy10729 207 DSEETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTIS 264 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~ 264 (363)
.+..|.||..|+.+|+.+=.. .++.. .+...+..++++ ++++||+.|...+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEEC------PVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 888999999999999998521 12221 345567777765 58999997554443
|
|
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.37 Score=46.43 Aligned_cols=115 Identities=9% Similarity=0.045 Sum_probs=66.6
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
..+++--+...|.++|-+++..++.....+..... +....+++..+...--. -+..+.+.|..-+.++...+...++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 45555566778888999999999988888774433 11111111110000000 01123356777778888777766666
Q ss_pred HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 232 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
.. .+++.|++.+.+.++.........+......-+..
T Consensus 394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L 430 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL 430 (948)
T ss_pred HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH
Confidence 54 45667888887776665555555555555444433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0057 Score=33.32 Aligned_cols=28 Identities=39% Similarity=0.598 Sum_probs=25.3
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+|.+++++++++++||..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999974
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=47.16 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=108.2
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll 79 (363)
..|...|-.+++.++-..++... ..++..+++.| ++.+..++..|+++|..++...+.. +.+ .-++.+++..-
T Consensus 305 k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 305 KEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHHHHHH
Confidence 45666677777777644444332 23566777888 4588899999999999999654322 221 13456666666
Q ss_pred CCCCHHHHHHHHH-HHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 80 SSPHLNLAEQATW-ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 80 ~~~~~~v~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
.+.++++...|.. ++..++.+.|... |..+..++...+ ......++.++..++..-....-......+.|
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D-~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTAD-EPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCc-chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 6766666555554 4556666666532 223334444333 35555666677777766422122234567889
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
.+++..++....+|+.++.||..+.
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHH
Confidence 9999999999999999999999886
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=47.75 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=142.0
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHH
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLN 85 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~ 85 (363)
..|.+++.+....+....++...+..|+.+++|+|+..|.....+|..+-......|..++. .+...+.+++... ...
T Consensus 112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccccc
Confidence 34555555544322333566677888999999999999999999999987666667766653 4455666666533 334
Q ss_pred HHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 86 LAEQATWALGNIAGDGA-RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 86 v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
-...++.+++.+..+-. ..++.. ..-....++.+.....-.........++...+..+ +. ....++..++..=
T Consensus 191 gI~elLeil~sii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~----l~~~~i~~llk~W 264 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS----LAEPVIKGLLKHW 264 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG----GHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch----hHHHHHHHHHHhC
Confidence 45567777777775422 111111 11112333444444433455566667766666543 11 1122222222222
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc--CchH
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQ 242 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~l~ 242 (363)
-..++.=...-+.-+..+...-+...-.-+...++..+.+.+++++..|.+.|+..+. ++.....+.+. .++|
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~li~~~~~~i~p 339 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLSLISQNSRVILP 339 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHHHHHCTHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHHHHHhChHHHHH
Confidence 2244444445555566665443322111123355778888889999888888875443 33333222221 3666
Q ss_pred HHHHhhcC-----ChHhHHHHHHHHHHHHhcCCHHHHHH
Q psy10729 243 KMKKLLSS-----SRVNIVKEAAWTISNITAGNSRQIDH 276 (363)
Q Consensus 243 ~L~~~l~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~ 276 (363)
.+...+.. -+..++..|..++.-+...+++...+
T Consensus 340 ~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 340 IIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 66666532 36889999999999988877665443
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.18 Score=42.73 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~ 291 (363)
....|+..|.-++.-++.-+..+.+.+.+..|++++. ...+.++..+..+|..+...++.+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N------------------ 168 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN------------------ 168 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH------------------
Confidence 5666788888888766666677888899999999994 457889999999999988877665
Q ss_pred cccchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhcCCCccCcc
Q psy10729 292 VGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFNDSAENSI 342 (363)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~~~~~~~ 342 (363)
...+++.+|+..+..++.+. +.+++=++...+--|..++....+
T Consensus 169 -------~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~ 214 (257)
T PF08045_consen 169 -------QRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP 214 (257)
T ss_pred -------HHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence 35899999999999997655 688888888888877777655544
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=53.37 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh----CCCCchhHHHhh-cC-Ch
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA----GDGARARDLLLG-LG-TM 114 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~----~~~~~~~~~~~~-~g-~i 114 (363)
+.-++..|.+.++-+..+..-..+...-.+....++..+.+..-..+..+.|+++|+. .+.|..+..-.. .| .+
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 3345666777766666553333334444466667777777777889999999999997 333442222211 11 12
Q ss_pred HHHHHhhC--CCCcHhHHHHHHHHHHHhhcCCCCCCCH---HHHHhHHH-HHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 115 PQILALVQ--PNTPTTFLRNIVWAISNLCRNKNPAPDF---EKIKICLP-LLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 115 ~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~---~~~~~~i~-~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
..+...-. +.+...+..++..+|.|+.+--++-... ....+.+. .+....-....+++.++|.+++|+..+...
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 22333222 3344688999999999988654221111 11111111 111122235678999999999999876542
Q ss_pred hHHHHHhc----CChHHHHHhhc-CCChhhHHHHHHHHHHhhcC
Q psy10729 189 KIQAVVDT----GVVPRLVELLD-SEETTILTAALRTVGNIATG 227 (363)
Q Consensus 189 ~~~~~~~~----g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~ 227 (363)
. +.+. .+++.|..++. ..+-++|..|+.+|..-...
T Consensus 564 ~---lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 564 P---LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred c---ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 1 1222 24566666664 45778999999999877653
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.24 Score=46.79 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=84.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHH
Q psy10729 75 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 154 (363)
Q Consensus 75 l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 154 (363)
++...+ .+.+.+..|+..+..+..+-|... ..++..++.++++.+ ..++..+...|..+|.+.. ....
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~-----~~v~ 95 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP-----EHVS 95 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T-------T-HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH-----HHHh
Confidence 344444 357899999999999999988876 445789999999887 5899999999999999752 2456
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHH
Q psy10729 155 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD---SEETTILTAALRTVG 222 (363)
Q Consensus 155 ~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~---~~~~~v~~~a~~~L~ 222 (363)
.+...|+++|.++++.-...+=.+|..+...++.. .+..+...+. +.+..+|+.++..|.
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 77888999999998876666666666666444421 1344444443 456678888887775
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.16 Score=42.81 Aligned_cols=97 Identities=8% Similarity=0.112 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC-----hhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHH
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~-----~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ 246 (363)
.+|+..+-.++.+++. ...++++.+.-.+.++|+..+ +.+|-.++++++.++.. +++....+.+..++|.-++
T Consensus 68 cnaLaLlQ~vAshpet-r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVASHPET-RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH-TTT-HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHcChHH-HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 4566666677776654 477889998888888886543 24899999999999984 4567788889999999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.|+.++.-.|..|.+.+..+..++
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSH
T ss_pred HHHhccHHHHHHHHHHHHHHHcch
Confidence 999999888888999988887653
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.042 Score=52.09 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=104.5
Q ss_pred hHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCCh
Q psy10729 155 ICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 155 ~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.+-|.+.+...+ .|+.++..|--+|..+..-+.+... .-+|.++..+. +++|.+|..|.-.|+.++.+..
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555566554 7899999999999988765554322 23888998886 8899999999999999877654
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...+.. -..|..-+.+.+..|++.|.+++.++.... .+.--|-+.
T Consensus 967 ~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLilag------------------------------q~KVKGqlg 1011 (1128)
T COG5098 967 TTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAG------------------------------QLKVKGQLG 1011 (1128)
T ss_pred hhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHcc------------------------------ceeeccchh
Confidence 444433 345778888889999999999999986432 223335566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcCCCccC
Q psy10729 310 KLEALQHHENETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
.+..++.+++.++.+.|......+...++..
T Consensus 1012 ~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 1012 KMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred hhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence 6677777777777777777766666555443
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.23 Score=46.96 Aligned_cols=122 Identities=18% Similarity=0.167 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 119 (363)
.+...+..|+..+......-|.... .++..++.++.+.+..||.+|+..|-.+|.++++.... +.+.|+.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence 5688999999999999988888776 56788999999999999999999999999987765433 4588999
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc---cCChhhHHHHHHHHH
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH---TTDVETLSDICWALS 180 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---~~~~~v~~~al~~L~ 180 (363)
+|..+++ .-...+-++|..+...+ + .+.+..+...+. .++..+++.++..|.
T Consensus 104 lL~tdd~-~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDDP-VELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HTT---H-HHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHhcccH-HHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9997764 33444455555555443 1 223333333332 456667777776653
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.12 Score=40.81 Aligned_cols=146 Identities=9% Similarity=0.066 Sum_probs=90.5
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
..++.|+++| .+.++.+|.+++++||.+..-+|...+.+....- .- .-.+.+......... ..+.. +. -+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~~l~-~~~~~---~~-~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDISLP-MMGIS---PS-SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhhHHh-hccCC---Cc-hH
Confidence 4677888888 4567999999999999999777755543322111 00 001111111111111 11111 11 23
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
...-.-.+..|++.|++..-..-...++.++.++.... ..........++|.++..+...++..++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l-~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL-GLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-CcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33344567888998886654556667788888888664 33346677899999999999877788887777776654
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.5 Score=41.63 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=106.5
Q ss_pred CChHHHH-HhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh-hh
Q psy10729 112 GTMPQIL-ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DK 189 (363)
Q Consensus 112 g~i~~L~-~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~ 189 (363)
+.++.++ ..+++.+ ..++..++.||+-.|--+. ......++.+...++.+++.++..|+.++..+..... ..
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4444444 4555666 4999999999998887652 3445667888888877899999999999998873322 11
Q ss_pred HHHH-------HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh----cCChHhHHHH
Q psy10729 190 IQAV-------VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL----SSSRVNIVKE 258 (363)
Q Consensus 190 ~~~~-------~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l----~~~~~~v~~~ 258 (363)
.... -...++..+.+.+.+.+++++..|+..++.|.....-.. ...++..|+-.- ..++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 123567788888898999999999999999876442222 022333343333 2235678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy10729 259 AAWTISNITAGNSRQIDHVIQEGL 282 (363)
Q Consensus 259 a~~~L~nl~~~~~~~~~~~~~~~l 282 (363)
-.+.+-..+..++.+. ..+.+++
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f 198 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAF 198 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHH
Confidence 8888888888776653 3344333
|
|
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.17 Score=52.26 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC
Q psy10729 129 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208 (363)
Q Consensus 129 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~ 208 (363)
...++.|+...++...+- .....+++..++..+..+...+|..|++||..+...++.- +....+-..+..-+.+
T Consensus 793 d~~~a~li~~~la~~r~f---~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSF---SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLND 866 (1692)
T ss_pred cchhHHHHHHHHHhhhHH---HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhcc
Confidence 345666777777665421 1123456777888888888999999999999999777632 2222334445555667
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 209 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 209 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
....||+.|+..++..+...++...+ ....+..-+.++...||+.+...+..+|...+.
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 77889999999999888877766653 445588888888899999999999999976543
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.059 Score=52.73 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=112.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.++|.+++.....+...+..=+..|.++..+-|...-.---...+|.|++.|.-++..++.....++.-+....+... .
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~-t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ-T 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc-h
Confidence 788999999987777788888888888886655422111113578888999998999999999999988886655542 3
Q ss_pred HhhcCChHHHHHhhCCCCc--HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 108 LLGLGTMPQILALVQPNTP--TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
-.....+|.++.+=.+.++ ..++..++.||..|...-+...-......++..+...|.++..-+|+.|.++=
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 3336678888887775553 67899999999999985434444445567888899999888888988887653
|
|
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.1 Score=42.77 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC------C--CCHHHHHHHHHHHHHhh----CCCCchhHHHhhcCC
Q psy10729 46 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLS------S--PHLNLAEQATWALGNIA----GDGARARDLLLGLGT 113 (363)
Q Consensus 46 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~------~--~~~~v~~~a~~~L~nl~----~~~~~~~~~~~~~g~ 113 (363)
.+|..++..++... .+..+ .+.++.+...+. . .++.-++.|+..+++++ ..++ .+ -.++.-.
T Consensus 390 ~Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~~-~~mE~fl 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-YK-SQMEYFL 463 (1010)
T ss_pred HHHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-hH-HHHHHHH
Confidence 34666666666432 12222 255666666665 1 23567788999999987 2222 22 2222334
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHH
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQA 192 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~ 192 (363)
++.+...++++. .-++..+||.++..+.-+ .........++......|. +.+-.|+..|+.+|..+..+.+...+.
T Consensus 464 v~hVfP~f~s~~-g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 464 VNHVFPEFQSPY-GYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHhhHhhcCch-hHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 444555556665 489999999999999653 2333455677777777776 677789999999999998776643222
Q ss_pred HHh--cCChHHHHHhhcCCC
Q psy10729 193 VVD--TGVVPRLVELLDSEE 210 (363)
Q Consensus 193 ~~~--~g~l~~l~~lL~~~~ 210 (363)
+.. -+.++.++.+.+.-+
T Consensus 541 ~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcc
Confidence 221 134445555554433
|
|
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.21 Score=47.73 Aligned_cols=195 Identities=12% Similarity=0.059 Sum_probs=129.4
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
+..+++|.+++++...+ ..++-..+. ++-...+..........++|.+...+.+.++.++...+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~D-r~iR~~LL~---~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD-RQIRLLLLQ---YIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcc-hHHHHHHHH---hHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 44678899999999877 366655433 33333323334456678899999999999999999999998888744332
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+ .++..++..+.++-.+.+..+|....-+++.++....... .+.-....+...+.++-+.-|+.+.++++....
T Consensus 403 ~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 2 2334446666666666677899999999998876432211 222233445556777777778888888776654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 269 GNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
.-+.. =.....++.+..+.-+++..|+..|...++.|++..+...
T Consensus 477 ~~~~~----------------------------~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~~ 521 (690)
T KOG1243|consen 477 YFDQS----------------------------EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKVS 521 (690)
T ss_pred ccchh----------------------------hhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhhc
Confidence 32111 1122355667777888888899999888888887665553
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.32 Score=45.37 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=57.0
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-hcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 158 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 158 ~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
..+.+++.+.|+.++......++---.+... .|++..++.. .++.+.+||+.|.-+|+-+|..++.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc------
Confidence 3556666677776666555544322222111 2445555555 4566777888888888877764432
Q ss_pred HcCchHHHHHhh-cCChHhHHHHHHHHHHHHhcCC
Q psy10729 237 QAGGLQKMKKLL-SSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 237 ~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.++..+++| .+.++.||...+.+|+-.|+++
T Consensus 586 ---~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 586 ---LLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred ---hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 233344444 3456778877788888777764
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.53 Score=46.84 Aligned_cols=190 Identities=11% Similarity=0.037 Sum_probs=131.4
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
+.+.+..-+.++++.-+..++..+.-...... .....-..|.+-.++.+...+.+..+...++.+|..|+...... ..
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~ 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FR 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hH
Confidence 44455556667888888888888888876533 11111124455566666665656788888899999998865332 33
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND- 229 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~- 229 (363)
.......|.+...+....+.++..++.++-.++..... ....+.+...+.+.+|.++......+.......+
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 34567778888888888888888777777766653321 1336888899999999999998888777766443
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.....-.-.+.++.++....+.+.+||..|..++.-+...
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 2111111236788888888999999999999888877653
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.4 Score=39.90 Aligned_cols=240 Identities=15% Similarity=0.166 Sum_probs=129.3
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHH-HHHHHHhhCCCCchhH
Q psy10729 30 VPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQA-TWALGNIAGDGARARD 106 (363)
Q Consensus 30 l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a-~~~L~nl~~~~~~~~~ 106 (363)
+..+++-+. +....+|..++--|+.-+ .++.++..+...|.+..+++.+.+ ++..+...+ +.++.-++.+.+. -.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence 445555553 455678888888888888 479999999999999999999954 333243333 3344444444332 23
Q ss_pred HHhhcCChHHHHHhhC--CC-----C-c-------HhH----------------------------HHHHHHHHHHhhc-
Q psy10729 107 LLLGLGTMPQILALVQ--PN-----T-P-------TTF----------------------------LRNIVWAISNLCR- 142 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~--~~-----~-~-------~~~----------------------------~~~~~~~L~~l~~- 142 (363)
.+.+.+....++.++. .. + + ... +.-+..++..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 3334555555566665 10 0 0 001 1111122222210
Q ss_pred -------------CCCCCCCHHHHHhHHHHHHHhhc----cC------------ChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 143 -------------NKNPAPDFEKIKICLPLLNQLIH----TT------------DVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 143 -------------~~~~~~~~~~~~~~i~~l~~ll~----~~------------~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
..+...+.....|++..++..+. .. +......++++|-+.+..++.....+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 00011122233455666666654 11 11245567788888775555443444
Q ss_pred Hhc--CChHHHHHhh----cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh-------c-------CChH
Q psy10729 194 VDT--GVVPRLVELL----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-------S-------SSRV 253 (363)
Q Consensus 194 ~~~--g~l~~l~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-------~-------~~~~ 253 (363)
... +.++.+...+ ....+.+...+++.+.|++-+++..++.+...++...+..+. . ....
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF 340 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence 332 3333333322 222344578999999999988877666665543333322221 1 1124
Q ss_pred hHHHHHHHHHHHHhcCCH
Q psy10729 254 NIVKEAAWTISNITAGNS 271 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~~~ 271 (363)
+...-+..++.|++.+++
T Consensus 341 D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 341 DILILALGLLINLVEHSE 358 (361)
T ss_pred hHHHHHHHhHHHheeeCc
Confidence 556667888888887653
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG2611|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.1 Score=41.24 Aligned_cols=190 Identities=10% Similarity=0.070 Sum_probs=118.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCCC---hHhHHHHHhCCChHHHHHhcCCCC-------HHHHHHHHHHHHHhhCCC
Q psy10729 32 ICVELLDDENPNTQFEATWALTNIASGT---SEQTMTVINANAIPKFLQLLSSPH-------LNLAEQATWALGNIAGDG 101 (363)
Q Consensus 32 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~---~~~~~~i~~~~~i~~l~~ll~~~~-------~~v~~~a~~~L~nl~~~~ 101 (363)
-+..++...++.-+..|+.....+.... ...+..+.+.-+++.+-+++.+.+ .-.+..++.+|.-+|+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 3566677788888999999999998653 345566888888899999887432 23556677788888866
Q ss_pred CchhHHHhhcCChHHHHHhhCCCCcH------hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHH
Q psy10729 102 ARARDLLLGLGTMPQILALVQPNTPT------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175 (363)
Q Consensus 102 ~~~~~~~~~~g~i~~L~~ll~~~~~~------~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a 175 (363)
|+....-.--.-||.++.++....++ .+...+-.||..++..+ +........|.++.+.++-.-++...-...
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 54433322345789999999733322 37788888999999884 666777778999999877655443322222
Q ss_pred HHHHHHhc-----cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 176 CWALSYIS-----DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 176 l~~L~~l~-----~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.-.+.-+. ..+.. ...+.. ++..+..=....+...+-+.|..|..+..
T Consensus 173 al~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 21222111 11111 122211 13333333334455677788888886554
|
|
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.16 Score=48.36 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=148.4
Q ss_pred HHHHHcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 22 DELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
+.++...+++.|+..+...+ ..-....+.-++..... .+ .+.+++|.++++...++..+|-..+.-+-.+..+
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~ 360 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH 360 (690)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh
Confidence 55667777777777774333 21122222223333312 22 4568999999999999998987777766666644
Q ss_pred CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHH
Q psy10729 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180 (363)
Q Consensus 101 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~ 180 (363)
..+.+....++|.+...+.+.+ ..++..++.++..|+..-+.. ....+.+..+..+-.++++.++.+..-|++
T Consensus 361 ---Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~~---~Ln~Ellr~~ar~q~d~~~~irtntticlg 433 (690)
T KOG1243|consen 361 ---LTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSKR---NLNGELLRYLARLQPDEHGGIRTNTTICLG 433 (690)
T ss_pred ---cCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhchh---hhcHHHHHHHHhhCccccCcccccceeeec
Confidence 4456677889999999999888 489999999998888754322 233556666766666678889999999999
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHH
Q psy10729 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260 (363)
Q Consensus 181 ~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 260 (363)
.++....... .+.-...++.+-+.++-..-|..+.+++.......+. .=+...++|.+....-+++..++..|-
T Consensus 434 ki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 434 KIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred ccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHH
Confidence 9986644321 2222334445556666667788888888766543221 122246777787777777777777666
Q ss_pred HHHHHH
Q psy10729 261 WTISNI 266 (363)
Q Consensus 261 ~~L~nl 266 (363)
.++.-.
T Consensus 508 ~~i~~f 513 (690)
T KOG1243|consen 508 KAIRQF 513 (690)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.088 Score=35.11 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.+.++|+++++...+.. ...+.+.++++.++++..+ +...+|-.+.++|+-++. ..+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 57899999999876554 4666677999999999864 566899999999998876 5666666666553
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.35 Score=38.86 Aligned_cols=144 Identities=11% Similarity=0.055 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCC-ChH----hHHHHHhCC------C-hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh-
Q psy10729 44 TQFEATWALTNIASG-TSE----QTMTVINAN------A-IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG- 110 (363)
Q Consensus 44 i~~~a~~~L~~l~~~-~~~----~~~~i~~~~------~-i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~- 110 (363)
+|..|+.+|..++.. ++. +-..++..+ . .+.+.-++.++++++|..|+.++..|..+...+-....+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888754 221 111222222 2 334455567899999999999999997653222111111
Q ss_pred ------------------cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHHhhccCChhh
Q psy10729 111 ------------------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTDVET 171 (363)
Q Consensus 111 ------------------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~v 171 (363)
...-..|+..+..+.+..+....+.++..+...-.-. ........++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1123345555665655678889999999999876322 234455677788888889999999
Q ss_pred HHHHHHHHHHhccCCh
Q psy10729 172 LSDICWALSYISDGHN 187 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~ 187 (363)
+..++.+++.+....+
T Consensus 162 ~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 162 RVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999998875543
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.8 Score=41.92 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=138.5
Q ss_pred HHHHHcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC----CCC----HHHHH
Q psy10729 22 DELIEAGVVPICVELLDD-----ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS----SPH----LNLAE 88 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~----~~~----~~v~~ 88 (363)
..+.+.|++..++.++.+ .+.......+..|...+ .-+.+|..+++.++++.|++.+. .+. +.+.+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 345667999999999943 23455666777777777 56899999999999999988874 333 56777
Q ss_pred HHHHHHHHhhCCCCc--h--hHHHhh--------cCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhcCCCCCCCHHHH
Q psy10729 89 QATWALGNIAGDGAR--A--RDLLLG--------LGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKI 153 (363)
Q Consensus 89 ~a~~~L~nl~~~~~~--~--~~~~~~--------~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 153 (363)
..+.++..+..+... . -..... ...+..+++.+... .+..+....+.+|.+|+.+.. ...
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~-----e~m 264 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE-----EKM 264 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH-----HHH
Confidence 777777766533111 0 001011 11366677766633 246888999999999999863 222
Q ss_pred HhHHHHHHHhhccC--C---hhhHHHHHHHHHHhccCC------hhhHHHHHhcCChHHHHHhhcCCChh----------
Q psy10729 154 KICLPLLNQLIHTT--D---VETLSDICWALSYISDGH------NDKIQAVVDTGVVPRLVELLDSEETT---------- 212 (363)
Q Consensus 154 ~~~i~~l~~ll~~~--~---~~v~~~al~~L~~l~~~~------~~~~~~~~~~g~l~~l~~lL~~~~~~---------- 212 (363)
..++..+...++-+ | ..--...+.++..++.+- ...++.+++.|++...++.|...-|.
T Consensus 265 ~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk 344 (802)
T PF13764_consen 265 DALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK 344 (802)
T ss_pred HHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence 33344444433221 1 000122244444444221 24467788999999888888543221
Q ss_pred ------hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC-C-hHhHHHHHHHHHHHHhc
Q psy10729 213 ------ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-S-RVNIVKEAAWTISNITA 268 (363)
Q Consensus 213 ------v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~-~~~v~~~a~~~L~nl~~ 268 (363)
-...++..|.-++.+.... +..+..++++ ++..|.. . +.++-..|--+|-.+..
T Consensus 345 ~~l~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 345 EFLSRPSLPYILRLLRGLARGHEPT-QLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHhcCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345667777777654433 3345556663 3344432 2 33444444444444444
|
|
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.7 Score=41.97 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
..+.+.++..+..+-..+++. + ...|.+..+++-....+ ..++..++..|+.+.... .........++...+..-
T Consensus 60 dRIl~fla~fv~sl~q~d~e~-D--lV~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~R 134 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEE-D--LVAGTFYHLLRGTESKD-KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIR 134 (892)
T ss_pred HHHHHHHHHHHHhhhccCchh-h--HHHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHH
Confidence 456666666666665433331 2 22455666666666666 489999999999988754 444555667788888888
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHH
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGN 223 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~n 223 (363)
+.+..|.++..|+.+|+.+...+.+. +..+...+..+++ +++++||..|+..+.+
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 88899999999999999998433221 1234566666664 4678899988765543
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.36 Score=48.00 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=126.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc----CCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
.+.+.+...+.++++.-+..|+.-+..+..... .....+....+..++ .+.+..+...++.+|..++.....
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 334445555578999999999999999885432 222234444333333 366778888999999999854333
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
. ..-...+.+|.++.-+.... ..++..+..++-.++.. .......+.+...+.+.+|.++..+...+....
T Consensus 329 ~-~~~~~~~v~p~lld~lkekk-~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 329 L-FRKYAKNVFPSLLDRLKEKK-SELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKL 399 (815)
T ss_pred h-hHHHHHhhcchHHHHhhhcc-HHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 2 12223678888888887655 36676666666555542 234667888999999999999988777776665
Q ss_pred cCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 184 DGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 184 ~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
...+ .....---.+++|.++....+.+.+||..|..+++.+..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 4433 111111223668889999999999999999999998876
|
|
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.25 Score=47.47 Aligned_cols=184 Identities=18% Similarity=0.220 Sum_probs=114.5
Q ss_pred HHHHHHHHhhcCCCCCcHHHH-----------HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCCh
Q psy10729 4 IATRSARKMLSKERHPPIDEL-----------IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~-----------~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i 72 (363)
+|...++.+...++++.+..= .+++.=+.+-+++.+.++-+|...+..+..-=.+... .++|
T Consensus 484 eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkai 556 (929)
T KOG2062|consen 484 EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAI 556 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhH
Confidence 445556666555554432211 1222333344445777888888777766543222221 2567
Q ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 73 PKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 73 ~~l~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
..|+.. ..+.+.+|++.|+.+|+-++..+|+. .|..+.+|....+..++.-++.+|.--|.+...
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----- 622 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----- 622 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-----
Confidence 777777 67888999999999999999887763 467788887665578999999999988887643
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 211 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~ 211 (363)
...+..|-.+.+++..-||..|+-+++-+.....+.... .-.++...+.+.+.+...
T Consensus 623 --~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p-kv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 623 --KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP-KVNGFRKQLEKVINDKHE 679 (929)
T ss_pred --HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHhhhhhh
Confidence 345555666666666678888888887775322211000 012334555566654433
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.47 Score=46.78 Aligned_cols=197 Identities=18% Similarity=0.182 Sum_probs=121.1
Q ss_pred HHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHH--HHHHHhhccCCh-
Q psy10729 93 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--PLLNQLIHTTDV- 169 (363)
Q Consensus 93 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~ll~~~~~- 169 (363)
+++++....+..-..+.+.|+...+..+++..+..++...+...+.+++...+..... .....+ ..+..++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~-~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELL-MIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhhcchh
Confidence 6678888888877889999999999999996677899999999999999875322221 111111 233344444444
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHH-HHHh
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQK-MKKL 247 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~-L~~~ 247 (363)
+.-..++..+..+....+.. ...+ .+..+...+...... .......... ..+.. +..+
T Consensus 573 ersY~~~siLa~ll~~~~~~----~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~i 632 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKT----TECV---------------FRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRI 632 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcC----cccc---------------chHHHHHHHHHHhhccCccceeehhh-hhcchhHHHH
Confidence 77778888888877655431 1111 122222222222221 1111111222 22222 4445
Q ss_pred hc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhc-CCcHHHHHH
Q psy10729 248 LS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQH-HENETVYQK 325 (363)
Q Consensus 248 l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~ 325 (363)
+. +..+.....|.|++.+++..+++. +..+.+.|++..+.++-. +...++.+.
T Consensus 633 l~~s~~~g~~lWal~ti~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (699)
T KOG3665|consen 633 LRLSKSDGSQLWALWTIKNVLEQNKEY-------------------------CKLVRESNGFELIENIRVLSEVVDVKEE 687 (699)
T ss_pred hcccCCCchHHHHHHHHHHHHHcChhh-------------------------hhhhHhccchhhhhhcchhHHHHHHHHH
Confidence 54 346788999999999999876554 467888888888887632 225667777
Q ss_pred HHHHHHhhcC
Q psy10729 326 CYKIISMAFN 335 (363)
Q Consensus 326 a~~~l~~~~~ 335 (363)
+...+..+..
T Consensus 688 ~~~~i~~~~~ 697 (699)
T KOG3665|consen 688 AVLVIESCEN 697 (699)
T ss_pred HHHHhhcccc
Confidence 7777766543
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.09 Score=35.07 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcC
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLG 112 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 112 (363)
...|+|+++++++ .+.....+.+.++++.++++.. ++...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4689999999995 5666666777899999999987 55678999999999999865 44555555443
|
|
| >KOG1949|consensus | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.2 Score=42.87 Aligned_cols=236 Identities=9% Similarity=0.045 Sum_probs=132.4
Q ss_pred HHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCC--hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh-CC
Q psy10729 25 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGT--SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GD 100 (363)
Q Consensus 25 ~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~-~~ 100 (363)
++.|+++.++.-- ..+.+.+....-.+|+.+.... .+..+.++-.-.=|.+.+-|+-++..|+.+|+..+.++. ..
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 5556666554433 3333333333334555554211 111222221122344556667788999999999999997 22
Q ss_pred CCch----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-ccCChhhHHHH
Q psy10729 101 GARA----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDI 175 (363)
Q Consensus 101 ~~~~----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~a 175 (363)
+|.. .+.++ ..-+..|..+|+++-+ .++..+...+..+.+.-...........++..+..-+ .....+++...
T Consensus 206 dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p-~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~sv 283 (1005)
T KOG1949|consen 206 DPDLHAEEMDSII-QKQFEELYSLLEDPYP-MVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSV 283 (1005)
T ss_pred CCCccHHHHHHHH-HHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhH
Confidence 2332 12222 3456778888988774 7888777666655543222222222333344433323 33556889999
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 255 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 255 (363)
...|..+..++-. ..+++.+ +|++-..|.+...+||-.+...|..+=.. ..-.+.+-=-.+.++..|..++..+
T Consensus 284 f~gl~~~l~np~s--h~~le~~-Lpal~~~l~D~se~VRvA~vd~ll~ik~v---ra~~f~~I~~~d~~l~~L~~d~~~v 357 (1005)
T KOG1949|consen 284 FKGLPMILDNPLS--HPLLEQL-LPALRYSLHDNSEKVRVAFVDMLLKIKAV---RAAKFWKICPMDHILVRLETDSRPV 357 (1005)
T ss_pred hcCcHHHHcCccc--hhHHHHH-HHhcchhhhccchhHHHHHHHHHHHHHhh---hhhhhhccccHHHHHHHHhccccHH
Confidence 9999998876653 2334444 67777788888889999988888876321 1122222223344555566666666
Q ss_pred HHHHHHHHHHHhc
Q psy10729 256 VKEAAWTISNITA 268 (363)
Q Consensus 256 ~~~a~~~L~nl~~ 268 (363)
.+.-+..|.+.+.
T Consensus 358 ~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 358 SRRLVSLIFNSFL 370 (1005)
T ss_pred HHHHHHHHHHhhc
Confidence 6666666666554
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.76 Score=45.38 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=119.5
Q ss_pred HHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH--HHHHhhCCCCcH
Q psy10729 51 ALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMP--QILALVQPNTPT 127 (363)
Q Consensus 51 ~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~ll~~~~~~ 127 (363)
+|.++...+++....+++.++...+..+++.- ..++...++..++|++...+ .+..+.....+. .+-.++...+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 77788888999999999999999999999854 46888999999999996532 222332222222 333344444434
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH-HHHhh
Q psy10729 128 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR-LVELL 206 (363)
Q Consensus 128 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~-l~~lL 206 (363)
+.-..++..|+.+..+.+..........+-..+.+ ++...... ....... ..+.. +.+++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e---------------~i~~~~~~---~~~~~~~-~~f~~~~~~il 633 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVE---------------AISRWLTS---EIRVIND-RSFFPRILRIL 633 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHH---------------HhhccCcc---ceeehhh-hhcchhHHHHh
Confidence 66777777888777765432222221222222222 22222111 1111111 12222 44444
Q ss_pred c-CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHH
Q psy10729 207 D-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTIS 264 (363)
Q Consensus 207 ~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~ 264 (363)
. +..+....+|+|++.+++..++++.+.+.+.++++.+.+.-... ..+++..+...+.
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 3 34567899999999999998888888899999999888776443 4455555554443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.49 Score=44.22 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=104.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh-cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 32 ICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 32 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
.+-+++.+.++-+|...+..++.--.+.. +.+++..++.. ..+.+.+|++.|+.+|+-+|.+++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 34455566777777777666654322222 23678888887 6788899999999999999977554
Q ss_pred cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH
Q psy10729 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190 (363)
Q Consensus 111 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 190 (363)
.++..+++|....+..++.-.+.+|.--|.+... ...+..|-.++.++..-++..|+-+++-+.....+..
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3566778887666668888888888888877643 3345556677778888899999999888864333221
Q ss_pred HHHHhcCChHHHHHhhcCCC
Q psy10729 191 QAVVDTGVVPRLVELLDSEE 210 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~ 210 (363)
..-+ .++...+.+.+.+..
T Consensus 657 np~v-~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV-KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH-HHHHHHHHHHHhhhh
Confidence 1111 245666777775543
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.36 Score=39.20 Aligned_cols=147 Identities=20% Similarity=0.183 Sum_probs=100.0
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcC---ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATG---NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
.++.++++..+++..++..|+..+.-+... +|. ..+|.++.+..++++.++..|...+..+....+..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 367888888899999999999999988762 232 357889999999999999999999999998777766
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc-----cCcc-------
Q psy10729 275 DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA-----ENSI------- 342 (363)
Q Consensus 275 ~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~-----~~~~------- 342 (363)
..-..+|+..-+..-..+.........-...-++..+..+.. ++..-|++-...+-+.|..+. ++..
T Consensus 81 ~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~ 159 (187)
T PF12830_consen 81 ESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLL 159 (187)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence 655556766665544433221110000003335566666666 666777777777777776664 1111
Q ss_pred ---CCCCccccCCC
Q psy10729 343 ---ENGDTIEFNPQ 353 (363)
Q Consensus 343 ---~~~~~~~~~~~ 353 (363)
|++..|.|.+.
T Consensus 160 Fla~nLA~l~y~~~ 173 (187)
T PF12830_consen 160 FLAENLATLPYQTQ 173 (187)
T ss_pred HHHHHHhcCCCCCh
Confidence 77777777653
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.45 Score=43.60 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=67.5
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcC--ChhHHHHHHHcCc
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATG--NDHQTDCVIQAGG 240 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~ 240 (363)
..+++..++..|+++|++.+++.+........ -.+..++.-| ...+.+|..++..+|..+... +.+....++ ++
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--NI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--hH
Confidence 34466789999999999999996655444332 2355555544 444677999999988887642 111111111 23
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.-.+..+..+.+++++..|...++.++.
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 4456667778889999998888888775
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.66 E-value=4 Score=38.48 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC------ChhhHHHHHHHHHHhhcCChhH-HHHHHHc--Cc
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE------ETTILTAALRTVGNIATGNDHQ-TDCVIQA--GG 240 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~------~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~--~~ 240 (363)
++...+..++.||+...-.. -.+..+..+|.++ +..+..-|+..+..+..+.... ...+--. -+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 55666777777777544322 1256777777322 3456778999999887765222 1111111 27
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
++.|...++.+++.+-.+....+.++.
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 788888888887777777777777776
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.2 Score=35.28 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=58.5
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
+...+..+.++.+.+|.+++..|..+..... ....--.+++..+...++++++-|--.|+..|..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4566777888999999999999999998655 12222346788889999999999999999999999987655
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.4 Score=45.87 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=119.0
Q ss_pred ChHHHHHhcCC----CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC
Q psy10729 71 AIPKFLQLLSS----PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 71 ~i~~l~~ll~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 146 (363)
+-|.+.....+ .++.++..|.-+|..+..-+.+. -..-+|.++..+...+.+.++.+++-.|+.++..-+.
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f-----c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF-----CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34444555544 56888888888888775332221 2456799999998554468999999888887765432
Q ss_pred CCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 147 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 147 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.....-.++..-|.+.+..+++.++-++.++.-...- .-.|-++.++.+|.+++.++...|-..+..++.
T Consensus 968 -----~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 -----TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -----hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 2234456677888889999999999999999754432 225789999999999999999988888888887
Q ss_pred CChhHHHHHHHcCchHHHHHhhcC---ChHhHHHHHHHHHHHHhcC
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~nl~~~ 269 (363)
...... +|+++.+..+-.+ ++... +.....|..+...
T Consensus 1038 KdNt~y-----n~fidifs~ls~~ae~g~e~f-k~II~FLt~fI~k 1077 (1128)
T COG5098 1038 KDNTMY-----NGFIDIFSTLSSDAENGQEPF-KLIIGFLTDFISK 1077 (1128)
T ss_pred cccchh-----hhhHHHHHHcCchhhcCCCcH-HHHHHHHHHHHHH
Confidence 443222 3555555544422 22222 3344445555443
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.87 Score=33.86 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q psy10729 215 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 294 (363)
.....-|.+++..+...... +.+.|.+-|++.++.|+..+..+|..++...++....-+..-.
T Consensus 19 gy~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~------------ 81 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS------------ 81 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH------------
Confidence 34444556666665555543 4556999999999999999999999999864433221111000
Q ss_pred chHHHHHHHHcCc-HHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 295 LNQMALLVEESGG-LEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 295 ~~~~~~~l~~~~~-~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
.....+.+..| .+.+.. ..++..||..|..++.-.|.++
T Consensus 82 --~~Ik~~~~f~g~~Dp~~G--d~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 82 --AQIRECANYKGPPDPLKG--DSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred --HHHHHHHHcCCCCCcccC--cchhHHHHHHHHHHHHHHhccC
Confidence 01112222222 333332 5567889999999999998875
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.61 Score=42.27 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=89.7
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhH-HHHHHHhhc------cCChhhHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-LPLLNQLIH------TTDVETLSDICWAL 179 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~-i~~l~~ll~------~~~~~v~~~al~~L 179 (363)
...+..-..++-+-+...+...-++.|+..+..|+.... ....+. ...+..++. ..+..-+..|+..+
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-----~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li 279 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE-----KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLI 279 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHH
Confidence 444566667777777654545678888889999987531 111222 233444444 24566778899999
Q ss_pred HHhccCChh------------hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 180 SYISDGHND------------KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 180 ~~l~~~~~~------------~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
+.++..... ....++..-++|.|. --.+..|-++..|++.+...-..-+. +.+. ++++.++..
T Consensus 280 ~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~ 354 (370)
T PF08506_consen 280 GALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNH 354 (370)
T ss_dssp HHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHH
T ss_pred HHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHH
Confidence 999855431 123444445556554 11234566899999999987553222 2233 589999999
Q ss_pred hcCChHhHHHHHHHHH
Q psy10729 248 LSSSRVNIVKEAAWTI 263 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L 263 (363)
|.+++.-|+.+|+.++
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 9999999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.29 E-value=3.6 Score=39.00 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc--C
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--G 227 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~--~ 227 (363)
.....+++..+...+.+.|..++..++.+|..++..-.+. ...+-.|++..+.+-+-+..+.||..|+.+|+.+-. .
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 3456788888888889999999999999999998655443 444556788888888888888999999999998743 2
Q ss_pred ChhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHhc
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~~ 268 (363)
+++. .....|..++++ ++.+|++.| +.|+..
T Consensus 165 neen-------~~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 165 NEEN-------RIVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred ChHH-------HHHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 2222 123356666654 578888865 445544
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.2 Score=37.10 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=138.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc----CC-------CChhHHHHHHHHHHHhcCCChHhHHHHHhCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL----DD-------ENPNTQFEATWALTNIASGTSEQTMTVINAN 70 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL----~~-------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~ 70 (363)
|..|..+|.+.+...++.+-...+. .-++.+++.+ .+ .+..+..+|+++|+.+. .++.....+-+..
T Consensus 10 r~daY~~l~~~l~~~~~~~~~~~l~-~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l-~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 10 RLDAYMTLNNALKAYDNLPDRQALQ-DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFL-YHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHH-ccHHHHhhCChHH
Confidence 5678888888887766554443332 3355555555 22 35678899999999998 4565555443322
Q ss_pred ---ChHHHHHhcCCCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---C-CCcHhHHHHHHHHHHHhh
Q psy10729 71 ---AIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---P-NTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 71 ---~i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~-~~~~~~~~~~~~~L~~l~ 141 (363)
++...+..+.+++ ..+....+|+|..=-.. + .++....+..++..+. + -.+..+....+.++.++.
T Consensus 88 ~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-P----KIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-C----cccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 3455556665443 46666777777654322 2 2333334444444443 1 333567777888888887
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc--cCChhh----HHHHHhcC---------ChHHHHHhh
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS--DGHNDK----IQAVVDTG---------VVPRLVELL 206 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~--~~~~~~----~~~~~~~g---------~l~~l~~lL 206 (363)
... +..........+|.+...+-+....++..|..++..+. -+++.. .....+.. +.+.+.+++
T Consensus 163 ~q~-p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi 241 (372)
T PF12231_consen 163 SQF-PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMI 241 (372)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 754 22222233447788877777777777776665554443 121111 11112222 223355566
Q ss_pred cCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 207 DSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.+++......-+|...-+..+++. ..-... +..+...-..++++++.+|..|..+-..+..
T Consensus 242 ~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 242 KSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 553333333333333333333321 111111 2344445555677888899888777776654
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=94.13 E-value=3.4 Score=35.54 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=124.3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC--CCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 33 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
|=..|.++++.+|..|+.+|..+...-+... +...-+..++.+..+ .+......++.++..+.....-.... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--A 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--H
Confidence 4567788999999999999999876544221 222334444444432 23344444566666666332211111 1
Q ss_pred cCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChh
Q psy10729 111 LGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 111 ~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~ 188 (363)
...+..+..-.. .......|..+...+..+..+..... .....+++..+++.++. .||.-...+...+..+....+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 122233332222 11224667777778877776532111 11224567777777776 5788777777777777644431
Q ss_pred hHHHHHhcCChHHHHHhhc---------CC-Ch-h-hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHH
Q psy10729 189 KIQAVVDTGVVPRLVELLD---------SE-ET-T-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~---------~~-~~-~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 256 (363)
....+.+.+.+. .+ +| . .+..--.+|.+....++.... -.+|.|++-|.++.+.++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence 112333333331 11 22 2 344444455554444554443 578889999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy10729 257 KEAAWTISNITAG 269 (363)
Q Consensus 257 ~~a~~~L~nl~~~ 269 (363)
..+..+|...+..
T Consensus 226 ~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 226 LDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
|
| >KOG2999|consensus | Back alignment and domain information |
|---|
Probab=94.04 E-value=2.7 Score=39.35 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=112.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc---HhHHHHHHHHHHHhhcCCCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~---~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
...+...+.+++..-+..+..-+..++.+ +.....++...++..|..++.+++. .++....+.+++.+-.+.-..-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 44567777777777776788889999876 6677888889999999999986653 3555666666666555432111
Q ss_pred CHHHHHhHHHHHHHhh--ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 149 DFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.. ....++..+..+. +..+..+...|+..+-++..+++.....+.+.--+..+++.++..+..+...|...+..+..
T Consensus 164 ~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred ee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 11 1122333333333 23456688899999999998888666777777789999999999999998888888888776
Q ss_pred CCh-hHHHHHH
Q psy10729 227 GND-HQTDCVI 236 (363)
Q Consensus 227 ~~~-~~~~~l~ 236 (363)
..+ ..++.+.
T Consensus 243 ~a~~~~R~~~~ 253 (713)
T KOG2999|consen 243 KAPDDKRFEMA 253 (713)
T ss_pred hCChHHHHHHH
Confidence 443 3333343
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=12 Score=41.20 Aligned_cols=264 Identities=14% Similarity=0.054 Sum_probs=141.6
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHH-hcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTN-IASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~-l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
.|+..|...+..++ .....+ +...+-..+..| +=++......|+..|.. ++ ..+..+..+-..++-..+-.+-+-
T Consensus 225 ~aa~~la~~l~~~~-~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKw 301 (2710)
T PRK14707 225 NAVSALAERLADES-RLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKW 301 (2710)
T ss_pred HHHHHHHHHHcCcH-HHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcC
Confidence 35555555555553 222222 223344444444 44555455555554444 44 455555555444444455555556
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++.++-..++..|..=..+++..++.+- ...+...++-|. =++.......+...-..++.+.+-... ....++-..|
T Consensus 302 pd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~l 379 (2710)
T PRK14707 302 ADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVL 379 (2710)
T ss_pred CCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHH
Confidence 6766666555555554445676654443 334444445444 334345555555555667766532222 2223333333
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.-+-+=++......+...|..-..++.+..+.+-..|+-..|.-+-+=++..+...+...|.--..++.+.++.+--.++
T Consensus 380 NalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~v 459 (2710)
T PRK14707 380 NALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINV 459 (2710)
T ss_pred hhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHH
Confidence 33333366666666666666555566555566555665555555556677778888888888777767666543333333
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
...|--+-+-++..+...|+..|.--....++
T Consensus 460 a~~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 460 TQALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 33333333556767777777777665554444
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.68 Score=36.74 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=78.7
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhc--CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL--GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
..+..+..+++++++.-+..++..+.-.+..++ .+.+... ..+..++.+++.+++..+.+.++.++..|.......
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445667888889888888888888888886643 2444333 368888999998887888999999999888765444
Q ss_pred CCHHH------HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 148 PDFEK------IKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 148 ~~~~~------~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.... ...+++.++.+++. ......++.++..+....+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 44322 23445555555554 5566777777777765544
|
|
| >KOG2999|consensus | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.2 Score=41.53 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC----HHHHHHHHHHHHHhhCCCCchh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~----~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
...+++.+.+++..-+..|+..|..++. +......++...++..|.+++.+.. ..+...++.++..+-.+.-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567888888888888889999999994 5778888899999999999998765 4667777777777765432211
Q ss_pred HHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 106 DLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
..+ ...++..+..+.. ...+..+...++..|-++..+++.....+...--+..++..++..+..++..|...+..+..
T Consensus 164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111 1223344444443 22224567778888888888765444555555667888999999999988888888887774
Q ss_pred CCh
Q psy10729 185 GHN 187 (363)
Q Consensus 185 ~~~ 187 (363)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 443
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.71 E-value=7.5 Score=38.03 Aligned_cols=115 Identities=9% Similarity=0.034 Sum_probs=73.9
Q ss_pred cCChHHHHHhhC----CC---CcHhHHHHHHHHHHHhhc--CCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHH
Q psy10729 111 LGTMPQILALVQ----PN---TPTTFLRNIVWAISNLCR--NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 181 (363)
Q Consensus 111 ~g~i~~L~~ll~----~~---~~~~~~~~~~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~ 181 (363)
.|+++.+..++. .+ ++..-.+-+.+.++++.+ .......-....-+++.+...++++-.-++..+|..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 689999999994 11 222333445566666555 221111112223445666667777777789999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
+...-++. .+-..+.+....++++.+-.|+..|+.++.-+..++
T Consensus 487 ~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 96444332 122244677778888888889999999999888754
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.63 E-value=6.5 Score=37.08 Aligned_cols=244 Identities=14% Similarity=0.179 Sum_probs=136.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+.+|++.+...+..-.-..+. .+...--.++. ....+.|..++..|..+...+..... .... .+...+.
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~-----~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~----~fF~~I~ 76 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIE-----EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRA----EFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHH-----HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHH----HHHHHHh
Confidence 457777777776654432222 24455556664 44667999999999998866443111 1111 1222223
Q ss_pred -CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC--------------------------cHhHHHHH
Q psy10729 81 -SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--------------------------PTTFLRNI 133 (363)
Q Consensus 81 -~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------------------------~~~~~~~~ 133 (363)
...++....-+.+|..|+.++... ...+.+..|.|..-+.... ........
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 333444455677777787665554 2245677777766553110 12344555
Q ss_pred HHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC--CC
Q psy10729 134 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EE 210 (363)
Q Consensus 134 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~--~~ 210 (363)
...+.++..............+++..+..+... .++.....++..+-.+..+..-- .+.++.++..|-+ ..
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP------~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP------SESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC------hHHHHHHHHHHhhHhcc
Confidence 666667766654445555666777776666543 44455566666666555332211 0113333333321 22
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhcCC
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~~~ 270 (363)
.+....+-.++.||+...-.. ..+..|..+|.+ .+..+.+.|+..+..+..+.
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 267778888999998743222 234557777732 24566678888888887765
|
|
| >KOG2137|consensus | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.42 Score=45.91 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=98.8
Q ss_pred hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 68 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
...++|.|...+++.+..+++.++..+..++..-+ -.++...++|.+..+.-...+..++.+++-|+..+.+.-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--- 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence 44677888888888899999999999999985533 245557788999888666666789999999999888432
Q ss_pred CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh
Q psy10729 148 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 211 (363)
Q Consensus 148 ~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~ 211 (363)
+.....+.+..+....+..+|.+....+++..++....... ..++...++|.++.+...+.-
T Consensus 461 -D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 -DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred -HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 11223344555666667789999998888888887554432 334556778888888876643
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.49 E-value=7.1 Score=38.15 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=130.8
Q ss_pred CcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy10729 19 PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98 (363)
Q Consensus 19 ~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~ 98 (363)
.+..-+.+.=+++-++..++++.--++..|+..+..+.. +..+..+-..+.+....++++.+-.++-.|+-++.-+.
T Consensus 451 sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi 527 (970)
T COG5656 451 SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFI 527 (970)
T ss_pred chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 445556666677777777788888889999999998853 34444444566777788888888888889999998888
Q ss_pred CCCCchhHHHhhcCChHHHHHhhC--CCCcHhHHHHHHHHH-HHhhcCCCCCCCHHHH----HhHHHHHHHhhccCC---
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQ--PNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKI----KICLPLLNQLIHTTD--- 168 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L-~~l~~~~~~~~~~~~~----~~~i~~l~~ll~~~~--- 168 (363)
.+. .....+ .....+.+-++|. +.-..+....++..+ ...+..-.+.. .... ..+++....++..++
T Consensus 528 ~~~-q~h~k~-sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa-~eLa~~Lv~qFlkiaq~l~ens~d~~ 604 (970)
T COG5656 528 FNE-QSHEKF-SAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFA-PELAGSLVRQFLKIAQSLLENSSDTS 604 (970)
T ss_pred hch-hhhHHH-HhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhH-HHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 764 332333 2333333444444 222234444444332 22222211111 1111 223333344443321
Q ss_pred ---hhhHHHHHHHHHHhc-----cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 169 ---VETLSDICWALSYIS-----DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 169 ---~~v~~~al~~L~~l~-----~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.+-+..|.+.|.-+. -.+....-.-......|.+--.+.+.-.++-.+|+..+-+.+-...+..... -|+
T Consensus 605 s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pim--wgi 682 (970)
T COG5656 605 SVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIM--WGI 682 (970)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhh--hHH
Confidence 112333444443332 1111111111223444555445566666777888887777654333322212 266
Q ss_pred hHHHHHhhcCCh-HhHHHHHHHHHHHHhcC
Q psy10729 241 LQKMKKLLSSSR-VNIVKEAAWTISNITAG 269 (363)
Q Consensus 241 l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~ 269 (363)
.+.+.+++.+.. ...-.+++-++.|+...
T Consensus 683 ~Ell~~~l~~~~t~~y~ee~~~al~nfity 712 (970)
T COG5656 683 FELLLNLLIDEITAVYSEEVADALDNFITY 712 (970)
T ss_pred HHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence 666777776654 35566777888887753
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=16 Score=40.40 Aligned_cols=284 Identities=11% Similarity=0.003 Sum_probs=148.0
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
|+.+|..-+..+. ...+. .+...+...+..| +=++..+...++..|.--..++.+.+..+-..++...|-.+-+=|+
T Consensus 394 aa~~LA~~l~~d~-~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd 471 (2710)
T PRK14707 394 AASALAEHVVDDL-ELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPD 471 (2710)
T ss_pred HHHHHHHHhccCh-hhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCC
Confidence 4445555444332 22233 3334444444555 6677888888888887766577777766555555555555555566
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
..+-..++..|..=..+.++.++.+-..++...|-.+=+-++.......+.|+-..+.... .........++.-.+--+
T Consensus 472 ~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-~l~~~~~~~~~~~~lnal 550 (2710)
T PRK14707 472 TPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-QLRKAFDAHQVVNTLKAL 550 (2710)
T ss_pred ChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-hhhhhhhhHHHHHHHHhh
Confidence 6666555655555444556666666555555555555555665566777777777776543 222222223333334444
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChh-hHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
-+.++......+...|.......+..... ++.--+..+++-|+ -++.. .+..+.+.-..+.. .+..... ++...+
T Consensus 551 SKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~-l~~q~l 627 (2710)
T PRK14707 551 SKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKE-LDPVDV 627 (2710)
T ss_pred hcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhh-ccHHHH
Confidence 44566565555555666554444333233 33333555555554 34444 44444444444443 4433222 333334
Q ss_pred HHHHHhh-cCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q psy10729 242 QKMKKLL-SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294 (363)
Q Consensus 242 ~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 294 (363)
..+++-+ +.++......++..|..-..........+=...+.+++....++..
T Consensus 628 an~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe 681 (2710)
T PRK14707 628 TNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPD 681 (2710)
T ss_pred HHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCC
Confidence 4455555 3455566666666665543333333333334556666665555543
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.7 Score=34.13 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=88.8
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH-HcCchHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI-QAGGLQKM 244 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L 244 (363)
...++++..+.-++..+. +...+. ...-+-+.+-.++...+.+-...++.++..+-...++....++ ..|+.+.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 456778888888888885 222122 2222234444455555556788888899999888887665555 66899999
Q ss_pred HHhhc--CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHh-cCCcHH
Q psy10729 245 KKLLS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ-HHENET 321 (363)
Q Consensus 245 ~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~ 321 (363)
+.++. ..+..++..++.+|..-|.+. .. +..+.+ .|++-|.++. +++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~d~-~~-------------------------r~~I~~-~~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACIDK-SC-------------------------RTFISK-NYVSWLKELYKNSKDDS 144 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTTSH-HH-------------------------HHCCHH-HCHHHHHHHTTTCC-HH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHccH-HH-------------------------HHHHHH-HHHHHHHHHHccccchH
Confidence 99998 678888888888887766542 11 233333 4788888887 455565
Q ss_pred -HHHHHHHHHHh
Q psy10729 322 -VYQKCYKIISM 332 (363)
Q Consensus 322 -v~~~a~~~l~~ 332 (363)
++-.|.-.|-+
T Consensus 145 ~ir~~A~v~L~K 156 (157)
T PF11701_consen 145 EIRVLAAVGLCK 156 (157)
T ss_dssp -CHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 77777666543
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=92.90 E-value=2 Score=34.12 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=80.2
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhhcCCCh-hhHHHHHHHHHHhhc-
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDSEET-TILTAALRTVGNIAT- 226 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--g~l~~l~~lL~~~~~-~v~~~a~~~L~nl~~- 226 (363)
......+..+..++++.++.-+..++..+...+..++. +.+.+. .++..++..|+.+++ .+.+.++.++..+..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44567778889999999999999999999999877642 333333 468888888887655 578888888888765
Q ss_pred --CChhHHHHHHHc---CchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 227 --GNDHQTDCVIQA---GGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 227 --~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+.++..+++.-. +++..++++++. ......+..+|..+....
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 445555555433 344455555554 456677777777777643
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.2 Score=36.06 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=60.8
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcC---------CChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCChH
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDS---------EETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRV 253 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~ 253 (363)
..+....+.+++.|++..|+.+|.. .+......++.++..++... .....+++ .+++..+...+.++++
T Consensus 94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 3344556778888889999998842 23457888999998887644 44555555 5899999999999999
Q ss_pred hHHHHHHHHHHHHh
Q psy10729 254 NIVKEAAWTISNIT 267 (363)
Q Consensus 254 ~v~~~a~~~L~nl~ 267 (363)
.++..|.-.|..+|
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.38 Score=39.07 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHh---------------hcCChHHHHHhhCC-----CCcHhHHHHHHHHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLL---------------GLGTMPQILALVQP-----NTPTTFLRNIVWAISN 139 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~ 139 (363)
.+++......++..|+|+++.+..++..+- ....+..|+..+.. .+...-....+.++.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345566778889999999876554432222 12256666666644 2234567788889999
Q ss_pred hhcCCCCCCCHHHH-Hh--HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh---cCChHHHHHhhc
Q psy10729 140 LCRNKNPAPDFEKI-KI--CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD---TGVVPRLVELLD 207 (363)
Q Consensus 140 l~~~~~~~~~~~~~-~~--~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~---~g~l~~l~~lL~ 207 (363)
+++......-+... .. .+..|....++.+..=+..++.+|.|+|...+.. ..++. .+++|.++--|.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 99876322211111 12 3667777778886666788999999999777765 33333 245555555444
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.1 Score=34.81 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=70.2
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHh----------------cCChHHHHHhhcC------CChhhHHHHHHHHHHhh
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVD----------------TGVVPRLVELLDS------EETTILTAALRTVGNIA 225 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~ 225 (363)
+......++-.|+|++...... ..+++ ...+..|+.++.. ....-....+.++.|++
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3445566777777777655433 22222 1246666666644 22345678889999997
Q ss_pred cCChhHHHHHHHc--Cc--hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 226 TGNDHQTDCVIQA--GG--LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 226 ~~~~~~~~~l~~~--~~--l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+ .+..++.+.+. +. +..|+..+++.+..-|..++.+|.|+|.....+
T Consensus 87 ~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 87 Q-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred C-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 7 56666777764 33 778888888888777888999999999986555
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.9 Score=43.94 Aligned_cols=141 Identities=9% Similarity=0.066 Sum_probs=88.5
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
+..++..+.. +...++..|+.||+.+...++.- .....+-..+-.-+.+....|++.|+..+|...-..++.....
T Consensus 818 Lk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 818 LKLILSVLGE-NAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3444445553 34689999999999999865321 1112233334445566778899999999998876555443332
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
...+.+-+.++.-.||+.+++++..+|...++... +.+ +...++.-+++.+..+++-+..++.++
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 56777777888889999999999999987776532 111 122222223333333555555555544
|
|
| >KOG2933|consensus | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.7 Score=39.87 Aligned_cols=142 Identities=12% Similarity=0.108 Sum_probs=98.5
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
+...+..|.+.++.....++..+..++...++...... ...+..+++-+++..+ .+-+.++.++..+....+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS-~VsraA~~t~~difs~ln~~i--- 164 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRS-AVSRAACMTLADIFSSLNNSI--- 164 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHH---
Confidence 55566777788888888899999988866555433333 3355666666776664 788889999999988654321
Q ss_pred HHHhHHHHHHHhhccC---ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 152 KIKICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
....-..+..++... +.=++.+|-.+|..+....... .+++.|...+.+.++.++..++.+..+...
T Consensus 165 -~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 165 -DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred -HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 123334445555543 3448899999999998665543 237888888999999999988876666543
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=92.33 E-value=4 Score=40.58 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=89.4
Q ss_pred HHHHHhcCChHHHHHhhcCC--------ChhhHHHHHHHHHHhhcCChhHHHHHHH-----c---CchHHHHHhhcC---
Q psy10729 190 IQAVVDTGVVPRLVELLDSE--------ETTILTAALRTVGNIATGNDHQTDCVIQ-----A---GGLQKMKKLLSS--- 250 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~~~--------~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----~---~~l~~L~~~l~~--- 250 (363)
.+.+.+.+.+..++.+..-+ ..+....|+.+|.-+..-.+-+ ..+.. + .++..++..-..
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq-~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQ-KALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHH-HHHHHHHhhcccccCceEEEeeccccccc
Confidence 45566777788888877532 2346778888887765543333 33332 1 244444444422
Q ss_pred -ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHH-HHHh----cccchHHHHHHHHcCcHHHHHHHhcCCc
Q psy10729 251 -SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLD-----NLLE-IALQ----VGELNQMALLVEESGGLEKLEALQHHEN 319 (363)
Q Consensus 251 -~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~-----~ll~-~~~~----~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 319 (363)
.+|++++.|..+|.|++...++.....+..... .+.- ...+ .......+..++..+|+..|..|++..+
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 279999999999999998865554333321111 0000 0000 0112345667788899999999877554
Q ss_pred -----HHHHHHHHHHHHhhcCCCc
Q psy10729 320 -----ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 320 -----~~v~~~a~~~l~~~~~~~~ 338 (363)
..+|..|.+.|--+.+++.
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcH
Confidence 4588889988888777653
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.5 Score=34.00 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHh------------HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc
Q psy10729 129 FLRNIVWAISNLCRNKNPAPDFEKIKI------------CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196 (363)
Q Consensus 129 ~~~~~~~~L~~l~~~~~~~~~~~~~~~------------~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 196 (363)
++..++.+|..++...+++.-...... -.+.+.-++.++++++|..|+.++..+.++........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 466677777777776333322222211 12334455677889999999999999998875443322211
Q ss_pred C----C---------------hHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcCch----HHHHHhhcCCh
Q psy10729 197 G----V---------------VPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGL----QKMKKLLSSSR 252 (363)
Q Consensus 197 g----~---------------l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l----~~L~~~l~~~~ 252 (363)
. . =..|+..|+.+ +..+....++++..++...+..+- +.|++ ..+...+.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 1 1 12233334433 667888999999999987664321 12444 44555567788
Q ss_pred HhHHHHHHHHHHHHhcC
Q psy10729 253 VNIVKEAAWTISNITAG 269 (363)
Q Consensus 253 ~~v~~~a~~~L~nl~~~ 269 (363)
+.++..+..+++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999998888887764
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.25 E-value=2.7 Score=37.80 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=105.4
Q ss_pred HHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 25 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 25 ~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+...++..+..++ +..++......+.+|..-...- ..-+...++..+.+=+++..+.+|+.-+..++......+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 4556677788888 5667777777777776655221 1111224456666666777777888888888887751111
Q ss_pred hhHHHhhcCChHHHHHhhC----CCCcHhHH--HHHHHHHHHhhcCCCCCCCH--HHH----HhHHHH--HH-Hhhcc-C
Q psy10729 104 ARDLLLGLGTMPQILALVQ----PNTPTTFL--RNIVWAISNLCRNKNPAPDF--EKI----KICLPL--LN-QLIHT-T 167 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~----~~~~~~~~--~~~~~~L~~l~~~~~~~~~~--~~~----~~~i~~--l~-~ll~~-~ 167 (363)
......-..++|.|...++ ++...... ..++.++..+.......... ... .+--|. +. .+... .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 1112223457788887774 22211000 11111111111111000000 000 000000 00 11122 3
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhH
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
+++-....++++..+..+.+.....-....+-..++.++-++ .+++|..|+.++..+...++..
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 455566677777777655443221111234467788888877 7899999999999998877763
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.7 Score=33.15 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=92.2
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 30 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 30 l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
++.|+.-+ +..++..+...+..|..++.++.... .-++..+..+.+.+.......+...+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 44555534 77889999999999999997652121 1335566666777776666677778888876544321
Q ss_pred hhcCChHHHHHh--hC-------CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHH
Q psy10729 109 LGLGTMPQILAL--VQ-------PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWA 178 (363)
Q Consensus 109 ~~~g~i~~L~~l--l~-------~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~ 178 (363)
+.+..++.. ++ .....+.......++..+|...+. ...++++.+...+ ++.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334443333 11 112234444455678888887632 4467788888889 78888899999999
Q ss_pred HHHhccC
Q psy10729 179 LSYISDG 185 (363)
Q Consensus 179 L~~l~~~ 185 (363)
+..++..
T Consensus 146 l~~Lc~~ 152 (234)
T PF12530_consen 146 LAPLCEA 152 (234)
T ss_pred HHHHHHH
Confidence 9999933
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.93 Score=31.91 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=55.7
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
.......++++.+.+|..++..|+.+....+. ...-..+++..+...|+++++-+--.|+.++..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34456667788889999999999999977661 1112235678888889999999999999999999876554
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.45 E-value=6.8 Score=37.25 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=86.7
Q ss_pred hHHHHHhcCCCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 72 IPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 72 i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+.+++.+-+.+. ..+.......+.-.-.++|+..+.+ .|.+..+++-+.+.+ ..++..++..|+.+...-. ..+
T Consensus 51 vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~v~-eID 126 (885)
T COG5218 51 VNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELV--AGTFYHLLRGTESKD-KKVRKRSLQILALLSDVVR-EID 126 (885)
T ss_pred HHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHH--HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHhcc-hHH
Confidence 334444444332 3444444444443445566652222 566666666666776 4899999999998887642 223
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHH
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTV 221 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L 221 (363)
.....+++..+..-+.+..+.++..|+.+|.++.....+....+ ...++.+++ +|+.+||..|+.-+
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHHHHe
Confidence 34556777777777778889999999999999985444321221 334444454 45667888875443
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.4 Score=34.10 Aligned_cols=97 Identities=8% Similarity=0.103 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-----ChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHH
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-----~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ 246 (363)
..++..+-.+++.+.. +..++++.+--.+.++|... -+.+|..++..++.+..+. +...+.+....++|..++
T Consensus 118 cnaL~lLQclaShPet-k~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPET-KKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcch-heeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4566666666666554 35566666544555555322 2348999999999999854 455677778899999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
++..++.--+--|++.+..+..++
T Consensus 197 Ime~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc
Confidence 999998888888888888877653
|
|
| >KOG2137|consensus | Back alignment and domain information |
|---|
Probab=91.28 E-value=12 Score=36.49 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=80.7
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCCh
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.....++|.|..-++..+..++..++..+...+..-|. ..++.-++|.+-.+. ++.+..++..++-+++.++..-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 45677888888888889999999999999999866662 345667788887764 45567899999999999873211
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.-.++ ..+..+....+..++.+......+..++...
T Consensus 462 --~~~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 462 --KAAVL--DELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred --HHHhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 11222 2355556666677888888877777777654
|
|
| >KOG1949|consensus | Back alignment and domain information |
|---|
Probab=91.18 E-value=3 Score=40.32 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcC-CCh----HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIAS-GTS----EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~----~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
|.+-+-|+..+..+|..|+..+.++-= .+| +..+.+++ +-...+.++|.++-+.+|..|+..++.+... ..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK---FW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence 344555577899999999999988631 233 33444444 4467788999999999998888777766532 11
Q ss_pred HHHh---hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 106 DLLL---GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 106 ~~~~---~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
..+= -...+..+..-+..++..+++-.+..+|..+..++- .......++|.+-..|++....++..+...|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 1111 112233333334444445788888888888887642 2334466778888888888888888887777665
Q ss_pred c
Q psy10729 183 S 183 (363)
Q Consensus 183 ~ 183 (363)
-
T Consensus 330 k 330 (1005)
T KOG1949|consen 330 K 330 (1005)
T ss_pred H
Confidence 3
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=90.72 E-value=14 Score=34.41 Aligned_cols=242 Identities=11% Similarity=0.093 Sum_probs=116.2
Q ss_pred CHHHHHHhcC----CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-HHHHHHHHHHHHHhh----C
Q psy10729 29 VVPICVELLD----DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIA----G 99 (363)
Q Consensus 29 ~l~~L~~lL~----~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~nl~----~ 99 (363)
++..|..++. .+++.+....++++.-+...-......+++ ..+..+....++|. +..-.....+++.+. .
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 3445555552 456667777777777766554444444443 34555555556654 554444444444443 2
Q ss_pred CCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 100 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 100 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
.++.. -.-.+...+|.+..+|+.+- .+..-.+...|+.|........-......++|.+..-.--+...-.-...+.|
T Consensus 106 ~~~~~-v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL 183 (435)
T PF03378_consen 106 ADPEA-VSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLL 183 (435)
T ss_dssp GGHH----HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHH
T ss_pred CChhH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHH
Confidence 22221 12345678999999998776 48888888888888876531111111223333332111001111123444455
Q ss_pred HHhccCChhhHHHHHhc----CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhc-CChH
Q psy10729 180 SYISDGHNDKIQAVVDT----GVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLS-SSRV 253 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~----g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~-~~~~ 253 (363)
..+....+... ... +++..+-+++.+... -.++...|..+...-+. ..+..+. .++..++.-++ +..+
T Consensus 184 ~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 184 QAYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTE 257 (435)
T ss_dssp HHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--H
T ss_pred HHHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcH
Confidence 55443333221 222 334444556665543 24567777777664433 2222221 24444555554 3455
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 254 NIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
+..+.-+..++.++.. ++...-..++
T Consensus 258 kf~~~fv~F~~~~~~~~g~~~li~~id 284 (435)
T PF03378_consen 258 KFVKRFVVFLSLFAIKYGPDFLIQTID 284 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6666656666665543 5555555555
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG2933|consensus | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.1 Score=36.12 Aligned_cols=141 Identities=9% Similarity=0.122 Sum_probs=96.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+...+..|.+.+|.....++..+..++...++.....+. .++..+++-++++...|-+.|+.+++-+...-. ..+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln---~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN---NSID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 445666778888999999999998888766655544432 445666777778888899999999999874321 1222
Q ss_pred hcCChHHHHHhh-C--CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 110 GLGTMPQILALV-Q--PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 110 ~~g~i~~L~~ll-~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
+ -++.++..| . ..++.=++..+-.+|..+..+..+ ..+++.|...+.+.++.++..++.+..+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1 344444433 3 334345778888899988877533 456677777888999999888887776665
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=90.26 E-value=10 Score=32.02 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=92.0
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
++.++.-+....+.+.....+.+|..++.+.+ .....++..+..+.+.++.....-+.+.+..+....+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 45555545555556899999999999998862 2334566777778888777777777788888776655332
Q ss_pred HhcCChHHHHHh-----h---c--CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh-cCChHhHHHHHHHH
Q psy10729 194 VDTGVVPRLVEL-----L---D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWT 262 (363)
Q Consensus 194 ~~~g~l~~l~~l-----L---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~ 262 (363)
+.+..++.. . . +...+.......++..+|...++.- ..+++.+..++ ++.++.++..+.-+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333 1 1 1122344555567778887666622 34677788888 67788888889989
Q ss_pred HHHHhc
Q psy10729 263 ISNITA 268 (363)
Q Consensus 263 L~nl~~ 268 (363)
+..++.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 998884
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=90.24 E-value=8.5 Score=33.20 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHhcC----CCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 33 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLS----SPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+...+..=..+-+.-++..++-++. ++.....+...+ ....+..++. +..+..+-.++++++|+..+. ..+.
T Consensus 68 ~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~~~~ 145 (268)
T PF08324_consen 68 LLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-PGRQ 145 (268)
T ss_dssp HHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-CCHH
T ss_pred HHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-ccHH
Confidence 3333333333445566666666664 344444443332 2344444433 345778888999999998764 4556
Q ss_pred HHhhc-C-ChHHHHHhhCCCC---cHhHHHHHHHHHHHhhcCCCCCC-CHHHHHhHHHHHHHhhc-c-CChhhHHHHHHH
Q psy10729 107 LLLGL-G-TMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAP-DFEKIKICLPLLNQLIH-T-TDVETLSDICWA 178 (363)
Q Consensus 107 ~~~~~-g-~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~ll~-~-~~~~v~~~al~~ 178 (363)
.+... + .+...+..+.... +..++..++.++.|++....... .......++..+.+.+. . .|++....++-+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 66532 2 2222222222321 35778888888888764221111 11222345566666333 2 789999999999
Q ss_pred HHHhccCChhhHH
Q psy10729 179 LSYISDGHNDKIQ 191 (363)
Q Consensus 179 L~~l~~~~~~~~~ 191 (363)
+|++...++....
T Consensus 226 lGtL~~~~~~~~~ 238 (268)
T PF08324_consen 226 LGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHCCSHHHHH
T ss_pred HHHHhccChhHHH
Confidence 9999977665433
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=90.05 E-value=7.2 Score=36.09 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=103.7
Q ss_pred HHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 66 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 66 i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
.++...+..|+.+++++|++-|.....++.++....+..|..+ ...+...+.+.+.......-...++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 3445678889999999999999999999999876555555443 344555555655544434556677778887777642
Q ss_pred CCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 146 PAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
.........-+...++.+...... ........++..+...++.....+ +..+++.=-..++.=...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 222222223333445555555443 345666666666665555443322 22333332223332222333334444
Q ss_pred hcC-ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 225 ATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 225 ~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
... .+.....+.. .+...+...+++.+..|.+.|...+.|
T Consensus 283 l~~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 283 LEVLPPEEFQKIMV-PLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HTT--HHHHHHHHH-HHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHhcCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 432 2333332332 356667777788888888877765543
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG0413|consensus | Back alignment and domain information |
|---|
Probab=90.01 E-value=20 Score=36.45 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
.+.-++.++.-.+. . .....+|.|++-| .+....+|...+-+++.+|.+. .++-.-.+|.+...|.++
T Consensus 950 ~~vvTlakmcLah~-~-----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 950 VGVVTLAKMCLAHD-R-----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred HHHHHHHHHHhhhh-H-----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCc
Confidence 45566666543332 1 2335688898888 6777778877777777777432 233347899999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcC--ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 146 (363)
++-++++++-.|.+|... ..+...| .+..++.++... +.++..+-.+++.+....+|
T Consensus 1019 ~~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~D~~--edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALLDAN--EDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hHHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHcccC--HHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999854 2333344 355555666543 46777777777776665543
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=90.00 E-value=14 Score=33.11 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=109.5
Q ss_pred HHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-CChHhHHHHHhC-CC-hHHHHHhcCCC-----C--------H
Q psy10729 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINA-NA-IPKFLQLLSSP-----H--------L 84 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~~~~~~i~~~-~~-i~~l~~ll~~~-----~--------~ 84 (363)
++.+++.. ++.+-+.|.+....+...+++.|..++. ........+... +. .+.+-+++..+ . +
T Consensus 50 ~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 50 IRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 34455554 8888888888888888999999999997 555555555443 32 44566665311 1 2
Q ss_pred HHHHHHHHHHHHhhC-CCCchhHHHh-hcCChHHHHHhhCCCCcHhHHHHHHHHHH-HhhcCCCCCCC---HHHHHhHHH
Q psy10729 85 NLAEQATWALGNIAG-DGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAIS-NLCRNKNPAPD---FEKIKICLP 158 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~-~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~~~~~~L~-~l~~~~~~~~~---~~~~~~~i~ 158 (363)
.+|...+..+..+.. .++..+..+. ..+.+..+.+-|.. |+.++...++.+|. ++..+...... .......+.
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS 207 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence 788888877776664 3444555555 45567777777777 44688888888887 45555422221 122255677
Q ss_pred HHHHhhccCCh----hhHHHHHHHHHHhccCCh
Q psy10729 159 LLNQLIHTTDV----ETLSDICWALSYISDGHN 187 (363)
Q Consensus 159 ~l~~ll~~~~~----~v~~~al~~L~~l~~~~~ 187 (363)
.|..+....++ .+...+-..|..+|..+.
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 88887777777 788888888888886554
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=89.47 E-value=4.4 Score=39.78 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred HhHHHHHHHhhc----cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhc
Q psy10729 154 KICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIAT 226 (363)
Q Consensus 154 ~~~i~~l~~ll~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~ 226 (363)
..+++.+...+. ..+..-+..++.+|+|+-.. ..++.+.+++... +..+|..|++++..++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 444555555544 46778888999999999632 2266777777665 56799999999999876
Q ss_pred CChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHH
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISN 265 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~n 265 (363)
..+... .+.++.+..+. ++++|..|..+|..
T Consensus 554 ~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 554 HCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp T-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 555433 35567777553 57788877666554
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes | Back alignment and domain information |
|---|
Probab=89.23 E-value=11 Score=32.96 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=87.5
Q ss_pred HHHhhcCChHHHHHhhCC------CC----------------cHhHHHHHHHHHHHhhcCCCCC----------------
Q psy10729 106 DLLLGLGTMPQILALVQP------NT----------------PTTFLRNIVWAISNLCRNKNPA---------------- 147 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~------~~----------------~~~~~~~~~~~L~~l~~~~~~~---------------- 147 (363)
..+.+.|++|.|-.++.. .. ...++..-+..+.++|+..+..
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 455667777777666541 00 0235666777777777733111
Q ss_pred -----CCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCChh--hHHHHHhcCChHHHHHhhcCCC---hhhHH
Q psy10729 148 -----PDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHND--KIQAVVDTGVVPRLVELLDSEE---TTILT 215 (363)
Q Consensus 148 -----~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~--~~~~~~~~g~l~~l~~lL~~~~---~~v~~ 215 (363)
.......|++..++..+.. .+...+.+...++-.+.++.+. ....+.+.|+++.++.-+-++. ..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1112235677777776665 3566788999999999988776 2346778899999999876553 35899
Q ss_pred HHHHHHHHhhcCChhHHHHH
Q psy10729 216 AALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l 235 (363)
.....||.|...+....+.+
T Consensus 163 ~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 99999999999887654433
|
Proteins in this family are typically between 399 and 797 amino acids in length. |
| >KOG0413|consensus | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.1 Score=44.77 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
.++..+.-+++++|-..... ....+|.+++-|+..+...++.+.+-++..+|.+. .......+|.+...|
T Consensus 946 ~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHh
Confidence 57788888999999543332 24568999999997776788888888888888764 135567899999999
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.++++-+++.++-.|.+|....-.. .+..++-+++--+-+.+++++..|=..++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998543211 111123333334445677888888888888765
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=88.90 E-value=5.4 Score=31.41 Aligned_cols=145 Identities=9% Similarity=0.143 Sum_probs=77.5
Q ss_pred CChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 70 NAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 70 ~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
..++.|+++++++ +.++|..++.+++.|..-+|...+.+. +..+.-. -.... ........ +..+..+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~--~~~~~-~~~~~~~l-----~~~~~~~~~ 79 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKS--SENSN-DESTDISL-----PMMGISPSS 79 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCccc--ccccc-ccchhhHH-----hhccCCCch
Confidence 4567788888755 489999999999999988776543222 1111000 00111 01111111 111111122
Q ss_pred CHHHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
+......++..|+..|+++.-. -...++.++.++.......+..++ ..++|.++..+++.++..++...+-|+.+.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2334455667777777664422 233455555555422221112222 245888888888777788888777777664
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.5 Score=26.71 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=40.9
Q ss_pred hHHHHHHHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCccCccCC
Q psy10729 296 NQMALLVEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSAENSIEN 344 (363)
Q Consensus 296 ~~~~~~l~~~~~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 344 (363)
...+..|++.|+.+.|..+. ...+++|.+.+..+.+-+..+++++++|+
T Consensus 9 ~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~~~~ 58 (58)
T PF04064_consen 9 REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEGQEN 58 (58)
T ss_pred HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 45578999999999998874 45689999999999999999998887653
|
It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO). |
| >KOG2611|consensus | Back alignment and domain information |
|---|
Probab=88.06 E-value=23 Score=33.04 Aligned_cols=190 Identities=12% Similarity=0.188 Sum_probs=116.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCCCCc---hhHHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhhcCCC
Q psy10729 75 FLQLLSSPHLNLAEQATWALGNIAGDGAR---ARDLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 75 l~~ll~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~~~~~ 145 (363)
+..+.+..+.+-+-.++.....++..++. .++.+++.=|++.+-+++... .+...+.-+...|...|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 45566666666777788888888866542 466677888899999998722 122334455667888888874
Q ss_pred CCCCHHHHHhHHHHHHHhhcc-CChh------hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhh-HHHH
Q psy10729 146 PAPDFEKIKICLPLLNQLIHT-TDVE------TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI-LTAA 217 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~~ll~~-~~~~------v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v-~~~a 217 (363)
-..+ ...-.-+|.+.+.+.. .|++ +...+-.+|..++..... ...++..|.++.+.+.-.-++... ...+
T Consensus 96 lAsh-~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASH-EEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccC-HHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4333 3345567888888765 2332 778899999999877554 477899999999998766554432 2333
Q ss_pred HHHHHHhhcCC---hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 218 LRTVGNIATGN---DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 218 ~~~L~nl~~~~---~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+.++.-...+- ++....+.. ++..+..=+...+...+.+.+..|..+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33333322211 111111111 12223333344455677777877775544
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=87.82 E-value=17 Score=35.81 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=78.7
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhh
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
+..+.+++.... ---..+.+.+..+.... ..+. ...+..+..+++. .++.++..|+.+++.+....-..
T Consensus 397 v~~i~~~I~~~~--~~~~ea~~~l~~l~~~~-~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 397 VKFIKDLIKSKK--LTDDEAAQLLASLPFHV-RRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHTT---S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHHhhc-CCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 444555555432 11223444455554443 1112 3455555556554 45678888887777775211100
Q ss_pred ---------HHHHHhcCChHHHHHhhc----CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC---hH
Q psy10729 190 ---------IQAVVDTGVVPRLVELLD----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS---RV 253 (363)
Q Consensus 190 ---------~~~~~~~g~l~~l~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~---~~ 253 (363)
....+...+++.+...+. ..+...+..++.+|+|+-. + ..++.|...+... +.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccch
Confidence 011122345566666554 3456788899999999843 2 3566677777655 68
Q ss_pred hHHHHHHHHHHHHhcCCHHHHH
Q psy10729 254 NIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
.+|..|+|+|..++...+..+.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~ 560 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR 560 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH
Confidence 8999999999999877766544
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG1566|consensus | Back alignment and domain information |
|---|
Probab=87.69 E-value=18 Score=31.59 Aligned_cols=231 Identities=11% Similarity=0.113 Sum_probs=142.4
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC--CHHHHHhHHHHHHHhhcc-C-ChhhHHHHHHHHHH
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP--DFEKIKICLPLLNQLIHT-T-DVETLSDICWALSY 181 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~-~-~~~v~~~al~~L~~ 181 (363)
+.+...|.++.++..+...+ -+.+..+..+..++-...-... .......-...+..++.. . .+++.-.+-..+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~-fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLE-FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhccc-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 34556788888888887665 4778888888888876543222 112222222233333333 2 25555555555555
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc----hHHHHHhhcCChHhHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG----LQKMKKLLSSSRVNIVK 257 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----l~~L~~~l~~~~~~v~~ 257 (363)
+.+... ..+.+....-+.....+++.+.-++...|..+...+.......+..+...+. .+.--.++.+++.-+++
T Consensus 152 cirhe~-LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 152 CIRHEF-LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHhhHH-HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 554444 3467777788888899999898899999999999988866666666665543 33466678889999999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHH-----HHHHHHHHHHH---hcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy10729 258 EAAWTISNITAG--NSRQIDHVIQ-----EGLDNLLEIAL---QVGELNQMALLVEESGGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 258 ~a~~~L~nl~~~--~~~~~~~~~~-----~~l~~ll~~~~---~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
.+..+++.+..+ +.....+.+. ..+.++++--. ++.+...+.....+..--+.+..++..-.+.+.
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl---- 306 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLL---- 306 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHH----
Confidence 999999998875 3344444444 33333433111 122333444445554555555555555544443
Q ss_pred HHHHhhcCCCccCcc
Q psy10729 328 KIISMAFNDSAENSI 342 (363)
Q Consensus 328 ~~l~~~~~~~~~~~~ 342 (363)
+.+..|..+.-+|+|
T Consensus 307 ~~l~~f~~d~~~Deq 321 (342)
T KOG1566|consen 307 ELLHDFHTDRTEDEQ 321 (342)
T ss_pred HHHHHhCCCCCchhh
Confidence 666777777666665
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=87.60 E-value=7.5 Score=29.99 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=58.9
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~~ 268 (363)
++..+.+-+.+.++.++..|+..|-.++.+... ....+....++..|.+++.. .++.|+..+...+..++.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 367788888899999999999999999886544 55577777899999999988 688899988888888764
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=87.59 E-value=8.1 Score=29.33 Aligned_cols=70 Identities=10% Similarity=0.000 Sum_probs=56.9
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC---ChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~nl~~ 268 (363)
+..|.+-|+++++.++..|+..|-.++.+... ....+....++..|++++.. .++.|+..+...+.++..
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999987655 44555565788889999975 478899998888888764
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.58 E-value=3.1 Score=34.32 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHHH
Q psy10729 46 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQILA 119 (363)
Q Consensus 46 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ 119 (363)
..|+..|-.++ ..|+.+..+++..+--.+..+|.. +.+-++-.++.+++.+..+++ +....+....++|.+++
T Consensus 118 cnaL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45666777777 458888888877654445555542 235688889999999996544 45666677899999999
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCC-------CHHHHHhHHHHHH-HhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAP-------DFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-------~~~~~~~~i~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
++..+. +--+..+..++..+.-++.... .+.....++..++ ++.......+.+.++++--.++..+.
T Consensus 197 Ime~gS-ElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 197 IMELGS-ELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHhhh-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 998765 2333334444444433331111 0111111222222 22233555677777777777765443
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=87.36 E-value=30 Score=33.69 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=79.0
Q ss_pred hHHHHHhhCCC---CcHhHHHHHHHHHHHhhc----CCCCCCCHHHHHhHHHHHHHhhcc----CChhhHHHHHHHHHHh
Q psy10729 114 MPQILALVQPN---TPTTFLRNIVWAISNLCR----NKNPAPDFEKIKICLPLLNQLIHT----TDVETLSDICWALSYI 182 (363)
Q Consensus 114 i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l 182 (363)
+..+..++.++ ....++..+.-+++.+.. +.+... ......+++.+...|.. .+.+-+...+.+|+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 45666777633 223455555555555543 322111 22345667777666643 4566677889999998
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhc-C--CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLD-S--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVK 257 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~-~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~ 257 (363)
..... ++.+..++. + .++.+|..|+++|..++...+... -+.++.+..+. ++++|.
T Consensus 474 g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 75332 334444443 2 245699999999999876554432 34466666553 678888
Q ss_pred HHHHHHHHH
Q psy10729 258 EAAWTISNI 266 (363)
Q Consensus 258 ~a~~~L~nl 266 (363)
.|..+|...
T Consensus 535 aA~~~lm~t 543 (574)
T smart00638 535 AAVLVLMET 543 (574)
T ss_pred HHHHHHHhc
Confidence 877766644
|
|
| >KOG1848|consensus | Back alignment and domain information |
|---|
Probab=86.63 E-value=16 Score=38.55 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=54.7
Q ss_pred CCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC---CHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---HLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~nl~~~~~ 102 (363)
|.+.+.+++. .++..+++...+.++.++.....+..-.- ...+++.+-...... ..++.+.+..+|.-++.+.-
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfL 918 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFL 918 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcch
Confidence 4444444444 55667888888888888875433221100 112222222222222 34677777777777775532
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
..-..-.-.+.++++....+...+..+--.+...++.+
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtv 956 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTV 956 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 11111122456666666665333333333344333333
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=86.57 E-value=20 Score=30.86 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhCC-------CCchhHHHhhcCChHHHHHhhCCCC---cHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 86 LAEQATWALGNIAGD-------GARARDLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 86 v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
.-+.++..+..+... ++..|-.+.-.+.+|.++.-+..+. .......++..|+.+|... .... .+.
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-~~~~---La~ 153 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-GLPN---LAR 153 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-CCcc---HHH
Confidence 344566666666532 1222444444567788888777665 1245667778888888653 2211 122
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++.....--..+..+....++..++.-.. ++. +...+..++.+|.++.+.++..++.+|..+...-+-...
T Consensus 154 il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 154 ILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence 22222211112334444555554443221 111 123367889999988889999999999999875444332
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...+++.++.++++++ ...+|..+|-+...
T Consensus 225 ~~~dlispllrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 225 HGADLISPLLRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred cchHHHHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence 5567888899999766 34555555555543
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.49 E-value=1.4 Score=36.68 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=58.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHc-------CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhH-HHHHhCCCh
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEA-------GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQT-MTVINANAI 72 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~-------g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~~~i 72 (363)
|+-|+.+|.|+.-.+.| .+.++.. .....|+++| ..+++-.|+.|+-.|.+++..+.... ....+.+.|
T Consensus 141 qrlaLEaLcKLsV~e~N--VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 141 QRLALEALCKLSVIENN--VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHhheeccC--cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 67789999996444432 3444433 4556777777 67788899999999999998765554 455677899
Q ss_pred HHHHHhcCCCC
Q psy10729 73 PKFLQLLSSPH 83 (363)
Q Consensus 73 ~~l~~ll~~~~ 83 (363)
..|+.++.+.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997654
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1788|consensus | Back alignment and domain information |
|---|
Probab=86.38 E-value=44 Score=34.63 Aligned_cols=255 Identities=14% Similarity=0.154 Sum_probs=142.7
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC----
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---- 82 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---- 82 (363)
.+|..++.... ++-..+.+..++..++.++ -+++-|...++++..+...++.... ..-+-.++..|++.
T Consensus 664 DcLisllKnnt-eNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 664 DCLISLLKNNT-ENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHhccc-hhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 34555555543 4557788888888888888 2333445555666665544443221 01123344444431
Q ss_pred ----C----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---------CCCcHhHHHHHHHHHH-----Hh
Q psy10729 83 ----H----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---------PNTPTTFLRNIVWAIS-----NL 140 (363)
Q Consensus 83 ----~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---------~~~~~~~~~~~~~~L~-----~l 140 (363)
+ .+.......+++.+..-+-..+..+-+.+|+..|...|. +..+.-+.......+. .+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1 245666777888887666667778888999988887664 1111122222222221 12
Q ss_pred hcCCCCCCC------------HHHHHh---------HHHHHHH----hhccCChhhHHHHHHHHHHhccC----------
Q psy10729 141 CRNKNPAPD------------FEKIKI---------CLPLLNQ----LIHTTDVETLSDICWALSYISDG---------- 185 (363)
Q Consensus 141 ~~~~~~~~~------------~~~~~~---------~i~~l~~----ll~~~~~~v~~~al~~L~~l~~~---------- 185 (363)
|.+..+... .....+ .+..+.+ .+-+++-.--..||..+-.+-.+
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 222221110 001111 1111111 11223323334455444433211
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc---CChHhHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWT 262 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~ 262 (363)
.....+.+...|++..+++.+-...|+.+.+-+..+..+++.++.........|.++.|+.++. +++......+...
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 1122466788999999999988888999999999999999988888877777799998888873 3333445555555
Q ss_pred HHHHhc
Q psy10729 263 ISNITA 268 (363)
Q Consensus 263 L~nl~~ 268 (363)
+.-++.
T Consensus 977 vemLga 982 (2799)
T KOG1788|consen 977 VEMLGA 982 (2799)
T ss_pred HHHHhh
Confidence 555554
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=26 Score=38.81 Aligned_cols=235 Identities=9% Similarity=0.054 Sum_probs=118.6
Q ss_pred HcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc----CCCCHHHHHHHHHHHHHhhCC
Q psy10729 26 EAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 26 ~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~nl~~~ 100 (363)
+...+.+|..++ .+.+.++++..+.|+.++..... ..+ .. +=+.++.++ .++++.+...+..++..+..+
T Consensus 1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 456788888888 66788999999999999874322 222 23 344444444 356678888888888877643
Q ss_pred CCc-h----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHh----hcCCC------------------------C-
Q psy10729 101 GAR-A----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL----CRNKN------------------------P- 146 (363)
Q Consensus 101 ~~~-~----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l----~~~~~------------------------~- 146 (363)
.-. . ...+ ...+..+........+..+--.++..|+.+ +...- .
T Consensus 1255 ~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 1332 (1780)
T PLN03076 1255 YFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQES 1332 (1780)
T ss_pred hhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 111 0 0011 122333333333222222323333333322 11100 0
Q ss_pred ---CCCHHHHHhHHHHH---HHhhccCChhhHHHHHHHHHHhccCCh-----hhHHHHHhcCChHHHHHhhcCC------
Q psy10729 147 ---APDFEKIKICLPLL---NQLIHTTDVETLSDICWALSYISDGHN-----DKIQAVVDTGVVPRLVELLDSE------ 209 (363)
Q Consensus 147 ---~~~~~~~~~~i~~l---~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~~~~~~g~l~~l~~lL~~~------ 209 (363)
..........+|.| ..+..+++++||..|+..|..+..... +.-..++ .+++-.++..++..
T Consensus 1333 ~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~ 1411 (1780)
T PLN03076 1333 GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGG 1411 (1780)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence 00001112334444 344556889999999998877763221 1111122 23444444443210
Q ss_pred ------------C-h-------hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 210 ------------E-T-------TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 210 ------------~-~-------~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+ . +....|+..+.++....-+....+. .+++..|...+...+..+.+.+..+|.++...
T Consensus 1412 ~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1412 DEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 0 0 1223344444444332222222222 24555666666777888889999999998864
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=85.96 E-value=22 Score=30.66 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=103.0
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-------hHhHHHHHhCCChHHHHHhcCCCC----HHHHHHHHHHHHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGT-------SEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGN 96 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-------~~~~~~i~~~~~i~~l~~ll~~~~----~~v~~~a~~~L~n 96 (363)
|+-+.+++-+.++ .....++.+|..++... .+.|-.+.=...+|.++.-+.+++ ......++..|+.
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3344444444332 33445666666665321 112332322356777777777766 2344566778888
Q ss_pred hhCCCCchhHHHhhcCChHHHHHhhC---CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHH
Q psy10729 97 IAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLS 173 (363)
Q Consensus 97 l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~ 173 (363)
+|.... .+.+..++.... ..+..+....++..++.-.. + ......+..+..++.++-+.++.
T Consensus 142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~---P----~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF---P----DHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC---c----hhHHHHHHHHHHHHhCCcHHHHH
Confidence 873311 223333333332 22233555555555443221 1 23356778899999999999999
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
..+.+|..+....+-... ...+++..+.++++++. ..+|+.+|-++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 999999999876654422 55567889999997664 5566666666554
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=85.95 E-value=6.7 Score=30.27 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=55.4
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC-
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH- 317 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~- 317 (363)
.++..|.+-+.++++.++..|...|-.++.+.... +...+...+.++.|..+...
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------------------fh~evask~Fl~eL~kl~~~~ 92 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------------------FHQEVASRDFTQELKKLINDR 92 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------------------HHHHHhhHHHHHHHHHHhccc
Confidence 34566788888889999999888888777664332 23455555666667777665
Q ss_pred CcHHHHHHHHHHHHhhcCCCccC
Q psy10729 318 ENETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
.+++|++++..+++........+
T Consensus 93 ~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC
Confidence 78999999999998875554433
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=84.94 E-value=24 Score=30.36 Aligned_cols=210 Identities=13% Similarity=0.058 Sum_probs=116.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|.+|+..|..++..-... .....-+..|+..+ .-.|......++..+..+.....-.... ...++..+.+-.
T Consensus 16 R~ka~~~Ls~vL~~lp~~----~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~~i~~~l~~~~ 89 (262)
T PF14500_consen 16 RAKALELLSEVLERLPPD----FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AVKILRSLFQNV 89 (262)
T ss_pred HHHHHHHHHHHHHhCCHh----hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HHHHHHHHHHhC
Confidence 456777777777765421 13333356666666 2245555555566666666322111111 001222222222
Q ss_pred C--CCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 80 S--SPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 80 ~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
+ +-....|..+...+..+..+.. ..+. ..+.+..+++.+..+.++.....+...+..+...-+. ......
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---~~~~e~ 163 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---SEFAED 163 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---chhHHH
Confidence 1 1224677788888888875422 2222 2346777888888666667777777777777766532 111222
Q ss_pred HHHHHHHhh----cc--CCh--hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 156 CLPLLNQLI----HT--TDV--ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 156 ~i~~l~~ll----~~--~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
+...+.... .. +|| -.+...-..|.+.....+... .-++|.+++-|.++.+.++..++.+|...+..
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 333222221 11 232 234555556666655544332 23489999999999999999999999988764
Q ss_pred C
Q psy10729 228 N 228 (363)
Q Consensus 228 ~ 228 (363)
.
T Consensus 239 y 239 (262)
T PF14500_consen 239 Y 239 (262)
T ss_pred C
Confidence 3
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=84.58 E-value=73 Score=35.56 Aligned_cols=206 Identities=11% Similarity=0.053 Sum_probs=111.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCh---HhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 39 DENPNTQFEATWALTNIASGTS---EQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
+++..+...|+..|..++..-- +....-.+..++.++..++. +.+.++++..+.|+.+|..... ..+ ..|.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI--kSGW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV--KSGW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh--hcCc
Confidence 4466778888888878775322 11111223456777777666 4567999999999999974311 122 2366
Q ss_pred HHHHHhhC---CCCcHhHHHHHHHHHHHhhcCCCCCC---CHHHHHhHHHHHHHhhccC-ChhhHHHHHHHHHHhc----
Q psy10729 115 PQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAP---DFEKIKICLPLLNQLIHTT-DVETLSDICWALSYIS---- 183 (363)
Q Consensus 115 ~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~---~~~~~~~~i~~l~~ll~~~-~~~v~~~al~~L~~l~---- 183 (363)
+.+..++. ....+.+...+..++..+..+.-... .......++..+....+.. +.++--.|+..+++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 66666665 22335777777777777765421100 0122344555555544433 4555556666665441
Q ss_pred cCCh-----------------------hhH-----HHHHhcCChHHHHH---hhcCCChhhHHHHHHHHHHhhcCC-hhH
Q psy10729 184 DGHN-----------------------DKI-----QAVVDTGVVPRLVE---LLDSEETTILTAALRTVGNIATGN-DHQ 231 (363)
Q Consensus 184 ~~~~-----------------------~~~-----~~~~~~g~l~~l~~---lL~~~~~~v~~~a~~~L~nl~~~~-~~~ 231 (363)
.+.- ... .......++|.|.. +..++.++||..|+.+|..+.... ...
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 1000 000 00001223444443 356778899999999998887532 222
Q ss_pred HHHHHH---cCchHHHHHhhc
Q psy10729 232 TDCVIQ---AGGLQKMKKLLS 249 (363)
Q Consensus 232 ~~~l~~---~~~l~~L~~~l~ 249 (363)
....++ .+++-+++..++
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 222332 246666666553
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=84.56 E-value=5.4 Score=30.68 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=58.2
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~ 268 (363)
++..+.+-|.++++.++..|+..|-.++.+. ......+.+.+++..|.+++. ..++.|+..+...+..++.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999988864 445566777889999999997 4578899998888888774
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=84.51 E-value=30 Score=33.10 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC--C--------CCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--P--------NTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~--------~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
+++.+|...|-..|..+...-+ +...+..|..+.. . +.+..++..++.. |+......
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~---L~kS~~Aa--- 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSL---LSKSVIAA--- 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHH---HHHhHHHH---
Confidence 4556777778778877764411 2234455555444 1 2234555554444 43321000
Q ss_pred HHHHhHHHHHHHhhccC--ChhhHHHHHHHH---HHhccCChh-h---HHHHHhcCChHHHHH----hhcCCChhhHHHH
Q psy10729 151 EKIKICLPLLNQLIHTT--DVETLSDICWAL---SYISDGHND-K---IQAVVDTGVVPRLVE----LLDSEETTILTAA 217 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~--~~~v~~~al~~L---~~l~~~~~~-~---~~~~~~~g~l~~l~~----lL~~~~~~v~~~a 217 (363)
.....++..+...+.++ +..++..++..+ ......... . ...++..++.|.+-. --.+.+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01123344445555555 566777766666 444433322 1 222333444554410 0112355799999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 218 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 218 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
..+|+.++...+... .-+-+++..|.+.+...+++++...--+|+.++.
T Consensus 395 Ye~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999999877543 1234678889999988889999888888888875
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=84.34 E-value=17 Score=31.67 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhH-HHHHhCCChHHHHH----hcC--------CCCHHHHHHHHHHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTVINANAIPKFLQ----LLS--------SPHLNLAEQATWAL 94 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~----ll~--------~~~~~v~~~a~~~L 94 (363)
=++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+-. ++. ++...+...+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468899999999999999999999999986544333 23555665554433 333 22345777777777
Q ss_pred HHhh
Q psy10729 95 GNIA 98 (363)
Q Consensus 95 ~nl~ 98 (363)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=84.12 E-value=19 Score=31.39 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh-HHHhhcCChHHHHHhh----C-------CCCcHhHHHHHHHHH
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR-DLLLGLGTMPQILALV----Q-------PNTPTTFLRNIVWAI 137 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~ll----~-------~~~~~~~~~~~~~~L 137 (363)
-++|.++.++++.+++++..++.+|..+....+... ..+.+.|..+.+-+.+ . ...+..+...+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 469999999999999999999999999997655422 2255667555544433 2 122245666666677
Q ss_pred HHhhc
Q psy10729 138 SNLCR 142 (363)
Q Consensus 138 ~~l~~ 142 (363)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 66654
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.94 E-value=11 Score=31.70 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=65.7
Q ss_pred HhHHHHHHHHHHHhhcCCCCC------CCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhhHHH-HHhcCC
Q psy10729 127 TTFLRNIVWAISNLCRNKNPA------PDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQA-VVDTGV 198 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~------~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~g~ 198 (363)
..-++.++.+|..|+-.+.+. +.......++..|+.++.. +++-.++-|+-.|.+++.++...... -.+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999999765432 3455667788888888865 67788999999999999888765533 356788
Q ss_pred hHHHHHhhcCCCh
Q psy10729 199 VPRLVELLDSEET 211 (363)
Q Consensus 199 l~~l~~lL~~~~~ 211 (363)
+..|+.++.+.+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976543
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=83.87 E-value=32 Score=30.83 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhcc-CChhhHHHHHhc-CC-hHHHHHhhcCC-----C--------hhhHHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISD-GHNDKIQAVVDT-GV-VPRLVELLDSE-----E--------TTILTAALRT 220 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~-g~-l~~l~~lL~~~-----~--------~~v~~~a~~~ 220 (363)
++.+...|....+.+...+++.+..+.. ........+... +. .+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6677778888888899999999999998 554444555443 22 34455555221 1 2788888887
Q ss_pred HHHhhc-CChhHHHHHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy10729 221 VGNIAT-GNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQM 298 (363)
Q Consensus 221 L~nl~~-~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 298 (363)
+..+.. +++...+.+++ .+.+..+.+-|..+++++......++..-...++.- ....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v---------------------~r~~ 196 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSV---------------------SRST 196 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCC---------------------Chhh
Confidence 777666 45555555554 467788888888888888888777777544332110 0011
Q ss_pred HHHHHHcCcHHHHHHHhcCCcH----HHHHHHHHHHHhhcCCC
Q psy10729 299 ALLVEESGGLEKLEALQHHENE----TVYQKCYKIISMAFNDS 337 (363)
Q Consensus 299 ~~~l~~~~~~~~L~~l~~~~~~----~v~~~a~~~l~~~~~~~ 337 (363)
+..+-....+..|..+.....+ .+.+.+.+.+..+..+.
T Consensus 197 K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 197 KCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred hhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 2233333456666666555555 89999999998866533
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.78 E-value=24 Score=28.60 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=59.0
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
....++.+.++..+++..++..|+..+..+....=..-. -.+|.++-+..++++.++..|...+..+....+...
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 456677888888899999999999999888743211101 238999999999999999999999999987666544
Q ss_pred H
Q psy10729 233 D 233 (363)
Q Consensus 233 ~ 233 (363)
.
T Consensus 81 ~ 81 (187)
T PF12830_consen 81 E 81 (187)
T ss_pred H
Confidence 3
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=82.62 E-value=9.4 Score=28.97 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=58.7
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHH-HHhcCChHHHHHhhcC---CChhhHHHHHHHHHHhhc
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA-VVDTGVVPRLVELLDS---EETTILTAALRTVGNIAT 226 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~g~l~~l~~lL~~---~~~~v~~~a~~~L~nl~~ 226 (363)
...++..|...|.++++.++..|+..|-.+..+....... +.....+..+++++.. .++.|+..++..+.+...
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999777654333 3344777788888875 366799999999988865
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] | Back alignment and domain information |
|---|
Probab=82.55 E-value=41 Score=33.93 Aligned_cols=124 Identities=9% Similarity=0.017 Sum_probs=80.2
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
..+...+...+.++++.+....+.++.++..-..-.... ...-++.-..-.+..-..++.....+|..++.-.++..+
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445555666666677777777777777776322111000 111122222222222235777888999999887777666
Q ss_pred HHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy10729 234 CVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 234 ~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~ 279 (363)
.+.. .+....++.++-+++.++...|.-.|...... ..+.++.+++
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6664 57888999999999999999999999888764 4566777776
|
The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain. |
| >PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=82.49 E-value=44 Score=31.48 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred ChhhHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH--cCchHHH
Q psy10729 168 DVETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ--AGGLQKM 244 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~-~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L 244 (363)
+...+...+.-+.-.... ++++.+.+++.-.+..+-..-...++++...++..|..-.. .+.-.+..+. ....+.+
T Consensus 247 s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMK-lP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 247 SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMK-LPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHH
Confidence 334455555555554433 34444555543223332222223567888888888887544 3333334443 3456667
Q ss_pred HHhhcC----ChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 245 KKLLSS----SRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 245 ~~~l~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
.+++-+ .+.+.-...+.+|+.+....-+.+.++-+
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEMtd~eidrItqitK 364 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEMTDTEIDRITQITK 364 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhcCHHHHHHHHHhhh
Confidence 777733 34555566777888777654444444433
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=82.27 E-value=9.4 Score=29.38 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=58.9
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
.++..+.+-++++++.++..|+..|-.+..+ .+..+..+...++++.|..++....+..++..++..+..-+..-
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4567777888889999999999998888866 34567777788899999999986555788888888877666543
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=82.23 E-value=40 Score=30.76 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=81.6
Q ss_pred hHHHHHHHhhccCC-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc------CCChhhHHHHHHHHHHhhcC
Q psy10729 155 ICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD------SEETTILTAALRTVGNIATG 227 (363)
Q Consensus 155 ~~i~~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~------~~~~~v~~~a~~~L~nl~~~ 227 (363)
.-.+++-.-++..| ..-+..|+..+..++.........++ ...+..++. +.++.-+..|+..++.++..
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 34455555555444 34567888888888855443322222 223333333 34567889999999999874
Q ss_pred Chh------------HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhccc
Q psy10729 228 NDH------------QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLDNLLEIALQVGE 294 (363)
Q Consensus 228 ~~~------------~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~l~~ll~~~~~~~~ 294 (363)
... ....+....++|.|. --.+..|-++..|++.+..+-.. ++++
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~--------------------- 343 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ--------------------- 343 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH---------------------
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH---------------------
Confidence 421 234555566677666 22244688889999999888754 2222
Q ss_pred chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 295 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 295 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+ .+.++.+...+.+++.-|+..|..++
T Consensus 344 -------l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 -------L--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -------H--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -------H--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1 13566677777788777777776553
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=82.23 E-value=10 Score=27.60 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=60.3
Q ss_pred CChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcC-
Q psy10729 197 GVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG- 269 (363)
Q Consensus 197 g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~- 269 (363)
|++..+...+.+.+ ..-+..+++++..+..-..... ..+.|.++..|++. .++.+..|..+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665544 2458999999998876322222 14566677777653 678999999998888875
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy10729 270 NSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~ 288 (363)
+++....+++..+..+++.
T Consensus 86 ~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 86 KEEELGPLLDQIFAAILPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 7788888888777776653
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=82.13 E-value=52 Score=32.05 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=64.6
Q ss_pred HhHHHHHHHhhcc----CChhhHHHHHHHHHHhcc----CChhhHHHHHhcCChHHHHHhhc----CCChhhHHHHHHHH
Q psy10729 154 KICLPLLNQLIHT----TDVETLSDICWALSYISD----GHNDKIQAVVDTGVVPRLVELLD----SEETTILTAALRTV 221 (363)
Q Consensus 154 ~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~----~~~~~~~~~~~~g~l~~l~~lL~----~~~~~v~~~a~~~L 221 (363)
...+..+..++++ .++.++..++-+++.+.. ..+.. ...+...+++.+.+.|. ..+...+...+.+|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 3456666677765 355677777777776652 22211 01111234555555553 34556678899999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhhc---CChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
+|+-. +. .++.+...+. ..+..+|..|+|+|.+++...+...
T Consensus 471 GN~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v 515 (574)
T smart00638 471 GNAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV 515 (574)
T ss_pred hccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH
Confidence 99854 22 2233444443 2357899999999999986555443
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=82.00 E-value=11 Score=27.28 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=60.7
Q ss_pred CChHHHHHhhcC----CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcC-
Q psy10729 197 GVVPRLVELLDS----EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG- 269 (363)
Q Consensus 197 g~l~~l~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~- 269 (363)
|++..+...+.+ .+...+..++.++..+..-...... .+.|.++..|+.. .++++..|..+...+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 555566666655 3456899999999999873333332 4566677777543 458999999888888876
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy10729 270 NSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~ 288 (363)
+++....+++..+..+++.
T Consensus 86 ~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 86 DEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 7788888888777766653
|
; GO: 0004674 protein serine/threonine kinase activity |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=82.00 E-value=7.9 Score=29.66 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=56.5
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~ 268 (363)
++..+.+-++++++.+...|+..|-.++.+. +.....+...+++..|++++.. .++.|+..+...+..++.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3677888889999999999999999998854 4455667777889899999953 467888888888777763
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG2038|consensus | Back alignment and domain information |
|---|
Probab=81.99 E-value=39 Score=33.49 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=83.6
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
..++..|..+-+.+-+.++..++.++..+..+.+++-. .++..++.-|.+++..+...|-+.|.+|.+..|...-
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 45667777777777789999999999999988887533 3477889999999999999999999999887777654
Q ss_pred HHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy10729 234 CVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 234 ~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~ 279 (363)
.+++ .+..++- +-+...+.+|+.+|..+... ......++++
T Consensus 378 Vvi~-----EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 378 VVID-----EIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred ehHH-----HHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 3433 2444442 23456677788888877753 3344455555
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=81.85 E-value=25 Score=28.27 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=55.9
Q ss_pred CChHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 197 GVVPRLVELLDSEETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 197 g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
-.+|.+++=|...+...+-.|...+..+... ..+..-.++ ..++..+...+++.++++...+..+|..++..+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3577777777777777888888888888775 444444444 367888889999999999999999999996544
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=81.34 E-value=15 Score=26.14 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+..+.--+.++--...+..-..+.+..|++-++.++......++..|..++ ..+.....+.+.|++..|.++-...
T Consensus 5 ~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~-~~~~a~~~l~~iG~~~fL~klr~~~ 83 (98)
T PF14726_consen 5 VRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLL-KSPYAAQILRDIGAVRFLSKLRPNV 83 (98)
T ss_pred HHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH-hCcHHHHHHHHccHHHHHHHHHhcC
Confidence 344444443344433222222224466677777777877778999999999998 4577788888889998877777666
Q ss_pred CHHHHHHHHHH
Q psy10729 83 HLNLAEQATWA 93 (363)
Q Consensus 83 ~~~v~~~a~~~ 93 (363)
++..+...-.+
T Consensus 84 ~~~~~~~id~i 94 (98)
T PF14726_consen 84 EPNLQAEIDEI 94 (98)
T ss_pred CHHHHHHHHHH
Confidence 66655444333
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.24 E-value=41 Score=30.22 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhC
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~ 122 (363)
|.....+|..+.. .+ ....++..+..++. +.++......+.++..=+... .+. ....+..+..-+.
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~ 71 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLK 71 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhc
Confidence 3344455555553 12 22244566666665 456666666666655444221 111 1334556666666
Q ss_pred CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----CChhh----HHHHHHHHHHhccCChhhHHH--
Q psy10729 123 PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVET----LSDICWALSYISDGHNDKIQA-- 192 (363)
Q Consensus 123 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v----~~~al~~L~~l~~~~~~~~~~-- 192 (363)
+... .+++..+.++........+.........++|.+...++. +-+.. ...+.-.+. +..........
T Consensus 72 ~kk~-~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~ 149 (339)
T PF12074_consen 72 DKKP-PVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKN 149 (339)
T ss_pred CCCC-cHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhh
Confidence 5553 477777777777776221222334456677777777743 22221 111111111 21111111010
Q ss_pred H----HhcCChHHHH---HhhcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHH
Q psy10729 193 V----VDTGVVPRLV---ELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWT 262 (363)
Q Consensus 193 ~----~~~g~l~~l~---~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~ 262 (363)
. +..+-=|.++ ++.+. .+++.....++++..+....+.....-....+...++.++-+. .+++|+.|..+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0 0000001100 12222 3445566677777777654333221111224566688888777 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy10729 263 ISNITAGNSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 263 L~nl~~~~~~~~~~~~~~~l~~ll~~ 288 (363)
+..+...+++.....+-+++...+..
T Consensus 230 l~~l~~~~~~~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 230 LKKLYASNPELLSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99999988776555555666666553
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=80.06 E-value=11 Score=28.70 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=55.5
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~ 268 (363)
+..+.+-|.++++.++..|+..|-.++.++ +.....+.+.+++..|..++... .+.|+..+...+..++.
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 667888888999999999999999998864 44556677778999999998765 23488888888877764
|
Unpublished observations. Domain of unknown function. |
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=80.03 E-value=19 Score=25.66 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH 317 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 317 (363)
...+..|+...+.+++..+..+...+..++..... .+.+.+.|+.+-|.++...
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------------------~~~l~~iG~~~fL~klr~~ 82 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------------------AQILRDIGAVRFLSKLRPN 82 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------------------HHHHHHccHHHHHHHHHhc
Confidence 45677788888887777788888888887766543 3788999999999999988
Q ss_pred CcHHHHHHHHHHHHh
Q psy10729 318 ENETVYQKCYKIISM 332 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~ 332 (363)
-++..+.....+++.
T Consensus 83 ~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 83 VEPNLQAEIDEILDQ 97 (98)
T ss_pred CCHHHHHHHHHHHhc
Confidence 889988888877764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 363 | ||||
| 3tpo_A | 529 | Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP | 2e-78 | ||
| 2c1t_A | 454 | Structure Of The Kap60p:nup2 Complex Length = 454 | 4e-77 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-76 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 2e-76 | ||
| 3fex_C | 467 | Crystal Structure Of The Cbc-Importin Alpha Complex | 5e-76 | ||
| 3rz9_A | 510 | Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt | 6e-76 | ||
| 4htv_A | 509 | Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex | 7e-76 | ||
| 3ukw_B | 510 | Mouse Importin Alpha: Bimax1 Peptide Complex Length | 7e-76 | ||
| 1ejl_I | 460 | Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti | 7e-76 | ||
| 1q1s_C | 466 | Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid | 7e-76 | ||
| 4ba3_A | 496 | Mimp_alphadibb_a89nls Length = 496 | 8e-76 | ||
| 1ee5_A | 424 | Yeast Karyopherin (Importin) Alpha In A Complex Wit | 9e-76 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 1e-75 | ||
| 1bk5_A | 422 | Karyopherin Alpha From Saccharomyces Cerevisiae Len | 1e-75 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 2e-75 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 2e-75 | ||
| 1bk6_A | 422 | Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng | 2e-75 | ||
| 3l3q_A | 427 | Mouse Importin Alpha-Peptm Nls Peptide Complex Leng | 3e-75 | ||
| 1y2a_C | 428 | Structure Of Mammalian Importin Bound To The Non-Cl | 3e-75 | ||
| 1ial_A | 453 | Importin Alpha, Mouse Length = 453 | 4e-75 | ||
| 2ynr_A | 461 | Mimp_alphadibb_b54nls Length = 461 | 4e-75 | ||
| 2c1m_A | 424 | Nup50:importin-Alpha Complex Length = 424 | 4e-75 | ||
| 3ve6_A | 426 | Crystal Structure Analysis Of Venezuelan Equine Enc | 4e-75 | ||
| 3btr_C | 427 | Ar-Nls:importin-Alpha Complex Length = 427 | 4e-75 | ||
| 3tpm_A | 422 | Crystal Structure Of Mal Rpel Domain In Complex Wit | 5e-75 | ||
| 2jdq_A | 450 | C-Terminal Domain Of Influenza A Virus Polymerase P | 5e-70 | ||
| 3tj3_A | 447 | Structure Of Importin A5 Bound To The N-Terminus Of | 6e-70 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 2e-31 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 4e-28 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 2e-25 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 4e-23 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 4e-23 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 1e-20 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 3e-15 | ||
| 1luj_A | 514 | Crystal Structure Of The Beta-CateninICAT COMPLEX L | 8e-05 | ||
| 1i7x_A | 538 | Beta-CateninE-Cadherin Complex Length = 538 | 9e-05 | ||
| 2bct_A | 516 | The Armadillo Repeat Region From Murine Beta-Cateni | 9e-05 | ||
| 1jpw_A | 540 | Crystal Structure Of A Human Tcf-4 BETA-Catenin Com | 9e-05 | ||
| 2z6h_A | 644 | Crystal Structure Of Beta-Catenin Armadillo Repeat | 9e-05 | ||
| 3tx7_A | 527 | Crystal Structure Of Lrh-1BETA-Catenin Complex Leng | 9e-05 | ||
| 1t08_A | 519 | Crystal Structure Of Beta-CateninICAT HELICAL Domai | 9e-05 | ||
| 2gl7_A | 550 | Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX | 9e-05 | ||
| 4djs_A | 518 | Structure Of Beta-Catenin In Complex With A Stapled | 9e-05 | ||
| 3ouw_A | 540 | Structure Of Beta-Catenin With Lef-1 Length = 540 | 9e-05 | ||
| 1jdh_A | 529 | Crystal Structure Of Beta-Catenin And Htcf-4 Length | 9e-05 | ||
| 1qz7_A | 533 | Beta-Catenin Binding Domain Of Axin In Complex With | 9e-05 | ||
| 1g3j_A | 532 | Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma | 9e-05 | ||
| 3sla_A | 168 | X-Ray Structure Of First Four Repeats Of Human Beta | 1e-04 | ||
| 3sl9_A | 167 | X-Ray Structure Of Beta Catenin In Complex With Bcl | 1e-04 | ||
| 2z6g_A | 780 | Crystal Structure Of A Full-Length Zebrafish Beta-C | 2e-04 |
| >pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 | Back alignment and structure |
|
| >pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 | Back alignment and structure |
|
| >pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 | Back alignment and structure |
|
| >pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 | Back alignment and structure |
|
| >pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 | Back alignment and structure |
|
| >pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 | Back alignment and structure |
|
| >pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
| >pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 | Back alignment and structure |
|
| >pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 | Back alignment and structure |
|
| >pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 | Back alignment and structure |
|
| >pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 | Back alignment and structure |
|
| >pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 | Back alignment and structure |
|
| >pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 | Back alignment and structure |
|
| >pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 | Back alignment and structure |
|
| >pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 | Back alignment and structure |
|
| >pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 | Back alignment and structure |
|
| >pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 | Back alignment and structure |
|
| >pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514 | Back alignment and structure |
|
| >pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538 | Back alignment and structure |
|
| >pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516 | Back alignment and structure |
|
| >pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540 | Back alignment and structure |
|
| >pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644 | Back alignment and structure |
|
| >pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527 | Back alignment and structure |
|
| >pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519 | Back alignment and structure |
|
| >pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550 | Back alignment and structure |
|
| >pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518 | Back alignment and structure |
|
| >pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540 | Back alignment and structure |
|
| >pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529 | Back alignment and structure |
|
| >pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533 | Back alignment and structure |
|
| >pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532 | Back alignment and structure |
|
| >pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human Beta-Catenin Length = 168 | Back alignment and structure |
|
| >pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9 Length = 167 | Back alignment and structure |
|
| >pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 321 bits (823), Expect = e-107
Identities = 161/376 (42%), Positives = 207/376 (55%), Gaps = 20/376 (5%)
Query: 5 ATRSARKMLSKERHPPIDELI-EAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQ 62
AT+ RK+LSKE +PPIDE+I GVV VE L EN QFE+ W LTNIASG S Q
Sbjct: 40 ATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99
Query: 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122
T VI A A+P F++LLSS ++ EQA WALGNIAGD RD +L +P +L L
Sbjct: 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS 159
Query: 123 PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182
T RN VWA+SNLCR K+P P+F K+ CL +L+ L+ +D + L+D CWALSY+
Sbjct: 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL 219
Query: 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 242
SDG NDKIQAV+D GV RLVELL + +++ ALR VGNI TG+D QT ++ LQ
Sbjct: 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279
Query: 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL------- 295
+ LLSS + +I KEA WTISNITAGN QI VI + L LQ E
Sbjct: 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339
Query: 296 -----------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIEN 344
+ + E G ++ L L + + Q + + + N
Sbjct: 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
Query: 345 GDTIEFNPQPVNTVNG 360
G I + G
Sbjct: 400 GTGINPYCALIEEAYG 415
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 5e-53
Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 17/331 (5%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFE-ATWALTNIASGTSEQTMTVINANA 71
++ + D +++ ++P ++L +N T A WAL+N+ G S +
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
+ LL ++ A WAL ++ ++ G +++ L+ N +
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV-VS 252
Query: 132 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 191
+ A+ N+ + L L L+ + + CW +S I+ G+ +IQ
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312
Query: 192 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS 250
V+D + P L+ +L + E A + N +G Q +++ G ++ + LL+
Sbjct: 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372
Query: 251 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEK 310
IV+ A + NI + E +N L+EE+ GL+K
Sbjct: 373 MDSKIVQVALNGLENILRLGEQ--------------EAKRNGTGINPYCALIEEAYGLDK 418
Query: 311 LEALQHHENETVYQKCYKIISMAFNDSAENS 341
+E LQ HEN+ +YQK + +I F E+S
Sbjct: 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-39
Identities = 60/337 (17%), Positives = 123/337 (36%), Gaps = 23/337 (6%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--TVINANAIPKFLQLLS-SP 82
+ +E++ ++P Q AT + S + + + +F++ L
Sbjct: 18 GGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE 77
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
+ L ++ W L NIA + +++ G +P + L+ VWA+ N+
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV-QEQAVWALGNIAG 136
Query: 143 -NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201
+ I PLL + + WALS + G + + + +
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261
L LL +T +L A + ++ G + + VI AG +++ +LL + +V A
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 262 TISNITAGNSRQIDHVIQEGL------------DNLLEIALQV------GELNQMALLVE 303
+ NI G+ Q ++ +++ + A G Q+ +++
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316
Query: 304 ESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 340
+ + LQ E T + + I + SAE
Sbjct: 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 44/298 (14%), Positives = 103/298 (34%), Gaps = 20/298 (6%)
Query: 54 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA--GDGARARDLLLGL 111
++++ S AT + +++
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63
Query: 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 171
G + + + ++ T W ++N+ + +P+ +L+ + +
Sbjct: 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH 230
WAL I+ V+D ++P L++L + T+ A+ + N+ G
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183
Query: 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL-------- 282
+ + L + LL S +++ +A W +S ++ G + +I VI G+
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243
Query: 283 ----DNLLEIALQ-VGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
++ AL+ VG + + ++ L+ L L E++ ++ IS
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-101
Identities = 160/382 (41%), Positives = 211/382 (55%), Gaps = 24/382 (6%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT 59
++ AT R++LS+E PPID +I+AGVVP VE + +++ Q EA WALTNIASGT
Sbjct: 103 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S QT V++A+A+P F+QLL + + + EQA WALGN+AGD RD +L M IL
Sbjct: 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 222
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+
Sbjct: 223 LFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL---- 295
L ++ LLSS + NI KEA WTISNITAGN+ QI VI L L L+V E
Sbjct: 342 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401
Query: 296 -----------------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338
+ + LV + G ++ L L + + + +
Sbjct: 402 EACWAISNASSGGLQRPDIIRYLVSQ-GCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460
Query: 339 ENSIENGDTIEFNPQPVNTVNG 360
+ G I N + G
Sbjct: 461 ADKEARGLNINENADFIEKAGG 482
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 189 bits (480), Expect = 2e-55
Identities = 73/352 (20%), Positives = 146/352 (41%), Gaps = 25/352 (7%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
++ + D +++ + + L + P+ ATW L+N+ G Q + + A+
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
P +L+ S A WA+ ++ A ++ + +++ L+ +
Sbjct: 260 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV-QTP 318
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192
+ A+ N+ + LP L L+ + + CW +S I+ G+ ++IQA
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 378
Query: 193 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV---IQAGGLQKMKKLLS 249
V+D ++P LV+LL+ E A + N ++G + D + + G ++ + LL
Sbjct: 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438
Query: 250 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309
+ I++ + NI + + +N+ A +E++GG+E
Sbjct: 439 IADNRIIEVTLDALENILKMGEA--------------DKEARGLNINENADFIEKAGGME 484
Query: 310 KLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVNTVNGF 361
K+ Q +EN+ +Y+K YKII F + + E P N N F
Sbjct: 485 KIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMA-------PQNAGNTF 529
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 18/303 (5%)
Query: 56 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTM 114
+S +++Q +P+ Q L+S + AT I + D+++ G +
Sbjct: 73 SSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVV 132
Query: 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD 174
P+++ ++ N P WA++N+ + +PL QL++T VE
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ 192
Query: 175 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC 234
WAL ++ D V+ + ++ L +S + +++ A T+ N+ G Q D
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 235 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL------------ 282
+ + L + KL+ S + +A W IS ++ G I VI +
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 283 DNLLEIALQ-VGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337
+ AL+ VG + + +V +G L L L E + ++ IS +
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372
Query: 338 AEN 340
E
Sbjct: 373 TEQ 375
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 1e-19
Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 145 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI-SDGHNDKIQAVVDTGVVPRLV 203
+ +++ LP + Q +++ D++ I S H I V+ GVVPRLV
Sbjct: 77 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 136
Query: 204 ELLDSEE-TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262
E + + + A + NIA+G QT V+ A + +LL + V + ++A W
Sbjct: 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 196
Query: 263 ISNITAGNSRQIDHVIQEG-LDNLLEIA-----------------LQVGELNQMALLVEE 304
+ N+ ++ D+V+Q ++ +L + L G+ Q V
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV-V 255
Query: 305 SGGLEKLEALQHHENETVYQK---CYKIISMAFNDSAENSIENG 345
S L L L + + +S ++ + I+
Sbjct: 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 308 bits (789), Expect = e-101
Identities = 147/287 (51%), Positives = 197/287 (68%), Gaps = 5/287 (1%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L + QFE+ WALTNIASGT
Sbjct: 73 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNIAGDG+ RDL++ G + +LA
Sbjct: 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192
Query: 120 LVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL 282
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 4e-24
Identities = 45/301 (14%), Positives = 111/301 (36%), Gaps = 23/301 (7%)
Query: 54 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLG 112
+ + + ++ ++ ++S +L QAT A + + D ++ G
Sbjct: 41 DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100
Query: 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL 172
+P+ ++ + + WA++N+ + +P L+ +
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET-----TILTAALRTVGNIATG 227
WAL I+ + V+ G + L+ LL + L T+ N+
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL----- 282
+ L + +LL + ++ ++ W IS +T G + +I+ V+++G+
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 283 -------DNLLEIALQ-VGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330
++ AL+ +G + ++ V ++G L +L + + ++ +
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340
Query: 331 S 331
S
Sbjct: 341 S 341
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA---- 56
+ A + S I L+ G++ + LL ++ A++NI
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Query: 57 --SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100
T + ++ + + K L + ++ + + +
Sbjct: 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 7e-69
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 2/222 (0%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 64
ATR + + + + I +I+AG +P V+LL N EA WAL+NIASG +EQ
Sbjct: 32 ATRKFSQ-ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
VI+A A+P +QLLSSP+ + ++A WAL NIA G ++ G +P ++ L+
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150
Query: 125 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
L+ +WA+SN+ N LP L QL+ + + + L + WALS I+
Sbjct: 151 NEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
G N++ QAV + G + +L +L E I A + + +
Sbjct: 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 8e-51
Identities = 97/311 (31%), Positives = 141/311 (45%), Gaps = 68/311 (21%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+P + L+ ++ Q AT + I S +EQ VI+A A+P +QLLS
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS 64
Query: 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140
SP+ + ++A WAL NIA G QI A++
Sbjct: 65 SPNEQILQEALWALSNIA------------SGGNEQIQAVIDAG---------------- 96
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P
Sbjct: 97 ---------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
LV+LL S IL AL + NIA+G + Q VI AG L + +LLSS I++EA
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 201
Query: 261 WTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENE 320
W +SNI +G + Q V+E+G LEKLE LQ HENE
Sbjct: 202 WALSNIASGGNEQKQ-------------------------AVKEAGALEKLEQLQSHENE 236
Query: 321 TVYQKCYKIIS 331
+ ++ + +
Sbjct: 237 KIQKEAQEALE 247
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 3e-66
Identities = 60/359 (16%), Positives = 125/359 (34%), Gaps = 31/359 (8%)
Query: 9 ARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN 68
LS R + + ++G +P V++L + F A L N+ M V
Sbjct: 83 TLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141
Query: 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT 128
A + K + LL+ ++ T L +A ++ ++L G ++ +++ T
Sbjct: 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 201
Query: 129 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188
L + L + P + + L + + + W L +SD
Sbjct: 202 LLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260
Query: 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248
+ G++ LV+LL S++ ++T A + N+ N V Q GG++ + + +
Sbjct: 261 QEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 249 --SSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEG----LDNLLE------------ 287
+ R +I + A + ++T+ + + V + LL
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 288 ---IALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE 343
L + N L E G + +L L ++ ++ + E
Sbjct: 378 GLIRNLALCPANHAPLR--EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 5e-48
Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 7/281 (2%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANA 71
LSK+ + +V V + + N T L N+ S E + + +
Sbjct: 44 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGG 102
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
IP +++L SP ++ A L N+ A+ + G + +++AL+ FL
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLA 161
Query: 132 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 191
+ L + L ++ T E L + + +
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 192 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 251
A+V+ G + L L ++ L T+ N++ D T G L + +LL S
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSD 278
Query: 252 RVNIVKEAAWTISNITAGNSRQIDHVIQEG-LDNLLEIALQ 291
+N+V AA +SN+T N + V Q G ++ L+ L+
Sbjct: 279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 2e-43
Identities = 40/269 (14%), Positives = 111/269 (41%), Gaps = 5/269 (1%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL- 79
D + +P +LL+DE+ +A + ++ + + + + + ++ +
Sbjct: 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69
Query: 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139
++ + A L N++ + G +P ++ ++ + L + + N
Sbjct: 70 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHN 127
Query: 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199
L ++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +G
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 259
LV ++ + L V + + +++AGG+Q + L+ +V+
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 260 AWTISNITAGNSRQIDHVIQEGLDNLLEI 288
WT+ N++ ++Q ++ L L+++
Sbjct: 248 LWTLRNLSDAATKQE--GMEGLLGTLVQL 274
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 1e-39
Identities = 52/339 (15%), Positives = 98/339 (28%), Gaps = 54/339 (15%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
++EAG + L D + W L N++ ++Q + +Q
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQ 273
Query: 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR-NIVWA 136
LL S +N+ A L N+ + + + ++ +G + ++ V + + A
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333
Query: 137 ISNLCRNKNPAPDFEKIKI---CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193
+ +L A + LP++ +L+H L L +
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATG---------------------NDHQT 232
+ G +PRLV+LL + H
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453
Query: 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292
+ + +LL S NI + AA + +
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---------------------- 491
Query: 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
+ A +E G L L H NE V ++
Sbjct: 492 ----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-38
Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 4/231 (1%)
Query: 51 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110
A+ N+ + Q + AIP+ +LL+ + +A + ++ A ++
Sbjct: 1 AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170
+ I+ +Q R + NL ++ K +P L +++ +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG-GIPALVKMLGSPVDS 116
Query: 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230
L L + AV G + ++V LL+ L + +A GN
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281
++ +GG Q + ++ + + + + + S +++ G
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 47/343 (13%), Positives = 116/343 (33%), Gaps = 14/343 (4%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
L+ ++ +G V ++ T + + S S ++ A +
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 229
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
L+ P L + W L N++ D A ++ + GL + ++ L+ + +
Sbjct: 230 QALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGL--LGTLVQLLGSDDINV-VTC 285
Query: 133 IVWAISNLCRNKNP-APDFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDK- 189
+SNL N ++ L+ ++ D E + AL +++ H +
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 190 --IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247
AV +P +V+LL L A + + + G + ++ +L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405
Query: 248 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGG 307
L + + + + + +++ +++ L +A +++
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA----RDVHNRIVIRGLNT 461
Query: 308 LEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 349
+ L + E + + ++ +A + A +IE
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 504
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-33
Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 28/274 (10%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
+ G++ V+LL ++ N A L+N+ + M V I ++ +
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 80 --SSPHLNLAEQATWALGNIAGDGA---RARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+ ++ E A AL ++ A++ + +P ++ L+ P + ++ V
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG--------- 185
I NL + +P L QL+ +T +
Sbjct: 378 GLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 186 ------------HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
+ +P V+LL S I A + +A + +
Sbjct: 437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-E 495
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267
+ G + +LL S + AA + ++
Sbjct: 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 9e-63
Identities = 58/344 (16%), Positives = 123/344 (35%), Gaps = 27/344 (7%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 64
T LS R + + ++G +P V++L + F A L N+ M
Sbjct: 76 CTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
V A + K + LL+ ++ T L +A ++ ++L G ++ +++
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194
Query: 125 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
T L + L + P + + L + + + W L +SD
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSD 253
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
+ G++ LV+LL S++ ++T A + N+ N V Q GG++ +
Sbjct: 254 AATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 245 KKLL--SSSRVNIVKEAAWTISNITAGN---SRQIDHVIQEG----LDNLLEIALQVGEL 295
+ + + R +I + A + ++T+ + + V + LL +
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370
Query: 296 NQMALL-------------VEESGGLEKLEALQHHENETVYQKC 326
L + E G + +L L ++ ++
Sbjct: 371 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 7e-48
Identities = 45/332 (13%), Positives = 125/332 (37%), Gaps = 21/332 (6%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
+ D + +P +LL+DE+ +A + ++ + + + + + ++
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 78 LLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
+ + + A L N++ + G +P ++ ++ + L +
Sbjct: 64 TMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITT 121
Query: 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196
+ NL ++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181
Query: 197 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
G LV ++ + L V + + +++AGG+Q + L+ +V
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241
Query: 257 KEAAWTISNITAGNSRQID---------HVIQEGLDNLLEIALQV------GELNQMALL 301
+ WT+ N++ ++Q ++ N++ A + ++
Sbjct: 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301
Query: 302 VEESGGLEKLEAL--QHHENETVYQKCYKIIS 331
+ GG+E L + + E + + +
Sbjct: 302 CQV-GGIEALVRTVLRAGDREDITEPAICALR 332
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-43
Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 9/282 (3%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANA 71
LSK+ + +V V + + N T L N+ S E + + +
Sbjct: 41 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGG 99
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
IP +++L SP ++ A L N+ A+ + G + +++AL+ FL
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLA 158
Query: 132 NIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190
+ L + L+N + T + L L +S ++K
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK- 217
Query: 191 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 250
A+V+ G + L L ++ L T+ N++ D T G L + +LL S
Sbjct: 218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGS 274
Query: 251 SRVNIVKEAAWTISNITAGNSRQIDHVIQEG-LDNLLEIALQ 291
+N+V AA +SN+T N + V Q G ++ L+ L+
Sbjct: 275 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 3e-39
Identities = 53/354 (14%), Positives = 103/354 (29%), Gaps = 54/354 (15%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
++EAG + L D + W L N++ ++Q + +Q
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQ 270
Query: 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR-NIVWA 136
LL S +N+ A L N+ + + + ++ +G + ++ V + + A
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330
Query: 137 ISNLCRNKNPAPDFEKIKI---CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193
+ +L A + LP++ +L+H L L +
Sbjct: 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 390
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATG---------------------NDHQT 232
+ G +PRLV+LL + H
Sbjct: 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 450
Query: 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292
+ + +LL S NI + AA + + A + +
Sbjct: 451 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAE----------------- 492
Query: 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGD 346
+E G L L H NE V ++ D ++ +
Sbjct: 493 --------AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 4e-36
Identities = 44/293 (15%), Positives = 95/293 (32%), Gaps = 28/293 (9%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
+ G++ V+LL ++ N A L+N+ + M V I ++ +
Sbjct: 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314
Query: 80 --SSPHLNLAEQATWALGNIAGDGA---RARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+ ++ E A AL ++ A++ + +P ++ L+ P + ++ V
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI---- 190
I NL + +P L QL+ +T + ++
Sbjct: 375 GLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433
Query: 191 -----------------QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
+ +P V+LL S I A + +A + +
Sbjct: 434 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-E 492
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286
+ G + +LL S + AA + ++ + + L + L
Sbjct: 493 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 545
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-34
Identities = 44/344 (12%), Positives = 112/344 (32%), Gaps = 16/344 (4%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANA 71
L+ ++ +G V ++ + + L ++ S ++ A
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 225
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
+ L+ P L + W L N++ A G + ++ L+ + +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINV-VT 281
Query: 132 NIVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDK 189
+SNL N ++ L+ ++ D E + AL +++ H +
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 341
Query: 190 ---IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246
AV +P +V+LL L A + + + G + ++ +
Sbjct: 342 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401
Query: 247 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESG 306
LL + + + + + +++ +++ L +A +++
Sbjct: 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA----RDVHNRIVIRGLN 457
Query: 307 GLEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 349
+ L + E + + ++ +A + A +IE
Sbjct: 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 501
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 5e-19
Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 26/233 (11%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+ + +P+ V+LL + +AT L + + AIP+ +QLL
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404
Query: 81 SPHLNLAEQATWALGNIAGDG---------------------ARARDLLLGLGTMPQILA 119
H + + + R ++ GL T+P +
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L+ R + L ++K A E PL L+H+ + + L
Sbjct: 465 LLYSPIENI-QRVAAGVLCELAQDKEAAEAIEAEGATAPLTE-LLHSRNEGVATYAAAVL 522
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232
+S+ + + V L +E A + A G
Sbjct: 523 FRMSEDKPQDYKKRLS---VELTSSLFRTEPMAWNETADLGLDIGAQGEPLGY 572
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 2e-56
Identities = 40/285 (14%), Positives = 118/285 (41%), Gaps = 5/285 (1%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 64
++ + + + D + +P +LL+DE+ +A + ++ + +
Sbjct: 127 PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186
Query: 65 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 123
+ + + ++ + + + + A + L N++ + G +P ++ ++
Sbjct: 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGS 245
Query: 124 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183
+ L + + + NL ++ A ++ L + L++ T+V+ L+ L ++
Sbjct: 246 PVDSV-LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 304
Query: 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243
G+ + ++ +G LV ++ + L V + + +++AGG+Q
Sbjct: 305 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEI 288
+ L+ +V+ WT+ N++ ++Q ++ L L+++
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQL 407
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 159 bits (402), Expect = 3e-43
Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 55/346 (15%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
++EAG + L D + W L N++ ++Q + +QLL
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLG 409
Query: 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT-TFLRNIVWAISN 139
S +N+ A L N+ + + + ++ +G + ++ V + A+ +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469
Query: 140 LCRNKNPAPDFEKIKI---CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196
L A + LP++ +L+H L L + +
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 529
Query: 197 GVVPRLVELLDSEETTILTAALRTVGNIATG---------------------NDHQTDCV 235
G +PRLV+LL + H +
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL 295
+ +LL S NI + AA + + A + +
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAE-------------------- 628
Query: 296 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 340
+E G L L H NE V ++ M+ + +
Sbjct: 629 -----AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 144 bits (363), Expect = 4e-38
Identities = 48/343 (13%), Positives = 115/343 (33%), Gaps = 14/343 (4%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
L+ ++ +G V ++ T + + S S ++ A +
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
L+ P L + W L N++ D A ++ + GL + ++ L+ + +
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGL--LGTLVQLLGSDDINV-VTC 418
Query: 133 IVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDK- 189
+SNL N ++ L+ ++ D E AL +++ H D
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478
Query: 190 --IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247
AV +P +V+LL L A + + + G + ++ +L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 248 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGG 307
L + + + + + +++ +++ L +A +++
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA----RDIHNRIVIRGLNT 594
Query: 308 LEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 349
+ L + E + + ++ +A + A +IE
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 637
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 48/315 (15%), Positives = 100/315 (31%), Gaps = 30/315 (9%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
+ G++ V+LL ++ N A L+N+ + M V I ++ +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Query: 80 --SSPHLNLAEQATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+ ++ E A AL ++ D A++ + +P ++ L+ P + ++ V
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG--------- 185
I NL + +P L QL+ +T +
Sbjct: 511 GLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 186 ------------HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
+ +P V+LL S I A + +A + +
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAE 628
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--EIALQ 291
+ G + +LL S + AA + ++ + + L + L +
Sbjct: 629 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMT 688
Query: 292 VGELNQMALLVEESG 306
E + L + G
Sbjct: 689 WNETGDLGLDIGAQG 703
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 7e-55
Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 17/193 (8%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP + Q +++ D + L LS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 276 HVIQEGLDNLLEIALQVGEL-----------------NQMALLVEESGGLEKLEALQHHE 318
VI G L L N+ V+E+G LEKLE LQ HE
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192
Query: 319 NETVYQKCYKIIS 331
NE + ++ + +
Sbjct: 193 NEKIQKEAQEALE 205
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 1e-47
Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
+P V+ L+ + A L+ IASG +EQ VI+A A+P +QLLSS
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141
P+ + ++A WAL NIA G ++ G
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAG----------------------------- 96
Query: 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P
Sbjct: 97 --------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142
Query: 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261
LV+LL S IL AL + NIA+G + Q V +AG L+K+++L S I KEA
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 262 TISNITA 268
+ + +
Sbjct: 203 ALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 9e-40
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 43/214 (20%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
++ + I +I+AG +P V+LL N EA WAL+NIASG +EQ VI+A A+
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
P +QLLSSP+ + ++A WAL NIA G QI A++
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIAS------------GGNEQIQAVIDAG-------- 138
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192
LP L QL+ + + + L + WALS I+ G N++ QA
Sbjct: 139 -----------------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 175
Query: 193 VVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
V + G + +L +L E I A + + +
Sbjct: 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 3e-49
Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 23/290 (7%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELL-----------DDENPNTQFEATWALT 53
A K+ E H + E G + ELL D + + A ALT
Sbjct: 52 AVCVLMKLSFDEEHR--HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 109
Query: 54 NIASGTSEQTMTVIN-ANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGL 111
N+ G T+ + + + L S +L + L N++ ++ L +
Sbjct: 110 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 169
Query: 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFEKIKICLPLLNQLIH---T 166
G++ ++ + L++++ A+ NL + +N A L+ L + T
Sbjct: 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229
Query: 167 TDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 223
+ + L +S + D Q + + + L++ L S TI++ A T+ N
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289
Query: 224 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273
++ N + + G + +K L+ S I +A + N+ A +
Sbjct: 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 5e-46
Identities = 49/288 (17%), Positives = 91/288 (31%), Gaps = 28/288 (9%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 83
+ + + A L + S E + + +LL
Sbjct: 30 HEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 88
Query: 84 ---------LNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPNTPTTFLRNI 133
+ L A AL N+ + L + G M ++A ++ + + I
Sbjct: 89 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 147
Query: 134 VWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSYIS-DGHNDKI 190
+ NL + ++ L+ + TL + AL +S +K
Sbjct: 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207
Query: 191 QAVVDTGVVPRLVELLDSEETTIL-------TAALRTVGNIATGNDHQTDCVIQAGGLQK 243
G + LV L T LR V ++ N+ + + LQ
Sbjct: 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG----LDNLLE 287
+ + L S + IV A T+ N++A N + + + G L NL+
Sbjct: 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 47/323 (14%), Positives = 109/323 (33%), Gaps = 42/323 (13%)
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+ + + + + +P + A L ++ D R + LG + I
Sbjct: 22 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80
Query: 120 LVQPNTPTTFL----------RNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTD 168
L+Q + L R A++NL +K C+ L + +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140
Query: 169 VETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELL-DSEETTILTAALRTVGNIAT 226
+ I L +S + + + + G V L+E + ++ + L + L + N++
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200
Query: 227 GND-HQTDCVIQAGGLQKMKKLLS----SSRVNIVKEAAWTISNIT---AGNSRQIDHVI 278
++ D G L + L+ ++ + I++ + N++ A N +
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260
Query: 279 QEG-LDNLLEIALQVGELN-----------------QMALLVEESGGLEKLEALQHHENE 320
+ L LL+ L+ L + + + G + L+ L H +++
Sbjct: 261 ENNCLQTLLQH-LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 321 TVYQKCYKIIS-MAFNDSAENSI 342
+ + + N A+
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKD 342
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 37/168 (22%)
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
+ + + + + A+ + ++ +H+ + + GGLQ +
Sbjct: 20 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAI 78
Query: 245 KKLLSSSR-----------VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293
+LL + + + A ++N+T G+
Sbjct: 79 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV---------------------- 116
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 340
A L G + L A E+E + Q ++ +++ +
Sbjct: 117 --ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-45
Identities = 53/288 (18%), Positives = 104/288 (36%), Gaps = 23/288 (7%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELL-----------DDENPNTQFEATWALT 53
A K+ E H + E G + ELL D + + A ALT
Sbjct: 168 AVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225
Query: 54 NIASGTSEQTMTVI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGL 111
N+ G T+ + + L S +L + L N++ ++ L +
Sbjct: 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285
Query: 112 GTMPQILALVQPNTPTTFLRNIVWAISNLC----RNKNPAPDFEK-IKICLPLLNQLIHT 166
G++ ++ + L++++ A+ NL NK + + + L T
Sbjct: 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345
Query: 167 TDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 223
+ + L +S + D Q + + + L++ L S TI++ A T+ N
Sbjct: 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405
Query: 224 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 271
++ N + + G + +K L+ S I +A + N+ A
Sbjct: 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-37
Identities = 52/288 (18%), Positives = 92/288 (31%), Gaps = 28/288 (9%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 83
+ + + A L + S E + + +LL
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 204
Query: 84 ---------LNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNI 133
+ L A AL N+ GD A L G M ++A ++ + + I
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED-LQQVI 263
Query: 134 VWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSYIS-DGHNDKI 190
+ NL + ++ L+ + TL + AL +S +K
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323
Query: 191 QAVVDTGVVPRLVELLDSEETTIL-------TAALRTVGNIATGNDHQTDCVIQAGGLQK 243
G + LV L T LR V ++ N+ + + LQ
Sbjct: 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG----LDNLLE 287
+ + L S + IV A T+ N++A N + + + G L NL+
Sbjct: 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 56/411 (13%), Positives = 130/411 (31%), Gaps = 85/411 (20%)
Query: 8 SARKMLSKERHPPIDELI-EAGVVPICVELLDDENPN------------TQFEATWALTN 54
+R +L+ + ++G +P+ ++LL + + + A+ AL N
Sbjct: 49 MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108
Query: 55 IASGTSEQTMTVINANAIPKFLQL------------------------LSSPHLNLAEQA 90
I + + Q+ + +P + A
Sbjct: 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPA 168
Query: 91 TWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL----------RNIVWAISNL 140
L ++ D R + LG + I L+Q + L R A++NL
Sbjct: 169 VCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227
Query: 141 CRNKNPAPDFEKIKIC-----LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-AVV 194
K +C + L + + + I L +S + + +
Sbjct: 228 TFGDVAN----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 283
Query: 195 DTGVVPRLVELL-DSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLS--- 249
+ G V L+E + ++ + L + L + N++ ++ D G L + L+
Sbjct: 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343
Query: 250 -SSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEGL------------DNLLEIALQV- 292
++ + I++ + N++ A N + + ++ A
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403
Query: 293 GEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSA 338
L + + + G + L+ L H +++ + + + N A
Sbjct: 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 2e-13
Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 18/183 (9%)
Query: 22 DELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINAN-AIPKFLQLL 79
L E G V +E + + +T AL N+++ +E + + A+ + L
Sbjct: 280 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339
Query: 80 SSPH----LNLAEQATWALGNIAGDGAR---ARDLLLGLGTMPQILALVQPNTPTTFLRN 132
+ L + E L N++ A R +L + +L ++ ++ T + N
Sbjct: 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI-VSN 398
Query: 133 IVWAISNLCRNKNPAPDFEKIKIC----LPLLNQLIHTTDVETLSDICWALSYISDGHND 188
+ NL NP ++ + + +L LIH+ AL +
Sbjct: 399 ACGTLWNLSAR-NPK---DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
Query: 189 KIQ 191
K +
Sbjct: 455 KYK 457
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 2/226 (0%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
++ + P E + + A L ++ + + L +
Sbjct: 35 RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
L +A +G + + A ++ +LGLG + ++L L+ + T ++AIS L R
Sbjct: 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
+ +L + + + + L + GH + + G+V +L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214
Query: 203 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248
V L+ +E + L + ++ T + +++LL
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELL 258
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 5e-13
Identities = 15/107 (14%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
L +E+ + + + + + + + + ++ + L N+ G E T+ + +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RDLLLGLGTMPQIL 118
+ + L+ + H E AL ++ D + R+ + ++L
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 3e-34
Identities = 30/262 (11%), Positives = 78/262 (29%), Gaps = 19/262 (7%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P V+ L ++ Q + + + V I K + LL SP+ N+ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 90 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149
A AL N+ + + + ++L++ + + + NL +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 150 FEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHNDKIQAV 193
I LP+L + D E + L +S +
Sbjct: 124 L--IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSR 252
+G++ L+ + + + ++ + ++++ ++
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 253 VNIVKEAAWTISNITAGNSRQI 274
++ + N+
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYD 263
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 5e-14
Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 29/262 (11%)
Query: 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 84
+G++ + + + ++ + + + + ++ +
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR-QLEYNARNA 240
Query: 85 NLAEQATWALGNIAGDG---------------ARARDLLLGLGTMPQILALVQPNTPTTF 129
+ +T N + + L + L L+ +
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 130 LRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISD 184
L A+ NL +K I LP + +L+ + + + + LS +S
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS- 359
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETT------ILTAALRTVGNIATGNDHQTDCVIQA 238
+ + V+ V P + LL S IL++A TV N+ +
Sbjct: 360 -RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418
Query: 239 GGLQKMKKLLSSSRVNIVKEAA 260
L + L SS EAA
Sbjct: 419 SMLNNIINLCRSSASPKAAEAA 440
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 7e-14
Identities = 53/358 (14%), Positives = 109/358 (30%), Gaps = 69/358 (19%)
Query: 22 DELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
E + V LL N Q + T L N++S + + A+A+P +
Sbjct: 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE--ELIADALPVLADRVI 137
Query: 81 SPHLNLAEQ----------------ATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
P + AT L N++ A + + G + ++A VQ
Sbjct: 138 IPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197
Query: 125 TPTTF-----LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ + N + + NL + ++ L E S C++
Sbjct: 198 VAASRCDDKSVENCMCVLHNLSYRLD-----AEVPTRYRQLEYNARNAYTEKSSTGCFSN 252
Query: 180 SYISDGHNDKIQA-------------VVDTGVVPRLVELL-DSEETTILTAALRTVGNIA 225
+N+ + + + + L+ S++ L A + N+
Sbjct: 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312
Query: 226 TGNDHQTDC-----VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT--AGNSRQIDHVI 278
+ ++ GL ++ +LL S ++V+ A +SN++ R + + +
Sbjct: 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV 372
Query: 279 QEGLDNLLEIALQVGELN-------------------QMALLVEESGGLEKLEALQHH 317
+ LL + Q+A S L + L
Sbjct: 373 FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 4e-10
Identities = 23/197 (11%), Positives = 59/197 (29%), Gaps = 45/197 (22%)
Query: 21 IDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASG-----TSEQTMTVINANAIPK 74
L + + + L+ + T AL N+ + + + + +P+
Sbjct: 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQ 335
Query: 75 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+LL S + ++ L N++ R ++G P++ L+ +T T
Sbjct: 336 IARLLQSGNSDVVRSGASLLSNMSRHPLLHR--VMGNQVFPEVTRLLTSHTGNT------ 387
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV 194
+ + LS C+ + + +
Sbjct: 388 -------------------------------SNSEDILSSACYTVRNLMASQPQLAKQYF 416
Query: 195 DTGVVPRLVELLDSEET 211
+ ++ ++ L S +
Sbjct: 417 SSSMLNNIINLCRSSAS 433
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 8/129 (6%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
++ +P LL N + L+N++ V+ P+ +LL+S
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383
Query: 83 HLN------LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
N + A + + N+ + + I+ L + +
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
Query: 137 ISNLCRNKN 145
+S++ +K
Sbjct: 444 LSDMWSSKE 452
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 1e-32
Identities = 53/367 (14%), Positives = 105/367 (28%), Gaps = 75/367 (20%)
Query: 8 SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI 67
S + S + P +P + +L + A L ++ + V
Sbjct: 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR 87
Query: 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTP 126
IP + LL P + A AL NI+ G + + +P ++ L++
Sbjct: 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD 147
Query: 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI------------------HTTD 168
I + NL + + + + L L + H
Sbjct: 148 MDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205
Query: 169 VETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSE------------------ 209
L++ L +S ++ + + + G+V L+ ++ +E
Sbjct: 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265
Query: 210 -------------ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
AA N T + + Q ++ LL S+ +
Sbjct: 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325
Query: 257 KE-AAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ 315
E +A I N+ AG + + + L + L
Sbjct: 326 LEASAGAIQNLCAGRWTY---------------------GRYIRSALRQEKALSAIADLL 364
Query: 316 HHENETV 322
+E+E V
Sbjct: 365 TNEHERV 371
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 98.9 bits (245), Expect = 8e-23
Identities = 63/393 (16%), Positives = 123/393 (31%), Gaps = 79/393 (20%)
Query: 8 SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTV 66
+ + L ++ + +P+ V LLD A AL NI+ G + + +
Sbjct: 70 AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129
Query: 67 INANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT 125
N + +P ++LL + ++L E T L N++ + + ++ ++ P++
Sbjct: 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHS 188
Query: 126 PTTF----------------LRNIVWAISNLCRNKNPA---------------------- 147
L N + N+ ++ A
Sbjct: 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248
Query: 148 ----PDFEKIKICLPLLNQLIHTTDVETLSD------ICWALSYISDGHNDKIQAVVDTG 197
D + ++ C+ LL L + E + + +
Sbjct: 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308
Query: 198 VVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTD----CVIQAGGLQKMKKLLSSSR 252
VV + LL +S+ IL A+ + N+ G + Q L + LL++
Sbjct: 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368
Query: 253 VNIVKEAAWTISNITAG--NSRQIDHVIQEGLDNLLEIALQVGELN-------------- 296
+VK A+ + N+ N I L L Q N
Sbjct: 369 ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428
Query: 297 -------QMALLVEESGGLEKLEALQHHENETV 322
+ A + E+ G+EKL + N +
Sbjct: 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 68.4 bits (166), Expect = 8e-13
Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 42/213 (19%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQT 63
A + + L + VV I + LL + + P + A+ N+ +G
Sbjct: 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344
Query: 64 ----MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+ A+ LL++ H + + A+ AL N+A D L+G +P ++
Sbjct: 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE--LIGKHAIPNLVK 402
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ + +T+ I +
Sbjct: 403 NLPGGQQNSSWNFSE-----------------------------------DTVISILNTI 427
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212
+ + + + + + +T + +LV + S +
Sbjct: 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 2e-12
Identities = 34/331 (10%), Positives = 91/331 (27%), Gaps = 31/331 (9%)
Query: 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG 101
P Q E + + +P+ + +L + A L ++
Sbjct: 20 PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79
Query: 102 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA--PDFEKIKICLPL 159
+ + + L +P ++ L+ A+ N+ ++ + L
Sbjct: 80 DKVKTDVRKLKGIPVLVGLLDHPKKEV-HLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL------------- 206
+ L D++ I L +S + K++ V + L + +
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV--DHALHALTDEVIIPHSGWEREPNE 196
Query: 207 -----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM-KKLLSSSRVN------ 254
E ++LT + N+++ + + GL ++ +
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256
Query: 255 IVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKL-EA 313
+V+ + N++ R+I + + L+ + +
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316
Query: 314 LQHHENETVYQKCYKIISMAFNDSAENSIEN 344
L+ + + + I
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYI 347
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 47/363 (12%), Positives = 102/363 (28%), Gaps = 61/363 (16%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-------- 64
L+ + + + + ++L N + + N+ + +Q M
Sbjct: 406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELA 465
Query: 65 ------------------------TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100
+ N L + N E L + G
Sbjct: 466 KFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525
Query: 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--- 157
R ++ G + +L + T R+ A++ + NP F +
Sbjct: 526 -KELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALARIGITINPEVSFSGQRSLDVIR 583
Query: 158 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 217
PLLN L + AL+ ++ + Q ++ V ++ L + + AA
Sbjct: 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643
Query: 218 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 277
+ + N+ D ++ + L A ++ IT+ + + + +
Sbjct: 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI 703
Query: 278 IQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337
+ + L+ L L + + V + II N
Sbjct: 704 L------------------------AIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739
Query: 338 AEN 340
E
Sbjct: 740 EEI 742
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 2e-29
Identities = 51/347 (14%), Positives = 100/347 (28%), Gaps = 19/347 (5%)
Query: 2 RMIATRSARKMLSKERHPPIDE---------LIEAGVVPICVELLDDENPNTQFEATWAL 52
MI K E H D L G+ L E+ N+Q L
Sbjct: 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVL 519
Query: 53 TNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA--GDGARARDLLLG 110
+ G E V+ + L++ AT AL I + +
Sbjct: 520 NAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170
L + +L L+Q + + A++NL + + + + +
Sbjct: 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY 638
Query: 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230
L + + + V L L + E+ TA + I + +
Sbjct: 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK 698
Query: 231 QTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIA 289
+ ++ A L + L+++ + I N+ + + + LL
Sbjct: 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL 758
Query: 290 LQVGELNQMALLVEESGGLEKLE------ALQHHENETVYQKCYKII 330
Q+ + + + L E + E V+ + KI
Sbjct: 759 GQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFAENSKIS 805
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 2e-22
Identities = 40/320 (12%), Positives = 88/320 (27%), Gaps = 44/320 (13%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE 61
IA+ ++ + + + L + ++ T A+T + +G +
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLD 280
Query: 62 QTMTVINA-NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
V+ + L + ++ A L + +A+ L + + L
Sbjct: 281 VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG--VDILKRL 338
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKN------PAPDFEKIKICLPLLNQLIHTT-DVETLS 173
+ + L P D +K+ LI D +
Sbjct: 339 YHSKNDGI-RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRR 397
Query: 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT- 232
L+Y++ K + + D + L++L + L + T N+ + Q
Sbjct: 398 WAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457
Query: 233 -------------------------------DCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261
+ G + L + N + A
Sbjct: 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIAR 517
Query: 262 TISNITAGNSRQIDHVIQEG 281
++ + G V+QEG
Sbjct: 518 VLNAV-CGLKELRGKVVQEG 536
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-26
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 21/202 (10%)
Query: 26 EAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83
+ V +L D P+ A + + SE V I K LQLL +
Sbjct: 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65
Query: 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143
++ AL N+ + + + L +P++L +++ + I + NL N
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
Query: 144 KNPAPDFEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHN 187
I L L + I D + ++ L +S
Sbjct: 126 DKLKNLM--ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA 183
Query: 188 DKIQAVVDT-GVVPRLVELLDS 208
D +A+ G++ LV +
Sbjct: 184 DGRKAMRRCDGLIDSLVHYVRG 205
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 7e-12
Identities = 25/187 (13%), Positives = 62/187 (33%), Gaps = 20/187 (10%)
Query: 113 TMPQILA-LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 171
T+ + ++ L + + + I + C K+ A + L QL+ + +
Sbjct: 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDH 230
+C AL + ND V + VPRL+++L + + + N+++ +
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128
Query: 231 QTDCVIQAGGLQ----------------KMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274
+ ++ L K +I + N+++ +
Sbjct: 129 KN--LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186
Query: 275 DHVIQEG 281
+ +
Sbjct: 187 KAMRRCD 193
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-11
Identities = 18/125 (14%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 167 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
+S + + ++ + V + +L++LL + + A + N+
Sbjct: 22 MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81
Query: 227 GNDHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL 285
++ V + G+ ++ ++L +R + K+ + N+++ + + +I E L L
Sbjct: 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTL 140
Query: 286 LEIAL 290
E +
Sbjct: 141 TENII 145
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 4e-12
Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 22/203 (10%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-SSPHLNLA 87
V+ +ELLDD+ A + IA + + + K LL S + L
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLT 87
Query: 88 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147
++ A G +A + L +P + A + T N+ +A+ + + NP
Sbjct: 88 QEIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKT-KINVSYALEEIAKA-NP- 139
Query: 148 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 207
+ + ++ + + E + + + + +PR++ LL
Sbjct: 140 ---MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP-----FLPRIINLLH 191
Query: 208 SEETTILTAALRTVGNIATGNDH 230
+ + +A+ + ++AT ND
Sbjct: 192 DGDEIVRASAVEALVHLATLNDK 214
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 4e-10
Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 22/203 (10%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
+L E + + L E E A +A E + IP
Sbjct: 65 DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIG 119
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
++AL IA ++ ++++ + I +
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNRED-KLTALNFIEAMGE 173
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
N F+ + LP + L+H D + AL +++ ++ + V+ +
Sbjct: 174 N-----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KR 222
Query: 203 VELLDSEETTILTAALRTVGNIA 225
+E L+ + + + +
Sbjct: 223 LEELNDTSSLVNKTVKEGISRLL 245
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 32/254 (12%), Positives = 65/254 (25%), Gaps = 44/254 (17%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN 85
+ LLDD N + + L +A+ ++ S +
Sbjct: 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYI 69
Query: 86 LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
+ + LG I ++ L +AL + + + + C+
Sbjct: 70 RRDIGAFILGQIKICKKCEDNVFNIL----NNMALNDKSACV--RATAIESTAQRCKKNP 123
Query: 146 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ +A+S I+ D +P L+ L
Sbjct: 124 IYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN-----------DKATIPLLINL 167
Query: 206 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265
L + A + N DC ++ L + EA +S
Sbjct: 168 LKDPNGDVRNWAAFAININKYDNSDIRDCFVEM---------LQDKNEEVRIEAIIGLSY 218
Query: 266 ITAGNSRQIDHVIQ 279
+ R + +
Sbjct: 219 R--KDKRVLSVLCD 230
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 17 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL 76
+ + + +V D++ N + +A++ I IP +
Sbjct: 117 QRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLI 165
Query: 77 QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 111
LL P+ ++ A +A+ D + RD + +
Sbjct: 166 NLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 34/206 (16%), Positives = 59/206 (28%), Gaps = 45/206 (21%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN 85
+ V ++ L DE+ + A AL I A+ ++ L
Sbjct: 48 DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGW 96
Query: 86 LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
+ + A ALG I RA + L+ AL F+R + A L +
Sbjct: 97 VRQSAAVALGQIG--DERAVEPLIK--------AL---KDEDWFVR--IAAAFALGEIGD 141
Query: 146 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ L + + D AL I V + +L
Sbjct: 142 ER--------AVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKL 182
Query: 206 LDSEETTILTAALRTVGNIATGNDHQ 231
++ A+ + + N H
Sbjct: 183 AETGTGFARKVAVNYLETHKSFNHHH 208
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 56/250 (22%)
Query: 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83
+ V + ++ L D++ + A +AL I A+ ++ L
Sbjct: 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED 63
Query: 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143
+ A ALG I RA + L+ AL + ++R A L +
Sbjct: 64 AWVRRAAADALGQIG--DERAVEPLIK--------ALKDED---GWVR--QSAAVALGQI 108
Query: 144 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
+ + L + + D +AL I D V L+
Sbjct: 109 GDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLI 149
Query: 204 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263
+ L E+ + +A +G I M+KL + K A +
Sbjct: 150 KALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198
Query: 264 SNITAGNSRQ 273
+ N
Sbjct: 199 ETHKSFNHHH 208
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 45/201 (22%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN 85
+ V ++ L DE+ + A AL I A+ ++ L
Sbjct: 43 DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGW 91
Query: 86 LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
+ + A ALG I RA + L+ AL + F+R + A L +
Sbjct: 92 VRQSAAVALGQIG--DERAVEPLIK--------ALKDED---WFVR--IAAAFALGEIGD 136
Query: 146 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ L + + D AL I V + +L
Sbjct: 137 ER--------AVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKL 177
Query: 206 LDSEETTILTAALRTVGNIAT 226
++ A+ + +
Sbjct: 178 AETGTGFARKVAVNYLETHKS 198
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 56/244 (22%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
+ V + ++ L D++ + A +AL I A+ ++ L
Sbjct: 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE 57
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
+ A ALG I RA + L+ AL ++R A L +
Sbjct: 58 DAWVRRAAADALGQIG--DERAVEPLIK--------AL---KDEDGWVR--QSAAVALGQ 102
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
+ + L + + D +AL I D V L
Sbjct: 103 IGDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPL 143
Query: 203 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262
++ L E+ + +A +G I M+KL + K A
Sbjct: 144 IKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
Query: 263 ISNI 266
+
Sbjct: 193 LETH 196
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 22/105 (20%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
R LS+ + L+E+ L +E+ + A W + N
Sbjct: 30 RDVSTALSRMGDEAFEPLLES---------LSNEDWRIRGAAAWIIGNFQ---------- 70
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 111
+ A+ ++LL + A +L I G+ R R + L
Sbjct: 71 -DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE--RVRAAMEKL 112
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+ + DEN + + + AL+ + A L+ LS+ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGA 61
Query: 90 ATWALGNIAGDGARARDLLLGL 111
A W +GN D RA + L+ L
Sbjct: 62 AAWIIGNF-QD-ERAVEPLIKL 81
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 4e-07
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
V+ + + +N + A A +I G + T A+P L L++ L + E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 89 QATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
W +G IA + + L G+ + L +Q + N W I NL
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGV--VQACLIGLQDHPKVA--TNCSWTIINLVEQLA 485
Query: 146 PAPDFEKIKICLPLLNQLIHTTD 168
A L++ LI +
Sbjct: 486 EATPSPIYNFYPALVDGLIGAAN 508
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-06
Identities = 36/281 (12%), Positives = 91/281 (32%), Gaps = 23/281 (8%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-----H 83
VV C+ L D +P +W + N+ +E T + I L+ +
Sbjct: 455 VVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513
Query: 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF-------------L 130
N A AL + + A ++ + L
Sbjct: 514 FNARASAFSALTTMV-EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL 572
Query: 131 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDK 189
++ + + K+P+ + + L +L+ D + D+ +A+S ++
Sbjct: 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG 632
Query: 190 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249
+ ++T P L++ L+ ++ + A+ + +I+ + A + + +
Sbjct: 633 FEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691
Query: 250 SSRVNIVKEAA-WTISNITAGNSRQIDHVIQEGLDNLLEIA 289
+ +K A +I + + + + +
Sbjct: 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQ 732
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 4/141 (2%)
Query: 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212
++ L + Q I + A I DG + + +P ++ L++ +
Sbjct: 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426
Query: 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGN 270
+ +G IA Q ++ L + +WTI N+
Sbjct: 427 VKETTAWCIGRIAD--SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL 484
Query: 271 SRQIDHVIQEGLDNLLEIALQ 291
+ I L++ +
Sbjct: 485 AEATPSPIYNFYPALVDGLIG 505
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 7e-07
Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 11/225 (4%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
+ + L + DEL+ ++P+ ELL + L IA G + +
Sbjct: 339 KCSAAALDVLANVYRDELLPH-ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY 397
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 126
+ IP +Q LS + W L A M ++L + +
Sbjct: 398 LP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456
Query: 127 TTFLRNIVWAISNLCRNKNP--APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
A + L P I L L + L + A+ ++D
Sbjct: 457 RV-QEAACSAFATLEEEACTELVPYLAYI---LDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 185 GHNDKIQAVVDTG-VVPRLVELL--DSEETTILTAALRTVGNIAT 226
+ ++P L++ +E L L + ++AT
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 4e-04
Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 6/183 (3%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
++P ++ L D+ + W L+ A Q + + L+ + + + E
Sbjct: 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 460
Query: 89 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148
A A + + +L+ L + L L + AI L +
Sbjct: 461 AACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518
Query: 149 DFEK-IKICLPLLNQLIHTT--DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ + I++ +P L Q + + + L + LS ++ + V R V L
Sbjct: 519 NKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP-VYQRCVNL 577
Query: 206 LDS 208
+
Sbjct: 578 VQK 580
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 1e-06
Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 42/285 (14%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
++ ++ + + +PN + + + NI + + A+ L+ L++
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLAN 509
Query: 82 P---HLNLAEQATWALGN--IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
+ AL I + L +P + L+ +TP
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569
Query: 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI--QAVV 194
L ++E + L L N L+ +++ V
Sbjct: 570 QIKL------TDNYEAL---LALTN-----------------LASSETSDGEEVCKHIVS 603
Query: 195 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG------LQKMKKLL 248
+ L+ E + + L + N+ + + KLL
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663
Query: 249 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQ--EGLDNLLEIALQ 291
S V + A +NI ++ E ++N +++
Sbjct: 664 QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 39/324 (12%), Positives = 94/324 (29%), Gaps = 29/324 (8%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
+ +++ ++P+ L DE + + A A NIA ++ + A +P Q
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED---LEALVMPTLRQAAED 253
Query: 82 PHLNLAEQATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS 138
+ + G DL+ + + + +
Sbjct: 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL---MKDCEAEVRAAASHKVKEFCE 310
Query: 139 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV 198
NL + +I LP + +L+ + S + + +S +
Sbjct: 311 NLSADCRENVIMSQI---LPCIKELVSDANQHVKSALASVIMGLSPILGKDN---TIEHL 364
Query: 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 258
+P + L E + + + + + + L + +L ++ +
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLA 421
Query: 259 AAWTISNI-TAGNSRQIDHVIQEGLDNLLE---IALQVGELNQMALLVEESGG------- 307
+ + D + L A++ + + LVE+ G
Sbjct: 422 IIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
Query: 308 LEKLEALQHHENETVYQKCYKIIS 331
+ K+ A+ N I+
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCIN 505
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 2e-04
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 10/165 (6%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
+ + + L EN +A AL + + T + A + LL SP +
Sbjct: 76 HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLESPDDMMRI 133
Query: 89 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL--------RNIVWAISNL 140
+ L + + + FL + I +
Sbjct: 134 ETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185
+ + +++ L +L + + +E + +S I DG
Sbjct: 194 IPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDG 238
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-04
Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
++A L D+++ V+P E + + + + A A I G +
Sbjct: 346 KAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPNT 125
+ A+P ++L+ P + + + A W +G I A + L + ++ +
Sbjct: 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEP 464
Query: 126 PTTFLRNIVWAISNLCRNKNPAPDF 150
N+ WA S+L A D
Sbjct: 465 RVA--SNVCWAFSSLAEAAYEAADV 487
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
++A L D+++ V+P E + + + + A A I G +
Sbjct: 346 KAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIA 98
+ A+P ++L+ P + + + A W +G I
Sbjct: 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.97 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.97 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.97 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.97 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.96 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.96 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.96 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.96 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.95 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.95 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.94 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.94 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.91 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.89 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.85 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.85 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.72 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.66 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.64 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.57 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.54 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.52 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.51 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.49 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.49 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.48 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.47 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.46 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.46 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.43 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.36 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.3 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.27 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.26 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 99.24 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.23 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.21 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.2 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.2 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.19 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 99.06 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.0 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.92 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.91 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.89 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.88 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.81 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.81 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.8 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.75 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.74 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.74 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.72 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.72 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.58 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.55 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.54 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.49 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.38 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.02 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.02 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.98 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.96 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 97.7 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.65 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.63 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.62 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.57 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.37 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.36 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.34 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.3 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.27 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 97.24 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.11 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.09 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.86 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.76 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.63 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 96.61 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 96.54 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.52 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.51 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.48 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 96.45 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 96.41 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 96.35 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.26 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 96.25 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.22 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.09 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 96.09 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 95.96 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 95.72 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 95.64 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.6 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 95.39 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 95.31 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 94.24 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.15 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 94.09 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 93.97 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 93.34 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 93.15 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 91.52 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 90.43 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.33 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 90.31 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 89.73 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 87.46 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 86.03 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 84.05 | |
| 1vdy_A | 140 | Hypothetical protein (RAFL09-17-B18); structural g | 82.53 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 80.6 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 80.25 |
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=387.22 Aligned_cols=361 Identities=48% Similarity=0.834 Sum_probs=308.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|++|+..+|++++.+.+++++.+++.|++|.|+++|+ ++++++|..|+|+|+|++.++++.+..+++.|++|.|+.+|+
T Consensus 74 q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 8899999999999999999999999999999999995 567899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKIC 156 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 156 (363)
++++++++.|+|+|+||+.+++..|..+...|++++|+.++...+. ..+.+.++|++++++.+..+........++
T Consensus 154 s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 233 (510)
T 3ul1_B 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 233 (510)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhH
Confidence 9999999999999999999999999999999999999999985542 357889999999999998788888888999
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
+|.|+.++++++++++..++++|++++..+++....+.+.|+++.|++++.++++.++..++++|+|++.+++.....++
T Consensus 234 lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------------------
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------- 279 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------------------------------------- 279 (363)
+.|+++.|+.++.++++.+++.|+|+|+|++.+++.+...+++
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 9999999999999999999999999999999988777666554
Q ss_pred -----------------------------HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 280 -----------------------------EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 280 -----------------------------~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+++.+|++.+++....+.++..++++||+++|+.|++|+|.+|+++|..+|
T Consensus 394 ~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455566666666666778889999999999999999999999999999999
Q ss_pred HhhcCCCccCcc-----CCCCccccCCCCCCCCCCCCC
Q psy10729 331 SMAFNDSAENSI-----ENGDTIEFNPQPVNTVNGFNF 363 (363)
Q Consensus 331 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 363 (363)
++||.++++++. ...+.|+|+++.. ++|||||
T Consensus 474 e~yf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 510 (510)
T 3ul1_B 474 EKYFSVEEEEDQNVVPETTSEGFAFQVQDG-APGTFNF 510 (510)
T ss_dssp HHHCC---------------------------------
T ss_pred HHHCCCccccccccCCCCCccccccCCCCC-CCCCCCC
Confidence 999998766555 3345799987766 6799999
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=379.59 Aligned_cols=361 Identities=48% Similarity=0.830 Sum_probs=307.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|++|+..++++++.+.+++++.+++.|++|.|+++| .+++++++..|+|+|+|++.++++.+..+++.|++|.|+.++.
T Consensus 93 q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~ 172 (529)
T 3tpo_A 93 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172 (529)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 789999999999999999999999999999999999 4667899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKIC 156 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 156 (363)
++++.+++.|+|+|+||+.+++..|..+...|++++|+.++...+. ..+.+.++|++++++.+..+........++
T Consensus 173 s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 252 (529)
T 3tpo_A 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 252 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhH
Confidence 9999999999999999999999999999999999999999985442 357889999999999998788888888999
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
+|.|+.++++++++++..++|+|++++.++++....+++.|+++.|+++|.++++.++..++++|+|++.+++.....++
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~ 332 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 332 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHh
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------------------
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------- 279 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------------------------------------- 279 (363)
+.|+++.|+.++.++++.++++|+|+|+|++.+++.+...+++
T Consensus 333 ~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~ 412 (529)
T 3tpo_A 333 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQ 412 (529)
T ss_dssp HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999988777666655
Q ss_pred -----------------------------HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 280 -----------------------------EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 280 -----------------------------~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+++.+|++.++.....+.++..++++||+++|+.|++|+|.+|+++|..+|
T Consensus 413 ~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 413 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455556666666666778888999999999999999999999999999999
Q ss_pred HhhcCCCccCcc-----CCCCccccCCCCCCCCCCCCC
Q psy10729 331 SMAFNDSAENSI-----ENGDTIEFNPQPVNTVNGFNF 363 (363)
Q Consensus 331 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 363 (363)
++||.++++++. ...+.|+|+++.. +.|+|||
T Consensus 493 e~yf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~f 529 (529)
T 3tpo_A 493 EKYFSVEEEEDQNVVPETTSEGFAFQVQDG-APGTFNF 529 (529)
T ss_dssp HHHC----------------------------------
T ss_pred HHHCCCccccccccCCCCCCcccccCCCCC-CCCCCCC
Confidence 999987766554 3345788987665 6699999
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=309.12 Aligned_cols=340 Identities=49% Similarity=0.818 Sum_probs=295.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|..|+.+|+++++...+++++.+++.|++|.|+++|.+++ +.++..|+++|++++.++++.+..+++.|++|.|+.++.
T Consensus 91 ~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 170 (528)
T 4b8j_A 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG 170 (528)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc
Confidence 6789999999988887778899999999999999997776 999999999999999888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++++.++..|+|+|++++.+++..+..+...|+++.|+.++....+..++..++|+|.+|+... +........+++|.|
T Consensus 171 ~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L 249 (528)
T 4b8j_A 171 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPAL 249 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHH
Confidence 9999999999999999998888888999999999999999965555799999999999999986 556667779999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
+.++.++++.++..++++|++++.+.+.....+++.|+++.++.+|.++++.++..|+++|+|++.+++...+.+++.|+
T Consensus 250 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 329 (528)
T 4b8j_A 250 ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA 329 (528)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 99999999999999999999999988887788899999999999999999999999999999999988888889999999
Q ss_pred hHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------HHHHHHHH---------
Q psy10729 241 LQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------EGLDNLLE--------- 287 (363)
Q Consensus 241 l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----------------------~~l~~ll~--------- 287 (363)
++.|+.++.++ ++.+++.|+|+|+|++.+++.++..+++ .++.++..
T Consensus 330 l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (528)
T 4b8j_A 330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 409 (528)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998 9999999999999999887776665554 11111111
Q ss_pred ----------------------------------HHHhcc-----cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy10729 288 ----------------------------------IALQVG-----ELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 328 (363)
Q Consensus 288 ----------------------------------~~~~~~-----~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 328 (363)
...... ..+.++..+.+.||++.|..+++++++++++.|.+
T Consensus 410 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~ 489 (528)
T 4b8j_A 410 LVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVK 489 (528)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 111100 12346788999999999999999999999999999
Q ss_pred HHHhhcCCCccCcc
Q psy10729 329 IISMAFNDSAENSI 342 (363)
Q Consensus 329 ~l~~~~~~~~~~~~ 342 (363)
++++||..+++++-
T Consensus 490 il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 490 ILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHHCC-------
T ss_pred HHHHHCCCcccccc
Confidence 99999998776654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=294.84 Aligned_cols=339 Identities=48% Similarity=0.751 Sum_probs=296.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|..|+.+|+++++...+++++.+++.|++|.|+++|.++ ++.++..|+++|++++.++++.+..+++.|++|.|+.++.
T Consensus 104 ~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 183 (530)
T 1wa5_B 104 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183 (530)
T ss_dssp HHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 678999999998887667788999999999999999876 8999999999999999888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++++.++..|+|+|++++.+++..+..+...|+++.|+.++.+.+ ..++..++|+|++|+.+.++........+++|.|
T Consensus 184 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L 262 (530)
T 1wa5_B 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262 (530)
T ss_dssp HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHH
Confidence 999999999999999999988888888899999999999999855 6899999999999999875666677778999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
+.++.++++.++..++++|++++...+.....+++.|+++.|+.++.++++.++..|+++|++++.+++...+.+++.|+
T Consensus 263 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 342 (530)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch
Confidence 99999999999999999999999888877788889999999999999999999999999999999988888888999999
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------HHHHHHHHHH--------
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------EGLDNLLEIA-------- 289 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----------------------~~l~~ll~~~-------- 289 (363)
++.|+.++.++++.+++.|+|+|+|++.+++++++.+++ .++.++...+
T Consensus 343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 422 (530)
T 1wa5_B 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422 (530)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999999999999999999887776665554 2222222110
Q ss_pred -------------------------------------Hhc-----ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy10729 290 -------------------------------------LQV-----GELNQMALLVEESGGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 290 -------------------------------------~~~-----~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
... ...+.++..+.+.||++.|..++++++++|++.|.
T Consensus 423 ~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~ 502 (530)
T 1wa5_B 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502 (530)
T ss_dssp HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 000 00133566788999999999999999999999999
Q ss_pred HHHHhhcCCCccCc
Q psy10729 328 KIISMAFNDSAENS 341 (363)
Q Consensus 328 ~~l~~~~~~~~~~~ 341 (363)
.+|.+||.++++++
T Consensus 503 ~il~~~~~~~~~~~ 516 (530)
T 1wa5_B 503 KIIETYFGEEEDAV 516 (530)
T ss_dssp HHHHHHSSSCC---
T ss_pred HHHHHHCCcccccc
Confidence 99999999877654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=280.51 Aligned_cols=340 Identities=50% Similarity=0.786 Sum_probs=289.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLDDE-NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|..|+..|+++++...++..+.+++. |+++.|+++|.++ ++.++..|+++|.+++..+++....+++.|++|.|+.++
T Consensus 37 r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 116 (450)
T 2jdq_A 37 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL 116 (450)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHH
Confidence 67899999999886555677888888 9999999999777 899999999999999988888888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+++++.++..++++|++++.+++..+..+...|+++.++.++.+..+..++..++|+|.+++.+.++........+++|.
T Consensus 117 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 196 (450)
T 2jdq_A 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999888888888899999999999996555799999999999999876344333444899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
++.++.++++.++..++++|++++...+.....+.+.|+++.+++++.++++.++..|+++|++++.+++...+.+++.|
T Consensus 197 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 276 (450)
T 2jdq_A 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276 (450)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc
Confidence 99999999999999999999999988777778888899999999999999999999999999999998888888889999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------HHHHHHHH---------
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------EGLDNLLE--------- 287 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----------------------~~l~~ll~--------- 287 (363)
+++.|+.++.++++.+++.|+|+|+|++.+++.+.+.+++ .++.++..
T Consensus 277 ~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 356 (450)
T 2jdq_A 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356 (450)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999877666655543 11222211
Q ss_pred ----------------------------------HHHhc-----ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy10729 288 ----------------------------------IALQV-----GELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 328 (363)
Q Consensus 288 ----------------------------------~~~~~-----~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 328 (363)
..... ...++++..+.+.||++.|..+++++++++++.|..
T Consensus 357 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 436 (450)
T 2jdq_A 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436 (450)
T ss_dssp HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 00000 001345678889999999999999999999999999
Q ss_pred HHHhhcCCCccCc
Q psy10729 329 IISMAFNDSAENS 341 (363)
Q Consensus 329 ~l~~~~~~~~~~~ 341 (363)
++.+||+++++++
T Consensus 437 ~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 437 LIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHHCCC----
T ss_pred HHHHHCCcccccC
Confidence 9999998887654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=278.47 Aligned_cols=331 Identities=15% Similarity=0.184 Sum_probs=264.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS- 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~- 80 (363)
|..|+.+|+++.. .+.+....+++.|++|.|+++|.+++++++..|+++|.|++.++++.+..+++.|++|.|+++|.
T Consensus 19 q~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~ 97 (457)
T 1xm9_A 19 QAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR 97 (457)
T ss_dssp HHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh
Confidence 7889999999654 33344558999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC--------CC-------CcHhHHHHHHHHHHHhhcCCC
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--------PN-------TPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~-------~~~~~~~~~~~~L~~l~~~~~ 145 (363)
++++++++.++|+|+||+.+ +..+..+.+ |++|.|++++. ++ .+.++.++++|+|+||+.++
T Consensus 98 ~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~- 174 (457)
T 1xm9_A 98 TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD- 174 (457)
T ss_dssp CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH-
T ss_pred CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCH-
Confidence 88899999999999999988 678888888 99999999993 22 23577889999999999873
Q ss_pred CCCCHHHHH-hHHHHHHHhhcc------CChhhHHHHHHHHHHhccCC--------------------------------
Q psy10729 146 PAPDFEKIK-ICLPLLNQLIHT------TDVETLSDICWALSYISDGH-------------------------------- 186 (363)
Q Consensus 146 ~~~~~~~~~-~~i~~l~~ll~~------~~~~v~~~al~~L~~l~~~~-------------------------------- 186 (363)
......... |+++.|+.++++ .+..+...++++|.+++...
T Consensus 175 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (457)
T 1xm9_A 175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS 254 (457)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccc
Confidence 222333334 899999999986 46678889999999987321
Q ss_pred ------------------hhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhH---H-HHHH-HcCchH
Q psy10729 187 ------------------NDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQ---T-DCVI-QAGGLQ 242 (363)
Q Consensus 187 ------------------~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~---~-~~l~-~~~~l~ 242 (363)
+...+.+++.|+++.++.+|.+. ++.+++.|+|+|+|++.++... . +.++ +.|++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~ 334 (457)
T 1xm9_A 255 DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334 (457)
T ss_dssp -----------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHH
T ss_pred hhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCch
Confidence 11223345567788999999755 6789999999999999866432 1 3344 689999
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH---------------------h-cccchHHH
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIAL---------------------Q-VGELNQMA 299 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~---------------------~-~~~~~~~~ 299 (363)
.|++++.+++.++++.|+|+|.|++.+. +...++. .++..|++... . .......+
T Consensus 335 ~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~ 412 (457)
T 1xm9_A 335 QIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA 412 (457)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999863 2233333 33443333221 1 12335677
Q ss_pred HHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCc
Q psy10729 300 LLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 300 ~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 338 (363)
..+.+.||+++|.+++.++ ++++++.|.++|.+||.+.+
T Consensus 413 ~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 413 KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 8889999999999999999 99999999999999998765
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=260.81 Aligned_cols=309 Identities=17% Similarity=0.191 Sum_probs=257.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCH----------HHHHHhcCCC--Chh-----HHH-------HHHHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVV----------PICVELLDDE--NPN-----TQF-------EATWALTNIAS 57 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l----------~~L~~lL~~~--~~~-----i~~-------~a~~~L~~l~~ 57 (363)
|.+|+++|.++.+...+ ..+...+.|++ +.+++++.+. +.+ ++. .|+|+|.|++.
T Consensus 99 ~~~a~~al~ni~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 99 RARASAALHNIIHSQPD-DKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHSCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCcc-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 67899999999887764 45666777888 7777778443 222 433 89999999984
Q ss_pred CChHhHHHHHhCCChHHHHHhcCC-----------CCHHHHHHHHHHHHHhhCCCCchhHHHhh-cCChHHHHHhhCCCC
Q psy10729 58 GTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGDGARARDLLLG-LGTMPQILALVQPNT 125 (363)
Q Consensus 58 ~~~~~~~~i~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~ 125 (363)
++++|..+.+.|+++.|+.++.. .++.+++.|+|+|.||+.+++..+..+.. .|++|.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 59999999999999999999941 23678999999999999887666666654 455999999999766
Q ss_pred cHhHHHHHHHHHHHhhcCCC-CCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHHHHHhccCChhhHHHHH-hcCChHHH
Q psy10729 126 PTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRL 202 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~g~l~~l 202 (363)
.+++..++|+|++|+...+ .....+...|++|.|+.+| .+.++.+++.++.+|+|++...++....+. ..|+++.|
T Consensus 257 -~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 257 -EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp -HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 6999999999999998532 2334455679999999975 567899999999999999985544445555 78999999
Q ss_pred HHhhcCCCh----hhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 203 VELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 203 ~~lL~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+++|.++++ +++..|+++|.|++. .+++.++.+++.|+++.|+.+|.+++.+++++|+|+|+|++..++++
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~-- 413 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-- 413 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH--
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHH--
Confidence 999987755 489999999999996 68888899999999999999999999999999999999999877665
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 276 HVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 276 ~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
+..+.+.|+++.|..++.++++.+++.|.++|.++..+.+
T Consensus 414 -----------------------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 414 -----------------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp -----------------------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred -----------------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 4688899999999999999999999999999999987754
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=273.90 Aligned_cols=313 Identities=14% Similarity=0.083 Sum_probs=264.2
Q ss_pred ChhHHHHHHHHhhcCCCCC-------------------------------cHHHHHHcCCHHHHHHhcCCCChhHHHHHH
Q psy10729 1 MRMIATRSARKMLSKERHP-------------------------------PIDELIEAGVVPICVELLDDENPNTQFEAT 49 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~-------------------------------~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~ 49 (363)
+|..|+.+|.++....+.. .++.+++.|++|.|++++.++++.++..|+
T Consensus 437 i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa 516 (810)
T 3now_A 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA 516 (810)
T ss_dssp GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHH
Confidence 4678899999987643211 137889999999999999999999999999
Q ss_pred HHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH---hhcCChHHHHHhhCCCCc
Q psy10729 50 WALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL---LGLGTMPQILALVQPNTP 126 (363)
Q Consensus 50 ~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~---~~~g~i~~L~~ll~~~~~ 126 (363)
|+|+|++ .+++++..+++.|++|.|+.++.+.++..++.|+|+|.|++...... ..+ ...|++|+|+.+|.++.+
T Consensus 517 ~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~-~~~~~~~~~~aIppLv~LL~~~~~ 594 (810)
T 3now_A 517 RVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE-VSFSGQRSLDVIRPLLNLLQQDCT 594 (810)
T ss_dssp HHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH-HHTTTHHHHHTHHHHHHTTSTTSC
T ss_pred HHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh-hhhcchhhhcHHHHHHHHhCCCCc
Confidence 9999999 46789999999999999999999999999999999999998543221 111 124699999999986544
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVEL 205 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~l 205 (363)
...+..++|+|.||+..++.........|++|.|+.++.++++.++..|+++|+|++.+++.. ..+++ .|.++.|+.+
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-HHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-HHHHhccCcHHHHHHH
Confidence 455678999999999986443444566789999999999999999999999999999877755 44554 7899999999
Q ss_pred hcCCChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10729 206 LDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDN 284 (363)
Q Consensus 206 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ 284 (363)
+.+++..++..|+|+|+|++.+++...+.+++ .|+++.|+.++.++++++++.|+|+|.|++.+++++
T Consensus 674 L~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~----------- 742 (810)
T 3now_A 674 CEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI----------- 742 (810)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH-----------
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH-----------
Confidence 99999999999999999999988888889998 899999999999999999999999999999877654
Q ss_pred HHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC---cHHHHHHHHHHHHhhcCCCccCc
Q psy10729 285 LLEIALQVGELNQMALLVEESGGLEKLEALQHHE---NETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 285 ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~---~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
...+.+.|+++.|..++... +.++++.|..+|+.+......+.
T Consensus 743 --------------~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 743 --------------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp --------------HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred --------------HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 47899999999999997544 89999999999998776554433
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=270.21 Aligned_cols=305 Identities=14% Similarity=0.124 Sum_probs=253.7
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh---------------------
Q psy10729 3 MIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTS--------------------- 60 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--------------------- 60 (363)
..|+..|..+ +... .....++ +.|++|.|+++|+++++.+++.|+++|+|++.+.+
T Consensus 397 ~~AveaLayL-S~~~-~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~ 474 (810)
T 3now_A 397 RWAADGLAYL-TLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPE 474 (810)
T ss_dssp HHHHHHHHHH-TTSH-HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCC
T ss_pred HHHHHHHHHH-hCCc-HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcc
Confidence 3455555553 3222 2234444 57999999999999999999999999999997542
Q ss_pred --------HhH---HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhH
Q psy10729 61 --------EQT---MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF 129 (363)
Q Consensus 61 --------~~~---~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 129 (363)
..+ ..+++.|++|.|+.+++++++.+++.|+|+|+|++.+ +.+|..+.+.|++|+|+.+|.+++ ...
T Consensus 475 ~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~ 552 (810)
T 3now_A 475 EHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT-EKG 552 (810)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC-HHH
T ss_pred ccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC-HHH
Confidence 122 6788999999999999999999999999999999975 568999999999999999999876 488
Q ss_pred HHHHHHHHHHhhcCCCCCCCH--HHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh
Q psy10729 130 LRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 130 ~~~~~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL 206 (363)
++.++|+|.+|+.+.++...+ ....+++|.|+.+|+++.. ..+..|+++|+|++..++.....+++.|+++.|+.++
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL 632 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999865432111 1235689999999987533 4457899999999999887778899999999999999
Q ss_pred cCCChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy10729 207 DSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL 285 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~l 285 (363)
.++++.++..|+++|+|++.+++ ....+++ .|.++.|+.++.+++..+++.|+|+|+|++.+++.++
T Consensus 633 ~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~----------- 700 (810)
T 3now_A 633 MEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC----------- 700 (810)
T ss_dssp HSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-----------
T ss_pred cCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-----------
Confidence 99999999999999999998655 4455554 7899999999999999999999999999998766553
Q ss_pred HHHHHhcccchHHHHHHHH-cCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 286 LEIALQVGELNQMALLVEE-SGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 286 l~~~~~~~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
..+.+ .|+++.|.+++.+++.++++.|.+++.++....
T Consensus 701 --------------~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 701 --------------EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp --------------HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 34555 899999999999999999999999999987643
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=252.64 Aligned_cols=269 Identities=19% Similarity=0.199 Sum_probs=231.5
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-----------CChhHHHHHHHHHHHhcCCChHhHHHHHhC-C
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTVINA-N 70 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~ 70 (363)
-.|+.+|.++..++ +..+.+++.|+++.|+.+|.+ .++.++..|+|+|.|++.+++..+..+... |
T Consensus 50 ~~A~~aL~nls~d~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 50 CPAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp HHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 36889999976653 567999999999999999942 246789999999999998877788877655 5
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC-CCCC
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK-NPAP 148 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~ 148 (363)
++|.|+++|+++++++++.++|+|+||+.. ++..+..+.+.|++|.|+++|....+.++++.++++|.+|+... +.+.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 599999999999999999999999999975 56688899999999999998653333689999999999999843 2222
Q ss_pred CHHHHHhHHHHHHHhhccCCh----hhHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 149 DFEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
.+....|.+|.|+.+|.+.++ ++++.++++|.|++. ..++....+.+.|+++.|+++|.+++..+++.|+++|
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 333357999999999988654 489999999999997 6777778899999999999999999999999999999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+|++.++++.++.+++.|+++.|+.++.++++++++.|+|+|.|++.+++.+
T Consensus 288 ~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999888999999999999999999999999999999999999999875543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=254.16 Aligned_cols=353 Identities=18% Similarity=0.222 Sum_probs=269.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-ChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|.+|+.+|+++.. ...+....+++.|++|.|+++|.+++.+++..|+++|.|++.+ +++.+..+++.|+||.|+.+|.
T Consensus 65 q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~ 143 (584)
T 3l6x_A 65 KSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR 143 (584)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHc
Confidence 7789999988654 3346778899999999999999999999999999999999975 6899999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-----------------CCCcHhHHHHHHHHHHHhhc
Q psy10729 81 S-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-----------------PNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 81 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----------------~~~~~~~~~~~~~~L~~l~~ 142 (363)
+ .+.++++.++++|+||+.. +..+..+. .+++|+|++++. +..+..++.+++++|.||+.
T Consensus 144 s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~ 221 (584)
T 3l6x_A 144 KARDMDLTEVITGTLWNLSSH-DSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS 221 (584)
T ss_dssp HCCSHHHHHHHHHHHHHHTTS-GGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHhCC-chhhHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhc
Confidence 6 6789999999999999985 56777777 467999999871 12236899999999999998
Q ss_pred CCCCCCCHHH-HHhHHHHHHHhhcc------CChhhHHHHHHHHHHhccCChhh-------------------------H
Q psy10729 143 NKNPAPDFEK-IKICLPLLNQLIHT------TDVETLSDICWALSYISDGHNDK-------------------------I 190 (363)
Q Consensus 143 ~~~~~~~~~~-~~~~i~~l~~ll~~------~~~~v~~~al~~L~~l~~~~~~~-------------------------~ 190 (363)
+.+.....+. ..|+++.|+.++++ .+....+.|+++|.||+...... .
T Consensus 222 ~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gv 301 (584)
T 3l6x_A 222 ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301 (584)
T ss_dssp SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGG
T ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhH
Confidence 7633233333 36778899999875 46678999999999999653211 1
Q ss_pred HHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChh----HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 191 QAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDH----QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~----~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
+.+.+.++++.++.+|. +.++.+++.|+++|.||+.+... ....+.+.++++.|+.+|.++++++++.|+|+|.|
T Consensus 302 e~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~n 381 (584)
T 3l6x_A 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381 (584)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11222345677888995 45788999999999999986522 22344457899999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHH-----------------------HHhc-ccchHHHHHHHHcCcHHHHHHHhcCC--c
Q psy10729 266 ITAGNSRQIDHVIQEGLDNLLEI-----------------------ALQV-GELNQMALLVEESGGLEKLEALQHHE--N 319 (363)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~ll~~-----------------------~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~~--~ 319 (363)
++.+...+ ..+-..++..|++. ...+ ......+..+.+.||++.|..++.+. .
T Consensus 382 Ls~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~ 460 (584)
T 3l6x_A 382 LAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460 (584)
T ss_dssp HHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSC
T ss_pred HhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCC
Confidence 99864211 12223444444432 1111 23456677899999999999998876 8
Q ss_pred HHHHHHHHHHHHhhcCCCccCcc---CCCCccccCCCCCCCC
Q psy10729 320 ETVYQKCYKIISMAFNDSAENSI---ENGDTIEFNPQPVNTV 358 (363)
Q Consensus 320 ~~v~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 358 (363)
+.+++.|.++|.++|.+.+--.. +-++.=-|-++.++|.
T Consensus 461 ~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~~~~~~~ 502 (584)
T 3l6x_A 461 EKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNAS 502 (584)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCCC-----
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhccccCCCC
Confidence 99999999999999987754333 6666666766665553
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=259.24 Aligned_cols=267 Identities=27% Similarity=0.406 Sum_probs=241.2
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|.+|+.+|.++.+... .....+++.|++|.|+++|.+++.+++..|+|+|+|++.+++..+..+++.|+++.|+.++.
T Consensus 136 ~q~~Aa~aL~nia~~~~-~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 136 IQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 37889999999876554 55688999999999999999999999999999999999889999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 81 SPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 81 ~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
.++ ..+.+.++|++.+++.+...........+++|.|+.++.+++ .+++..++|+|++++.+.+.........|
T Consensus 215 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~v~~~g 293 (529)
T 3tpo_A 215 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKG 293 (529)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHTTT
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhhhhhhHHHHHhcc
Confidence 654 457889999999999876555555556789999999999877 59999999999999987654445555679
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++|.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.++.++++.++..|+|+|+|++.+++...+.+
T Consensus 294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v 373 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 373 (529)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++.|+++.|+.++.+++++++++|+|+|+|++.+
T Consensus 374 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 374 VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999863
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=258.97 Aligned_cols=267 Identities=27% Similarity=0.410 Sum_probs=240.3
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|.+|+.+|.++.+... +..+.+++.|++|.|+++|.+++.+++..|+|+|+|++.+++..+..+.+.|+++.++.++.
T Consensus 117 lq~~Aa~aL~nias~~~-e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 117 IQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 47899999999876543 56788999999999999999999999999999999999888999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 81 SPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 81 ~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
+++ ..+++.++|++.+++.+...........+++|.|++++.+.+ .+++..++|+|++|+.+.+.........|
T Consensus 196 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 274 (510)
T 3ul1_B 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKG 274 (510)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred hccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhhhHHHHHhcc
Confidence 654 457889999999999876555555556789999999999877 58999999999999987644444555678
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+++.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.++.++++.++..|+|+|+|++.+++...+.+
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v 354 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++.|+++.|+.++.+++++++++|+|+|+|++.+
T Consensus 355 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999863
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=240.91 Aligned_cols=273 Identities=16% Similarity=0.192 Sum_probs=233.2
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----------CCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+....+..|+|+|.|++. +++.|..+.+.|+++.|+.+|.. .++.+++.|+|+|.||+.+++..+..+
T Consensus 44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334556689999999995 58999999999999999999942 236799999999999998876677666
Q ss_pred hhc-CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-CCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHHHHHhccC
Q psy10729 109 LGL-GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 109 ~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~ 185 (363)
... |++|.|+++|.+++ .+++..++|+|.+|+...+ .....+...|.+|.|+.+| ++.++++++.++++|++++..
T Consensus 123 ~~~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 544 55999999999776 5999999999999998632 2334455679999999974 667899999999999999986
Q ss_pred ChhhHHHHH-hcCChHHHHHhhcCCCh----hhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCChHhHHH
Q psy10729 186 HNDKIQAVV-DTGVVPRLVELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVK 257 (363)
Q Consensus 186 ~~~~~~~~~-~~g~l~~l~~lL~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 257 (363)
.++....+. ..|++|.|+++|.++++ ++++.|+++|.|++. .+++.++.+.+.|+++.|+.++.+++.++++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 655445555 78999999999987755 489999999999997 6888889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 258 EAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 258 ~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
+|+|+|+|++..++++ +..+.+.|+++.|.+++.++++.+++.|.++|.++..+.
T Consensus 282 ~A~~aL~nLa~~~~~~-------------------------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 282 NACGTLWNLSARNPKD-------------------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHTSSCHHH-------------------------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHH-------------------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999877665 468899999999999999999999999999999999875
Q ss_pred cc
Q psy10729 338 AE 339 (363)
Q Consensus 338 ~~ 339 (363)
++
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 44
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=251.72 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=229.8
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-----------CChhHHHHHHHHHHHhcCCChHhHHHHHhC-CC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTVINA-NA 71 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~ 71 (363)
+|+.+|.++..+ .++.+.+++.|++++|+.+|.. .++.++..|+|+|.|++.+++..+..+... |+
T Consensus 167 qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 788999997333 3567899999999999999941 346789999999999998877777777654 55
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc-CCCCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR-NKNPAPD 149 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~-~~~~~~~ 149 (363)
+|.|+.+|.++++++++.++|+|+||+.. ++..+..+.+.|++|.|+++|....+..+++.++.+|++|+. ..+.+..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999975 566888999999999999986544446899999999999998 4333333
Q ss_pred HHHHHhHHHHHHHhhccCCh----hhHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q psy10729 150 FEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 222 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~ 222 (363)
+....|++|.|+.+|.+.++ ++++.++++|+|++. .+++....+++.|+++.|+.+|.+++..+++.|+|+|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 33357999999999988654 489999999999996 67777888999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH
Q psy10729 223 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 223 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 271 (363)
|++.++++.++.+++.|+++.|+.++.++++++++.|+|+|.|++.+++
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9998889999999999999999999999999999999999999998754
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=221.70 Aligned_cols=241 Identities=28% Similarity=0.418 Sum_probs=223.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
|.++.|+++|.+++++++..|+++|.+++...++.+..+.+.|+++.++.+++++++.++..++++|++++.+++..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999989999999999999999888889999999999999999999999999999999999999988888999
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.+.|+++.++.++.+++ .+++..++|+|.+++...+.........++++.++.++.++++.++..++++|++++..++
T Consensus 82 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999776 6999999999999997553434445557899999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.....+.+.|+++.+++++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.+++++++++++.|+|+|.|++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 87788899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cC
Q psy10729 268 AG 269 (363)
Q Consensus 268 ~~ 269 (363)
..
T Consensus 241 ~~ 242 (252)
T 4hxt_A 241 SG 242 (252)
T ss_dssp HT
T ss_pred cC
Confidence 75
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=241.84 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=238.8
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
.+|.|+++|.+++++++..|+++|.+++.+++..+..+.+.|++|.|+++|+++++.++..|+|+|.||+.+++..+..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999998888888899999999999999999999999999999999999878899999
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc--------c--------CChhhH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH--------T--------TDVETL 172 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~--------~--------~~~~v~ 172 (363)
.+.|++|.|+++|....+.++++.++|+|.+|+.++ ........ |++|.|+.++. + .++++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999993334699999999999999984 44444455 99999999993 2 356778
Q ss_pred HHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcC------CChhhHHHHHHHHHHhhcCC-----------------
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGN----------------- 228 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~~~~----------------- 228 (363)
..++|+|+|++.. ++....+.+. |+++.|+.++.+ .+.++...++++|.|++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677888887 999999999986 45678889999999987321
Q ss_pred ---------------------------------hhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 229 ---------------------------------DHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 229 ---------------------------------~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
+...+.+++.|+++.|+.++.++ ++++++.|+|+|+|++.++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 11223455667889999999764 68999999999999998643220
Q ss_pred HHHHHHHHHHHHHHHHhcccchHH-HHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 275 DHVIQEGLDNLLEIALQVGELNQM-ALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 275 ~~~~~~~l~~ll~~~~~~~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
... +..+.+.||++.|.+++.+++.++++.|.++|.++..++
T Consensus 320 ---------------------~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 320 ---------------------SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp ---------------------HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred ---------------------HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 011 245667899999999999999999999999999998764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=221.77 Aligned_cols=240 Identities=34% Similarity=0.552 Sum_probs=220.6
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
...+.+.+.|.+++++++..|+++|.++...++..+..+.+.|++|.|+.+++++++.++..++++|++++.+++..+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56889999999999999999999998876567778889999999999999999999999999999999999888888999
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.+.|++|.|+.++.+++ ..++..++|+|.+++.+.+.........+++|.++.+++++++.++..++++|++++..++
T Consensus 92 i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999999999999876 6999999999999998864332445667899999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.....+.+.|+++.+++++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++++++++.|+|+|.|++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred c
Q psy10729 268 A 268 (363)
Q Consensus 268 ~ 268 (363)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=239.11 Aligned_cols=290 Identities=16% Similarity=0.176 Sum_probs=240.2
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCch
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARA 104 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~ 104 (363)
..+.++.|+++|.+++++++..|+++|.+++..+++.+..+.+.|+||.|+.+|+++++.+++.|+|+|.||+.+ ++..
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 468899999999999999999999999999988899999999999999999999999999999999999999985 5788
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc------------------c
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------------------T 166 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~------------------~ 166 (363)
+..+.+.|+||+|+++|.+..+.++++.++++|++|+.+++.+. ....+.+|.|+.++. .
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~--~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH--HHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH--HHHhccHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999975446899999999999998653322 233567999999761 2
Q ss_pred CChhhHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcC------CChhhHHHHHHHHHHhhcCChh---------
Q psy10729 167 TDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGNDH--------- 230 (363)
Q Consensus 167 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~~~~~~--------- 230 (363)
.++++++.+.++|.|++..+++....+++. |+++.|+.++.+ .+...++.|+++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999999887766777775 566899999875 4567899999999999875211
Q ss_pred ----------------HHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy10729 231 ----------------QTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293 (363)
Q Consensus 231 ----------------~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (363)
..+.+++.++++.|+.++. +.++.+++.|+|+|.|++.+...+.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~------------------- 344 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG------------------- 344 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH-------------------
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc-------------------
Confidence 1122233455677888995 4579999999999999998642220
Q ss_pred cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 294 ~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
..++..+++.+|++.|..|+.++++++++.|.++|.++..+..
T Consensus 345 --~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 345 --RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp --HHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred --HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 1234577788999999999999999999999999999987654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=238.23 Aligned_cols=275 Identities=27% Similarity=0.414 Sum_probs=244.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc-C
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-S 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll-~ 80 (363)
|..|+.+|.++.+... .....+++.|+++.|+.+|.++++.++..|+++|++++...+..+..+.+.|+++.|+.++ .
T Consensus 135 ~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~ 213 (528)
T 4b8j_A 135 QFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE 213 (528)
T ss_dssp HHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc
Confidence 6789999999766433 5668889999999999999999999999999999999988888999999999999999999 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++++.++..++|+|++++...+.. ......|++|.|+.++.+.+ .+++..++|+|.+++...+.........++++.+
T Consensus 214 ~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 214 HTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp TCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 778999999999999999876544 34456899999999998876 5999999999999998754333445567899999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
+.+|.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+.+++.|
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~ 371 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG 371 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 9999999999999999999999998888888899999999999999998 899999999999999998888888999999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
+++.|+.++.+++++++..|+|+|+|++.. ++++...+++
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999986 6666665544
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-28 Score=229.38 Aligned_cols=328 Identities=14% Similarity=0.172 Sum_probs=273.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++....+ ...+.+++.|++|.|++++.+++++++..++.+|.+++..+++.+..+.+.|+++.++.++++
T Consensus 118 ~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~ 196 (529)
T 1jdh_A 118 LFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh
Confidence 6789999999877654 456778899999999999999999999999999999998889999999999999999999986
Q ss_pred CC-HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 82 PH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 82 ~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
.+ +..+..++.+|.+++.. +..+..+.+.|+++.|+.++.+.+ .+++..++|+|.+++....... ...+++|.+
T Consensus 197 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L 271 (529)
T 1jdh_A 197 YTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE---GMEGLLGTL 271 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcCChhhH---HHHhHHHHH
Confidence 54 66778899999999965 667888989999999999998775 6899999999999998763322 235889999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChh---HHHHH
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDH---QTDCV 235 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~---~~~~l 235 (363)
+.++++++++++..++++|++++..++.....+.+.|+++.+++++.+. ++.++..|+++|+|++.+++. .+..+
T Consensus 272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i 351 (529)
T 1jdh_A 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 9999999999999999999999998877788899999999999999763 378999999999999886543 35678
Q ss_pred HHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH-----------------------
Q psy10729 236 IQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIAL----------------------- 290 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~----------------------- 290 (363)
.+.|+++.|+.++.+++ +.+++.|+|+|+|++.++..+ ..+++ +++..++....
T Consensus 352 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc
Confidence 89999999999999876 599999999999999875443 45554 22333333221
Q ss_pred --------------hcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 291 --------------QVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 291 --------------~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
.+......+..+.+.|+++.|..++.++++++++.|.+++.++..+
T Consensus 431 ~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 1112234456788999999999999999999999999999998755
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=231.87 Aligned_cols=275 Identities=27% Similarity=0.370 Sum_probs=239.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++..... +..+.+++.|+++.|+++|.+++++++..|+++|++++..++..+..+.+.|+++.++.++++
T Consensus 82 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 160 (450)
T 2jdq_A 82 QFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160 (450)
T ss_dssp HHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 6788899999766543 445677889999999999999999999999999999998888899999999999999999995
Q ss_pred -CCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 82 -PHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 82 -~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+++.++..++|+|++++.+. +..+... ..+++|.|+.++.+.+ ..++..++|+|.+++...+.........++++.
T Consensus 161 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 238 (450)
T 2jdq_A 161 QNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSD-TDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHH
Confidence 78999999999999999765 4433333 3889999999999776 599999999999999875333333445689999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
++.++.++++.++..++++|++++.+.+...+.+++.|+++.+++++.++++.++..|+++|++++.+++...+.+++.|
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999999999998888777888899999999999999999999999999999998888888899999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
+++.|+.++.++++++++.|+|+|+|++.+ +++..+.+++
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999975 6666555444
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-28 Score=233.25 Aligned_cols=328 Identities=14% Similarity=0.175 Sum_probs=273.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++....+ .....+++.|+++.|+++|.++++.++..++.+|.+++..+++.+..+.+.|+++.|++++++
T Consensus 115 ~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 115 LFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193 (644)
T ss_dssp HHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence 6789999999877653 556778899999999999988889999999999999998789999999999999999999987
Q ss_pred CC-HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 82 PH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 82 ~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
.+ +.+++.++.+|.+++.. +..+..+.+.|+++.|+.++...+ ..++..++|+|.+++....... ...++++.|
T Consensus 194 ~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~---~~~~~i~~L 268 (644)
T 2z6h_A 194 YTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE---GMEGLLGTL 268 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTCC---SCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhhh---hhhhHHHHH
Confidence 65 67889999999999964 678889999999999999998775 6999999999999998753321 234889999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC--hhhHHHHHHHHHHhhcCChh---HHHHH
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTVGNIATGNDH---QTDCV 235 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~--~~v~~~a~~~L~nl~~~~~~---~~~~l 235 (363)
+.++++++++++..++++|++++..++.....+.+.|+++.|++++.+.+ +.++..|+++|+|++..++. ....+
T Consensus 269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v 348 (644)
T 2z6h_A 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 99999999999999999999999988777788899999999999998643 68999999999999875442 33457
Q ss_pred HHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHh----------------------
Q psy10729 236 IQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQ---------------------- 291 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~~---------------------- 291 (363)
++.|+++.|+.++.+++ +.+++.|+|+|+|++.++..+ ..+++ .++..|+.....
T Consensus 349 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~ 427 (644)
T 2z6h_A 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427 (644)
T ss_dssp HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence 88999999999999875 699999999999999875444 55555 333333332211
Q ss_pred ---------------cccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 292 ---------------VGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 292 ---------------~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
+......+..+.+.|+++.|..++.++++++++.|.+++.++..+
T Consensus 428 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111223445788999999999999999999999999999998765
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=209.97 Aligned_cols=247 Identities=26% Similarity=0.379 Sum_probs=224.4
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
|.+|.++.++++++++++..++++|.+++..++..+..+.+.|+++.|++++.+++ .+++..++|+|.+++.+.+....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHH
Confidence 67899999999999999999999999999887778889999999999999999877 69999999999999987544444
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.....++++.++.++++++++++..++++|++++...+.....+.+.|+++.+++++.++++.++..++++|++++.+++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 55567899999999999999999999999999998877777888999999999999999999999999999999999888
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...+.+.+.|+++.|+.++.++++.++..|+++|.|++..++.. ...+.+.|+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------------------~~~l~~~~~i~ 215 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA-------------------------IKAIVDAGGVE 215 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH-------------------------HHHHHHTTHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-------------------------HHHHHHCCCHH
Confidence 88889999999999999999999999999999999999876554 45788899999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcCCCccCcc
Q psy10729 310 KLEALQHHENETVYQKCYKIISMAFNDSAENSI 342 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 342 (363)
.|.+++.++++++++.|.++|.++........+
T Consensus 216 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 216 VLQKLLTSTDSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccc
Confidence 999999999999999999999999887766544
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-28 Score=227.75 Aligned_cols=310 Identities=19% Similarity=0.264 Sum_probs=259.7
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-hHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCc
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~ 103 (363)
..+.++.+++.|.+++++++..|++.|.++.... ......+++.|++|.|+.+|.++ ++.++..|+|+|++++.+++.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4478999999999999999999999999997542 34556788899999999999987 899999999999999988777
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
.+..+...|++|.|+.+|.+++ ..++..++|+|.+++.+.+.........++++.++.++.+.++.++..++++|++++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 8888888999999999999765 699999999999999875333344455789999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
.+...........++++.|+.++.++++.++..|+++|++++.+.+...+.+++.|+++.|+.++.++++.++..|+++|
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 77632334456679999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHH-HHHHHHHHHH---------------Hhcc-cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 264 SNITAGNSRQIDHVIQ-EGLDNLLEIA---------------LQVG-ELNQMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 264 ~nl~~~~~~~~~~~~~-~~l~~ll~~~---------------~~~~-~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
+|++.+++...+.+++ .++..++... ..+. ........+.+.|+++.|..++.++++++++.|
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 9999988877777666 3333333321 1121 123344556688999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10729 327 YKIISMAFND 336 (363)
Q Consensus 327 ~~~l~~~~~~ 336 (363)
.++|.++...
T Consensus 404 ~~aL~~l~~~ 413 (530)
T 1wa5_B 404 CWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=231.34 Aligned_cols=309 Identities=17% Similarity=0.204 Sum_probs=265.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|+++... . .+...+.+.|+++.|+++|.+++++++..|+++|.+++..++..+..+.+.|++|.|++++++
T Consensus 77 ~~~a~~~L~~ls~~-~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 77 ARCTAGTLHNLSHH-R-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHHHHHHHHHTTS-H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcC-c-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence 57788999996444 3 367889999999999999999999999999999999998777788888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++++++..++.+|.+++..++..+..+...|+++.++.++++.++......++.+|.+++.+++ ........++++.++
T Consensus 155 ~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALG 233 (529)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc-cHHHHHHCCCHHHHH
Confidence 9999999999999999988888888999999999999999977767788889999999997652 233445578999999
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
.++.++++.++..+++++.+++...+... ...|++|.+++++.+++++++..|+++|++++.+++...+.+.+.|++
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 310 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Confidence 99999999999999999999997765321 123779999999999999999999999999999888888899999999
Q ss_pred HHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCc
Q psy10729 242 QKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHEN 319 (363)
Q Consensus 242 ~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 319 (363)
+.|+.++.+. +++++..|+++|+|++..+++. ...+..+.+.|+++.|..++.+++
T Consensus 311 ~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~----------------------~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------------------EMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------------------HHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH----------------------HHHHHHHHHcCChhHHHHHhcccc
Confidence 9999999753 4799999999999998764321 123467889999999999988876
Q ss_pred -HHHHHHHHHHHHhhcCCCc
Q psy10729 320 -ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 320 -~~v~~~a~~~l~~~~~~~~ 338 (363)
+++++.|.+++.++..+++
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGG
T ss_pred chHHHHHHHHHHHHHhcChh
Confidence 6999999999999987543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=231.08 Aligned_cols=328 Identities=15% Similarity=0.201 Sum_probs=259.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|+.|+.+|+++.... .+...+.+.|+++.|+++|.++++.++..|+++|.+++...+..+..+.+.|+++.|+.++++
T Consensus 210 r~~Aa~aL~~Ls~~~--~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~ 287 (780)
T 2z6g_A 210 ARCTSGTLHNLSHHR--EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287 (780)
T ss_dssp HHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence 678899999954443 346788899999999999999999999999999999998777888888899999999999998
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchh------------------------------------------HHHhhcCChHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARAR------------------------------------------DLLLGLGTMPQILA 119 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~------------------------------------------~~~~~~g~i~~L~~ 119 (363)
++.+++..++.+|.+++..+++.+ ..+...|+++.|+.
T Consensus 288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~ 367 (780)
T 2z6g_A 288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence 888888887777777775443333 34445566666666
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
++.+.+ ..++..++|+|.+|+....... ...++++.|+.++++.++.++..++++|++++..++.....+++.|++
T Consensus 368 lL~~~~-~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i 443 (780)
T 2z6g_A 368 HLTDPS-QRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443 (780)
T ss_dssp GTTCSC-HHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHH
T ss_pred HHcCCc-hHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 666554 4788889999999998763321 235789999999999999999999999999999888778888999999
Q ss_pred HHHHHhhcCC-C-hhhHHHHHHHHHHhhcCChh---HHHHHHHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCCHHH
Q psy10729 200 PRLVELLDSE-E-TTILTAALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 200 ~~l~~lL~~~-~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+.|+++|.+. + +.++..|+++|+|++..+++ ....+.+.|+++.|+.++.+++ +.+++.|+|+|+|++.++..+
T Consensus 444 ~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 523 (780)
T 2z6g_A 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999763 3 38999999999999875543 2457788999999999999876 499999999999999865443
Q ss_pred HHHHHH-HHHHHHHHHHH-------------------------------------hcccchHHHHHHHHcCcHHHHHHHh
Q psy10729 274 IDHVIQ-EGLDNLLEIAL-------------------------------------QVGELNQMALLVEESGGLEKLEALQ 315 (363)
Q Consensus 274 ~~~~~~-~~l~~ll~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~L~~l~ 315 (363)
..+++ .++..|+.... .+......+..+.+.|+++.|..++
T Consensus 524 -~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL 602 (780)
T 2z6g_A 524 -APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL 602 (780)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGG
T ss_pred -HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHH
Confidence 45554 22333332221 1112233445688999999999999
Q ss_pred cCCcHHHHHHHHHHHHhhcCC
Q psy10729 316 HHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 316 ~~~~~~v~~~a~~~l~~~~~~ 336 (363)
.++++++++.|..++.++..+
T Consensus 603 ~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 603 YSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999988754
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=205.33 Aligned_cols=240 Identities=35% Similarity=0.559 Sum_probs=216.0
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
..++.+...|++++++++..++++|.++...++..+..+.+.|++|.|+++|.+++ .+++..++|+|.+++.+.+....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 56899999999999999999999998876555667778889999999999999877 69999999999999986544445
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.....|+++.++.+++++++.++..++++|++++...+.....+.+.|+++.+++++.++++.++..|+++|++++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 55667899999999999999999999999999999888776788999999999999999999999999999999999888
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...+.+.+.|+++.|+.++.++++.++..|+++|.|++..+++. +..+.+.|+++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------------------~~~~~~~g~i~ 225 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------------------------KQAVKEAGALE 225 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH-------------------------HHHHHHTTHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH-------------------------HHHHHHCCcHH
Confidence 88888999999999999999999999999999999999877654 35778899999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 310 KLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
.|..++.++++++++.|.++|.++..
T Consensus 226 ~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 226 KLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=230.50 Aligned_cols=309 Identities=17% Similarity=0.203 Sum_probs=264.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|+.+... . .....+.+.|+++.|+++|.++++.++..|+++|.+++...+..+..+.+.|++|.|++++++
T Consensus 74 ~~~A~~~L~~Ls~~-~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~ 151 (644)
T 2z6h_A 74 ARCTAGTLHNLSHH-R-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151 (644)
T ss_dssp HHHHHHHHHHHTTS-H-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcC-h-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence 56788888875443 3 367888999999999999999999999999999999997777788888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++++++..++.+|.+++..+++.+..+...|+++.|+++++..+...++..++.+|.+++... .........++++.++
T Consensus 152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALG 230 (644)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHH
Confidence 999999999999999998778888899999999999999997776788899999999999765 3334455678999999
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
.++.++++.++..++++|.+++...+.. . ...++++.|++++.++++.++..|+++|++++.+++..++.+.+.|++
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v 307 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 9999999999999999999999765432 1 123679999999999999999999999999999888888899999999
Q ss_pred HHHHHhhcCC-h-HhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCc
Q psy10729 242 QKMKKLLSSS-R-VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHEN 319 (363)
Q Consensus 242 ~~L~~~l~~~-~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 319 (363)
+.|+.++.+. + +.++..|+++|.|++..+++. ...+..+.+.|+++.|.+++.+++
T Consensus 308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~----------------------~~~q~~v~~~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------------------EMAQNAVRLHYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------------------HHHHHHHHHTTHHHHHHHTTSTTC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH----------------------HHHHHHHHHccChHHHHHHhCccC
Confidence 9999999863 3 799999999999999753321 112356788999999999988875
Q ss_pred -HHHHHHHHHHHHhhcCCCc
Q psy10729 320 -ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 320 -~~v~~~a~~~l~~~~~~~~ 338 (363)
+++++.|.+++.++..+++
T Consensus 366 ~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSGG
T ss_pred chHHHHHHHHHHHHHccCHH
Confidence 7999999999999987654
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=200.32 Aligned_cols=236 Identities=14% Similarity=0.228 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH-hcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhh
Q psy10729 43 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 121 (363)
+-+..|+..|..++. +.+....+.+.|++|.++. +|+++++.++..|+|+|++++.+++.+++.+.+.|++|+|+.+|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 467889999999994 5678888899999999999 99999999999999999999999999998898889999988888
Q ss_pred CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 122 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
.++.+..+++.++|+|++++. +++...+.+.+.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~------------------------------------------~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVR------------------------------------------EQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHT------------------------------------------TCHHHHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHc------------------------------------------CCcHHHHHHHHCCCHHH
Confidence 743334555555555555554 34444456777899999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 281 (363)
|+.+|+++++.++..|+|+|++++.++++.++.+++.|+++.|+.+|.+++++++..|+++|.|++...+.....+
T Consensus 172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~---- 247 (296)
T 1xqr_A 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC---- 247 (296)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH----
Confidence 9999999999999999999999999888899999999999999999999999999999999999998865432100
Q ss_pred HHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCccC
Q psy10729 282 LDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 282 l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
.. ....+...+.+. +..++.++ +.++++.|..++++||.+++++
T Consensus 248 --------~~--~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~f~~~~~~ 292 (296)
T 1xqr_A 248 --------RE--PELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTCFSSPADD 292 (296)
T ss_dssp --------HC--GGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHCC-----
T ss_pred --------hc--cHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 00 112344555553 55666555 7999999999999999876544
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=221.49 Aligned_cols=330 Identities=16% Similarity=0.178 Sum_probs=243.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh-------------------
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ------------------- 62 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~------------------- 62 (363)
|..|+.+|.++..... .....+.+.|+++.|+++|.+++..++..++.+|.+++..+++.
T Consensus 251 ~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 251 LFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp HHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 6788899999766643 44566778899999999998888888887777777777544333
Q ss_pred -----------------------HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH
Q psy10729 63 -----------------------TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119 (363)
Q Consensus 63 -----------------------~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 119 (363)
+..+++.|+++.|+.++.+.+..++..++|+|.+++...+.. ....++++.|+.
T Consensus 330 ~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 330 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQ 406 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHH
Confidence 344556677777777777777788889999999998765431 123568999999
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CC-hhhHHHHHHHHHHhccCChh---hHHHHH
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TD-VETLSDICWALSYISDGHND---KIQAVV 194 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~-~~v~~~al~~L~~l~~~~~~---~~~~~~ 194 (363)
++.+.+ .+++..++|+|++|+.............++++.|+.++.+ .+ +.++..++++|++++...+. ....+.
T Consensus 407 lL~~~d-~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~ 485 (780)
T 2z6g_A 407 LLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485 (780)
T ss_dssp HTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred HHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 998776 5899999999999998753333334456889999999986 33 48999999999999975543 234677
Q ss_pred hcCChHHHHHhhcCCCh-hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHH---------------
Q psy10729 195 DTGVVPRLVELLDSEET-TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE--------------- 258 (363)
Q Consensus 195 ~~g~l~~l~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~--------------- 258 (363)
+.|+++.|+++|.+++. .++..|+|+|+|++.++.. ...+.+.|+++.|+.++.+++++++++
T Consensus 486 ~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~ 564 (780)
T 2z6g_A 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 564 (780)
T ss_dssp HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCC
T ss_pred HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccC
Confidence 88999999999998875 8999999999999985444 478889999999999998766555544
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHH-HHHHHHHH---------------HHHhcccchHHHHHHHHcCcHHHHHHHh
Q psy10729 259 -------AAWTISNITAGNSRQIDHVIQ-EGLDNLLE---------------IALQVGELNQMALLVEESGGLEKLEALQ 315 (363)
Q Consensus 259 -------a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~---------------~~~~~~~~~~~~~~l~~~~~~~~L~~l~ 315 (363)
++.+|.+++.. +.....+.+ .++..|+. ....+......+..+.+.|+++.|..++
T Consensus 565 ~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 565 MEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 55555555532 233233333 11222211 1122233456788899999999999999
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 316 HHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 316 ~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
++++++|++.|.++|.++..+.+
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999988888877776554
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=186.14 Aligned_cols=201 Identities=30% Similarity=0.487 Sum_probs=182.5
Q ss_pred HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 25 ~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
...|..+.|+.+|.+++++++..|+++|.+++..++..+..+.+.|++|.++.+|+++++.++..++++|+|++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 45688999999999999999999999999999888999999999999999999999999999999999999999888888
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
+..+.+.|++|.|+.+|.+++ ..++..++|+|.+++.+.+.........++++.++.+++++++.++..++++|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 889999999999999999887 6999999999999998654333444567899999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.++.....+.+.|+++.+++++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878788888999999999999999999999999999999975
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=186.47 Aligned_cols=200 Identities=32% Similarity=0.523 Sum_probs=182.4
Q ss_pred hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 68 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
..+..+.|..+++++++.++..++++|++++..++..+..+.+.|++|.|+++|.+++ .+++..++|+|.+++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHH
Confidence 4588999999999999999999999999999888888889999999999999999876 599999999999999765444
Q ss_pred CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 148 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 148 ~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.......+++|.++.+|+++++.++..++++|++++..++.....+++.|+++.|++++.++++.++..|+++|+|++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44556678999999999999999999999999999988888878889999999999999999999999999999999998
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++...+.+.+.|+++.|+.++.++++++++.|+++|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88888899999999999999999999999999999999975
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=198.40 Aligned_cols=308 Identities=14% Similarity=0.124 Sum_probs=235.0
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChH-------------------
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD-DENPNTQFEATWALTNIASGTSE------------------- 61 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~-g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~------------------- 61 (363)
..|+..|..+ +... ...+.+++. |.++.|++++. .++..+.+.++.+|.|++...+.
T Consensus 352 ~~AvEgLaYL-Sl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~ 429 (778)
T 3opb_A 352 EMSVEALAYL-SLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXX 429 (778)
T ss_dssp HHHHHHHHHH-TTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------
T ss_pred HHHHHHHHHH-hCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccC
Confidence 4455556553 3322 334555554 66999999997 47889999999999999974331
Q ss_pred -------------------hHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC
Q psy10729 62 -------------------QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 62 -------------------~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 122 (363)
.+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +..|..+.+.|+++.|+.++.
T Consensus 430 p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~ 508 (778)
T 3opb_A 430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLA 508 (778)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTT
T ss_pred cccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHh
Confidence 345778899999999999999999999999999999976 788999999999999999998
Q ss_pred CCCcH--hHHHHHHHHHHHhhcCCCCCCCHH--HHHhHHHHHHHhhcc-CChh------------h-HHHHHHHHHHhcc
Q psy10729 123 PNTPT--TFLRNIVWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHT-TDVE------------T-LSDICWALSYISD 184 (363)
Q Consensus 123 ~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~--~~~~~i~~l~~ll~~-~~~~------------v-~~~al~~L~~l~~ 184 (363)
+.... ..+..|+++|.+++...++...+. ...+.+|.|+.+|.. +... + +..|+.+|.|++.
T Consensus 509 s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs 588 (778)
T 3opb_A 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS 588 (778)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc
Confidence 76532 388999999999997654321000 013889999999983 2211 2 6799999999998
Q ss_pred CCh----hhHHHHHhc-CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc------CchHHHHHhhcCChH
Q psy10729 185 GHN----DKIQAVVDT-GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA------GGLQKMKKLLSSSRV 253 (363)
Q Consensus 185 ~~~----~~~~~~~~~-g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~------~~l~~L~~~l~~~~~ 253 (363)
.++ +....+++. |+++.+..++.+++..++..|+++++||+.+.....+.+.+. +.++.|+.++..++.
T Consensus 589 ~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~ 668 (778)
T 3opb_A 589 SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668 (778)
T ss_dssp CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCH
T ss_pred CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCH
Confidence 873 234656775 899999999999999999999999999998443321334322 247899999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC--CcHHHHHHHHHHHH
Q psy10729 254 NIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH--ENETVYQKCYKIIS 331 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~~a~~~l~ 331 (363)
++++.|+|+|+|++...+...+ ..+...+|++.+.+++.. ++++++.++..++.
T Consensus 669 ~~r~AAagALAnLts~~~~ia~------------------------~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 669 ESQRAVAAIFANIATTIPLIAK------------------------ELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHH------------------------HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHH------------------------HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999999865554322 333334788888888777 88999999999999
Q ss_pred hhcCCC
Q psy10729 332 MAFNDS 337 (363)
Q Consensus 332 ~~~~~~ 337 (363)
+.++.-
T Consensus 725 NL~~~~ 730 (778)
T 3opb_A 725 GLFEVI 730 (778)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 888743
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=177.26 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=163.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-hcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVE-LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+..|+..|..+....+ ..+.+...|++|+|+. +|.+++++++..|+|+|++++.+++..+..+++.|++|.|+.+|+
T Consensus 57 k~~Al~~L~~lv~~~d--na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 57 REGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh--hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3457778888766543 4577889999999999 999999999999999999999989999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 81 S-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 81 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+ ++..+++.|+|+|+|++.+++...+.+...|++|.|+.+|.+++ ..++..++|+|++++.+.+.........|+++.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 5 57899999999999999988877778888999999999999876 699999999999999875445566677899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
|+.+|.++++.++..++++|++++...+..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 999999999999999999999999885543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=168.28 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=169.0
Q ss_pred CHHHHHHhcCCCCh--hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 29 VVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 29 ~l~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+|.++++|.++++ +++..|+++|.+++..+++.+..+.+.|+||.|+++|+++++++++.|+|+|.||+.++++.+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999988887 8999999999999988899999999999999999999999999999999999999988888999
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc----------------cCChh
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------------TTDVE 170 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----------------~~~~~ 170 (363)
.+.+.|++|+|+++|.+..+.+++++++.+|++|+.....+. ....+.+|.|+.++. ..+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~--~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN--LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH--HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH--HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999854336899999999999998754332 233467888887653 13678
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcCC------ChhhHHHHHHHHHHhhcC
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSE------ETTILTAALRTVGNIATG 227 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~~------~~~v~~~a~~~L~nl~~~ 227 (363)
++..+..+|.|++..+++..+.+.+. |+++.|+.+++.. +.+.++.++.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998876677888876 6789999999752 457899999999999864
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=158.64 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=166.7
Q ss_pred CChHHHHHhcCCCCH--HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 70 NAIPKFLQLLSSPHL--NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
-.+|.++++|.++++ .++..+++++.+++..++..+..+.+.|+||+|+++|.+++ .+++..++|+|.+|+.+.+..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 458999999998877 89999999999999877888899999999999999999876 699999999999999865444
Q ss_pred CCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc----------------CCC
Q psy10729 148 PDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD----------------SEE 210 (363)
Q Consensus 148 ~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~----------------~~~ 210 (363)
...+...|.+|.|+.+|. +++.++++.++.+|++++..+..+ ..+.+ +++|.|+.++. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 556677899999999998 478999999999999999766554 45555 45899988763 125
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHc-CchHHHHHhhcCC------hHhHHHHHHHHHHHHhcC
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQA-GGLQKMKKLLSSS------RVNIVKEAAWTISNITAG 269 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~~l~~~------~~~v~~~a~~~L~nl~~~ 269 (363)
+.++..|..+|.||+..+++.++.+.+. |+++.|+.+++.. +.+.++.|+.+|.|++..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 5899999999999998887888888886 6789999999652 567899999999999864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-21 Score=179.97 Aligned_cols=245 Identities=12% Similarity=0.108 Sum_probs=199.1
Q ss_pred HHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHH---HHHHHHHHHHHh
Q psy10729 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN---LAEQATWALGNI 97 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~---v~~~a~~~L~nl 97 (363)
...+.+.|++|.|+.++.++++.++..|+++|.+++ .+++.|..+++.|+++.|+.++.+.... .+..|+++|.++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999 5699999999999999999999877544 899999999999
Q ss_pred hCC-CCchhHHHh---hcCChHHHHHhhCC-CCcH------------hHHHHHHHHHHHhhcCCCC----CCCHHHH-Hh
Q psy10729 98 AGD-GARARDLLL---GLGTMPQILALVQP-NTPT------------TFLRNIVWAISNLCRNKNP----APDFEKI-KI 155 (363)
Q Consensus 98 ~~~-~~~~~~~~~---~~g~i~~L~~ll~~-~~~~------------~~~~~~~~~L~~l~~~~~~----~~~~~~~-~~ 155 (363)
... +|.. .+- ..|++|+|+++|.. +... --...++.+|.||+..+++ ....... .+
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 843 3322 221 14899999999983 2210 1267899999999998632 1222334 47
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC------ChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG------VVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g------~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
++|.+..++.+++..+++.|+++++|++..+......+.+.+ .++.|+.++.+++.++|..|+|+|+|++..++
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999976653212233222 37789999999999999999999999987788
Q ss_pred hHHHHHHHc-CchHHHHHhhcC--ChHhHHHHHHHHHHHHhc
Q psy10729 230 HQTDCVIQA-GGLQKMKKLLSS--SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 230 ~~~~~l~~~-~~l~~L~~~l~~--~~~~v~~~a~~~L~nl~~ 268 (363)
..++.+++. ++++.++.++++ ++++++..++.++.|++.
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 888888887 799999999988 899999999999999996
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=140.72 Aligned_cols=315 Identities=14% Similarity=0.123 Sum_probs=232.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChH-----------------h
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSE-----------------Q 62 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~-----------------~ 62 (363)
++.|+..|+.+... . +.-+..++++.|+..| +.+|.++...++.+|.++...++. .
T Consensus 39 RR~Av~~Lk~~sk~--y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 39 RRNAVRALKSLSKK--Y---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp HHHHHHHHHHTTTT--T---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred HHHHHHHHHHHHHH--h---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 57788888886322 2 3456778899999999 447889999999999887654332 2
Q ss_pred HHHH-HhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-hhHHHhhc-CChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 63 TMTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-ARDLLLGL-GTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 63 ~~~i-~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
.+.+ -+.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+.+|.+.. +.++..++..|..
T Consensus 114 ~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~ 192 (651)
T 3grl_A 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQA 192 (651)
T ss_dssp HHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHH
Confidence 2233 3568899999999999999999999999999977776 67777744 99999999999776 6889999999999
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCCh----hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChh---
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT--- 212 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~----~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~--- 212 (363)
|+.++......+...++++.+..++..+.. .+...++.++.++..+++.+...+.+.|+++.|.+++..+.+.
T Consensus 193 Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W 272 (651)
T 3grl_A 193 LTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGW 272 (651)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCC
T ss_pred HhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccccc
Confidence 999875444555567999999999987543 6889999999999999988888899999999999999754321
Q ss_pred ---hHH---HHHHHHHHhhcC------ChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10729 213 ---ILT---AALRTVGNIATG------NDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVI 278 (363)
Q Consensus 213 ---v~~---~a~~~L~nl~~~------~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~ 278 (363)
... .++.++.-++.. ...+.+.+.+.|+++.|+.++-.. ...++..|..+++.+..+++..-..+.
T Consensus 273 ~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa 352 (651)
T 3grl_A 273 SAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFA 352 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHh
Confidence 222 356666666664 234567888999999999998765 678999999999999998866532221
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 279 QEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 279 ~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
+. .+....+ +.-.+..|..+. +....++|-.|..+++.|+.+++
T Consensus 353 ~~----------~vp~~~~------~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 353 SV----------NAPSNPP------RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HC----------EESSSSC------EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred hc----------cCCCCCC------cChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 10 0000000 000122222233 44568888888888888887765
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-15 Score=135.46 Aligned_cols=276 Identities=11% Similarity=0.200 Sum_probs=212.9
Q ss_pred HHHHHHHHhhcCCCCC----------------cHHHHHH-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChH-hHHH
Q psy10729 4 IATRSARKMLSKERHP----------------PIDELIE-AGVVPICVELLDDENPNTQFEATWALTNIASGTSE-QTMT 65 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~----------------~~~~~~~-~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~ 65 (363)
.++.+|..+++.++++ +.+.+++ .+.++.|+.+|++++-.+|..++.+|..++...+. ..+.
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~ 160 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQI 160 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3567777777655432 2234443 58899999999999999999999999999987776 6677
Q ss_pred HHh-CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC---cHhHHHHHHHHHHHhh
Q psy10729 66 VIN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLC 141 (363)
Q Consensus 66 i~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~ 141 (363)
+.. .++++.|+.+|+++.+.+|..++..|.+++.++++.++.+.-+|+++.|++++.... ...+...++.++.+|.
T Consensus 161 Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL 240 (651)
T 3grl_A 161 ILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL 240 (651)
T ss_dssp HHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 774 599999999999999999999999999999999999988888899999999998332 3478899999999999
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChh------hHHH---HHHHHHHhccCC------hhhHHHHHhcCChHHHHHhh
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVE------TLSD---ICWALSYISDGH------NDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~------v~~~---al~~L~~l~~~~------~~~~~~~~~~g~l~~l~~lL 206 (363)
+.+..........+++|.|..+++.+++. ...+ ++.++.-+.... ..+...+.+.|+++.+++++
T Consensus 241 r~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll 320 (651)
T 3grl_A 241 KNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320 (651)
T ss_dssp TTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence 98644456667788999999998764321 2223 566666666542 23456788999999999999
Q ss_pred cCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcC---------chHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 207 DSE--ETTILTAALRTVGNIATGNDHQTDCVIQAG---------GLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 207 ~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---------~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
..+ ...++..|+.+++.++++++.....+.+.. ++..|+.++.+. ..++|..|+.++..+..++++..
T Consensus 321 ~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q 400 (651)
T 3grl_A 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ 400 (651)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 766 457999999999999999998887777543 333344445443 57889999999999998876544
Q ss_pred HHHHH
Q psy10729 275 DHVIQ 279 (363)
Q Consensus 275 ~~~~~ 279 (363)
..++.
T Consensus 401 ~~i~~ 405 (651)
T 3grl_A 401 GEIVS 405 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-14 Score=122.95 Aligned_cols=256 Identities=12% Similarity=0.103 Sum_probs=185.2
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
..+.+.++.|++.|.++++.++..|+++|+++.. + ..++.+..+++++++.++..++++|+.+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 4456899999999999999999999999999972 2 4588899999999999999999999999743222
Q ss_pred hhHHHhhcCChHHHHHh-hCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 104 ARDLLLGLGTMPQILAL-VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~l-l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
.. ..++.+... +.+++ ..++..++++|..+..... ......++.+..+++++++.++..++++|+++
T Consensus 88 ~~------~l~~~L~~~~~~d~~-~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKS-ACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HH------HHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ch------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 11 123444432 34444 6899999999999975431 12346789999999999999999999999988
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~ 262 (363)
.. .+.++.|++++.++++.+|..|+++|+.+....+ .+++.|...++++++.++..|+++
T Consensus 156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 53 2468999999999999999999999999853332 356788899999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH---cCcHHHHHHHh-cCCcHHHHHHHHHHHHh
Q psy10729 263 ISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEE---SGGLEKLEALQ-HHENETVYQKCYKIISM 332 (363)
Q Consensus 263 L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~---~~~~~~L~~l~-~~~~~~v~~~a~~~l~~ 332 (363)
|+++.. +..+ ..++.......-.......+.+ ...++.|..++ +++++++...+...+.+
T Consensus 216 L~~~~~--~~~~--------~~L~~~l~d~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 216 LSYRKD--KRVL--------SVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHTTC--GGGH--------HHHHHHHTSSSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHhCC--HhhH--------HHHHHHhcCccHHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 999863 2222 2222222211111122223333 34567777765 45677788777776653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-13 Score=112.71 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=158.1
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+.++.|++.|.++++.++..|++.|+.+.. ...++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999999873 2678999999999999999999999999852
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.+.++.|+.++.+++ ..++..++++|..+.. ...++.+..++.++++.++..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 245788899998777 5899999999998853 3567889999999999999999999999852
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
...++.|.+++.++++.++..|+++|+.+.. ...++.|..+++++++.++..|..+|.++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1347889999999999999999999999842 23567788889999999999999999998
Q ss_pred hcCC
Q psy10729 267 TAGN 270 (363)
Q Consensus 267 ~~~~ 270 (363)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-13 Score=109.37 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=157.6
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+..+.++++|.++++.++..|++.|+.+.. ...++.|+.++.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567889999999999999999999998873 2568999999999999999999999999852
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
...++.|...+.+++ ..++..++++|..+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 245788899998776 5899999999998753 2478889999999999999999999999853
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
...++.|..++.++++.+|..|+++|+.+.. + ..++.|..+++++++.++..|..+|.++
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2457889999999999999999999999832 2 3567788888899999999999999886
Q ss_pred h
Q psy10729 267 T 267 (363)
Q Consensus 267 ~ 267 (363)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=130.85 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=190.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.+++.+++.+.++++.+|..|+++|.++....+......+ ..+++.+..++.++++.++..++++|..++...+..-..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4677788888889999999999999998865432211111 156788888899999999999999999999765543222
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH--HHHHhHHHHHHHhhc-----------c--------
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIH-----------T-------- 166 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~ll~-----------~-------- 166 (363)
.. .++++.++.++.+.+ ..++..+++++..++.... .... .....++|.+...+. +
T Consensus 253 ~l-~~l~~~l~~~~~~~~-~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 253 HM-HNIVEYMLQRTQDQD-ENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 22 357888888888765 5899999999999987531 0000 012356777777762 2
Q ss_pred ---CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHH
Q psy10729 167 ---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243 (363)
Q Consensus 167 ---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 243 (363)
.+..++..+..++..++...++.. + ..+++.+.+++.++++.+|..|++++++++.+......... .++++.
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~~~---~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~ 404 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRDEL---L-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPH 404 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHH
Confidence 123478889999999985543321 1 13578888888889999999999999999987765443333 367899
Q ss_pred HHHhhcCChHhHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy10729 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQ-IDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETV 322 (363)
Q Consensus 244 L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v 322 (363)
++..++++++.|+..|+|++++++...... ....+ .+.++.|...+.++++.|
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--------------------------~~ll~~L~~~L~d~~~~v 458 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--------------------------KPLMTELLKRILDSNKRV 458 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--------------------------HHHHHHHHHHHTCSSHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--------------------------HHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999998531110 00000 123444555555667777
Q ss_pred HHHHHHHHHhhcC
Q psy10729 323 YQKCYKIISMAFN 335 (363)
Q Consensus 323 ~~~a~~~l~~~~~ 335 (363)
+..|.+++.++.+
T Consensus 459 r~~a~~aL~~l~~ 471 (852)
T 4fdd_A 459 QEAACSAFATLEE 471 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=140.83 Aligned_cols=257 Identities=15% Similarity=0.157 Sum_probs=184.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHH--cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|..|+.++..+..... +.+.. .+.++.+.+++.+++++++..|+++|..++...+......++ ++++.++..+
T Consensus 191 R~~A~~aL~~~~~~~~----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~ 265 (852)
T 4fdd_A 191 RSHAVACVNQFIISRT----QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT 265 (852)
T ss_dssp HHHHHHHHHTTTTTTC----HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc
Confidence 5667777777665432 11111 246778888888899999999999999999765543222222 5788888999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhC-----------C--C--------CcHhHHHHHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQ-----------P--N--------TPTTFLRNIVWA 136 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~-----------~--~--------~~~~~~~~~~~~ 136 (363)
++.++.++..+++++..++... ..+..+. ....+|.++..+. + . ..-.++..+..+
T Consensus 266 ~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~ 344 (852)
T 4fdd_A 266 QDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHH
Confidence 9999999999999999998653 3333221 1245666766662 2 0 112467788888
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
|..++...+. .....+++.+..+++++++.++..++++++.++.+......... .++++.+++.+.++++.+|..
T Consensus 345 L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~ 419 (852)
T 4fdd_A 345 LDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSI 419 (852)
T ss_dssp HHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHH
Confidence 8888865421 23456788899999999999999999999999988765433222 356899999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
|++++++++...........-.++++.|+..+.++++.++..|+++|.+++..
T Consensus 420 a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999863221100011125778888888888999999999999999864
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-13 Score=127.42 Aligned_cols=288 Identities=11% Similarity=0.058 Sum_probs=205.9
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+.+|..+...-.........-..++|.+.++++++++.+|..++++|+.++..-.. ......++|.+..+++++
T Consensus 299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCC
Confidence 34555555554433221111122346778888888999999999999999998742111 112235789999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 162 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 162 (363)
+++++..++.+++.++..... .......+|.+..++.+.+ ..++..++.++..++..-... .....++|.+..
T Consensus 376 ~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ 448 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMA 448 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHH
Confidence 999999999999988743221 1122456788888887655 588999999999887642211 112357889999
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchH
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 242 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 242 (363)
.+.+++..++..++.+++.++...... .....++|.+..++.++++.+|..++++++.++..... ...-..+++
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~ 522 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLP 522 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHH
Confidence 999999999999999999998543321 12245688899988888999999999999999763221 123346889
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETV 322 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v 322 (363)
.|...++++++.+|..++++++.++..-... ......++.|..+..+++++|
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------------------~~~~~~~p~l~~l~~d~d~~v 574 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------------------------TLQSEVKPILEKLTQDQDVDV 574 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------------------------HHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------------------------hhHHHHHHHHHHHcCCCchhH
Confidence 9999999999999999999999998642111 111234556677788999999
Q ss_pred HHHHHHHHHhhc
Q psy10729 323 YQKCYKIISMAF 334 (363)
Q Consensus 323 ~~~a~~~l~~~~ 334 (363)
|..|..++..+-
T Consensus 575 r~~a~~al~~l~ 586 (588)
T 1b3u_A 575 KYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-12 Score=122.82 Aligned_cols=233 Identities=12% Similarity=0.107 Sum_probs=162.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch---
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--- 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--- 104 (363)
.+++.+.+++.++++.+|..|+.++.++...+++.. .+.+.++.+..+|.++++.++..|+++|+.++.+++..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 345668888899999999999999999986655432 22467899999999999999999999999999876532
Q ss_pred ------hHHHhh----------------------------cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC--CCCC
Q psy10729 105 ------RDLLLG----------------------------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--NPAP 148 (363)
Q Consensus 105 ------~~~~~~----------------------------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~ 148 (363)
-..+.. ...++.+..++++.+ ..++..+++++..+.... ++..
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBS
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHH
Confidence 111110 123444555555555 489999999999987532 1111
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
.......+.+.++.++. +++.++..++.+++.+....+.... ..+..+... .+++..+|..|+.++.+++...
T Consensus 277 ~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 277 YNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFFVK-YNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp HHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTSCC-TTSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhheec-cCChHHHHHHHHHHHHHHCChh
Confidence 11123456677776664 8899999999999999865443211 112222222 2344789999999999987532
Q ss_pred hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 278 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 278 (363)
..+. +++.|...+.+.++++++.+++++++++...+.....++
T Consensus 350 --nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v 392 (591)
T 2vgl_B 350 --NIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV 392 (591)
T ss_dssp --THHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 3332 455688888888999999999999999987654444333
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-12 Score=106.04 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=154.9
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 69 ~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
...++.|+..|+++++.++..+++.|+.+.. .+.++.|+.++.+++ ..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 4679999999999999999999999998853 246789999999776 6999999999998853
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
.+.++.+..+++++++.++..++++|+.+.. .+.++.|++++.++++.++..|+++|+.+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 3567889999999999999999999999863 1357889999999999999999999999842
Q ss_pred hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGL 308 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~ 308 (363)
...++.|..+++++++.++..|+++|..+.. ...+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------------------------------~~~~ 176 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------------------------------ERVR 176 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------------------------------HHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------------------hhHH
Confidence 2467889999999999999999999998842 1234
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 309 EKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 309 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
+.|..+++++++.|+..|..+|.++.....
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 557777778899999999999998766543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=118.43 Aligned_cols=227 Identities=16% Similarity=0.125 Sum_probs=164.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.+++.+.++..++++..|..|+.+++.++...+.. ....++|.+..+++++++.+|..++.+++.++...+. .
T Consensus 126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~ 198 (588)
T 1b3u_A 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---D 198 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---H
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---H
Confidence 34555555555566666666666666666443221 1124577888888999999999999999999865332 1
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
......+|.+..++.+++ ..++..++.+|..++...++ ......++|.+..++++++..++..++.+++.++...+
T Consensus 199 ~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 274 (588)
T 1b3u_A 199 NVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274 (588)
T ss_dssp HHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC
Confidence 223567888888888776 58999999999998875421 23445688889999999999999999999999985432
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH-HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
.. .....+++.+..+++++++.+|..|+++++.++...... .....-..+++.+..+++++++.+|..++++|..+
T Consensus 275 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 275 PE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp HH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred cc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 21 123456899999999999999999999999998743221 11122246778888888888889999999888888
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
+.
T Consensus 352 ~~ 353 (588)
T 1b3u_A 352 SP 353 (588)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=105.48 Aligned_cols=226 Identities=10% Similarity=0.006 Sum_probs=162.1
Q ss_pred HHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 66 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 66 i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
..+...++.++..|.++++.++..++++|+++.. .+.++.|..++.+++ ..++..++++|..+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc
Confidence 3456789999999999999999999999999862 235788999998876 5899999999999864321
Q ss_pred CCCCHHHHHhHHHHHH-HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 146 PAPDFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
. ...+++.+. .+++++++.++..++++|+++....+.... .+++.+...+.++++.+|..|+++|+++
T Consensus 87 ---~---~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 87 ---C---EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp ---T---HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ---c---chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 1 223555565 356778999999999999999754332211 3478899999999999999999999987
Q ss_pred hcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHH
Q psy10729 225 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG--ELNQMALLV 302 (363)
Q Consensus 225 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~~~~~l 302 (363)
.. .+.++.|+.++.++++.++..|+++|+++....+.....++. ....-. -.......+
T Consensus 156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~--------~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVE--------MLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHH--------HTTCSCHHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHH--------HhcCCCHHHHHHHHHHH
Confidence 43 258899999999999999999999999986555544332222 111100 001111222
Q ss_pred H---HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 303 E---ESGGLEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 303 ~---~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
. ....++.|..++.+++ |+..|.+++..+-.
T Consensus 217 ~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 217 SYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2 2346677777776654 88888888887643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=100.47 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=152.7
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+..+.++.+|+++++.++..++++|+.+.. .+.++.|+..+.+++ ..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-------
Confidence 567889999999999999999999998853 245788999998766 5899999999988753
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
...++.+..++.++++.++..++++|+.+.. ...++.+++++.++++.+|..|+++|+.+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2568889999999999999999999999853 1357889999999999999999999999842
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...++.|..++.++++.++..|+++|..+.. + ..++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~----------------------------------~~~~ 172 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E----------------------------------RVRA 172 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H----------------------------------HHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h----------------------------------hHHH
Confidence 3577889999999999999999999998831 1 1345
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 310 KLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
.|..++.++++.|+..|..+|.++
T Consensus 173 ~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 173 AMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 566667788899999999999875
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=117.89 Aligned_cols=223 Identities=14% Similarity=0.098 Sum_probs=167.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
-+++.+.+-|.++++.++..|+.+|+++. .++... ..++.+.+++.++++.+|..|++++.+++..+|+.
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~--- 155 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM--- 155 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---
Confidence 35677777788899999999999999887 344333 34678999999999999999999999999776653
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+...+.++.+..+|.+.+ ..++..++++|..++.............+.++.++..+...++..+...+.+++.++..++
T Consensus 156 ~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~ 234 (591)
T 2vgl_B 156 VEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD 234 (591)
T ss_dssp HHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH
T ss_pred cccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh
Confidence 223467899999998766 5999999999999998753221222334567777777778889999999999999886554
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
.... .+++.+..++++.++.|+..|++++..+.. .+++..+.+. .++.+.|+.++. +++.++..|..+|.
T Consensus 235 ~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 235 REAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp HHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 3322 347888889999999999999999999874 2344444333 245666776654 67788888888888
Q ss_pred HHhc
Q psy10729 265 NITA 268 (363)
Q Consensus 265 nl~~ 268 (363)
.++.
T Consensus 308 ~i~~ 311 (591)
T 2vgl_B 308 LIVQ 311 (591)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=113.40 Aligned_cols=260 Identities=15% Similarity=0.168 Sum_probs=175.0
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCCChHhHH-HHHhCCChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE--NPNTQFEATWALTNIASGTSEQTM-TVINANAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~~~~~~-~i~~~~~i~~l~~ll 79 (363)
..|+.+|..+...-......... ..+++.++..+.++ ++.+|..|+++++++...-..... .....-+++.+...+
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 34566666655432111111111 24678888888666 789999999999997643221110 001111466777778
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC---------------
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--------------- 144 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--------------- 144 (363)
.+++++++..++++|..++...+..-......++++.++..+.+.+ ..++..+++.+..++...
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 8889999999999999998554432111111166777777776655 589999999888887642
Q ss_pred ---CCCCCHH--HHHhHHHHHHHhhcc-------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChh
Q psy10729 145 ---NPAPDFE--KIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212 (363)
Q Consensus 145 ---~~~~~~~--~~~~~i~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~ 212 (363)
....... ....++|.+...+.. ++..++..++.++..++...+.. ++ ..+++.+...+.++++.
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCChH
Confidence 1112222 235677888777754 23578999999999998554422 11 24578888888999999
Q ss_pred hHHHHHHHHHHhhcCCh-hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 213 ILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+|..|+.+++.++.+.. ...+..+ ..+++.++..+.++++.+|..|+|+|++++..
T Consensus 382 ~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998643 2211122 46899999999999999999999999999864
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-10 Score=108.87 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=171.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
+..|+.++.++..... +. + .+.++.+.++|.++++.++..|+.+|..++..+++....+. ..+|.++.+|.+
T Consensus 159 Rk~A~~al~~l~~~~p-~~----v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~ 230 (618)
T 1w63_A 159 RKKAALCAVHVIRKVP-EL----M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKN 230 (618)
T ss_dssp HHHHHHHHHHHHHHCG-GG----G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCh-HH----H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHH
Confidence 4567777777655332 11 1 26777788888889999999999999999976554333333 678888877652
Q ss_pred ---------------CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC-----CCcHhHHHHHHHHHHHhh
Q psy10729 82 ---------------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-----NTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 82 ---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~l~ 141 (363)
+++-.+..++.+|+.++..+|... ...++.|..++.. ..+..+...+++++..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~ 305 (618)
T 1w63_A 231 LIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK 305 (618)
T ss_dssp HHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC
T ss_pred HHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC
Confidence 467788889999999997765432 3345666666532 123478888888888764
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
.. ......+++.+..++.+.++.++..++.+++.+....+.. + ....+.++.++.+++..+|..|+.+|
T Consensus 306 ~~------~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 306 SE------SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp CC------HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCCChhHHHHHHHHH
Confidence 32 1223457788888999999999999999999998654432 2 23477889999999999999999999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..++.... .+.+ ++.|...+.+.+++++..++.+|+.++..
T Consensus 375 ~~l~~~~n--v~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 375 FALVNGNN--IRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHCCSSS--THHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHccccc--HHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99986432 2323 45677777788899999999999999975
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-11 Score=113.73 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=160.5
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHH-HHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF-LQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l-~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
....+..++| +++.|++++++.|..|+++|++++. ++..+..+...+++..+ ..+|.+++.+|+..|+++|+||+.+
T Consensus 29 ~~~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 29 AKLREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3344455555 5567899999999999999999995 78889999998988775 5578899999999999999999954
Q ss_pred -CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 101 -GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 101 -~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
.+.....+...|++++|..++... ...+........ ... ......+ ..+...++.+|
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~-~~~-~~~~~~~-----------~~~~~~~l~lL 164 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFS-KLL-KAQQRLV-----------WDITGSLLVLI 164 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGG-GSC-HHHHHHH-----------HHHHHHHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhh---------HHHHhhhccccc-ccc-HHHHHHH-----------HHHHHHHHHHH
Confidence 355667888899999998887532 122222221110 011 1111111 22456677888
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh--cCChHh
Q psy10729 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL--SSSRVN 254 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l--~~~~~~ 254 (363)
++++..++.....+.+.+.++.++.+|.+. ..+++..|+.+|.+++..++...+.+.+.+....+..++ ...+..
T Consensus 165 ~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~ 244 (684)
T 4gmo_A 165 GLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP 244 (684)
T ss_dssp HHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT
T ss_pred HHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH
Confidence 999988887777888889999999998543 357999999999999999999888888876544333222 333445
Q ss_pred HHHHHHHHHHHHh
Q psy10729 255 IVKEAAWTISNIT 267 (363)
Q Consensus 255 v~~~a~~~L~nl~ 267 (363)
.+..+++.|.|+.
T Consensus 245 ~~~la~giL~Ni~ 257 (684)
T 4gmo_A 245 RAVMACGVLHNVF 257 (684)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 6778899999974
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=115.81 Aligned_cols=253 Identities=17% Similarity=0.219 Sum_probs=168.6
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh-HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch-hH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTS-EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RD 106 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~-~~ 106 (363)
+++.+.+.+.++++.++..|+++++.++.... ......++ .+++.++..+.++++.++..++|+++.++...+.. ..
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34555556678889999999999999996642 32222222 57889999999999999999999999998431110 00
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC---CCCHHHHHhHHHHHHHhhccCC--hhhHHHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP---APDFEKIKICLPLLNQLIHTTD--VETLSDICWALSY 181 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~---~~~~~~~~~~i~~l~~ll~~~~--~~v~~~al~~L~~ 181 (363)
.-.-...+|.++..+.+. ..++..++|++.+++....+ ..-......+++.+...+.+.+ +.++..++.+++.
T Consensus 449 ~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 001134578888888764 58999999999999875321 1111234567888888888544 7899999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCC---------------ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSE---------------ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~---------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 246 (363)
+....+......+. .++|.+++.+... ...++..++.+|.+++...+.......+ .+++.+..
T Consensus 527 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~ 604 (861)
T 2bpt_A 527 MVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR 604 (861)
T ss_dssp HHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred HHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence 98655433333232 3566666666421 3457889999999998754432222222 46777888
Q ss_pred hhcCChH-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10729 247 LLSSSRV-NIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286 (363)
Q Consensus 247 ~l~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll 286 (363)
.+++.+. .++..+.++++.++..........+...+..++
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 645 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLL 645 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8887766 899999999999986532333333443333333
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-10 Score=85.74 Aligned_cols=219 Identities=17% Similarity=0.198 Sum_probs=176.2
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCC
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
.++..+++.++++|++.-|.++..|+.++..++..-++....+ +..|+.+++ +...++......+++.++...|
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 3456789999999999999999999999999998777766533 456666765 6667787888999999997766
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
+.. .+.+|.+..-.+-.+ .+++.+..++|..++...+ ....+++.-+..++.++|..-+..++..++.+
T Consensus 103 e~v-----~~vVp~lfanyrigd-~kikIn~~yaLeeIaranP-----~l~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 103 ELV-----KSMIPVLFANYRIGD-EKTKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp HHH-----HHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred HHH-----HhhHHHHHHHHhcCC-ccceecHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 543 455788888888776 5999999999999998752 46678888899999999988888888888888
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~ 262 (363)
..+...+. ...+|.+..+|.+.+.-||.+|..+|.+++..++..++.+ ..-+.-+++.+..+++.....
T Consensus 172 Gen~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 172 GENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp CTTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHH
T ss_pred hccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHH
Confidence 87766543 3558999999999999999999999999999988865433 335667788888888888888
Q ss_pred HHHHhcC
Q psy10729 263 ISNITAG 269 (363)
Q Consensus 263 L~nl~~~ 269 (363)
|+.++.-
T Consensus 241 L~rl~l~ 247 (253)
T 2db0_A 241 ISRLLLL 247 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887653
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=109.74 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=145.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+++.|.+-|.++++.++..|+++|+++.. ++.. ..+++.+.+++.++++.+|..|+.++.++...+|+..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence 56677788889999999999999999983 3332 2567889999999999999999999999997666532
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---------------CChhhHH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---------------TDVETLS 173 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---------------~~~~v~~ 173 (363)
.+.++.+..++.+.+ ..++..++++|..++..... . ......++|.++.+|.. .++..+.
T Consensus 178 --~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~-~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 178 --EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPD-M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp --GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHH-H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred --HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChH-H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 367788888887766 58999999999999875311 0 12334567777766653 4778888
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc------CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLD------SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
.++.+++.++..++.... ...+.+..++. +.+..+...|++++..+.. .+.... .++..|..+
T Consensus 253 ~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~~~L~~~ 321 (618)
T 1w63_A 253 RILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHH
Confidence 889999988876543211 22333333332 1233466666666666532 221111 234555555
Q ss_pred hcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 248 LSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
+.++++.++..|..+|..++...+.
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~ 346 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHN 346 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHH
Confidence 6666666666666666666655443
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.6e-11 Score=117.96 Aligned_cols=261 Identities=16% Similarity=0.148 Sum_probs=180.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.++..+...-............+++.+.+.+.+++++++..++.+|..++...+......+...+++.++..+.+
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (876)
T 1qgr_A 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (876)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566666665543110000001112357777777788889999999999999986655444444445788889988888
Q ss_pred CCHHHHHHHHHHHHHhhCCCC------------------chhHHH--hhcCChHHHHHhhCC------CCcHhHHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGA------------------RARDLL--LGLGTMPQILALVQP------NTPTTFLRNIVW 135 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~------------------~~~~~~--~~~g~i~~L~~ll~~------~~~~~~~~~~~~ 135 (363)
.++.++..++.++.+++.... ...... .-...+|.++..+.. +++..++..+..
T Consensus 271 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~ 350 (876)
T 1qgr_A 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHH
Confidence 889999999999998874310 000000 013456777777752 123468888889
Q ss_pred HHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhH
Q psy10729 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTIL 214 (363)
Q Consensus 136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~ 214 (363)
++..++..... .....+++.+...+.++++.++..++++++.++.+.. ......+ ..+++.++..+.++++.+|
T Consensus 351 ~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr 425 (876)
T 1qgr_A 351 CLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR 425 (876)
T ss_dssp HHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHH
Confidence 99888875421 1245678888888888999999999999999997764 3223322 3478999999999999999
Q ss_pred HHHHHHHHHhhcCChhHH--HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 215 TAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~~--~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..|++++++++...+... .... ..+++.++..+.+. +.++..|+|+|.+++..
T Consensus 426 ~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 426 DTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999987533210 1111 24677788888775 88999999999998853
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=115.20 Aligned_cols=233 Identities=15% Similarity=0.155 Sum_probs=166.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC------
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA------ 102 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~------ 102 (363)
+++.+.+.+.+++++++..++.+|..++...+......+...+++.+...+.+.++.++..++.++..++....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56677777788899999999999999986544322222222667778888888899999999999999875311
Q ss_pred -----------chhHHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc
Q psy10729 103 -----------RARDLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 165 (363)
Q Consensus 103 -----------~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 165 (363)
...... -..++|.++..+... +...++..+..+|..++..... .....+++.+...+.
T Consensus 305 ~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNIT 379 (861)
T ss_dssp HHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTT
T ss_pred hhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcC
Confidence 110111 145678888888642 2236888889999888875321 223567788888888
Q ss_pred cCChhhHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH--HHHHHHcCchH
Q psy10729 166 TTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ--TDCVIQAGGLQ 242 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~~~~~l~ 242 (363)
+.+..++..++++++.++.+.. ......+. .+++.+++.+.++++.+|..++++++.++...... ..... ..+++
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~ 457 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQ 457 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHH
Confidence 8999999999999999997753 33333332 46888999999999999999999999998632110 00111 24577
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.++..+.+. +.++..|+|++.+++..
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 788888776 89999999999999863
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.6e-11 Score=109.10 Aligned_cols=276 Identities=14% Similarity=0.025 Sum_probs=188.6
Q ss_pred CCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCCC-hHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELLDDE--NPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~~ 102 (363)
+.++.|+..+.++ ++.++..|+.+|+.++... +....... ..+++.+..++.++ ++.++..++++++++.....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5778888888777 8999999999999998532 21111111 14678888899887 78999999999999864311
Q ss_pred chh-HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHH-hHHHHHHHhhccCChhhHHHHHHHHH
Q psy10729 103 RAR-DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK-ICLPLLNQLIHTTDVETLSDICWALS 180 (363)
Q Consensus 103 ~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~al~~L~ 180 (363)
... ......-.++.+...+.+.+ .+++..++++|..++........ .... .+++.+...+.+.++.++..++..+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYME-TYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGGCT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 100 00011113555555555555 68999999999999875422111 1123 67888888888899999999999998
Q ss_pred HhccCChh---------------------hHHHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhcCChhHH
Q psy10729 181 YISDGHND---------------------KIQAVVDTGVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 181 ~l~~~~~~---------------------~~~~~~~~g~l~~l~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
.++..... ..+... ..++|.+++.+.. ++..+|..|+.+|..++...++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-- 361 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--
Confidence 88754210 001001 2346666666643 2346899999999999874432
Q ss_pred HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHH
Q psy10729 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKL 311 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L 311 (363)
.+. ..+++.+...+.+.+..+|..|+++++.++.+.. +.. ...+ ...++.+
T Consensus 362 -~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~------------------------~~~l--~~~~~~l 413 (462)
T 1ibr_B 362 -DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL------------------------KPLV--IQAMPTL 413 (462)
T ss_dssp -THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT------------------------CTTT--TTHHHHH
T ss_pred -HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHH------------------------HHHH--HHHHHHH
Confidence 222 2467778888888899999999999999997532 110 0111 3577888
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 312 EALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 312 ~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
..++.++++.||..|.+++.++...-
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999987654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-09 Score=107.79 Aligned_cols=236 Identities=17% Similarity=0.200 Sum_probs=166.8
Q ss_pred CCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCCChHhH-HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDDE--NPNTQFEATWALTNIASGTSEQT-MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.+++.+...+.++ +..++..|+.+|..++..-.... .......+++.+...+.+++++++..++.+|..++...+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4566677777655 68899999999999875322111 00111125777788888888999999999999998654443
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC------------------CCCCCHH--HHHhHHHHHHHhh
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK------------------NPAPDFE--KIKICLPLLNQLI 164 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~------------------~~~~~~~--~~~~~i~~l~~ll 164 (363)
-.......+++.++..+.+.+ ..++..+++++..++... ....... ....++|.+...+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 223333367888888777665 588999988888877531 0111222 2356778787777
Q ss_pred cc-------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hHHHHHH
Q psy10729 165 HT-------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVI 236 (363)
Q Consensus 165 ~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~ 236 (363)
.. ++..++..+..++..++....... + ..+++.+...+.++++.+|..|+++++.++.+.. +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~---~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcHhh---H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 53 346789999999999885443221 1 1346777788888999999999999999998654 3333333
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+++.++..+.++++.++..|+|++++++..
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999864
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.6e-08 Score=73.63 Aligned_cols=187 Identities=16% Similarity=0.219 Sum_probs=154.7
Q ss_pred HhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC
Q psy10729 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 67 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 146 (363)
.+..++..++++|++.-+.++.+|+.++.+++...|+..... +..|+-+++.+....+......+++.++.-.+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence 345678899999999989999999999999998877765444 46677777755546777888899999987652
Q ss_pred CCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 147 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 147 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
....+.+|.+..-..-.|++++.....+|..++..++.... +++..+..++.+++..-+..|+..++.+..
T Consensus 103 ----e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 ----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ----HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ----HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 56678888888888889999999999999999988886433 447788899999998889999999998876
Q ss_pred CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+...+. .-++|.|..++.+++.-|+..|+-+|.+++..++..
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 655554 368999999999999999999999999999998873
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=111.46 Aligned_cols=244 Identities=11% Similarity=0.086 Sum_probs=174.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch---
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--- 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--- 104 (363)
.+++.+++.|.++++.+|..|+.+|+.++...+.. .+ ..+++.++..+.++++.+|..++.+++.++...+..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 56788889898899999999999999998654431 11 245788888888888899999999999998443221
Q ss_pred --hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 105 --RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 105 --~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
...-....++|.|...+.+..+..++..++.++..++........ .....+++.+...+.++++.++..++.+++.+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 011123457899999998533468999999999999864322111 13467888888899999999999999999999
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
+...+.. + -..+++.+++.+.+.+ +.++..++.+++.++...+......+ ..+++.++..+.+.++++|..+..
T Consensus 203 ~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9765532 1 2345788888776543 46888899999998874433221111 368888999999888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q psy10729 262 TISNITAGNSRQIDHVIQEG 281 (363)
Q Consensus 262 ~L~nl~~~~~~~~~~~~~~~ 281 (363)
++..++...++.+...+...
T Consensus 278 ~l~~l~~~~~~~~~~~l~~l 297 (1230)
T 1u6g_C 278 AFESFVRRCPKEVYPHVSTI 297 (1230)
T ss_dssp HHHHHHHCTTCCCHHHHHHH
T ss_pred HHHHHHHHChHHHHHhHHHH
Confidence 99999876433333333333
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=90.42 Aligned_cols=241 Identities=13% Similarity=0.134 Sum_probs=165.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH----
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ---- 77 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~---- 77 (363)
+.+|+.++.++..... +.+...+.++.+.++|.++++.++..|+.++..++..++..-. ..+|.+++
T Consensus 165 RK~A~~al~kl~~~~p----~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ 235 (621)
T 2vgl_A 165 KQSAALCLLRLYRTSP----DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSR 235 (621)
T ss_dssp HHHHHHHHHHHHHHCG----GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh----hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHH
Confidence 5667777777665432 1121248899999999999999999999999999866554211 33444443
Q ss_pred hcCCC-------------CHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhC-CC--------C-cHhHHHHH
Q psy10729 78 LLSSP-------------HLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQ-PN--------T-PTTFLRNI 133 (363)
Q Consensus 78 ll~~~-------------~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~-~~--------~-~~~~~~~~ 133 (363)
++... ++=.+...+..+..++.. ++..+..+.+ .++.++..+. .+ + ...+...+
T Consensus 236 ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 236 IVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp HHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 33221 466777888888888753 3343333321 3333333221 11 1 12677777
Q ss_pred HHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChh
Q psy10729 134 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETT 212 (363)
Q Consensus 134 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~ 212 (363)
+.++..+.. .......++..+..++.+.++.++..++..+..++...+.. .. + ....+.++..+. +++..
T Consensus 314 ~~~i~~l~~------~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~-~-~~~~~~i~~~L~~d~d~~ 384 (621)
T 2vgl_A 314 ISLIIHHDS------EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EA-V-KTHIETVINALKTERDVS 384 (621)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HH-H-HTTHHHHHHHHTTCCCHH
T ss_pred HHHHHhcCC------cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HH-H-HHHHHHHHHHhccCCCHh
Confidence 778777742 22345567888999999999999999999999999765421 22 2 245788888888 88999
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..++.++..++. +.+.+.++ ..|...+.+.+.+++..++.+++.++..
T Consensus 385 Ir~~aL~lL~~l~~--~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 385 VRQRAVDLLYAMCD--RSNAQQIV-----AEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHHHHHCC--HHHHHHHH-----HHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--hhhHHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999974 45555444 4477888888899999999999998853
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-07 Score=98.15 Aligned_cols=291 Identities=11% Similarity=0.057 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC----------------chh
Q psy10729 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA----------------RAR 105 (363)
Q Consensus 42 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~----------------~~~ 105 (363)
+.+|..|+.+|..++...++....++ ...+|.++..+.++++.++..++.++..+..... .+.
T Consensus 347 ~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1230)
T 1u6g_C 347 WKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL 425 (1230)
T ss_dssp THHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHH
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchH
Confidence 45788999999998864443223333 4678888888888889999999988877763110 011
Q ss_pred HHH--hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCCh--hhHHHHHHHHHH
Q psy10729 106 DLL--LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV--ETLSDICWALSY 181 (363)
Q Consensus 106 ~~~--~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~--~v~~~al~~L~~ 181 (363)
..+ .-..+++.+.+.+.+.+ ..++..++.++..++...... -......+++.+...+.+.++ .++..++..+..
T Consensus 426 ~~~~~~l~~ll~~l~~~l~~~~-~~vr~~~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 426 TMLQSQVPNIVKALHKQMKEKS-VKTRQCCFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHTTHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 111 11234566666677665 478888889999888764221 112456788999999988664 899999999998
Q ss_pred hccCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC--C-----hhHHHHHHHcCchHHHHHhh--cCC
Q psy10729 182 ISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG--N-----DHQTDCVIQAGGLQKMKKLL--SSS 251 (363)
Q Consensus 182 l~~~~-~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~--~-----~~~~~~l~~~~~l~~L~~~l--~~~ 251 (363)
+.... +......+ ..++|.++..+.+.++.++..|+.+++.++.. . ........ ..+++.++..+ .+.
T Consensus 504 ~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 504 ILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI-KDLFTCTIKRLKAADI 581 (1230)
T ss_dssp HHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH-HHHHHHHHHHHSCSSS
T ss_pred HHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH-HHHHHHHHHHHhccCC
Confidence 87432 22223333 46899999999998888999999999988742 1 01111222 24677788888 566
Q ss_pred hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH--------------HcCcHHHHHHHhcC
Q psy10729 252 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVE--------------ESGGLEKLEALQHH 317 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~--------------~~~~~~~L~~l~~~ 317 (363)
++++|..|+.+++.++....+.....+...+..+................+. -...++.|......
T Consensus 582 ~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~ 661 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK 661 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh
Confidence 7899999999999998643222222222222222222111000000011111 01235566667778
Q ss_pred CcHHHHHHHHHHHHhhcCCC
Q psy10729 318 ENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~~~~~~ 337 (363)
.+..++..|..++..+....
T Consensus 662 ~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 662 NQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 88999999988887765433
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-07 Score=76.46 Aligned_cols=185 Identities=15% Similarity=0.062 Sum_probs=150.3
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+.+..+..++.+.|+.++..++.+|..+....|..-....-..++|.+++++.+.+ +.+...+..||..|..+.+. .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL--~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPM--G 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCB--C
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCC--C
Confidence 46888999999999999999999999999765554445555788999999998777 69999999999999988632 3
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
......+..++..++.++++-++..++..++.+.-..... ++...+.+++.+.++.++..++.++.+++..+.
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3444567788999999999999999999999994333221 336788888999999999999999999987443
Q ss_pred --hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 --HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 --~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..+ +++.-+-.++++.++.+++.|..++-.+...
T Consensus 183 D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 3332 5666688899999999999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.4e-08 Score=76.84 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=149.6
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.+..+.++|.+.|+.++..++.+|..+...-+.......-..+++.++.++++.++.+.-.|+.|+..+..+.|-..+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 67899999999999999999999999998653333333333478999999999999999999999999999887765444
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+ .....++..++..++ .-++..++..+..+--.. ....++..+.+++.+.|+.++..+++++.+++..+.
T Consensus 113 y--~Kl~~aL~dlik~~~-~il~~eaae~Lgklkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPD-DMMRIETIDVLSKLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp H--HHHHHHHHHHTTSCC-HHHHHHHHHHHHHCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred H--HHHHHHHHHHhcCCC-chHHHHHHHHhCcCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4 346788888888666 588999999999882221 124567788889999999999999999999996543
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
+. . +-.+++.-+-.+|+++|+.++..|+.++-.+...
T Consensus 183 D~-~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DS-G--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SC-C--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CH-H--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 21 1 1236678888899999999999999999999874
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-08 Score=84.47 Aligned_cols=185 Identities=10% Similarity=0.090 Sum_probs=140.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
+.+...+.+.++..|..++..|..+....+...... ...+++.+...+. +.+ ..++..++.++..|+..-.+ .-..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~-~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAK-RFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhh-hHHH
Confidence 457788889999999999999999986533211111 1235677777884 555 68999999999999975422 1123
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DH 230 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~ 230 (363)
....++|.+...+.+.++.++..+..++..+....+. . .+++.+...+.+.++.+|..++..|+.++... +.
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999999865431 2 24788899999999999999999999976542 33
Q ss_pred -HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 231 -QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 231 -~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.....+. .+++.+...+.+.++++|..|..+++.++.
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222333 588999999999999999999999999875
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-08 Score=85.65 Aligned_cols=184 Identities=10% Similarity=0.129 Sum_probs=138.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCC-chhHHH
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA-RARDLL 108 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~-~~~~~~ 108 (363)
+.+.+.+++.++..|..|+..|..+....+.....-. ..+++.+...+. +++..++..++.+++.++..-. ....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 4477788899999999999999998754222110000 134677888884 8999999999999999994311 1111
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC-h
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH-N 187 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~-~ 187 (363)
....++|.++..+.+.. ..++..+..+|..++.... ...+++.+...+++.++.++..++..|+.+.... +
T Consensus 95 ~~~~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKK-PNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 12457899999998776 5899999999999987542 3568899999999999999999999999965442 2
Q ss_pred h-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 188 D-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 188 ~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
. .....+. .++|.+..++.+.++++|..|..+++.++.
T Consensus 167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 1122222 568999999999999999999999999875
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=89.57 Aligned_cols=282 Identities=9% Similarity=0.080 Sum_probs=180.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc--CCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll--~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+++.+.+-+.++++.++..|+++|+++.. ++... .+++.+.+++ .++++-||..|+.++..+...+|+.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~-- 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL-- 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh--
Confidence 35566777788899999999999999973 44333 5578888999 8899999999999999999765543
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH----HhhccC-------------Ch
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN----QLIHTT-------------DV 169 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~----~ll~~~-------------~~ 169 (363)
+...+.++.+.++|.+.+ ..++..++.++..++.... ......+|.++ .++... ++
T Consensus 183 -~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 183 -VPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNP-----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp -CCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCH-----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred -cCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 222488999999997666 5899999999999987642 11223444444 343221 67
Q ss_pred hhHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhh---------cCCCh--hhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 170 ETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLVELL---------DSEET--TILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~-~~~~~~~~~~g~l~~l~~lL---------~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
-.+...+..++.++... +.....+.+ .++.++..+ ++.+. .+..+++.++..+.. ++...+
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~---- 328 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV---- 328 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH----
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH----
Confidence 78899999999988643 333333322 344444332 12232 688889999888853 333332
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-hccc--chHHHHHHH----Hc---Cc
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIAL-QVGE--LNQMALLVE----ES---GG 307 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~-~~~~--~~~~~~~l~----~~---~~ 307 (363)
.++..|..++.++++.++..|..+|..++...+. ..++......++.+.. .-.. .......+. +. ..
T Consensus 329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~I 405 (621)
T 2vgl_A 329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI 405 (621)
T ss_dssp -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHH
Confidence 3566788889888999999999999999976431 0122222222222211 1000 000011111 11 23
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 308 LEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 308 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
+..|..+....+.+.+..+...+..+...
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 45556666677888888888777776543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=98.10 Aligned_cols=165 Identities=12% Similarity=0.121 Sum_probs=128.5
Q ss_pred ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH-HHHhhccCChhhHHHHHHHHHHhccC-ChhhH
Q psy10729 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL-LNQLIHTTDVETLSDICWALSYISDG-HNDKI 190 (363)
Q Consensus 113 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~-l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~ 190 (363)
.+.++++.|++++ ...+..++++|++|+.+. .........++++. +..+|.+++.+++..|+++|+||+.. ..+..
T Consensus 35 ~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPD-AKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3445667788877 489999999999999754 33334445566655 56688899999999999999999844 34556
Q ss_pred HHHHhcCChHHHHHhhcCCC---------------------hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc
Q psy10729 191 QAVVDTGVVPRLVELLDSEE---------------------TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~---------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
..++..|+++.|..++.... ..+...++.+|.+++.+++...+.+.+.+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 77899999999999885311 124556888999999888888888888899999999984
Q ss_pred CC---hHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 250 SS---RVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 250 ~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+. ..+++..|+.+|..++..+++.++.+.+
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~ 225 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITD 225 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 32 4689999999999999998887776665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-07 Score=87.83 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=160.2
Q ss_pred CHHHHHHhcCCCC--------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 29 VVPICVELLDDEN--------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 29 ~l~~L~~lL~~~~--------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
++..|...|.+++ +.++..|+..|+.+..++.+. .+++.|..++.+.+..+++.++.+|+.+..+
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 3556666664433 678888999999976553211 3467778888777777778899999988544
Q ss_pred CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHH
Q psy10729 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWAL 179 (363)
Q Consensus 101 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L 179 (363)
+... + ++..|+..+....+..+++.++.+|+.+..+. ...++.++..|. ..++-++..++.++
T Consensus 503 Tgn~-~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~al 566 (963)
T 4ady_A 503 TGKP-E------AIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTI 566 (963)
T ss_dssp CCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCH-H------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3221 1 23455555544445689999999999887765 234555665554 57888888888877
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh-cCChHhHHH
Q psy10729 180 SYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-SSSRVNIVK 257 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~ 257 (363)
+.-..+..+. .. ++.|+..+ ++.+..+|..|+.+|+.+..++++ .++.++..+ ++.++.+|.
T Consensus 567 glAyaGTGn~-~a------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 567 ALAYAGTGNN-SA------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHTTTSCCH-HH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHhcCCCCH-HH------HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 7554333321 11 44444444 455778999999999998876652 345555544 567899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 258 EAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 258 ~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
.|+++|+.++.+++.. ..++.|..+.++.+..|++.|..++....-..
T Consensus 631 gAalALGli~aGn~~~--------------------------------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ--------------------------------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHHHHHTSSSCCH--------------------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhccCCCcH--------------------------------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999865421 13345666677777777777777776655544
Q ss_pred ccC
Q psy10729 338 AEN 340 (363)
Q Consensus 338 ~~~ 340 (363)
.+.
T Consensus 679 nna 681 (963)
T 4ady_A 679 TEK 681 (963)
T ss_dssp CTT
T ss_pred ccc
Confidence 433
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=82.85 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=139.2
Q ss_pred HHHhcCCCChhHHHHHHHHHHH-hcCCChHhHHHHHh-CCChHHHHHhc-CCCCHHHHHHHHHHHHHhhCCC--Cchh-H
Q psy10729 33 CVELLDDENPNTQFEATWALTN-IASGTSEQTMTVIN-ANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDG--ARAR-D 106 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~-l~~~~~~~~~~i~~-~~~i~~l~~ll-~~~~~~v~~~a~~~L~nl~~~~--~~~~-~ 106 (363)
+.+.+.+.+|..|..|+..|.. ++.+.++......+ ..++..+...+ ++.+..++..|+.+++.|+.+- +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5566689999999999999999 87443322100000 13466777888 6889999999999999998432 1221 1
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.. ...+|.++..+.+.. ..++..+..++..++..-++.........+++.+...+++.++.++..++.+|..+....
T Consensus 101 y~--~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HH--HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 21 346889999888766 588888889998888754332111113568888999999999999999999999998554
Q ss_pred h---hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 187 N---DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 187 ~---~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
. ......+...++|.+.+++.+.++++|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4 222233335779999999999999999999999999874
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=79.07 Aligned_cols=195 Identities=7% Similarity=0.055 Sum_probs=139.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hhCCCCchhHHHhh-cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-CCCCH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGN-IAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDF 150 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~ 150 (363)
.+...+.+.++.-|..++..|.. ++...+........ ...++.+...+..+.+..++..++.++..|+.+-. +....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788999999999999999 87543332100001 23466777777433336889999999999997653 22221
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND- 229 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~- 229 (363)
.....++|.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+.++++.+|..++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 4556789999999999999999998888888875432110000001247888899999999999999999999987443
Q ss_pred --hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 230 --HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 230 --~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
......+...++|.|.+.+.+.++++|..|..++..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222233424789999999999999999999999998874
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=83.02 Aligned_cols=213 Identities=8% Similarity=0.030 Sum_probs=107.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
++.+.+-++++++-++..|+++|+++... +... .+.+.+.+.+.+.++-|+..|+.+...+....|+..
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v---- 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV---- 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----
Confidence 44455555666666777777777777632 2222 234556666667777777777777777765554422
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC---ChhhHHHHHHHHHHhccCC
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---DVETLSDICWALSYISDGH 186 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~v~~~al~~L~~l~~~~ 186 (363)
.++++.+.+++.+.+ ..++.+++.+|..+...+ ...+..++..+... ++-.+...++.+..+...+
T Consensus 175 -~~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d---------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d 243 (355)
T 3tjz_B 175 -KRWVNEAQEAASSDN-IMVQYHALGLLYHVRKND---------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE 243 (355)
T ss_dssp -HTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----
T ss_pred -HHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc---------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc
Confidence 356666666666555 356666666666666542 11222333333321 3444444445554444433
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
+.. .....++.+..+|++.++.|..+|++++..+...... .. ..++..|..++.++++.+|..|...|..+
T Consensus 244 ~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 244 DGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp -----------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred chh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 111 1234566777777888888888888888887442221 11 24566677777888888888888888888
Q ss_pred hcCCHHH
Q psy10729 267 TAGNSRQ 273 (363)
Q Consensus 267 ~~~~~~~ 273 (363)
+...|+.
T Consensus 315 ~~~~P~~ 321 (355)
T 3tjz_B 315 AMKHPSA 321 (355)
T ss_dssp -------
T ss_pred HHHCcHH
Confidence 7765543
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-07 Score=83.26 Aligned_cols=234 Identities=18% Similarity=0.206 Sum_probs=156.5
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHhcC----C----------C---CHHHHHHHH
Q psy10729 32 ICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLS----S----------P---HLNLAEQAT 91 (363)
Q Consensus 32 ~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~ll~----~----------~---~~~v~~~a~ 91 (363)
.++..|.. ++.+.+.-++.+|..+. ..++.|..+.+.+ .+|.++.++. + + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45555543 34566778999999988 4688888887653 3666654332 1 1 246789999
Q ss_pred HHHHHhhCCCCchhHHHhhcCCh--HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC-C----HHHHHhHHHHHHHhh
Q psy10729 92 WALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP-D----FEKIKICLPLLNQLI 164 (363)
Q Consensus 92 ~~L~nl~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-~----~~~~~~~i~~l~~ll 164 (363)
.|++-++... ...+.+...+.. +.|+.+++....+++.+-++.+|.|+........ . ......+++ ++..|
T Consensus 250 l~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSL 327 (480)
T ss_dssp HHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHH
T ss_pred HHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHH
Confidence 9999999764 444555545533 5667778866668999999999999998652111 1 111233444 44444
Q ss_pred cc---CChhhHHHHHHHHHHhc------cCChhhHHHHH--------------------------hcCChHHHHHhhcC-
Q psy10729 165 HT---TDVETLSDICWALSYIS------DGHNDKIQAVV--------------------------DTGVVPRLVELLDS- 208 (363)
Q Consensus 165 ~~---~~~~v~~~al~~L~~l~------~~~~~~~~~~~--------------------------~~g~l~~l~~lL~~- 208 (363)
.. .|+++....-.....|. +..+++...+. +..++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 33 56766554333222221 11111111111 11257888888973
Q ss_pred ---------CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 209 ---------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 209 ---------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.++.+..-||.=++.++++.|..+..+-+.|+-..++.++.+++++|+.+|..++..+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988888888999999999999999999999999988764
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-08 Score=76.36 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=93.3
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
....++.+..+|+++++.+|..|++.|+.+.. ..++.|+.+++++++.++..++++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 34667889999999999999999999987752 126899999999999999999999999862
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
...++.|...+.+++ ..++..++|+|..+.. ...++.|..+++++++.++..++.+|+.+
T Consensus 72 -----~~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCC-THHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 124788888887666 4899999999998852 35688899999999999999999998764
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-06 Score=73.93 Aligned_cols=208 Identities=10% Similarity=0.079 Sum_probs=142.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.+..-+++++.++|..++......+.+++...++ ++ =+++.+.+=++++++-++..|+++++++... +.-+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e----~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~- 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED----VI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ- 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC----GG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH----HH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-
Confidence 3455567888999999999999999988855222 11 3577888888999999999999999999743 3322
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
.+.+++-+.+.+.+ ..+++.|+.+...|..... ....+++..+.+++.+.++.+...|+.++..+...+.
T Consensus 139 ----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp ----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 33567777888877 4899999999998886642 3446789999999999999999999999999987553
Q ss_pred hhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
.. +..++..+... ++-.+..-++.+..++..+ +... ..+++.+...+++.++.|..+|+.++
T Consensus 209 ~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~-----~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 209 LA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD-----SPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp HH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 22 33344444332 3545555566666665544 2222 35677788888999999999999999
Q ss_pred HHHhc
Q psy10729 264 SNITA 268 (363)
Q Consensus 264 ~nl~~ 268 (363)
..+..
T Consensus 275 ~~l~~ 279 (355)
T 3tjz_B 275 VNLPG 279 (355)
T ss_dssp TC---
T ss_pred HhccC
Confidence 99865
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-08 Score=75.64 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=92.3
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 69 ~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
...++.+..+|+++++.++..++++|+.+... .++.|+.++.+++ ..++..++|+|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~-~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNED-WRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSC-HHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCC-HHHHHHHHHHHHhcCC------
Confidence 46788899999999999999999998876421 2588899998766 6999999999998753
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
...++.+..+++++++.++..++++|+.+.. + ..++.|.++++++++.++..|+++|+++
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468889999999999999999999999862 1 2378899999999999999999998764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-06 Score=80.89 Aligned_cols=200 Identities=14% Similarity=0.157 Sum_probs=141.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCC--ChHhHHHHHhCCChHHHHHhc-CCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASG--TSEQTMTVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
++.|...+.+.+..++..|+..|+.+-.+ +.+. +..|+..+ .+.++++++.++.+|+.+....++
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---------i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e--- 541 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---------IHDMFTYSQETQHGNITRGLAVGLALINYGRQE--- 541 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---------HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence 66777777666667777888899887333 3322 34444443 456789999999999999866544
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh-hccCChhhHHHHHHHHHHhccC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL-IHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l-l~~~~~~v~~~al~~L~~l~~~ 185 (363)
.++.+++.|....+.-++..++.+++.-+.+..+ ...++.|... ..+.+..++..|+.+|+.+..+
T Consensus 542 ------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 542 ------LADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp ------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred ------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence 3567777776444457777777776654444322 2344433333 3456788999999999998866
Q ss_pred ChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
.++. ++.++.++ ++.++.+|..|+.+|+.++.+++.. .+++.|..+.++.+..|+..|+.+|+
T Consensus 609 ~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 6532 55666644 5678999999999999999877642 24566888888999999999999999
Q ss_pred HHhcCC
Q psy10729 265 NITAGN 270 (363)
Q Consensus 265 nl~~~~ 270 (363)
.+..++
T Consensus 673 ~Ig~gt 678 (963)
T 4ady_A 673 MILIQQ 678 (963)
T ss_dssp HHSTTC
T ss_pred HHhcCC
Confidence 999863
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-06 Score=77.65 Aligned_cols=220 Identities=12% Similarity=0.119 Sum_probs=143.2
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHc--CCHHHHHHhcC----C-----------C--ChhHHHHHHHHHHHhcCCChHhHH
Q psy10729 4 IATRSARKMLSKERHPPIDELIEA--GVVPICVELLD----D-----------E--NPNTQFEATWALTNIASGTSEQTM 64 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~--g~l~~L~~lL~----~-----------~--~~~i~~~a~~~L~~l~~~~~~~~~ 64 (363)
-++.+|..++.... +...+.+. +.++.++..+. + . ..+++++++.|+.-++. +++...
T Consensus 187 i~v~~L~~Ll~~~~--~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~ 263 (480)
T 1ho8_A 187 VCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFAN 263 (480)
T ss_dssp HHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHHhcchh--HHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHH
Confidence 35666666665543 33455443 24666654431 1 1 34678999999999995 466666
Q ss_pred HHHhCCCh--HHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCch-----hHHHhhcCChHHHHHhhC--CCCcHhHHHHHH
Q psy10729 65 TVINANAI--PKFLQLLS-SPHLNLAEQATWALGNIAGDGARA-----RDLLLGLGTMPQILALVQ--PNTPTTFLRNIV 134 (363)
Q Consensus 65 ~i~~~~~i--~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~ 134 (363)
.+...+.. +.++..++ +..+++.+-++.+|.|+....+.. .+.+...++++ ++..|. .-.++++....-
T Consensus 264 ~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~ 342 (480)
T 1ho8_A 264 ELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDIS 342 (480)
T ss_dssp HHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHH
Confidence 66665533 55666666 566999999999999999765321 22333344544 555553 334455555544
Q ss_pred HHHHHhhcC---------------------CCCCCCH-----------HHHHhHHHHHHHhhcc----------CChhhH
Q psy10729 135 WAISNLCRN---------------------KNPAPDF-----------EKIKICLPLLNQLIHT----------TDVETL 172 (363)
Q Consensus 135 ~~L~~l~~~---------------------~~~~~~~-----------~~~~~~i~~l~~ll~~----------~~~~v~ 172 (363)
.....|... ++..... .....++..|+.+|++ .|+.+.
T Consensus 343 ~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~l 422 (480)
T 1ho8_A 343 NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 422 (480)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceE
Confidence 332222111 0000010 0124567889999973 478899
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.-||.=++.++...|..+..+-+.|+=..+++++.+++++|+.+|+.++..+..+
T Consensus 423 aVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 423 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred EeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999988888777777789999999999999999999999999987653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00087 Score=66.47 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=156.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-ChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchh
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
+.+|.++..+.+....++..|-.++..+... ++... . .++|.++..|++. .+..+..|+.++..++...|..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~- 168 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-K----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ- 168 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-H----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-
Confidence 6899999999888889998888777776643 33332 2 4589999988754 5899999999999999664432
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
-...--.++|.+...+-+.. .++...+..++..+|..-++. .....+|.|+..+.+++. ...+...|+.-+.-
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~----d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNK----DIERFIPSLIQCIADPTE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCT----TTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred HHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCc----chhhhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence 11112457888888888777 599999999999888754332 236789999999988743 33334444443322
Q ss_pred Ch--hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc--CChhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHH
Q psy10729 186 HN--DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--GNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAA 260 (363)
Q Consensus 186 ~~--~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~ 260 (363)
.. .-.-.++ +|.|.+-|......+++.++-++.|||. .++.....++ ..++|.+.+.... .+|++|..|.
T Consensus 242 ~~v~~~~l~~~----~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 242 AEVTPATLSIM----VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp SCCCHHHHHHH----HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eeecchhHHHH----HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHH
Confidence 11 1112222 6777777777788899999999999998 5666666555 3677888777765 4899998887
Q ss_pred HHHHHH
Q psy10729 261 WTISNI 266 (363)
Q Consensus 261 ~~L~nl 266 (363)
.++.-+
T Consensus 317 ~a~~~l 322 (986)
T 2iw3_A 317 RALKTL 322 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0005 Score=68.15 Aligned_cols=266 Identities=11% Similarity=0.116 Sum_probs=177.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh---HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTS---EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
+++..+.+.+.+..+. +.|+.++..++.... ..-.+++ +.+|.++....+....|+..|-.+...+...-+..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777777544333 889999999985432 2223344 68999999999988999988888877776433322
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
. + ...+|.|+..|.....=+....++.++..|+... +..-.....+++|.+...+.+..+++...+..++..+|.
T Consensus 130 a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 130 A--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp G--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred H--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 1 1 4568999998875544567788888999998764 322233457889999999999999999999999998884
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHH
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
--++. .. ...+|.|++.+.+++. ...++..|+..+--..-....+. =.+|.|..-|...+..+++.++..+-
T Consensus 205 ~~~n~-d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 205 TVDNK-DI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GCCCT-TT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cCCCc-ch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEc
Confidence 32211 10 1348999999987743 55566666654432211111111 24677777788888889999999999
Q ss_pred HHhc--CCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHH-hcCCcHHHHHHHHHHHHhhcCC
Q psy10729 265 NITA--GNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEAL-QHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 265 nl~~--~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l-~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
|||. .++.....++. ..++.+... ....+||+|+.|.+++.++..-
T Consensus 277 n~~~lv~~~~~~~~f~~--------------------------~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLG--------------------------KLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHTTCCCHHHHHHHHT--------------------------TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhh--------------------------hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 9997 36655332222 133334432 3456788888777777776443
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0001 Score=63.23 Aligned_cols=183 Identities=11% Similarity=0.096 Sum_probs=128.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 153 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 153 (363)
.++.-|.+.+.+.++.++.-|..+...+......|+..+|+..|+++....+ ...+..++.++.++-.+.+....++..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccchhCC
Confidence 3445555677778889999999955455777889999999999999998775 689999999999988763211112223
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc----------CChHHHHHhhc---CCChhhHHHHHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT----------GVVPRLVELLD---SEETTILTAALRT 220 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~----------g~l~~l~~lL~---~~~~~v~~~a~~~ 220 (363)
..++..+..++.+.+..+.+.|+.+|..++..++.....+.+. ..++.++.+|+ +.+.+++..|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5577888888888889999999999999987765443333221 24789999997 6678899888887
Q ss_pred HHHhhcCCh--h----HHHHHHHcCchHHHHHhhcCC--hHhHHH
Q psy10729 221 VGNIATGND--H----QTDCVIQAGGLQKMKKLLSSS--RVNIVK 257 (363)
Q Consensus 221 L~nl~~~~~--~----~~~~l~~~~~l~~L~~~l~~~--~~~v~~ 257 (363)
+-.+..+-+ + ....+-+.|+-..+...++.. ++++++
T Consensus 281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 776665422 2 122233445555566656554 445544
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00024 Score=60.97 Aligned_cols=188 Identities=14% Similarity=0.079 Sum_probs=128.2
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHH-h
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV-D 195 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~ 195 (363)
+++.|.+.+ .+..+.++.-|..+.+.+..........+++..|+......+...+..+++++.++..+.+.. .-++ .
T Consensus 123 iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVAH 200 (339)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHHC
T ss_pred HHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhCC
Confidence 344444444 466777888888855443333444556788999999999999999999999999999876644 3333 3
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc----------CchHHHHHhhc---CChHhHHHHHHHH
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA----------GGLQKMKKLLS---SSRVNIVKEAAWT 262 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~l~~L~~~l~---~~~~~v~~~a~~~ 262 (363)
...+..+..++.+.+..|.+.|+..|..++..++.....+.++ ...+.|+.+|+ ..+.+++.+|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 3568888888998888899999999999998766554444331 24778999997 6688999988776
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHH
Q psy10729 263 ISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE--NETVYQK 325 (363)
Q Consensus 263 L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~v~~~ 325 (363)
|..+..+-+.+- ........+.+.|.-..+.+.++.. +++++++
T Consensus 281 IN~lL~~apd~d-------------------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 281 INKTLAALPDQD-------------------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHCSSHH-------------------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHhcCCChh-------------------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 666554422110 0123345666666656677765554 5566554
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0016 Score=55.86 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=140.3
Q ss_pred HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh----HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR----DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 64 ~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
..+...+.+..|+..|..-+-+.+..+..++.++.+.....+ +.+.. -...+..++...+..++...+-..|+-
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 345667889999999998889999999999999987654322 22221 222222333322223445555555665
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC---ChHHHHHhhcCCChhhHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG---VVPRLVELLDSEETTILTA 216 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g---~l~~l~~lL~~~~~~v~~~ 216 (363)
...+. .........+.+-.+...++.++-++..+|..++..+...+......++... .+.....+|.+++.-.+..
T Consensus 150 cir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 55543 2222223334455666778888999999999999988876665545555443 4667778999999999999
Q ss_pred HHHHHHHhhcCCh--hH-HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 217 ALRTVGNIATGND--HQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 217 a~~~L~nl~~~~~--~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..|+.+..... .. .+.+-+..-++.++.+|.+.+..++.+|..++--++++
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9999999987422 22 22333446789999999999999999999999988886
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0027 Score=64.21 Aligned_cols=271 Identities=9% Similarity=0.060 Sum_probs=146.8
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-------hcCCCC---hhHHHHHHHHHHHhcCCChHhH---------
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVE-------LLDDEN---PNTQFEATWALTNIASGTSEQT--------- 63 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~-------lL~~~~---~~i~~~a~~~L~~l~~~~~~~~--------- 63 (363)
..|+.++..++..........++. .+++.++. .+...+ .+.....++.+..++......-
T Consensus 262 ~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 340 (971)
T 2x1g_F 262 ESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADP 340 (971)
T ss_dssp HHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 357778888777533110111111 12233322 123334 2666677777777764322211
Q ss_pred ---HHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCC---------CCchhHHHh--hcCChHHHHHhhCCC
Q psy10729 64 ---MTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGD---------GARARDLLL--GLGTMPQILALVQPN 124 (363)
Q Consensus 64 ---~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~--~~g~i~~L~~ll~~~ 124 (363)
..+. ..++.++.+... .++++...+++.+..++.. .+..+..+. -...++.++..+..+
T Consensus 341 ~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p 418 (971)
T 2x1g_F 341 ELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQP 418 (971)
T ss_dssp HHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 445566665533 3577888999988887631 111111111 124455555555422
Q ss_pred Cc--------------HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CChhhHHHHHHHHHHhccC
Q psy10729 125 TP--------------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWALSYISDG 185 (363)
Q Consensus 125 ~~--------------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~al~~L~~l~~~ 185 (363)
++ ...+..+..++..++.... ......+.+.+...+.+ .+...++.++.+++.++.+
T Consensus 419 ~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~----~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~ 494 (971)
T 2x1g_F 419 DEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN----DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEH 494 (971)
T ss_dssp CTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT----THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC
T ss_pred CcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhh
Confidence 21 1355666777777776432 12334444555555543 5667889999999999977
Q ss_pred ChhhHHHHHhcCChHHHHHhh---c--CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL---D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 260 (363)
...... ..++.+++++ . ++++.++..++++++.++.--....+ .+. .+++.++..++ +.++..|+
T Consensus 495 ~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l~---~~v~~~A~ 564 (971)
T 2x1g_F 495 FGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGLN---SSMSAQAT 564 (971)
T ss_dssp -----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHHH---SSCHHHHH
T ss_pred cChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhC---hHHHHHHH
Confidence 654321 2234444333 3 34788999999999998752111111 111 35556666662 78999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q psy10729 261 WTISNITAGNSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 261 ~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~ 290 (363)
+++.+++......+...++..+..+.....
T Consensus 565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 565 LGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 999999977666666666655555544443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00078 Score=68.05 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-----CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 43 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-----SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
.++..++.+|..++...++.-...+ ..+++.....+. ...+.++..++..+..++.. +..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHH
Confidence 4677788888887754433222111 134555555553 34578899999999998864 2223222111223333
Q ss_pred H-----HhhCC----------------------CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-----
Q psy10729 118 L-----ALVQP----------------------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----- 165 (363)
Q Consensus 118 ~-----~ll~~----------------------~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----- 165 (363)
+ ..+.. .+....+..+..+|..++.... ......+++.+...+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~----~~v~~~~l~~i~~~l~~~~~~ 414 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE----VLVTNIFLAHMKGFVDQYMSD 414 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHHhccC
Confidence 3 33321 0111355666777777776541 1223345556656665
Q ss_pred -cCChhhHHHHHHHHHHhccCC---hh---------hHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhcCCh
Q psy10729 166 -TTDVETLSDICWALSYISDGH---ND---------KIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGND 229 (363)
Q Consensus 166 -~~~~~v~~~al~~L~~l~~~~---~~---------~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~~~~ 229 (363)
+.+...++.|+.+++.++.+. +. ....++ ...++..+.++ ++.+|..|||+++.++..-+
T Consensus 415 ~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~ 490 (960)
T 1wa5_C 415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT 490 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence 456678899999999997532 10 111111 12234445556 78899999999999976421
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHh
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-----------NSRQIDHVIQEGLDNLLEIALQ 291 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-----------~~~~~~~~~~~~l~~ll~~~~~ 291 (363)
.... ..+++.++..+.++++.|+..|+++|.+++.. ..+.+...+...+..++.....
T Consensus 491 ---~~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 491 ---KAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp ---HHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred ---HHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 1122 24677788888888899999999999999863 2334445555555555555443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0012 Score=56.39 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=126.0
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhH--HHHH-h-CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQT--MTVI-N-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR- 103 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~--~~i~-~-~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~- 103 (363)
-+| |-+-|.+.+|..|..|+.-|..+....+... .... . ....+.+...+.+.+..+...++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 344 5577899999999999999988764433221 1111 1 24566778889999999999999999988743211
Q ss_pred --hh--HHHhhcCChHHHHHh-hCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHH
Q psy10729 104 --AR--DLLLGLGTMPQILAL-VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178 (363)
Q Consensus 104 --~~--~~~~~~g~i~~L~~l-l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~ 178 (363)
.+ .......++|.|+.- +.+.. ..++..+..++..++....+ ...+++.+...+.+.+|.++..++..
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTS------ITQSVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSS------SHHHHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 11 112234567777764 55554 47788888887777654321 12345677788899999999999988
Q ss_pred HHHhccCC--hh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 179 LSYISDGH--ND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 179 L~~l~~~~--~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
|..+.... .. .....+ ..+++.+..++.+.++.||..|..++..+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88876321 10 011111 1346778889999999999999999988865
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0024 Score=64.49 Aligned_cols=216 Identities=11% Similarity=0.083 Sum_probs=122.0
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhC-----CChHH----HHHhcCCC---CHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINA-----NAIPK----FLQLLSSP---HLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-----~~i~~----l~~ll~~~---~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
++++..++.|+.+++.++.+...... -... .+.+. ++..+.++ ++-+|..++|+++.++..-+ .+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH
Confidence 56788999999999999743110000 0000 12222 23334555 78999999999999986532 12
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC------CC--C--CHHHHHhHHHHHHHhhccCC---h--hh
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN------PA--P--DFEKIKICLPLLNQLIHTTD---V--ET 171 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~------~~--~--~~~~~~~~i~~l~~ll~~~~---~--~v 171 (363)
. -...++.+++.|.+.+ ..++..++++|.+++...+ +. . -......+++.+..+++... + ..
T Consensus 493 ~--l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 493 Q--LIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp H--HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred H--HHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 2 2456788888887654 6899999999999987522 01 1 11123556666777776641 1 12
Q ss_pred HHHHHHHHHHhccC----ChhhHHHHHhcCChHHHHHhh----cC-CChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCch
Q psy10729 172 LSDICWALSYISDG----HNDKIQAVVDTGVVPRLVELL----DS-EETTILTAALRTVGNIATG-NDHQTDCVIQAGGL 241 (363)
Q Consensus 172 ~~~al~~L~~l~~~----~~~~~~~~~~~g~l~~l~~lL----~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l 241 (363)
...+..++..++.. -...... +++.+...+ ++ +++..+..++.+++.++.. .++....+. ..++
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~ 643 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMM 643 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHH
Confidence 23455555554421 1112222 234444443 22 3556777788889888875 334333333 3467
Q ss_pred HHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 242 QKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 242 ~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
|.+..++.....+...++...+..+
T Consensus 644 p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 644 PTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 7777777665444444444444333
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0029 Score=52.93 Aligned_cols=183 Identities=8% Similarity=0.001 Sum_probs=122.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh----CCCCch
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA----GDGARA 104 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~----~~~~~~ 104 (363)
+-+-+...+-+.+..-+..|+..|......+++......+ .+++.+.--+.+.+..+...++.+|..+. ..+...
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4445666666778888888888888876444432211111 12444433344678888888888777764 221111
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
... ...-.+|.|+.-+.+.. +.++..+-.++..++.-. ....+++.+...+.+.+...+..++..++.+..
T Consensus 126 ~~~-ea~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 126 SQE-EVSAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CHH-HHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111 11346899999887776 578888777777766422 225578888899999999999999999999873
Q ss_pred CChhhHHHHHhcCCh---HHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 185 GHNDKIQAVVDTGVV---PRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l---~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
..... ....+ +.+.+++.+.+..||..|+.++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 32211 13458 999999999999999999999987754
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0075 Score=51.29 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=124.0
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch--hHH-Hhh-cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--RDL-LLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--~~~-~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
+| +-.-|.+.++..|..++.-+..+....+.. ... +.. ....+.+-..+.+.+ ..++..++.++..++......
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhh
Confidence 44 557788999999999999998877443221 011 111 223445555665555 688999999998887654222
Q ss_pred C-C----HHHHHhHHHHHHHh-hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 148 P-D----FEKIKICLPLLNQL-IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 148 ~-~----~~~~~~~i~~l~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
. . ......++|.++.- +.+..+.++..+..++..++...... .. +++.+...+.+.+|.++..++..|
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHH
Confidence 1 1 11235567777764 77788889988888887776433221 11 146677788999999999999999
Q ss_pred HHhhcC--Chh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 222 GNIATG--NDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 222 ~nl~~~--~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+... ... ..+..+. .+++.+..++.+.++.||..|..++..+-..
T Consensus 164 ~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 988752 111 1122222 3566788888999999999999998887654
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0072 Score=50.57 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=118.2
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH----hhCCCCcHhHHHHHHHHHHHhhc---CC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA----LVQPNTPTTFLRNIVWAISNLCR---NK 144 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~----ll~~~~~~~~~~~~~~~L~~l~~---~~ 144 (363)
=+.+...|.+.+.+-+..++..|......++. ..+ ..++.+++ -+.+. +..+...++..|..+.. ..
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666677777677777777666543222 111 12222322 22233 35677676666665532 22
Q ss_pred CCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 145 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
+.........-++|.++.-+.+....++..+-.++..+..-.+.. .+++.+.+-+.+.+...|..++..+..+
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 233343445778999999999999999988888887776432221 2367778888999999999999999999
Q ss_pred hcCChhHHHHHHHcCch---HHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 225 ATGNDHQTDCVIQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 225 ~~~~~~~~~~l~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
....... ..+.+ +.+..++.+.+..||..|..++..+-.
T Consensus 195 i~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 195 ITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7632111 24578 999999999999999999998886654
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.30 E-value=0.01 Score=59.92 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=134.1
Q ss_pred hhHHHHHHHHhhcCCCCCc-HHH---HHH--cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh-------HHHHHh
Q psy10729 2 RMIATRSARKMLSKERHPP-IDE---LIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ-------TMTVIN 68 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~-~~~---~~~--~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~-------~~~i~~ 68 (363)
+..|+.++..+++....+. .+. ++. -+..+.+.+.+...+.+.....+.++..++...+.. ...+.
T Consensus 256 ~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~- 334 (963)
T 2x19_B 256 FDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL- 334 (963)
T ss_dssp HHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred HHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH-
Confidence 3467778888776543221 111 111 012222222233345555556666776665321111 01111
Q ss_pred CCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCC--------CchhHHHh--hcCChHHHHHhhCCCCcH------
Q psy10729 69 ANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDG--------ARARDLLL--GLGTMPQILALVQPNTPT------ 127 (363)
Q Consensus 69 ~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~--~~g~i~~L~~ll~~~~~~------ 127 (363)
.+++.++.+..+ .++.+...++..+..++... +..+..+. -..+++.++..+..+++.
T Consensus 335 -~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~ 413 (963)
T 2x19_B 335 -ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWS 413 (963)
T ss_dssp -HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSC
T ss_pred -HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 445556665554 24556666666666665411 11111111 012344555545432211
Q ss_pred --------hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh----ccCChhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 128 --------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 128 --------~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll----~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
+.+..+..+|..++.... ......+.+.+...+ .+.+...++.++++++.++.+.....
T Consensus 414 ~de~~~~~~~r~~~~~~L~~~~~~~~----~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~----- 484 (963)
T 2x19_B 414 SDEKEQFRIYRVDISDTLMYVYEMLG----AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY----- 484 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----
Confidence 123444555655554321 112233444555555 45677789999999999997654321
Q ss_pred cCChHHHHHhh---cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 196 TGVVPRLVELL---DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 196 ~g~l~~l~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
...++.+++.+ .++++.++..++++++.++.--.... ..+ ..+++.++..+++ +.++..|++++.+++...
T Consensus 485 ~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 485 SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICREC 558 (963)
T ss_dssp CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH
Confidence 12234444433 33577899999999999875211111 233 3688888888865 789999999999999643
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.036 Score=55.93 Aligned_cols=219 Identities=9% Similarity=-0.007 Sum_probs=121.6
Q ss_pred CChhHHHHHHHHHHHhcCC---------ChHhHHHHHh--CCChHHHHHhcCCCC--------H-------HHHHHHHHH
Q psy10729 40 ENPNTQFEATWALTNIASG---------TSEQTMTVIN--ANAIPKFLQLLSSPH--------L-------NLAEQATWA 93 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~---------~~~~~~~i~~--~~~i~~l~~ll~~~~--------~-------~v~~~a~~~ 93 (363)
.++++...+++.+..++.. .+.....+.. ...++.++..+.-++ + ..|..+..+
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 4788899999988887631 1111111110 144555555553221 1 355666667
Q ss_pred HHHhhCCCCchhHHHhhcCChHHHHHhhCC----CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCC
Q psy10729 94 LGNIAGDGARARDLLLGLGTMPQILALVQP----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTD 168 (363)
Q Consensus 94 L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~ 168 (363)
+..++...+. .+. .-.++.+...+.. +.+-..++.+++++..++........ .....+++.+..+.. +.+
T Consensus 445 l~~~~~~~~~---~~l-~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 445 FMYCYDVLND---YIL-EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHTTCTT---HHH-HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHhH---HHH-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccC
Confidence 7777644331 110 1112222222221 12235788889999999876532211 122334443333332 247
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
+.++..++++++.++..-....+.+ ..+++.++..+ + +.++..|++++.+++...........+ .++..+..++
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l 593 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASL 593 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHH
Confidence 8999999999999984322111111 13466677777 2 789999999999999754433333332 4666677777
Q ss_pred cCC--hHhHHHHHHHHHHHHhcC
Q psy10729 249 SSS--RVNIVKEAAWTISNITAG 269 (363)
Q Consensus 249 ~~~--~~~v~~~a~~~L~nl~~~ 269 (363)
..+ +.+.+..+..+++.++..
T Consensus 594 ~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 594 NTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCChHHHHHHHHHHHHHHHh
Confidence 763 567888888888888764
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.023 Score=48.71 Aligned_cols=277 Identities=14% Similarity=0.154 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-C
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-P 123 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~ 123 (363)
...+...|+-+. +++...+-+++.+++..+...++-++.++.+..+..|...+....-+... -...+|.++..++ .
T Consensus 260 vtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 260 IIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccC
Confidence 344555565555 78889999999999999999999999999999999999987432222111 1467899999887 4
Q ss_pred CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-------CChh-------hHHHHHHHHHHhccC----
Q psy10729 124 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-------TDVE-------TLSDICWALSYISDG---- 185 (363)
Q Consensus 124 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-------~~~~-------v~~~al~~L~~l~~~---- 185 (363)
++ .++.......|+|...+..+..+.....+.++.+-..+.. .+.. +..++++++.|+...
T Consensus 337 ~e-DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm 415 (619)
T 3c2g_A 337 PD-DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT 415 (619)
T ss_dssp CC-HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CC-cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence 44 5888899999999998875555556667888887776543 2222 344455555554311
Q ss_pred --------Chhh---HHHHHhcCChHHHHHhhcCCCh------hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 186 --------HNDK---IQAVVDTGVVPRLVELLDSEET------TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 186 --------~~~~---~~~~~~~g~l~~l~~lL~~~~~------~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
.+.. ...+++-+++..++..|+-+.- ++|...++...-+.+ .+..- . +.+..+.
T Consensus 416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR-TP~~P-----k---d~~l~Vt 486 (619)
T 3c2g_A 416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR-TPFVP-----K---DGVLNVI 486 (619)
T ss_dssp TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT-CTTSC-----C---TTGGGCC
T ss_pred CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc-CCCCc-----h---hhhcccc
Confidence 0111 1223344566677776654421 345444444443333 11110 0 0122222
Q ss_pred cCC-hHhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHhcccch--------------------------
Q psy10729 249 SSS-RVNIVKEAAWTISNITA-----GNSRQIDHVIQEGLDNLLEIALQVGELN-------------------------- 296 (363)
Q Consensus 249 ~~~-~~~v~~~a~~~L~nl~~-----~~~~~~~~~~~~~l~~ll~~~~~~~~~~-------------------------- 296 (363)
++- ...+....+.+++..-. ......+++++.+++-++...++.+...
T Consensus 487 Dd~rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI 566 (619)
T 3c2g_A 487 DENRKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFI 566 (619)
T ss_dssp CTTTCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHH
T ss_pred chhhhhhhHHHHHHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHH
Confidence 221 11222223333332222 2456677888888777777655432110
Q ss_pred ----HHHHHHHH-cC--------cHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 297 ----QMALLVEE-SG--------GLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 297 ----~~~~~l~~-~~--------~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
..+..+.+ +- --..++.+.+|.|+++-+.|..++.+|=
T Consensus 567 ~NVL~VcDKILeHcP~~Ad~W~i~r~tle~l~NHsNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 567 HNVLVVCDKILEHCPTRADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRFP 617 (619)
T ss_dssp HHHHHHHHHHHHHCTTHHHHSCCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhCcchhccceechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence 11222222 21 1246777889999999999999998764
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.11 E-value=0.017 Score=58.43 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
.++..++.++++++.++.+-......-.-..+++.|+.++.+ +...++..++|+++.++..-....+.+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 679999999999999997643332222223667788888763 223466678899998874311101111 2234
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-------CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPA-------PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-------~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
..+++.+..+. ..+...|+|++.++|..-... .......+++..+......-++.-...+..+++.+....+
T Consensus 543 ~~L~~~l~~~~-~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 543 LKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHTTCSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 44555554444 589999999999999752110 0001233444445555555566677788888888876544
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0079 Score=60.69 Aligned_cols=218 Identities=12% Similarity=0.161 Sum_probs=128.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc---CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL---SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
.+.++..++.++++++.++.+-.... ...++.++..+ .++++.++..++|+++.++..-....+ .-...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHH
Confidence 45678899999999999997633211 12334444333 335788999999999999843111111 225788
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC--ChhhHHHHHHHHHHhccCCh-hhHH
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT--DVETLSDICWALSYISDGHN-DKIQ 191 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~-~~~~ 191 (363)
+.++..|.+ ..++..+++++..++...... -.....+++..+..++... +...+..+..+++.++...+ +...
T Consensus 532 ~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN---PELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC---chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888854 478999999999999753211 1122355666666666652 56788888899999875442 3223
Q ss_pred HHHhcCChHHHHHhh----cCC-ChhhHH---HHHHHHHHhhcC--C--h------------------hHHHHHHHcCch
Q psy10729 192 AVVDTGVVPRLVELL----DSE-ETTILT---AALRTVGNIATG--N--D------------------HQTDCVIQAGGL 241 (363)
Q Consensus 192 ~~~~~g~l~~l~~lL----~~~-~~~v~~---~a~~~L~nl~~~--~--~------------------~~~~~l~~~~~l 241 (363)
..++ .+++.+...+ ..+ +++.+. ..+.+|+.+... . + .....+. ..+.
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL-QQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH-HHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH-HHHH
Confidence 2222 2344444333 222 444433 344444444331 0 0 1111222 2355
Q ss_pred HHHHHhhcC--ChHhHHHHHHHHHHHHhc
Q psy10729 242 QKMKKLLSS--SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 242 ~~L~~~l~~--~~~~v~~~a~~~L~nl~~ 268 (363)
+.+..++.. .++.+.+.++.++..++.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 666666642 356888888989988764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.86 E-value=0.063 Score=54.69 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=110.0
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCC---CCchhHHHh--hcCChHHHHHhhCCCCc------------------
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD---GARARDLLL--GLGTMPQILALVQPNTP------------------ 126 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~--~~g~i~~L~~ll~~~~~------------------ 126 (363)
.+++.++.+...++.++...++..+..++.+ .+..+..+. -...++.++..+..+++
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 4567777777777888888888888888751 122221111 12344555555432110
Q ss_pred H---hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 127 T---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 127 ~---~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
. ..+..+..+|..++.... .....-+.+.+...+.. .+...++.++++++.++.........-.-..+++.
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~----~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNV----IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence 0 223345556666663321 11223344445555543 56678899999999998654332111111123444
Q ss_pred HHHhhcC-----CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 202 LVELLDS-----EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 202 l~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..+... +.+.++..++|+++..+.--.... ..+. .+++.++..+.++++.|+..|++++.+++..
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4443321 233456578999998764111111 1221 3566788888888899999999999999975
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0033 Score=52.19 Aligned_cols=22 Identities=5% Similarity=-0.076 Sum_probs=15.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWA 93 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~ 93 (363)
.+.+..+++++++.|+..++..
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 3567777778888888777663
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.022 Score=52.33 Aligned_cols=214 Identities=14% Similarity=0.067 Sum_probs=135.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc-----C-------C-CCHHHHHHHHHHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-----S-------S-PHLNLAEQATWALG 95 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll-----~-------~-~~~~v~~~a~~~L~ 95 (363)
....|+.-|-++.|++|.-|+..|..+..............+. ...++++ + + .-.+||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4456666667899999999999999876433211100011111 3333333 1 1 12589999999999
Q ss_pred HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHH
Q psy10729 96 NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175 (363)
Q Consensus 96 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a 175 (363)
.+ .+-|.- ..++..|+..+.... =+++...+-.|.++..-- .. ..++++.+...|.+.|.+|+..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~DLL---~~---Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKEFV---ED---KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGGGC---CC---HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHHHH---HH---HHHHHHHHHhhcCCcccHHHHHH
Confidence 99 665542 233333433333333 477777788888882221 12 57789999999999999999999
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh--hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV 253 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~ 253 (363)
+.+|.-++ . +.....+ +..+-..|.+-+. .-.......|+.++..+... -.+...+|.|...+.+.-+
T Consensus 320 AetLiPIA-~-p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtIT 389 (800)
T 3oc3_A 320 AELLCHFP-I-TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVP 389 (800)
T ss_dssp HHHHTTSC-C-SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSH
T ss_pred HHHhhhhc-c-hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcH
Confidence 99999999 2 2222222 3444444443321 24456666777777644321 1123789999999999999
Q ss_pred hHHHHHHHHHHHHh
Q psy10729 254 NIVKEAAWTISNIT 267 (363)
Q Consensus 254 ~v~~~a~~~L~nl~ 267 (363)
.||..+..++..+.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888776
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.25 Score=42.39 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=119.9
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH--HHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhcc
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHT-TDVETLSDICWALSYISD 184 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~ 184 (363)
+...+.+..|+..|..-+ -+.++.+..++.++.+......... ....-...+..++.. +++++.-.+-..|..+..
T Consensus 74 i~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 344567777777776555 5889999999999988653322111 122212223333332 456677777777777776
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC---chHHHHHhhcCChHhHHHHHHH
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
... ....++..+.+..+.+.+..++-++...|..++..+..........++..+ +....-+++.+++.-+++.+..
T Consensus 153 ~e~-la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEP-LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHH-HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHH-HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 555 457778888899999999999999999999999999887776666666543 5667888899999999999999
Q ss_pred HHHHHhcC--CHHHHHHHHH
Q psy10729 262 TISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 262 ~L~nl~~~--~~~~~~~~~~ 279 (363)
.|+.+... +.....+.+.
T Consensus 232 LLgelLldr~N~~vM~~Yis 251 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYIS 251 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHhC
Confidence 99999876 4344344443
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.054 Score=44.60 Aligned_cols=140 Identities=13% Similarity=0.144 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hH-HHHHHH-------
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ------- 237 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~l~~------- 237 (363)
+......++.||..+....... ..+++ .+.+..++..+.++++.++..++..|+.+|.-+. .. ...+++
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~-~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGI-KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHH-HHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHH-HHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 3567788999999998666544 44444 4678999999999999999999999998887443 12 222221
Q ss_pred ---cCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHH
Q psy10729 238 ---AGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEA 313 (363)
Q Consensus 238 ---~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~ 313 (363)
..-...+++.+.+. +.+.+. ++..+.|....+++. +......+..+...|..+.+..
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~-~~m~lIN~li~~~~d------------------l~~R~~lR~ef~~~Gl~~il~~ 206 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEE------------------LDFRVHIRSELMRLGLHQVLQE 206 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCC------------------HHHHHHHHHHHHHTTHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHH-HHHHHHHHHHCCCCC------------------HHHHHHHHHHHHHCChHHHHHH
Confidence 22344555555533 333333 344444443332111 1112345678889999999999
Q ss_pred HhcCCcHHHHHHHH
Q psy10729 314 LQHHENETVYQKCY 327 (363)
Q Consensus 314 l~~~~~~~v~~~a~ 327 (363)
+....++++..+..
T Consensus 207 l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 207 LREIENEDMKVQLC 220 (233)
T ss_dssp HHHCCCHHHHHHHH
T ss_pred HhccCCHHHHHHHH
Confidence 98888888776544
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.074 Score=43.25 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=103.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH-hcCCCCHHHHHHHHHHHHHhhC-CCCchhHH
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAG-DGARARDL 107 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~ 107 (363)
++....+.+++..++|..|+..|+.. ...+ ..++.+.. +-.+++..|++.+..++..++. ..|+
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 34444444788889999999999888 3221 34666666 6667889999999999999984 4443
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
..++.+.....+++ ..+++.++..+.--+...... .....++|.+..+..+++.-|++...+.|..++..++
T Consensus 139 ----~~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ----TTHHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 14567777777776 689999887765434332111 1234567778888888889999999999999999988
Q ss_pred hhHHHHHh
Q psy10729 188 DKIQAVVD 195 (363)
Q Consensus 188 ~~~~~~~~ 195 (363)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0035 Score=57.38 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhh
Q psy10729 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121 (363)
Q Consensus 42 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 121 (363)
..||+.|+.+|+.+ .+-+.. ..++..++..+..+..+++..++-.|..+. +-... -.+.++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc
Confidence 46899999999999 554433 344555555557788999999999998881 11111 245677888888
Q ss_pred CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC-C-hhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 122 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT-D-VETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
.+.+ .+++..++.+|.-++ . + .....++..+...|.+- | ..........|+.++..+... -.....+
T Consensus 309 ~D~D-DDVRAVAAetLiPIA-~--p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LV 377 (800)
T 3oc3_A 309 SSPD-EDIKLLSAELLCHFP-I--T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERL 377 (800)
T ss_dssp TCSS-HHHHHHHHHHHTTSC-C--S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGG
T ss_pred CCcc-cHHHHHHHHHhhhhc-c--h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHH
Confidence 8777 499999999999888 2 1 23456677777777653 2 223445556666666444321 1123679
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
|.|.+++.++-++||.+++.++..+.
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.48 E-value=0.13 Score=52.48 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
-..++.++++++.++..-...........+++.+..+... +++-++..++++++.++..-....+. + ..+++.
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l-~~vl~~ 544 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVILK 544 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHH
Confidence 4678889999998885431100001133445555444332 23445557899999887432222121 1 145777
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH----------cCchHHHHHhhcCChHhHHHHHHHHHHHHhcC--
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ----------AGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-- 269 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-- 269 (363)
+++.+.++++.|+..|++++.+++...+. .+.. ..++..+..++...+.+-......+++.++..
T Consensus 545 ll~~l~~~~~~V~~~A~~al~~l~~~~~~---~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 545 LFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 88888888899999999999999874322 2220 12333344445544444455556666666543
Q ss_pred CHHHHHHHHH
Q psy10729 270 NSRQIDHVIQ 279 (363)
Q Consensus 270 ~~~~~~~~~~ 279 (363)
+.+.....+.
T Consensus 622 ~~~~~~~~~~ 631 (1049)
T 3m1i_C 622 SVAERNRLLS 631 (1049)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 2343444444
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.076 Score=47.21 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=99.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-----------CCChhHHHHHHHHHHHhcCCChHhHHHHHh-CCCh
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD-----------DENPNTQFEATWALTNIASGTSEQTMTVIN-ANAI 72 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-----------~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i 72 (363)
-+..|+..|...+...++.++ .+|+..|+..|. ..+...+..++.||..+. .+......++. ...+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHH
Confidence 456667667666555678887 677899999982 224578899999999999 45555555554 5789
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-ch-hHHHh----------hcCChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
..+...+.++.+.++..++..|.-+|.... .. ...+. +..-+..++..+......+....++..+..+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999996643 22 22322 2345777888887655567777777777777
Q ss_pred hcCC
Q psy10729 141 CRNK 144 (363)
Q Consensus 141 ~~~~ 144 (363)
....
T Consensus 245 i~~~ 248 (383)
T 3eg5_B 245 ITPA 248 (383)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6665
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.064 Score=44.14 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC----C-------CChhHHHHHHHHHHHhcCCChHhHHHHHh-CCChH
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIP 73 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~-------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~ 73 (363)
+..|+..|...+...++.+ ..+|+..|+.+|. . .+.+.+..++.||..+. .+......++. .+.+.
T Consensus 22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHH
T ss_pred HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHH
Confidence 4455555665554566777 5788888888882 1 14567889999999999 45555555554 57899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCC-ch-hHHHh----------hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
.+...+.++++.++..++..|..+|..+. .. ...+. +..-+.++++.+......+....++..+..+.
T Consensus 100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li 179 (233)
T 2f31_A 100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 179 (233)
T ss_dssp HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886543 22 22222 22345566776765554566666666666666
Q ss_pred cCC
Q psy10729 142 RNK 144 (363)
Q Consensus 142 ~~~ 144 (363)
...
T Consensus 180 ~~~ 182 (233)
T 2f31_A 180 TPA 182 (233)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.11 Score=42.66 Aligned_cols=97 Identities=9% Similarity=0.119 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC-----hhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHH
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~-----~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ 246 (363)
.+|+..+-.++.+++. ...++++.+.-.+.++|+..+ +-+|-.++++++.++.. +++....+++.+++|..++
T Consensus 74 cnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 4566666777776665 477888998888888886554 24899999999999974 5667788899999999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.++.++.--|.-|.+.+..+..++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HHhhccHHHHHHHHHHHHHHhccc
Confidence 999999989999999998887653
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.15 Score=41.41 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=100.6
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH-hhccCChhhHHHHHHHHHHhcc-CChhhHHH
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISD-GHNDKIQA 192 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~-ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~ 192 (363)
+....+..++. .+++-.++.+|..+ . . ....++.+.. +-..++-.|+..+..+++.++. ..++.
T Consensus 74 ~la~~L~~~~~-deVR~~Av~lLg~~-~-~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 74 KLAFLAYQSDV-YQVRMYAVFLFGYL-S-K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHTCSS-HHHHHHHHHHHHHT-T-T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHhCcc-hHHHHHHHHHHHhc-c-C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 33344445554 48898898888877 2 1 1457777777 5566778899999999999984 33321
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 193 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 193 ~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
.++.+..+..++++.+|..|...+.-.+.. +... .- -.-+++.+-.+..+++.-|++..+|.|..++..+|+
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k-~d-p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK-EN-PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT-TC-HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh-cC-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 467888999999999999998887543332 1110 00 012456666777788999999999999999999998
Q ss_pred HHHHHHH
Q psy10729 273 QIDHVIQ 279 (363)
Q Consensus 273 ~~~~~~~ 279 (363)
.+..+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8665554
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.34 Score=41.42 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChH----HHHHhcCC-CCHHHHHHHHHHHHHhhCCCCch
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIP----KFLQLLSS-PHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~----~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
+..+.+++ +=..+.+.-++.++.-.+. ++.....+.+...-. .+...+.+ ..+..+-.++++++|+... +..
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence 45566665 3233455567777776663 455555554433222 33344432 3456678899999999876 446
Q ss_pred hHHHhh--cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHH
Q psy10729 105 RDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSY 181 (363)
Q Consensus 105 ~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~ 181 (363)
++.+.. ..+++.+...+...+ ..++..++.++.|++..............+...+..+++. .|++....++-++++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~n-knl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSN-KNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCC-HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 666653 224444454444433 5788888888888875321112233344455556666654 688999999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcC
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDS 208 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~ 208 (363)
+...+....+.....|+-..+-+..+.
T Consensus 261 L~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 998766543433334544444444444
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.22 E-value=0.04 Score=55.68 Aligned_cols=139 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy10729 126 PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~ 200 (363)
+=..++.++|+++.++.+..+.........+++.|..++.+ +...++..++|+++.++..-....+. + ..++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L-~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-H-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-H-HHHHH
Confidence 35678889999999997653322233456777888887764 22335567889999887543221121 1 13466
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH------cCchHH----HHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ------AGGLQK----MKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 201 ~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~l~~----L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.+++.+.++++.++..||+++.++|.... +.+.. ...++. +......-+++-...+.-+++.++..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~---~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 67777777788999999999999987432 22321 112333 33334444566667788888888875
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.034 Score=56.05 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=124.4
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHH-HhCC----ChHHHHHhcC-----CCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTV-INAN----AIPKFLQLLS-----SPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i-~~~~----~i~~l~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
.++...+.++.+|+.++..-......+ -... .++.+..+++ .+++.++..++++++.++..-..
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------ 528 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ 528 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------
Confidence 468889999999999997643211111 0012 3344555544 56799999999999999854221
Q ss_pred hcCChHHHHHhhCC-----CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CCh----------
Q psy10729 110 GLGTMPQILALVQP-----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDV---------- 169 (363)
Q Consensus 110 ~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~---------- 169 (363)
....+++++..+-+ ..+..++..++.++.+++..-..... .....++..+..+|.. .+.
T Consensus 529 ~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~ 607 (980)
T 3ibv_A 529 ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSS 607 (980)
T ss_dssp CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHH
T ss_pred CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHhhcCcCCCCCcccccccchhhh
Confidence 12455666665543 22257999999999999986543221 1223455555555542 111
Q ss_pred ------hhHHHHHHHHHHhccC---ChhhHHHHHhcCChHHHHH----hhcCC----Chh-hHHHHHHHHHHhhcCChhH
Q psy10729 170 ------ETLSDICWALSYISDG---HNDKIQAVVDTGVVPRLVE----LLDSE----ETT-ILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 170 ------~v~~~al~~L~~l~~~---~~~~~~~~~~~g~l~~l~~----lL~~~----~~~-v~~~a~~~L~nl~~~~~~~ 231 (363)
+-+.....+++.+... +++.....++ .+++.++. .+... +.. -....+.++++++.+-+..
T Consensus 608 ~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 608 IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 1233455555555522 2322222222 22333333 33222 111 1235567778887653221
Q ss_pred ------HHHHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 232 ------TDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 232 ------~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
....+. .+.+.+...+. ..+..++..+..++..+...=...+
T Consensus 687 ~~~~~p~~~~f~-~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~ 736 (980)
T 3ibv_A 687 GSEEVAWLASFN-KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM 736 (980)
T ss_dssp C-CCCSHHHHHH-HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cCCCCcHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH
Confidence 111221 34555656665 4567899999999999887643333
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.47 Score=38.96 Aligned_cols=218 Identities=14% Similarity=0.179 Sum_probs=135.4
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHHHH-------hcCCCC-----HHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKFLQ-------LLSSPH-----LNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l~~-------ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+++-|+.|+.-|..--...++....+=.. |.+..+++ .+..+. ..=..+|+..|..++.+ |+.|..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 45568888888877664444443333333 44444432 222222 12335677777778876 778999
Q ss_pred HhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 108 LLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
+....+.-+|...|..... +.++-.++++++.+...+++. ..+....+++|.....++.++.-.+..|..++..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 9998888788888763332 467778888999999765432 13334578999999999999998888888888877
Q ss_pred ccCChh---------hHHHHHhcCChHHHH-HhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc-------CchHHHH
Q psy10729 183 SDGHND---------KIQAVVDTGVVPRLV-ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA-------GGLQKMK 245 (363)
Q Consensus 183 ~~~~~~---------~~~~~~~~g~l~~l~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------~~l~~L~ 245 (363)
..++.. +...+ ..++..++ .+.+++++++.+.++++-..++. ++..++.+.+. |.+.
T Consensus 173 L~dd~GL~YiC~t~eRF~av--~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~--- 246 (268)
T 2fv2_A 173 LLDDTGLAYICQTYERFSHV--AMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTTFA--- 246 (268)
T ss_dssp HHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---
T ss_pred hccchhHHHHHccHHHHHHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChHHH---
Confidence 654432 11111 11233333 34467788999999999999976 55555444431 2221
Q ss_pred HhhcCChHhHHHHHHHHHHHH
Q psy10729 246 KLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 246 ~~l~~~~~~v~~~a~~~L~nl 266 (363)
.++ .+|+.+++.-...+.|+
T Consensus 247 ~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 247 QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHH-hcCHHHHHHHHHHHHhc
Confidence 222 24566666555555544
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.12 Score=45.88 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=83.1
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hH-HHHHHH-------
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ------- 237 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~l~~------- 237 (363)
+......++.||..+....... ..+++ ...+..++..+.++.+.++..|+..|+.+|.-+. .. .+.+++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~-~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGI-KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHH-HHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhH-HHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 4567888999999998666544 44444 4678999999999999999999999999887442 21 233332
Q ss_pred ---cCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHH
Q psy10729 238 ---AGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEA 313 (363)
Q Consensus 238 ---~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~ 313 (363)
..-...++..+.+. +.+.+. ++..+.|....+++.. ......+..+...|..+.+..
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~li~~~~dl------------------~~R~~lR~ef~~~Gl~~il~~ 272 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEEL------------------DFRVHIRSELMRLGLHQVLQE 272 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCH------------------HHHHHHHHHHHHTTHHHHHHH
T ss_pred hCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHHHHcCCCCH------------------HHHHHHHHHHHHCChHHHHHH
Confidence 23456677777663 444444 4445555443321110 011233455556666666666
Q ss_pred HhcCCcHHHHH
Q psy10729 314 LQHHENETVYQ 324 (363)
Q Consensus 314 l~~~~~~~v~~ 324 (363)
+....++++..
T Consensus 273 lr~~~~~~L~~ 283 (383)
T 3eg5_B 273 LREIENEDMKV 283 (383)
T ss_dssp HTTSCCHHHHH
T ss_pred HhcCCChhHHH
Confidence 55555555443
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.44 Score=48.00 Aligned_cols=221 Identities=12% Similarity=0.078 Sum_probs=131.7
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC---CHHHHHHHHHHHHHhhCCCCch----hHHHhhcC
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---HLNLAEQATWALGNIAGDGARA----RDLLLGLG 112 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~nl~~~~~~~----~~~~~~~g 112 (363)
.+++.|..|-..|..+-.. + ++......++.++ ++.++..|+.+|.+....-+.. ....+...
T Consensus 20 sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 4788888888888887643 3 3445556666543 6889998998888776421111 22233334
Q ss_pred ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccC------
Q psy10729 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDG------ 185 (363)
Q Consensus 113 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~------ 185 (363)
.++.+.+.-....+.-++...+.++..+....-+. ...++++-++.++..+++ ......++++..+...
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 44444441111334578888888888888653221 224566667777765443 3444555666644311
Q ss_pred --Ch---hh----HHHHHhcC---ChHHHHHhhc----CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc
Q psy10729 186 --HN---DK----IQAVVDTG---VVPRLVELLD----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 186 --~~---~~----~~~~~~~g---~l~~l~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
.+ .+ .+.+.+.. +.+.+..+|. +.++.++..++.++.....--+ ...+++.++++.+...+.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTT
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcC
Confidence 00 01 11222211 1333444443 3677889999999998876322 345666788888888887
Q ss_pred CChHhHHHHHHHHHHHHhcC--CHHHHHHHH
Q psy10729 250 SSRVNIVKEAAWTISNITAG--NSRQIDHVI 278 (363)
Q Consensus 250 ~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~ 278 (363)
. ++++..|+-+|..+... .++....++
T Consensus 244 ~--~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 244 I--EELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp S--HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 5 68999999999998875 344433333
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.052 Score=46.63 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILT 215 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~ 215 (363)
|.++..++++..+-....+++..+...++.++.++.+..+..|-..+....-.... + ...+|.++..+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-L-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-C-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-c-cccchHHHHHhccCCCcceEE
Confidence 34455554444455566788899999999999999999999999988655422111 1 23477777777 466778999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-------hHhHHHHHHHHHHHH
Q psy10729 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-------RVNIVKEAAWTISNI 266 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~~v~~~a~~~L~nl 266 (363)
.....|+|++++.....+..+..|+++.|-+.+... +..-++.||..++|.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999998888888888999999999988432 233455566666553
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.33 Score=43.79 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
.+++.++.|+..+..+..+-|..+ ..++..++.++.+.+ ..++..+...|..+|.+ + ....+...|+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~-~------~i~kiaDvL~ 106 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDED-VSIRRQAIKELPQFATG-E------NLPRVADILT 106 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT-T------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh-h------hhhhHHHHHH
Confidence 358899999999999998888876 445789999999888 58999999999999987 2 1466778899
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
++|+.+++.-...+=.+|..+...++. +.+..+...+.++++.+|+.++..|..=
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 999998887666666666666654442 2244555555556778888888887643
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=95.39 E-value=0.54 Score=41.76 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hH-HHHHH---------
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVI--------- 236 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~l~--------- 236 (363)
+......++.||..+..........+-..+++..++..+.++++.++..++..|+.+|..+. .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 35677889999999987666543444445678999999999999999999999988887443 22 22222
Q ss_pred -HcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhc
Q psy10729 237 -QAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA 268 (363)
Q Consensus 237 -~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~ 268 (363)
+..-...++..+.+. +.+.+. ++..+.|...
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~-a~m~lIN~lv 183 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKV-GCLQLINALI 183 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHH-HHHHHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHH-HHHHHHHHHH
Confidence 123445566666543 344443 4445555443
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=95.31 E-value=0.42 Score=42.47 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=94.9
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC----C-------CChhHHHHHHHHHHHhcCCChHhHHHHHh-CCChH
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIP 73 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~-------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~ 73 (363)
+..|+..|...+-..++.+. .+|+..|+.+|. . .+.+.+..++.||..+.. +......++. .+++.
T Consensus 26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~ 103 (386)
T 2bnx_A 26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGIL 103 (386)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHH
T ss_pred HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHH
Confidence 45555556655545667775 577888888882 1 145678999999999994 4555555544 57899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCC-ch-hHHHh----------hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
.+...+.++.+.++..++..|..+|..+. .. ...+. +..-+..+++.+......+....++..+..+.
T Consensus 104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv 183 (386)
T 2bnx_A 104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 183 (386)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999988886543 22 22221 22356667777776665677777777777777
Q ss_pred cCC
Q psy10729 142 RNK 144 (363)
Q Consensus 142 ~~~ 144 (363)
...
T Consensus 184 ~~~ 186 (386)
T 2bnx_A 184 TPA 186 (386)
T ss_dssp TTC
T ss_pred CCC
Confidence 665
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.035 Score=46.00 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=16.2
Q ss_pred hHHHHHhcCCCCHHHHHHHHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATW 92 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~ 92 (363)
.+.+..++++++..|+..++.
T Consensus 124 ~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 124 LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 345667788888999988876
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.15 Score=43.57 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhC--CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINA--NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
..+..+..++++++|+-. ++..+..+... .+++.+...+.+++..++..++..+.|++...-..+..-.....+..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 456678999999999984 56677766642 345556666667788999999999999983210000000011244555
Q ss_pred HHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 118 LALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 118 ~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
..+++...+.+....++.+|+++...+
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 566665555788888888999998763
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.68 Score=39.09 Aligned_cols=148 Identities=12% Similarity=0.137 Sum_probs=86.5
Q ss_pred HHHHHHhhccC------ChhhHHHHHHHHHHhccCChhhHHHHH-hcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 157 LPLLNQLIHTT------DVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 157 i~~l~~ll~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~-~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
+..+..+++++ +.+-...++..|.-++..-....+.+- +..++..|+ +.....+.+++.|.++|+...++||
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 33444555554 455678888888888876665544432 334444444 3344566799999999999999999
Q ss_pred hHHHHHHHc--CchHHHHHhhcC-------ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy10729 230 HQTDCVIQA--GGLQKMKKLLSS-------SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMAL 300 (363)
Q Consensus 230 ~~~~~l~~~--~~l~~L~~~l~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 300 (363)
...+.+.+. .++..+..-|.. ...-+.+.-..+|.-+...+ .
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-----------------------------~ 153 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-----------------------------E 153 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-----------------------------T
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-----------------------------H
Confidence 888777764 233333322211 01112222222222222211 1
Q ss_pred HHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhcC
Q psy10729 301 LVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFN 335 (363)
Q Consensus 301 ~l~~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~ 335 (363)
.+ ...|++.|.++...+ .++++.++..++..+|.
T Consensus 154 ~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 154 DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 11 144667777665555 89999999999999885
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.76 Score=41.49 Aligned_cols=120 Identities=15% Similarity=0.030 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHH
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQIL 118 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 118 (363)
..+...+..|+..+...-.+-|+... .++..++.++.+.+..+|.+|+..|-.+|.+ ... ..+.+.|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i------~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL------PRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh------hhHHHHHH
Confidence 45688899999999999888888776 5678899999999999999999999999987 332 34568899
Q ss_pred HhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 119 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 119 ~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
++|+.+++ .-...+-++|..+...+ + .+.+..+...+..+++.++..++..|
T Consensus 107 QlLqtdd~-~E~~~V~~sL~sllk~D-p-------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 107 QLLQTDDS-AEFNLVNNALLSIFKMD-A-------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHTTCCCH-HHHHHHHHHHHHHHHHC-H-------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHhccch-HHHHHHHHHHHHHHhcC-h-------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 99997664 33444445555544432 1 22233333333334556666655555
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.34 E-value=5.7 Score=41.07 Aligned_cols=210 Identities=11% Similarity=0.031 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc--CCCCHHHHHHHHHHHHHhhCC-----CCchhHHHhhcC
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGD-----GARARDLLLGLG 112 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g 112 (363)
.+...+..|-..|..+-.. + .+...+...+ .+.+..+|..|+..|.+.... +++.+ ..++..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k-~~Ir~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK-VYLKNS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH-HHHHHH
Confidence 3666788888888776522 2 2334444433 355688999999999988632 12222 222333
Q ss_pred ChHHHHHhhCCC--CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC----
Q psy10729 113 TMPQILALVQPN--TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH---- 186 (363)
Q Consensus 113 ~i~~L~~ll~~~--~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~---- 186 (363)
++..+....... .+..++..++.++..++...-+. ...++++.++.+++. ++.....++.+|..++...
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 444443332111 34578888888999888764331 234677778887766 5556777888888876321
Q ss_pred ---hhhHH----HHHhc--CChHHHHHhhcC-------------------CChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 187 ---NDKIQ----AVVDT--GVVPRLVELLDS-------------------EETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 187 ---~~~~~----~~~~~--g~l~~l~~lL~~-------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
..+.. .+.+. .+++.+...+.+ .+..++..++.++.+...--+ ...+.+.
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~ 246 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAE 246 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhc
Confidence 11111 11111 122233333322 123466777777776654222 2233443
Q ss_pred C--chHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 239 G--GLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 239 ~--~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
. .++.+...+. +++++..|+.+|..++..
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence 2 6666776665 467899999999999975
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=93.15 E-value=1.9 Score=43.67 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC---C--hhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---D--VETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~---~--~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
-.....++|+++.++..-.+..+......+++.|..+.++. + .-++...+++++..++.-....+. + ..++..
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~-L-~~vl~~ 570 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF-L-KTVVNK 570 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH-H-HHHHHH
Confidence 46778889999999854321112233456666666666554 2 235566778888887442222121 1 134677
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
+++.+.++++.++..||.++..++....
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999987443
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=91.52 E-value=7.6 Score=34.97 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=123.2
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCC
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGD 100 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~ 100 (363)
...++...+..|+++++++|+..|...-.+|..+-..-...|..+... +-..+.+++... ...-....+.+++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 445566778889999999999999999999888765544555544421 223445554321 111123455666666543
Q ss_pred CC----chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---CChhhHH
Q psy10729 101 GA----RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLS 173 (363)
Q Consensus 101 ~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~ 173 (363)
-. +-...+. ...|+.+.....-.........|+......+ +. -..+.+..++++ .++.=..
T Consensus 235 fa~PLKeehk~fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-------L~~~vi~~LLk~WP~tns~Kev 302 (449)
T 2npp_B 235 FALPLKEEHKIFL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-------LTEPVVMALLKYWPKTHSPKEV 302 (449)
T ss_dssp CCSSCCHHHHHHH----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GG-------GHHHHHHHHHHTCCSSCHHHHH
T ss_pred cCCCCcHHHHHHH----HHHHHHHHccchhHHhHHHHHHHHHHHHhcC-cH-------hHHHHHHHHHHhCCCCCchHHH
Confidence 21 1112222 2333333333222233445556665555433 11 111223334444 3333223
Q ss_pred HHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc--CchHHHHHhhc-
Q psy10729 174 DICWALSYISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKMKKLLS- 249 (363)
Q Consensus 174 ~al~~L~~l~~~~-~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~l~~L~~~l~- 249 (363)
.-+.-+..+...- +..... +...++..+.+.+++++..|.+.|+.... ++.....+.++ .++|.+...+.
T Consensus 303 lFL~eleeile~~~~~ef~~-i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 303 MFLNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHHHHHhchhhhHHhhHHHHHH
Confidence 3334444444322 222222 22345777788888888888888874433 33333222221 25566666552
Q ss_pred ----CChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 250 ----SSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 250 ----~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+-+..++..|..++.-+...++....
T Consensus 377 ~s~~HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 377 NSKTHWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp CTTCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 23678999999999888777765433
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.43 E-value=7.3 Score=40.24 Aligned_cols=227 Identities=7% Similarity=0.009 Sum_probs=129.8
Q ss_pred CCHHHHHHhc--CCCChhHHHHHHHHHHHhcCC-----ChHhHHHHHhCCChHHHHHhcCC---CCHHHHHHHHHHHHHh
Q psy10729 28 GVVPICVELL--DDENPNTQFEATWALTNIASG-----TSEQTMTVINANAIPKFLQLLSS---PHLNLAEQATWALGNI 97 (363)
Q Consensus 28 g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~i~~~~~i~~l~~ll~~---~~~~v~~~a~~~L~nl 97 (363)
+....+...| .+.+..+|..|+.+|.+.... .++.+..+. ..+++.+...... .+..++...+.++..+
T Consensus 45 ~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~I 123 (1204)
T 3a6p_A 45 PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEM 123 (1204)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 4666666555 456788999999999987532 334444333 3445554443221 4578888899999998
Q ss_pred hCCC-CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcC---CCCCCCHHHH-----------HhHHHHHHH
Q psy10729 98 AGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN---KNPAPDFEKI-----------KICLPLLNQ 162 (363)
Q Consensus 98 ~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~---~~~~~~~~~~-----------~~~i~~l~~ 162 (363)
+... |.. ..+.++.++.++..+ ......++.+|..++.. .+.. ..... ..+++.+..
T Consensus 124 a~~d~p~~-----Wp~ll~~L~~~~~~~--~~~~e~~L~iL~~L~Eev~~~~~~-~~~r~~~l~~~l~~~~~~I~~~~~~ 195 (1204)
T 3a6p_A 124 IKREWPQH-----WPDMLIELDTLSKQG--ETQTELVMFILLRLAEDVVTFQTL-PPQRRRDIQQTLTQNMERIFSFLLN 195 (1204)
T ss_dssp HHHHSTTT-----CTTHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHTSCCS-CHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhCccc-----chHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHccccch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8442 211 245678888877653 35567778888887653 1111 11111 133444444
Q ss_pred hhcc-------------------CChhhHHHHHHHHHHhccCChhhHHHHHhcC--ChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 163 LIHT-------------------TDVETLSDICWALSYISDGHNDKIQAVVDTG--VVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 163 ll~~-------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g--~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
++.. .+..+...++.++.+....-+. ..+.+.. +++.+..++. +++++..|+.+|
T Consensus 196 iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL 271 (1204)
T 3a6p_A 196 TLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECL 271 (1204)
T ss_dssp HHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHH
Confidence 4432 2345677788888877655442 2334432 6777776665 567999999999
Q ss_pred HHhhcCC--hhHHHHHHHc---CchHHHHHhhc--------CChHhHHHHHHHHHHHHh
Q psy10729 222 GNIATGN--DHQTDCVIQA---GGLQKMKKLLS--------SSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 222 ~nl~~~~--~~~~~~l~~~---~~l~~L~~~l~--------~~~~~v~~~a~~~L~nl~ 267 (363)
..++... +.....++.. ..+..++.... +.+.++.+..+..+..+.
T Consensus 272 ~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 272 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp HHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 9998744 2222222221 11223444331 124566666666666665
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=9 Score=33.76 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=28.1
Q ss_pred cCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 196 TGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 196 ~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
.+++..|+.++.++ ++.....++.+|+.++...+.....++.
T Consensus 224 ~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~ 267 (386)
T 3o2t_A 224 KAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQ 267 (386)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 35677888888754 3345566788888888877766555543
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=90.31 E-value=17 Score=36.91 Aligned_cols=220 Identities=12% Similarity=0.102 Sum_probs=133.0
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCC----Cc
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDG----AR 103 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~----~~ 103 (363)
.+..++..+.+++++.+..|-..|..+-. ++ ++...+..++. +.++.++..|+.+|.+..... +.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 45566666666677788888888887763 34 33444444554 457899999999999987431 11
Q ss_pred hhHHHhhcCChHHHHHhhCCC----CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 104 ARDLLLGLGTMPQILALVQPN----TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~----~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
.....++...+..+.+....+ .+..++...+.+++.++...-+. ....+++-++..+.. ++......+.+|
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 122233344455555543322 22456777888888888654222 123456666666643 344556677777
Q ss_pred HHhccC---C------hhh----HHHHHhcCChHHHHHhh-----cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 180 SYISDG---H------NDK----IQAVVDTGVVPRLVELL-----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 180 ~~l~~~---~------~~~----~~~~~~~g~l~~l~~lL-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
..+... . ..+ .+.+.+ . ++.++.++ ...++.+...++.++...+.=-+ ...+++.+++
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll 249 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCN-E-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHH
Confidence 776633 1 011 112222 1 55555544 23567788888888888876322 3467788888
Q ss_pred HHH-HHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 242 QKM-KKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 242 ~~L-~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+.+ ...+. +++++..|+-+|..+...
T Consensus 250 ~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 250 STLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 887 46664 568999999999998864
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=89.73 E-value=3.1 Score=42.34 Aligned_cols=166 Identities=12% Similarity=0.121 Sum_probs=102.3
Q ss_pred CHHHHHHhcCC----CChhHHHHHHHHHHHhcCC----ChHhHHHHHhCCChHHHHHh----cCCCCHHHHHHHHHHHHH
Q psy10729 29 VVPICVELLDD----ENPNTQFEATWALTNIASG----TSEQTMTVINANAIPKFLQL----LSSPHLNLAEQATWALGN 96 (363)
Q Consensus 29 ~l~~L~~lL~~----~~~~i~~~a~~~L~~l~~~----~~~~~~~i~~~~~i~~l~~l----l~~~~~~v~~~a~~~L~n 96 (363)
.+..+..++.+ .++.++..++.+++.+... ++.+ ....++.+... +...+.+-+..++.+|+|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 34445555543 3456666677777666521 1111 11224444443 445667777889999999
Q ss_pred hhCCCCchhHHHhhcCChHHHHHhhCC------CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh--ccCC
Q psy10729 97 IAGDGARARDLLLGLGTMPQILALVQP------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTD 168 (363)
Q Consensus 97 l~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll--~~~~ 168 (363)
+.. |. .++.+..++.. ..+..++..|+|+|..+.... ...+-+.+..+. ...+
T Consensus 467 ~g~--p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--------p~~v~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 467 AGQ--PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--------PRKVQEIVLPIFLNVAIK 527 (1056)
T ss_dssp HTC--GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--------HHHHHHHHHHHHHCTTSC
T ss_pred cCC--hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--------hHHHHHHHHHHhcCCCCC
Confidence 974 22 35666666642 223568888999999998643 123445666776 3477
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCC
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGN 228 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~ 228 (363)
+++|..|+..|.... ++. . .+..+...+.. ++..|...+...|.+++...
T Consensus 528 ~EvRiaA~~~Lm~t~--P~~--~------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 528 SELRIRSCIVFFESK--PSV--A------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHHTC--CCH--H------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHC--cCH--H------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 899998888885432 221 1 15566666654 57789999999999988754
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=87.46 E-value=8.5 Score=39.14 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=80.1
Q ss_pred hHHHHHhhCCC---CcHhHHHHHHHHHHHh----hcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 114 MPQILALVQPN---TPTTFLRNIVWAISNL----CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 114 i~~L~~ll~~~---~~~~~~~~~~~~L~~l----~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
+..+..++..+ .+..++..+.-+++.| |........ .....+...+.+.+...+.+-+..++.+|+|+-...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~ 471 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN 471 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh
Confidence 34555666532 2234555555555444 444322221 223455666666777778888899999999997521
Q ss_pred hhhHHHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc--CChHhHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVK 257 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~--~~~~~v~~ 257 (363)
.++.+.+++.. ....++..|+++|..++...+... -+.++++.. ..++++|.
T Consensus 472 -----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 472 -----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp -----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHH
T ss_pred -----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHH
Confidence 25566666632 134688999999999986555433 244666663 34678888
Q ss_pred HHHHHHHH
Q psy10729 258 EAAWTISN 265 (363)
Q Consensus 258 ~a~~~L~n 265 (363)
.|+..|..
T Consensus 533 aA~~~Lm~ 540 (1056)
T 1lsh_A 533 RSCIVFFE 540 (1056)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777754
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.03 E-value=13 Score=30.62 Aligned_cols=183 Identities=12% Similarity=0.149 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHhcCC-ChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhh
Q psy10729 43 NTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 121 (363)
+.+...+.-...++.+ ++..-. ++++.++.+..+++.++++..+..+...+...++. ....++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4555555555554433 333222 44555666555566667777777766666333222 133455666666
Q ss_pred CCCCcHhHHHHHHHHH--------HHhhcCCCCC----CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc----cC
Q psy10729 122 QPNTPTTFLRNIVWAI--------SNLCRNKNPA----PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS----DG 185 (363)
Q Consensus 122 ~~~~~~~~~~~~~~~L--------~~l~~~~~~~----~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~----~~ 185 (363)
++.+ ..+.+.+..+. ..++.+++.. ........+-..+..+.++.+..++..++..+-.+. ..
T Consensus 100 ~d~d-~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~ 178 (257)
T 3gs3_A 100 RDNS-AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFA 178 (257)
T ss_dssp TCSC-HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCC
Confidence 6444 35555554433 2344433111 111222344455666666777777777776665543 11
Q ss_pred Chh-------------------h-HHHH--HhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 186 HND-------------------K-IQAV--VDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 186 ~~~-------------------~-~~~~--~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
++. . ...+ -..+.+..|+.++.++ +......++..|+.+++..|.....++
T Consensus 179 ~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl 253 (257)
T 3gs3_A 179 DEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVV 253 (257)
T ss_dssp CTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred CcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 000 0 0111 1124566666666544 223455666677777665555444333
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=84.05 E-value=22 Score=31.44 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=114.5
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-----HHHHHHHHHHHHHhh
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIA 98 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-----~~v~~~a~~~L~nl~ 98 (363)
.++...+..|+.+++|+|+..|...-.+|..+-..-...|..+.. .+-..+.+++.... .++.+-....+..++
T Consensus 125 ~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 125 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp TSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred hcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 344455777888899999999999999999887665656655542 22234455443211 233333333333333
Q ss_pred CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---CChhhHHHH
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDI 175 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~~a 175 (363)
.--.+-...+.. ..|+.+-....-.........|+......+ +. -..+.+..++++ .++.=...-
T Consensus 204 ~PLkeehk~fl~----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~-------L~~~vi~~LLk~WP~tns~KevlF 271 (403)
T 3fga_B 204 LPLKEEHKIFLL----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-------LTEPVVMALLKYWPKTHSPKEVMF 271 (403)
T ss_dssp SSCCHHHHHHHH----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-GG-------GHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred CCchHHHHHHHH----HHHHHHHcCCcchhhHHHHHHHHHHHHHhC-ch-------hHHHHHHHHHHhCCCCCcHHHHHH
Confidence 211112222221 233333333222233455566665555443 11 112223334443 333323333
Q ss_pred HHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc--CchHHHHHhh----
Q psy10729 176 CWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKMKKLL---- 248 (363)
Q Consensus 176 l~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~l~~L~~~l---- 248 (363)
+.-+..+...-+ ..... +...++..+.+.+.+++..|.+.|+.... ++.....+.++ .++|.+...+
T Consensus 272 L~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 272 LNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444443322 22222 22345777788888888888888775432 33333222221 2445544444
Q ss_pred c-CChHhHHHHHHHHHHHHhcCC
Q psy10729 249 S-SSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 249 ~-~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+ +-+..++..+..++.-+...+
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHccCHHHHHHHHHHHHHHHHhC
Confidence 2 237888888888887776543
|
| >1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A | Back alignment and structure |
|---|
Probab=82.53 E-value=3.9 Score=30.21 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=51.9
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHc-CcHHHHHHHh---
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEES-GGLEKLEALQ--- 315 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~-~~~~~L~~l~--- 315 (363)
+++.|.+-+++.++.++..|..+|-.++.+..+.. ...+++. ..++.+..+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f------------------------~~~~r~~~~~Ik~l~~F~g~~ 105 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF------------------------RREMQRNSVAVRNLFHYKGHP 105 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH------------------------HHHHHHTTHHHHTTTTCCCCC
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH------------------------HHHHHHhHHHHHHHHhcCCCC
Confidence 55668999999989999999999999997643321 1122221 2222233222
Q ss_pred -----cCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 316 -----HHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 316 -----~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
......||+.|..++.-+|.++....
T Consensus 106 dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 106 DPLKGDALNKAVRETAHETISAIFSEENGSG 136 (140)
T ss_dssp CTTTSSCHHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred CcccccchhHHHHHHHHHHHHHHhCcCCCCC
Confidence 23347899999999999998876543
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=80.60 E-value=2.9 Score=31.03 Aligned_cols=69 Identities=9% Similarity=0.114 Sum_probs=52.1
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
+..+.+-|.+.++.++..|+..|-.++.+... ....+.+..++..|..++...++.|+..+...+..++
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 66777888889999999999888888775433 3334555567777888887778888888887777765
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=80.25 E-value=8.7 Score=29.26 Aligned_cols=69 Identities=6% Similarity=0.076 Sum_probs=52.7
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~ 267 (363)
+..+.+-|.+.++.++..|+..|-.++.+. +.....+....++..|+.++.. .++.|+..+...+..++
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 567788888999999999999999888854 4344456566788888888865 46788888777776665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 363 | ||||
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-47 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 1e-12 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 4e-08 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-39 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-12 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 7e-04 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-28 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-10 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-08 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-07 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 7e-18 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 2e-04 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-11 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-07 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 5e-07 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 2e-06 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-05 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.003 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.004 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 166 bits (419), Expect = 2e-47
Identities = 154/382 (40%), Positives = 205/382 (53%), Gaps = 22/382 (5%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVEL-LDDENPNTQFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE +++ Q EA WALTNIASGTS
Sbjct: 93 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 152
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+AGD RD +L M IL L
Sbjct: 153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 212
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 213 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 271
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 272 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 331
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDN---------------- 284
L ++ LLSS + NI KEA WTISNITAGN+ QI VI L
Sbjct: 332 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 391
Query: 285 ----LLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 340
+ + + + + G ++ L L + + + + +
Sbjct: 392 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 451
Query: 341 SIENGDTIEFNPQPVNTVNGFN 362
G I N + G
Sbjct: 452 KEARGLNINENADFIEKAGGME 473
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 1e-12
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 150 FEKIKICLPLLNQLIHTTDVET-LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208
+ +++ LP + Q +++ D++ LS +S H I V+ GVVPRLVE +
Sbjct: 71 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130
Query: 209 EET-TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267
+ + A + NIA+G QT V+ A + +LL + V + ++A W + N+
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 190
Query: 268 AGNSRQIDHVIQ 279
++ D+V+Q
Sbjct: 191 GDSTDYRDYVLQ 202
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.4 bits (124), Expect = 4e-08
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+ A + +I AGV+P LL N + EA W ++NI +G +
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 362
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL---GTMPQI 117
EQ VI+AN IP ++LL ++A WA+ N + G + D++ L G + +
Sbjct: 363 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 422
Query: 118 LALVQPNTPTTFLRNIVWAISNLCR 142
L++ + + A+ N+ +
Sbjct: 423 CDLLEIADNRI-IEVTLDALENILK 446
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 142 bits (357), Expect = 4e-39
Identities = 157/355 (44%), Positives = 215/355 (60%), Gaps = 25/355 (7%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L + QFE+ WALTNIASGT
Sbjct: 29 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 88
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNIAGDG+ RDL++ G + +LA
Sbjct: 89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 148
Query: 120 LVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 208
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 268
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI----------------- 278
I AG L LL++ + NI KEA WT+SNITAG QI V+
Sbjct: 269 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 328
Query: 279 --QEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
Q+ + G + Q+ LV G +E L L ++ + Q IS
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAIS 382
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.2 bits (157), Expect = 3e-12
Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 2/178 (1%)
Query: 156 CLPLLNQLIHTTDVETLSDICWAL-SYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTI 213
+ + + I++ ++E+ A +S I ++ G++P+ V L ++ + I
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 214 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273
+ + NIA+G QT V+ G + LL+S +I ++A W + NI S
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 274 IDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
D VI+ G + L L V +L+ +A + ++ +I+
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 1e-09
Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 6/217 (2%)
Query: 71 AIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTF 129
++ ++ ++S +L QAT A + + D ++ G +P+ ++ + +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 130 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189
WA++N+ + +P L+ + WAL I+ +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 190 IQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
V+ G + L+ LL + L T+ N+ + L +
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 245 KKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281
+LL + ++ ++ W IS +T G + +I+ V+++G
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 230
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA---- 56
+ A + S I L+ G++ + LL ++ A++NI
Sbjct: 330 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 389
Query: 57 --SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 94
T + ++ + + K L + ++ + + +
Sbjct: 390 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 2e-28
Identities = 32/285 (11%), Positives = 72/285 (25%), Gaps = 28/285 (9%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P V+ L ++ Q + + + V I K + LL SP+ N+ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 90 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149
A AL N+ + + + ++L++ + + + NL +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 150 F--------------EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195
C N D E + L +S +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 196 TGVVPRLVELLDSEETTIL--------------TAALRTVGNIATGNDHQTDCVIQAGGL 241
+G++ L+ + + + R + T A
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 242 QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286
+ S+ ++ N + +
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (179), Expect = 5e-15
Identities = 33/296 (11%), Positives = 77/296 (26%), Gaps = 28/296 (9%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
+ ++ + G + V+LL N N Q A AL N+ ++ + N I
Sbjct: 29 TCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGI 88
Query: 73 PKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLG-------------LGTMPQIL 118
+ + LL + + +Q T L N++ +L+ G
Sbjct: 89 REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNS 148
Query: 119 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178
+ + N + NL + L + + D
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208
Query: 179 LSYISDGHNDK--------------IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224
+ + HN + ++ ++
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268
Query: 225 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 280
N + + + ++ L+ S+ + EA + + + +
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 1e-10
Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 13/218 (5%)
Query: 54 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT 113
+ + + NA S+ + + L
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTD 168
+ L L+ + L A+ NL +K I LP + +L+ + +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET------TILTAALRTVG 222
+ + LS +S + + V+ V P + LL S IL++A TV
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402
Query: 223 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
N+ + L + L SS EAA
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 42/337 (12%), Positives = 92/337 (27%), Gaps = 53/337 (15%)
Query: 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS----- 81
+ +P F AT L N++S + + + I + + +
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201
Query: 82 -PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF--------LRN 132
E L N++ A + ++ F N
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192
+ N + LN + + TL AL ++
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 193 -----VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247
+ +P++ LL S + ++ + + N++ V+ ++ +L
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRL 379
Query: 248 LSSSRVN------IVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALL 301
L+S N I+ A +T+ N+ A Q+A
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQP-------------------------QLAKQ 414
Query: 302 VEESGGLEKLEAL-QHHENETVYQKCYKIISMAFNDS 337
S L + L + + + ++S ++
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 3e-07
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 8/129 (6%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
++ +P LL N + L+N++ V+ P+ +LL+S
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383
Query: 83 HLN------LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
N + A + + N+ + + I+ L + +
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
Query: 137 ISNLCRNKN 145
+S++ +K
Sbjct: 444 LSDMWSSKE 452
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.1 bits (196), Expect = 7e-18
Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 7/237 (2%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL-QLL 79
++ + P E + + A L ++ + + + + + L
Sbjct: 10 CLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYL 68
Query: 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139
+ L +A +G + + A ++ +LGLG + ++L L+ + T ++AIS
Sbjct: 69 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 128
Query: 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199
L R + +L + + + + L + GH + + G+V
Sbjct: 129 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188
Query: 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG-----GLQKMKKLLSSS 251
+LV L+ +E + L + ++ T + L+ +LL
Sbjct: 189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 5/137 (3%)
Query: 10 RKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA 69
L +E+ + + + + + + + + ++ + L N+ G E T+ +
Sbjct: 126 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185
Query: 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA----RARDLLLGL-GTMPQILALVQPN 124
+ + + L+ + H E AL ++ D R+ LGL + L+Q +
Sbjct: 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245
Query: 125 TPTTFLRNIVWAISNLC 141
+ C
Sbjct: 246 EEYQEELEFCEKLLQTC 262
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 1e-13
Identities = 38/256 (14%), Positives = 103/256 (40%), Gaps = 3/256 (1%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
D + +P +LL+DE+ +A + ++ + + + + + ++ + +
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 82 P-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140
+ A L N++ + G +P ++ ++ + L + + NL
Sbjct: 71 TNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHNL 128
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200
++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +G
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188
Query: 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
LV ++ + L V + + +++AGG+Q + L+ +V+
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248
Query: 261 WTISNITAGNSRQIDH 276
WT+ N++ ++Q
Sbjct: 249 WTLRNLSDAATKQEGM 264
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.6 bits (163), Expect = 5e-13
Identities = 34/230 (14%), Positives = 80/230 (34%), Gaps = 4/230 (1%)
Query: 51 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110
A+ N+ + Q + AIP+ +LL+ + +A + ++ A ++
Sbjct: 1 AVVNL---INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170
+ I+ +Q R + NL ++ K +P L +++ +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSPVDS 116
Query: 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230
L L + AV G + ++V LL+ L + +A GN
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 280
++ +GG Q + ++ + + + + + S +++
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 8e-13
Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 23/208 (11%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
+ + +P+ V+LL + +AT L + + AIP+ +Q
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404
Query: 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 137
LL H + + + V+ + A+
Sbjct: 405 LLVRAHQDTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGAL 443
Query: 138 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG 197
L R+ + + +PL QL+++ L ++ + +A+ G
Sbjct: 444 HILARDVHNRIVIRGLN-TIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG 501
Query: 198 VVPRLVELLDSEETTILTAALRTVGNIA 225
L ELL S + T A + ++
Sbjct: 502 ATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (153), Expect = 1e-11
Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 6/275 (2%)
Query: 16 ERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF 75
+ + ++G +P V++L + F A L N+ M V A + K
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148
Query: 76 LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 135
+ LL+ ++ T L +A ++ ++L G ++ +++ T L
Sbjct: 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 208
Query: 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195
+ L + P + L L + + W L +SD +
Sbjct: 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV-QNCLWTLRNLSDAATKQEGM--- 264
Query: 196 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL--SSSRV 253
G++ LV+LL S++ ++T A + N+ N V Q GG++ + + + + R
Sbjct: 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 254 NIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEI 288
+I + A + ++T+ + L L +
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 1e-09
Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 6/276 (2%)
Query: 24 LIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
+ +V V + + + T L N++ E + + + IP +++L SP
Sbjct: 55 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSP 113
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
++ A L N+ A+ + G + +++AL+ + L
Sbjct: 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL-AITTDCLQILAY 172
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
+ L ++ T E L + + + A+V+ G + L
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 232
Query: 203 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262
L ++ L T+ N++ D T G L + +LL S +N+V AA
Sbjct: 233 GLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289
Query: 263 ISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQM 298
+SN+T N + V Q G L + +
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (132), Expect = 4e-09
Identities = 41/275 (14%), Positives = 87/275 (31%), Gaps = 28/275 (10%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
+ G++ V+LL ++ N A L+N+ + M V I ++
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Query: 78 LLSSPHLN-----LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
+ A A L + + A++ + +P ++ L+ P + ++
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---------------------VET 171
V I NL + L+ L+ E
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231
+ AL ++ +++ + +P V+LL S I A + +A +
Sbjct: 436 VEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494
Query: 232 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266
+ + G + +LL S + AA + +
Sbjct: 495 -EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 4e-08
Identities = 52/357 (14%), Positives = 108/357 (30%), Gaps = 56/357 (15%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+++ T S + ++EAG + L D + W L N++ +
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
+Q + +QLL S +N+ A L N+ + + + ++ +G + ++
Sbjct: 260 KQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC----LPLLNQLIHTTDVETLSDIC 176
V + +++ + + + LP++ +L+H L
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
Query: 177 WALSYISDGHNDKIQAVVDTGVVPRLVELLDS----------------------EETTIL 214
L + + G +PRLV+LL I+
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 215 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274
+ +A ++ + + +LL S NI + AA + +
Sbjct: 437 EGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD----- 490
Query: 275 DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
+ A +E G L L H NE V ++
Sbjct: 491 ---------------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (111), Expect = 1e-06
Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246
N + A + T +P L +LL+ E+ ++ A V ++ + + + + +
Sbjct: 7 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66
Query: 247 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291
+ ++ V + A T+ N++ + + + + G L L
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG 111
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 38/345 (11%), Positives = 106/345 (30%), Gaps = 17/345 (4%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
R +AT L K+ +D+ E VV + ++LL+D+N Q A L + S
Sbjct: 19 FRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 77
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT-----MP 115
E + I + + S L + ++ L + G+ A
Sbjct: 78 EYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133
Query: 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
++ + + + + ++++ L L + + +
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSR-QGGLLVNFHPSILTCLLPQLTSPRLAVRKRT 192
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVE-LLDSEETTILTAALRTVGNIATGNDHQTDC 234
AL ++ + + ++ L+ L ++ + ++ + I+ H+
Sbjct: 193 IIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 248
Query: 235 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
++ + + K + + + + +++ + ++ L+
Sbjct: 249 YLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 295 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE 339
N +E+ ++ Y + +A+
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 352
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.001
Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 29/212 (13%)
Query: 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 97
+ + A +L + L+ SSP + A++ALG+I
Sbjct: 825 SRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSI 880
Query: 98 A-------------GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144
+ ++ + L L ++ +I++ ++ NI + C
Sbjct: 881 SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECA 940
Query: 145 NP------APDFEKI-----KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193
A K+ + LP L + + S + A+ + H I +
Sbjct: 941 EEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL 1000
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
+ + ++ L+ + + AL T + A
Sbjct: 1001 L-KNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 37/291 (12%), Positives = 82/291 (28%), Gaps = 22/291 (7%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+++ AT + L + E ++ + E + + A L I S
Sbjct: 189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
+ T + ++ + S +A Q N+ + +
Sbjct: 249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 308
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
L+ +V ++ D + + C A
Sbjct: 309 TSKFYAKGALQYLVPILTQTLTK--------------------QDENDDDDDWNPCKAAG 348
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
+ + V+P + E + + + AA+ G I G + +
Sbjct: 349 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 408
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291
+ + +L+ V + AAWT+ I + L LL+ ++
Sbjct: 409 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN--DVYLAPLLQCLIE 457
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.003
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
++ ++P + + D N +F +L I T + + P +L
Sbjct: 513 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQD 569
Query: 82 PHLNLAEQATWALGNIA 98
+++ A AL ++
Sbjct: 570 QDVDVKYFAQEALTVLS 586
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+ + ++ + + + D+ P + + L ++ + I + +P L+
Sbjct: 658 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLN 716
Query: 81 SPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAIS 138
+++ ATWA+G I+ G + + + + Q++ ++ PNTP T L N I
Sbjct: 717 PEFISVCNNATWAIGEISIQMGIEMQPYIPMV--LHQLVEIINRPNTPKTLLENTAITIG 774
Query: 139 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
L P P+L Q I C +L I D
Sbjct: 775 RLGY-VCPQ-------EVAPMLQQFIRP--------WCTSLRNIRD 804
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.96 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.95 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.88 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.85 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.38 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.34 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.33 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.24 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.12 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.03 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.02 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.91 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.9 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.86 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.79 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.69 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.63 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.57 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.53 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.52 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.38 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.35 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 96.98 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.91 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.37 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 95.84 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.76 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 95.69 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 94.92 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 93.79 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.23 | |
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 84.69 | |
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 84.23 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 80.39 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-39 Score=302.01 Aligned_cols=337 Identities=49% Similarity=0.789 Sum_probs=303.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|+.|+..++++++...+++++.+++.|++|.|++++. +.++.++..|+++|++++.+++.....+.+.|+++.++.++.
T Consensus 93 ~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~ 172 (503)
T d1wa5b_ 93 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 172 (503)
T ss_dssp HHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc
Confidence 6789999999999888899999999999999999995 567889999999999999888888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
+++.+++..++|+|+|++.+++..+..+...|++++++.++.+.+ ..++..++|++.+++.+..+........+++|.+
T Consensus 173 s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l 251 (503)
T d1wa5b_ 173 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 251 (503)
T ss_dssp HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH
T ss_pred CCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC-HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 999999999999999999998899999999999999999998777 4899999999999999877777888889999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
..++.+.|++++..+++++.+++...++....+++.|+++.++.++.++++.++..|+.++++++.+++.....+++.|+
T Consensus 252 ~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~ 331 (503)
T d1wa5b_ 252 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 331 (503)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccch
Confidence 99999999999999999999999988888888999999999999999999999999999999999988888889999999
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------------------------
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ----------------------------------------- 279 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----------------------------------------- 279 (363)
++.+..+++++++.+++.++|+|+|++.+++.++..+++
T Consensus 332 l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 411 (503)
T d1wa5b_ 332 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 411 (503)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999999999999999999999988877766665
Q ss_pred ---------------------------HHHHHHHHHHHhcc-----cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy10729 280 ---------------------------EGLDNLLEIALQVG-----ELNQMALLVEESGGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 280 ---------------------------~~l~~ll~~~~~~~-----~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
+++..+++.+.... ..+.+...+.++||++.|+.|+++++++|++.|.
T Consensus 412 ~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~ 491 (503)
T d1wa5b_ 412 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 491 (503)
T ss_dssp HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHH
T ss_pred HHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 22333333332211 2356777899999999999999999999999999
Q ss_pred HHHHhhcCCCcc
Q psy10729 328 KIISMAFNDSAE 339 (363)
Q Consensus 328 ~~l~~~~~~~~~ 339 (363)
++|++||++++|
T Consensus 492 ~il~~~f~~~~~ 503 (503)
T d1wa5b_ 492 KIIETYFGEEED 503 (503)
T ss_dssp HHHHHHSSSCC-
T ss_pred HHHHHHcCCcCC
Confidence 999999988875
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-37 Score=282.81 Aligned_cols=334 Identities=50% Similarity=0.877 Sum_probs=298.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|++|+.+++++++...++.++.+++.|++|.|+++|+ +++++++..|+++|.+++..+++.+..+++.|++|.++.++.
T Consensus 30 ~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~ 109 (434)
T d1q1sc_ 30 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 109 (434)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccc
Confidence 7889999999999888888899999999999999995 556789999999999999888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKIC 156 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 156 (363)
++++++++.++++|+|++.+++..+..+...|+++.++.++..... ......++|++.+++.............++
T Consensus 110 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 189 (434)
T d1q1sc_ 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 189 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhH
Confidence 9999999999999999999888889999999999999999985432 356678899999999987667777778899
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
++.+..++++++++++..+++++++++..++.....+.+.|+++.+++++.++++.++..+++++.+++.+++.....++
T Consensus 190 l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 269 (434)
T d1q1sc_ 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 269 (434)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHH
Confidence 99999999999999999999999999988887778888899999999999999999999999999999998888888999
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------------------
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------- 279 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------------------------------------- 279 (363)
+.|+++.+..++.++++++++.|+|+|.|++..+.+....+.+
T Consensus 270 ~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~ 349 (434)
T d1q1sc_ 270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 349 (434)
T ss_dssp HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999887666555444
Q ss_pred -----------------------------HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 280 -----------------------------EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 280 -----------------------------~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+++..+++.+......+.++..+++.||++.|+.|++|+|+++++.|.++|
T Consensus 350 ~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il 429 (434)
T d1q1sc_ 350 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429 (434)
T ss_dssp HHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334444444444555567888999999999999999999999999999999
Q ss_pred HhhcC
Q psy10729 331 SMAFN 335 (363)
Q Consensus 331 ~~~~~ 335 (363)
++||.
T Consensus 430 ~~~f~ 434 (434)
T d1q1sc_ 430 EKYFS 434 (434)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 99994
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=9.4e-29 Score=230.63 Aligned_cols=266 Identities=27% Similarity=0.366 Sum_probs=240.0
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|..|+.+|.++.+..+ .....+.+.|+++.++.+|.+++.+++..|+|+|+|++..++..+..+.+.|+++.++.++.
T Consensus 136 iq~~a~~~L~ni~~~~~-~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~ 214 (503)
T d1wa5b_ 136 LQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 214 (503)
T ss_dssp HHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcc
Confidence 37789999999765543 56678899999999999999999999999999999999888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
+.+..++..++|++.+++...+.........+++|.+..++...+ .+++..++|++.+++.............++++.+
T Consensus 215 ~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 293 (503)
T d1wa5b_ 215 SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 293 (503)
T ss_dssp SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhh
Confidence 999999999999999999775554455566889999999998877 5899999999999998764434445567899999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
+.++.++++.++..++.++++++.+.+.....+++.|+++.+..++.++++.++..++|+++|++.+++.....+++.|+
T Consensus 294 ~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~ 373 (503)
T d1wa5b_ 294 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 373 (503)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred hhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccc
Confidence 99999999999999999999999998888888899999999999999999999999999999999999999899999999
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++.++..+.+++++++++|+|+|+|++.
T Consensus 374 l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 374 IPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999985
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.6e-27 Score=222.11 Aligned_cols=330 Identities=15% Similarity=0.218 Sum_probs=268.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|..+. .++ +....+++.|+++.|+++|.+++++++..|+++|.+++.+++..+..+.+.|++|.|+.++++
T Consensus 77 ~~~a~~~L~~l~-~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 154 (529)
T d1jdha_ 77 ARCTAGTLHNLS-HHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHHHHHHHHHT-TSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHh-CCc-hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc
Confidence 556788888864 332 556889999999999999999999999999999999998888888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++++++..+++++.+++..++..+..+...|+++.++.++...+...++..+++++.+++.+.+ ........++++.+.
T Consensus 155 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~ 233 (529)
T d1jdha_ 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALG 233 (529)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHH
T ss_pred cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHH
Confidence 9999999999999999988888888888999999999999866667899999999999997653 334455678999999
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
.++.++++.++..+++++.+++...... ....|+++.+++++.++++.++..|+++|++++.+++.....+.+.+++
T Consensus 234 ~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i 310 (529)
T d1jdha_ 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred HHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhH
Confidence 9999999999999999999998655432 1224779999999999999999999999999999888888889999999
Q ss_pred HHHHHhhc--CChHhHHHHHHHHHHHHhcCC--HHHHHHHH----------H----------------------------
Q psy10729 242 QKMKKLLS--SSRVNIVKEAAWTISNITAGN--SRQIDHVI----------Q---------------------------- 279 (363)
Q Consensus 242 ~~L~~~l~--~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~----------~---------------------------- 279 (363)
+.++..+. ++.++++..|+++|.|++... .+..+..+ .
T Consensus 311 ~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~ 390 (529)
T d1jdha_ 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 390 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhh
Confidence 99999884 456789999999999998652 22222211 1
Q ss_pred ------HHHHHHHHHHHh-------------------------------------cccchHHHHHHHHcCcHHHHHHHhc
Q psy10729 280 ------EGLDNLLEIALQ-------------------------------------VGELNQMALLVEESGGLEKLEALQH 316 (363)
Q Consensus 280 ------~~l~~ll~~~~~-------------------------------------~~~~~~~~~~l~~~~~~~~L~~l~~ 316 (363)
.++..++..... +......+..+.+.|+++.|.+++.
T Consensus 391 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~ 470 (529)
T d1jdha_ 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 470 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred hhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhC
Confidence 122222221110 0111223456778899999999999
Q ss_pred CCcHHHHHHHHHHHHhhcCCC
Q psy10729 317 HENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 317 ~~~~~v~~~a~~~l~~~~~~~ 337 (363)
+++++++..|.+++..+..++
T Consensus 471 ~~~~~v~~~a~~aL~~L~~~~ 491 (529)
T d1jdha_ 471 SPIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSH
T ss_pred CCCHHHHHHHHHHHHHHhcCh
Confidence 999999999999999987654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.7e-26 Score=210.75 Aligned_cols=267 Identities=27% Similarity=0.410 Sum_probs=234.9
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|..|+.+|..+.+..+ +....+++.|+++.++++|.+++++++..|+++|++++.+++..+..+.+.|+++.++.++.
T Consensus 73 v~~~a~~~L~~la~~~~-~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~ 151 (434)
T d1q1sc_ 73 IQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151 (434)
T ss_dssp HHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCh-hhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHH
Confidence 37789999999765443 56788999999999999999999999999999999999888999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 81 SPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 81 ~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
..+ ......++|++.+++...+.........++++.+..++.+++ .+++..++|++.+++.+.+.........+
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 230 (434)
T d1q1sc_ 152 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKG 230 (434)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccc-cchhhhHHhhhcccchhhhhhHHHHhhcc
Confidence 654 356678899999999876655555556788999999998877 58999999999999987543333344568
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+++.++.++.++++.++..+++++++++.+++.....+++.|+++.+++++++++++++..|++++++++.+++.....+
T Consensus 231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 310 (434)
T d1q1sc_ 231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310 (434)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHH
Confidence 99999999999999999999999999999888888888999999999999999999999999999999999888888889
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.+.|+++.++.++.+++++++..|+|++.|++..
T Consensus 311 ~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~ 344 (434)
T d1q1sc_ 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344 (434)
T ss_dssp HHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998863
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.2e-26 Score=212.65 Aligned_cols=329 Identities=20% Similarity=0.185 Sum_probs=264.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHH-cCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIE-AGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~-~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|.+|+..+.++.... .....++. .|+++.++++| .+++++++..|+++|.+++ .+++.+..+++.|++|.|+.+|
T Consensus 34 ~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL 110 (529)
T d1jdha_ 34 VNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKML 110 (529)
T ss_dssp HHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHh
Confidence 567788888865432 22344444 47899999999 5678899999999999999 5788889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
++++++++..++++|++++.+++..+..+.+.|++|.|+.++.+++ .+++..+++++.+++..+..........+.++.
T Consensus 111 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 189 (529)
T d1jdha_ 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQA 189 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHHHHhcccchH
Confidence 9999999999999999999888888888999999999999998777 599999999999999876444455566788999
Q ss_pred HHHhhcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 160 LNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 160 l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
++.++.+ +++.++..+++++.+++...+. ...+++.|+++.++.++.+++++++..+++++.+++...... ....
T Consensus 190 L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~ 265 (529)
T d1jdha_ 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGME 265 (529)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTSTTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhccccc-cchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhh
Confidence 9999966 4567899999999999876554 477899999999999999999999999999999997643321 2224
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH-----------------hc----ccch
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIAL-----------------QV----GELN 296 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~-----------------~~----~~~~ 296 (363)
|+++.|+.++.++++.++..|+++|.|++.++++....+.+ .++..++.... .+ ...+
T Consensus 266 ~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~ 345 (529)
T d1jdha_ 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcch
Confidence 78999999999999999999999999999988877666665 33333333221 11 1123
Q ss_pred HHHHHHHHcCcHHHHHHHhcCCc-HHHHHHHHHHHHhhcCCCc
Q psy10729 297 QMALLVEESGGLEKLEALQHHEN-ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 297 ~~~~~l~~~~~~~~L~~l~~~~~-~~v~~~a~~~l~~~~~~~~ 338 (363)
.....+...|+++.+..++.+++ ..+.+.+.+++.++..+++
T Consensus 346 ~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~ 388 (529)
T d1jdha_ 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred hhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhh
Confidence 45667888899999999877654 5688888899998876653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.6e-24 Score=194.15 Aligned_cols=309 Identities=16% Similarity=0.180 Sum_probs=234.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.+|.|+++|++++++++..|+++|++++.++++.+..+.+.|++|.|+++|++++++++..++++|++|+.++++.+..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46899999999999999999999999999889999999999999999999999999999999999999999888888999
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh----------------ccCChhh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----------------HTTDVET 171 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll----------------~~~~~~v 171 (363)
+.+.|+++.++.++....+.+++..+++++.+++..... . .......++.+...+ +..++.+
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-K-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-H-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-H-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 999999999999998766679999999999999987532 2 222233334333332 3356788
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc--------------------------------------------
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-------------------------------------------- 207 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-------------------------------------------- 207 (363)
+..+++++.+++..++.........|+++.++++++
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence 889999998888766554333333444555444331
Q ss_pred -------------------------------------------------------CCChhhHHHHHHHHHHhhcCChh--
Q psy10729 208 -------------------------------------------------------SEETTILTAALRTVGNIATGNDH-- 230 (363)
Q Consensus 208 -------------------------------------------------------~~~~~v~~~a~~~L~nl~~~~~~-- 230 (363)
+.++.++..+.+++.+++.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence 12345666777888887764432
Q ss_pred ---HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------------
Q psy10729 231 ---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLE-------------------- 287 (363)
Q Consensus 231 ---~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~-------------------- 287 (363)
....+.+.|+++.|++++++++++++..+++++.|++.... ....+.+.++..++.
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~ 398 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence 23344567999999999999999999999999999987632 222222333332222
Q ss_pred -HHHhc-ccchHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhhcCCCcc
Q psy10729 288 -IALQV-GELNQMALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 288 -~~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
....+ ......+..+.+.||++.|..+..+ +++.+++.|..+|.++|.+.+.
T Consensus 399 ~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~ 453 (457)
T d1xm9a1 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence 22222 2345678889999999999999754 5789999999999999988764
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.9e-22 Score=170.38 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=177.6
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH-hcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 116 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 116 (363)
.+.+.+.+..|+.+|.+++ .+.+.+..+...|+++.++. ++++++++++..|+++|++++.+++..+..+...|++|.
T Consensus 27 ~~~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~ 105 (264)
T d1xqra1 27 QAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 105 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 3456778899999999999 56778888999999999885 788899999999999999999998988889999999999
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 196 (363)
|+.++.+..+..++..++++|++++.+.++........++++.++.+++++++.++..++++|++++..++.....+.+.
T Consensus 106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (264)
T d1xqra1 106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185 (264)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 99999865557899999999999998875555556678999999999999999999999999999998887778889999
Q ss_pred CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 197 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 197 g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
|+++.++.++++++++++..|+++|.+++..++.....+...
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999999999999999999999999999887776666543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1e-20 Score=160.67 Aligned_cols=194 Identities=9% Similarity=0.065 Sum_probs=168.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
..+.+.+..|+.+|.+++.+ ...+..+...|++++++..+....+.+++..++++|++++.+.+.........+++|.+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 34467888999999999965 45667888999999998754433446999999999999998764334445567999999
Q ss_pred HHhhcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 161 NQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 161 ~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
+.++.+ .++.++..+++++++++.+++.....+.+.|+++.+++++.++++.++..++++|++++.+++.....+.+.|
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 999975 6788999999999999999988888889999999999999999999999999999999998888889999999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+++.|+.+++++++++++.|+++|.+++..+++...
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~ 222 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 222 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999988876643
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.1e-19 Score=162.87 Aligned_cols=285 Identities=16% Similarity=0.205 Sum_probs=208.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++ +.++++..+.+.+.|++|.|+++|.+++++++..|+++|.+++.+++..+..+.+.|+++.++.++.+
T Consensus 19 ~~~a~~~l~~l-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~ 97 (457)
T d1xm9a1 19 QAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR 97 (457)
T ss_dssp HHHHHHHHHHH-TSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhc
Confidence 67889999995 55555778999999999999999999999999999999999998889999999999999999998864
Q ss_pred -CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---------------CCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 82 -PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---------------PNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 82 -~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---------------~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
.+++++..+++++.+++.... .+......| ++.++..+. ...+..++..+++++..++.+.+
T Consensus 98 ~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 175 (457)
T d1xm9a1 98 TGNAEIQKQLTGLLWNLSSTDE-LKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175 (457)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSS-THHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHH
T ss_pred cCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCch
Confidence 568899999999999997744 344444443 344433321 22235677777777776654321
Q ss_pred CCCCHHHHH-----------------------------------------------------------------------
Q psy10729 146 PAPDFEKIK----------------------------------------------------------------------- 154 (363)
Q Consensus 146 ~~~~~~~~~----------------------------------------------------------------------- 154 (363)
.........
T Consensus 176 ~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (457)
T d1xm9a1 176 GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255 (457)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------------
T ss_pred HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhH
Confidence 100000001
Q ss_pred ---------------------------hHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChh-----hHHHHHhcCChHH
Q psy10729 155 ---------------------------ICLPLLNQLIHT-TDVETLSDICWALSYISDGHND-----KIQAVVDTGVVPR 201 (363)
Q Consensus 155 ---------------------------~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~-----~~~~~~~~g~l~~ 201 (363)
+.++.++.++.. .++.++..+.+++.+++..... ....+.+.|+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~ 335 (457)
T d1xm9a1 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQ 335 (457)
T ss_dssp ----------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHH
Confidence 122333333322 3455677778888888755432 2234456799999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+++++.++++.++..+++++++++.. +...+.+ ..++++.++.++.. .+++++..|+++|.|++..+++..+
T Consensus 336 L~~~l~~~~~~v~~~a~~~l~~La~~-~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 413 (457)
T d1xm9a1 336 IARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAK 413 (457)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred HHhhhcCccHHHHHHHHHHHHHHhhC-hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999874 4444444 45689999999853 2567999999999999998888878
Q ss_pred HHHH-HHHHHHHHHHHh
Q psy10729 276 HVIQ-EGLDNLLEIALQ 291 (363)
Q Consensus 276 ~~~~-~~l~~ll~~~~~ 291 (363)
.+++ +++..|+.....
T Consensus 414 ~l~~~g~i~~L~~l~~~ 430 (457)
T d1xm9a1 414 QYFSSSMLNNIINLCRS 430 (457)
T ss_dssp HHCCHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhC
Confidence 7777 567777776554
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-11 Score=116.28 Aligned_cols=287 Identities=11% Similarity=0.057 Sum_probs=203.9
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+..+..+...-.........-..+++.+...+.+.++.++..++.++..++.. ..........+|.+..+++++
T Consensus 299 ~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~---~~~~~~~~~l~p~l~~~l~d~ 375 (588)
T d1b3ua_ 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI---LGKDNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH---HCHHHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHHHhh
Confidence 44555665554433322233334457788888888889999999998888777632 111112235689999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 162 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 162 (363)
+++++..++..+..+...... ..+ ....+|.+..++.+.+ ..++..++.++..++...... .....+.+.+..
T Consensus 376 ~~~v~~~~~~~l~~~~~~~~~--~~~-~~~ll~~l~~~~~d~~-~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ 448 (588)
T d1b3ua_ 376 CPEVRLNIISNLDCVNEVIGI--RQL-SQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMA 448 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCH--HHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhcch--hhh-hhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcChH---hHHHHHHHHHHh
Confidence 999999998888877633211 111 2346788888888776 589999999988887642211 112456777888
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchH
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 242 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 242 (363)
++.++...++..|+++++.++...... .....+++.+.+++.+++..+|..++.+++.+....+ .......++|
T Consensus 449 ~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp 522 (588)
T d1b3ua_ 449 WLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLP 522 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHH
T ss_pred hccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHH
Confidence 899999999999999999997543211 1223568999999999999999999999998865322 1233456899
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETV 322 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v 322 (363)
.+.++++++.+.||..++++|..+...-+.. . ......+.+..++++++.+|
T Consensus 523 ~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~---------------------------~-~~~~i~~~l~~L~~D~d~dV 574 (588)
T d1b3ua_ 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNS---------------------------T-LQSEVKPILEKLTQDQDVDV 574 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH---------------------------H-HHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH---------------------------h-HHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999997642221 1 11123466778899999999
Q ss_pred HHHHHHHHHhh
Q psy10729 323 YQKCYKIISMA 333 (363)
Q Consensus 323 ~~~a~~~l~~~ 333 (363)
+..|.++++.+
T Consensus 575 r~~A~~al~~l 585 (588)
T d1b3ua_ 575 KYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.1e-11 Score=112.21 Aligned_cols=295 Identities=13% Similarity=0.087 Sum_probs=194.7
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC-Cchh
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARAR 105 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~ 105 (363)
..++|.+..++.++++.+|..++.+|+.++.. ..........+|.+..++++++++++..++..+..++..- ...+
T Consensus 241 ~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~ 317 (588)
T d1b3ua_ 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 34677777777777788888888888877632 1112233467888899999999999999999998887432 2223
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
........+|.+...+.+.+ ..++..++.++..++..-. .......++|.+..++.+++++++..++..+..+...
T Consensus 318 ~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~---~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~ 393 (588)
T d1b3ua_ 318 ENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc---hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence 33333567788888887766 5788888877777664321 1123456789999999999999999999888877643
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
... .. +...++|.+..++.+.++.+|..++.++..++..-.. ..+...+.+.+...+.++...+|..|++++..
T Consensus 394 ~~~--~~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~ 467 (588)
T d1b3ua_ 394 IGI--RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp SCH--HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cch--hh-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 221 11 1234578899999999999999999999988752110 11122456678888888889999999999999
Q ss_pred HhcC-CHHHHH-HHHHHHHHHH------------HHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 266 ITAG-NSRQID-HVIQEGLDNL------------LEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 266 l~~~-~~~~~~-~~~~~~l~~l------------l~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
++.. .++... .++. .+..+ +.....+. ............++.+..+.+++.+.||..|.+++.
T Consensus 468 l~~~~~~~~~~~~i~~-~l~~~~~~~~~~~R~~~~~~l~~l~--~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~ 544 (588)
T d1b3ua_ 468 LVEKFGKEWAHATIIP-KVLAMSGDPNYLHRMTTLFCINVLS--EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp HHHHHCHHHHHHHTHH-HHHHTTTCSCHHHHHHHHHHHHHHH--HHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHH--HHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9864 333221 1111 11000 00000000 000011122346788888999999999999999998
Q ss_pred hhcCCC
Q psy10729 332 MAFNDS 337 (363)
Q Consensus 332 ~~~~~~ 337 (363)
.++..-
T Consensus 545 ~i~~~~ 550 (588)
T d1b3ua_ 545 KIGPIL 550 (588)
T ss_dssp HHGGGS
T ss_pred HHHHHc
Confidence 876543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=7.4e-10 Score=92.85 Aligned_cols=255 Identities=13% Similarity=0.102 Sum_probs=177.0
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
+....+.|+++|+++++.++..|+.+|+.+.. + ..++.++.+++++++.++..|+.+|+.+.......
T Consensus 17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~- 84 (276)
T d1oyza_ 17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 84 (276)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 34567789999999999999999999998863 2 35899999999999999999999999997443221
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
.. .++.+...+.++.+..++..++.+|..++.... ......++.+...+.+.++.++..++.+++.+..
T Consensus 85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~- 153 (276)
T d1oyza_ 85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 153 (276)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence 11 234555554434446899999999999887542 2234577888888889999999999888876542
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
...++.+..++.+.+..++..+..++......... ..+.+...+.+.+..++..+.+++..
T Consensus 154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~ 214 (276)
T d1oyza_ 154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY 214 (276)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccch
Confidence 24467788888888888898888888877665433 33446667778888888888888877
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH---cCcHHHHHHHhcC-CcHHHHHHHHHHHHh
Q psy10729 266 ITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEE---SGGLEKLEALQHH-ENETVYQKCYKIISM 332 (363)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~---~~~~~~L~~l~~~-~~~~v~~~a~~~l~~ 332 (363)
+... .. +..|+.......-.......+.+ .+.++.|..++.. .+.+|+..|...|.+
T Consensus 215 ~~~~--~~--------~~~L~~~l~d~~vr~~a~~aL~~ig~~~~~~~L~~~l~~~~d~~vr~~A~~~L~k 275 (276)
T d1oyza_ 215 RKDK--RV--------LSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 275 (276)
T ss_dssp TTCG--GG--------HHHHHHHHTSSSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred hhhh--hh--------HHHHHHHhCChHHHHHHHHHHHHcCCHHHHHHHHHHHccCCCHHHHHHHHHHHcc
Confidence 6432 11 22222222211111222233333 3467778776544 578999999988764
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.4e-09 Score=106.79 Aligned_cols=235 Identities=15% Similarity=0.195 Sum_probs=144.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-chhHHH
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RARDLL 108 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~ 108 (363)
++.+.+.+.++++..|+.|+.+|+.++.+..+.....+ ..++|.++..++++++.+|..++|+++.++.... .....
T Consensus 397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~- 474 (888)
T d1qbkb_ 397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT- 474 (888)
T ss_dssp HHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-
T ss_pred HHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-
Confidence 45555666888999999999999999976443322211 2467888999999999999999999999874211 11111
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC---------------------
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT--------------------- 167 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--------------------- 167 (363)
.-...++.++..+.+.+ ..++..++++|.+++........ .....+++.+...+...
T Consensus 475 ~~~~~l~~ll~~l~d~~-~~V~~~a~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 552 (888)
T d1qbkb_ 475 YLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELV-PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 552 (888)
T ss_dssp HTTTHHHHHHHHHSSSC-HHHHHHHHHHHHHHHHHHTTSSG-GGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred hhhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence 22567788888887776 58999999999988754322110 00111111111111110
Q ss_pred ------------------------ChhhHHHHHHHH--------------------------------------------
Q psy10729 168 ------------------------DVETLSDICWAL-------------------------------------------- 179 (363)
Q Consensus 168 ------------------------~~~v~~~al~~L-------------------------------------------- 179 (363)
+......++.++
T Consensus 553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 632 (888)
T d1qbkb_ 553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 632 (888)
T ss_dssp GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 000011111111
Q ss_pred --------------HHhccCChhhHHH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHH
Q psy10729 180 --------------SYISDGHNDKIQA-VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244 (363)
Q Consensus 180 --------------~~l~~~~~~~~~~-~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 244 (363)
+.+...-...... +....+++.+...+++.++.+|..|..+++.++..........++ .+++.+
T Consensus 633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l 711 (888)
T d1qbkb_ 633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPIL 711 (888)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHH
Confidence 1111100000111 112234556666777888899999999999998765554433343 367778
Q ss_pred HHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 245 KKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 245 ~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
...+++..+.++..|+|+++.++..
T Consensus 712 ~~~L~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 712 GTNLNPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp HHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999864
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.9e-09 Score=105.70 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=113.7
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+++.+...+++.++.++..+..+++.++..........++ .+++.+.+.+.++.++++..|+|+++.++.......+..
T Consensus 666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py 744 (888)
T d1qbkb_ 666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY 744 (888)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555666677788899999999999888554433222222 346777788888888999999999999987544433333
Q ss_pred HHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccc-------hHHHHHHHHc-
Q psy10729 236 IQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL-------NQMALLVEES- 305 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~~~~l~~~- 305 (363)
++ .+++.|+.+++++ ...++++++.+|+.++...++.....++..+...+......... ..++..+...
T Consensus 745 ~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 745 IP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp SH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred HH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence 32 4778899999875 35688999999999998877766555554444444433322111 1222233221
Q ss_pred -CcHHHHHHH------hcCCcHHHHHHHHHHHHhhc
Q psy10729 306 -GGLEKLEAL------QHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 306 -~~~~~L~~l------~~~~~~~v~~~a~~~l~~~~ 334 (363)
+++..+..+ -..+.++++.....+|..|-
T Consensus 824 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 859 (888)
T d1qbkb_ 824 SGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFK 859 (888)
T ss_dssp GGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 222222221 13456888888888887765
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.4e-08 Score=90.91 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=153.1
Q ss_pred CHHHHHHhcCC--CChhHHHHHHHHHHHhcCCChHhHH-HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 29 VVPICVELLDD--ENPNTQFEATWALTNIASGTSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 29 ~l~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~-~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
+++.++..+.+ .+.+++..|+.++..+......... ........+.+...+.+++++++..++.++..++...+..-
T Consensus 172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 251 (458)
T d1ibrb_ 172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 251 (458)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677777743 4568999999999999865433221 22223456778888889999999999999999986544321
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC-----------------CCCC-C--HHHHHhHHHHHHHhhc
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK-----------------NPAP-D--FEKIKICLPLLNQLIH 165 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-----------------~~~~-~--~~~~~~~i~~l~~ll~ 165 (363)
.........+.+...+.+.+ .+++..++..+..++... .... . ......+.+.+...+.
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 330 (458)
T d1ibrb_ 252 ETYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 330 (458)
T ss_dssp TTTTTTTHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 11112222233334444554 578888887777765311 0000 1 1122345555555554
Q ss_pred c-------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHH
Q psy10729 166 T-------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQ 237 (363)
Q Consensus 166 ~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~ 237 (363)
. .+..++..+..++..++......... .+++.+.+.++++++.+|..|+.+|+.++.+. +...+..+
T Consensus 331 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l- 405 (458)
T d1ibrb_ 331 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 405 (458)
T ss_dssp CCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-
T ss_pred cchhhhccccccHHHHHHHHHHHHHHhccHhhhh----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-
Confidence 3 23457888888888887544322111 24677888889999999999999999998643 22222222
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
..+++.++..++++++.||..|+|+|+.++.
T Consensus 406 ~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999999999874
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.4e-08 Score=100.72 Aligned_cols=258 Identities=13% Similarity=0.104 Sum_probs=175.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|.-|+..|.+.+.......-+. ....+++.|+++|+++++++|..|+.+|+.++..-++... ..+++.|+..+.+
T Consensus 20 R~ma~~dl~~~l~~~~~~~~~~-~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~ 94 (1207)
T d1u6gc_ 20 RFMATNDLMTELQKDSIKLDDD-SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLS 94 (1207)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcccccChH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcC
Confidence 4567788888776543221111 2335789999999999999999999999999866443322 2457888888888
Q ss_pred CCHHHHHHHHHHHHHhhCCCCch-----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARA-----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 156 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 156 (363)
++..++..+..+|..+...-+.. ........+++.+...+....+..++..++.++..+......... .....+
T Consensus 95 ~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~-~~~~~i 173 (1207)
T d1u6gc_ 95 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSI 173 (1207)
T ss_dssp SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT-TTHHHH
T ss_pred CchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhH-HHHHHH
Confidence 88888888887777765321110 011112334555666666666568888889889888775533221 223567
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++.+...+.++++.++..|+.+++.++...+.. .-...++.++..+. +.+...+..++.+++.++...+......
T Consensus 174 l~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 249 (1207)
T d1u6gc_ 174 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY 249 (1207)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHH
Confidence 888888999999999999999999998665432 11234666666554 4456677888888888887544322111
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
. ..+++.+...+.+.+++++..+..++..++...
T Consensus 250 l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 283 (1207)
T d1u6gc_ 250 L-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 283 (1207)
T ss_dssp C-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred H-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence 1 367888999999999999999999999988653
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=4.1e-08 Score=86.06 Aligned_cols=263 Identities=16% Similarity=0.177 Sum_probs=170.6
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHH-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIE-AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~-~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll 79 (363)
..++..+..+.+.+... .+..-. ......+-.+..+++.+.+.-|+.++..+. ..+++|..+.+ ...++.++..+
T Consensus 140 ~~s~~i~~ll~~~~~~~-~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~ll-r~~~~R~~fw~~~~~~~~~l~~il 217 (477)
T d1ho8a_ 140 ISGFNVVSLLVQNGLHN-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKIL 217 (477)
T ss_dssp HHHHHHHHHHTSTTTCC-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccc-cchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHh-cCccHHHHHHHcccchHHHHHHHH
Confidence 34455555555554322 221110 122233333337788889999999999988 46888887743 23456666655
Q ss_pred CC-----------------CCHHHHHHHHHHHHHhhCCCCchhHHHhhc--CChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 80 SS-----------------PHLNLAEQATWALGNIAGDGARARDLLLGL--GTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 80 ~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
.. ....++..++.|++-++.+ +.....+... +.++.++++++....+++.+-++.++.|+
T Consensus 218 ~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nl 296 (477)
T d1ho8a_ 218 QRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQC 296 (477)
T ss_dssp HHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHT
T ss_pred HHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 31 1246789999999999975 4444555443 35888999998777789999999999999
Q ss_pred hcCCCCCC-----CHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhc------cCChhhHHHH--------------
Q psy10729 141 CRNKNPAP-----DFEKIKICLPLLNQLIHT--TDVETLSDICWALSYIS------DGHNDKIQAV-------------- 193 (363)
Q Consensus 141 ~~~~~~~~-----~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~------~~~~~~~~~~-------------- 193 (363)
+....... ......++.+.+..+... .|+++....-..-..+- +..+.+...+
T Consensus 297 l~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se 376 (477)
T d1ho8a_ 297 CSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDN 376 (477)
T ss_dssp TSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCH
T ss_pred hhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCCh
Confidence 97643221 112233455554444433 56766544332211111 1111111111
Q ss_pred --H----------hcCChHHHHHhhc----------CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC
Q psy10729 194 --V----------DTGVVPRLVELLD----------SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 194 --~----------~~g~l~~l~~lL~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~ 251 (363)
- +..++..|+++|+ +.++.+..-||.=++.++++.|..+..+-+.|+-..++.+|.++
T Consensus 377 ~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~ 456 (477)
T d1ho8a_ 377 GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS 456 (477)
T ss_dssp HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS
T ss_pred hHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC
Confidence 1 1125788888886 34677899999999999999999888888889999999999999
Q ss_pred hHhHHHHHHHHHHHHhc
Q psy10729 252 RVNIVKEAAWTISNITA 268 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~ 268 (363)
+++|+.+|..++..+..
T Consensus 457 d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 457 DSRVKYEALKATQAIIG 473 (477)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=6.3e-09 Score=93.23 Aligned_cols=219 Identities=15% Similarity=0.103 Sum_probs=141.6
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+.++..+..................+.+..++.+++++++..++.+|..++...+......+.....+.+...+++.
T Consensus 191 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (458)
T d1ibrb_ 191 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD 270 (458)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555565554432211111222234566677777889999999999999999865544322222233344556666788
Q ss_pred CHHHHHHHHHHHHHhhCCCCc--------------------hhHHHhhcCChHHHHHhhCC------CCcHhHHHHHHHH
Q psy10729 83 HLNLAEQATWALGNIAGDGAR--------------------ARDLLLGLGTMPQILALVQP------NTPTTFLRNIVWA 136 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~--------------------~~~~~~~~g~i~~L~~ll~~------~~~~~~~~~~~~~ 136 (363)
+++++..++.++..++..... ..........+|.+...+.. .+...++..+..+
T Consensus 271 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 350 (458)
T d1ibrb_ 271 IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 350 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHH
Confidence 889999999988888632100 00001112234445554431 1223577888888
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh-hHHHHHhcCChHHHHHhhcCCChhhHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND-KIQAVVDTGVVPRLVELLDSEETTILT 215 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~ 215 (363)
+..++..... . ....+++.+...++++++.++..++.+++.++.+... .... .-..+++.+++.++++++.||.
T Consensus 351 l~~l~~~~~~--~--~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~ 425 (458)
T d1ibrb_ 351 LMLLATCCED--D--IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRD 425 (458)
T ss_dssp HHHHHHHTTT--T--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHhccH--h--hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 8888875422 1 2456788888999999999999999999999965432 2121 1235689999999999999999
Q ss_pred HHHHHHHHhhc
Q psy10729 216 AALRTVGNIAT 226 (363)
Q Consensus 216 ~a~~~L~nl~~ 226 (363)
.|+++++.++.
T Consensus 426 ~a~~~l~~i~~ 436 (458)
T d1ibrb_ 426 TAAWTVGRICE 436 (458)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.2e-06 Score=72.68 Aligned_cols=219 Identities=11% Similarity=-0.004 Sum_probs=151.7
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 69 ~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
....+.|+++|+++++.++..|+.+|+.+.. ...++.+++++.+.+ ..++..++++|..+......
T Consensus 18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-- 83 (276)
T d1oyza_ 18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-- 83 (276)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT--
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc--
Confidence 3557789999999999999999999998852 124689999999877 58999999999988654311
Q ss_pred CHHHHHhHHH-HHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 149 DFEKIKICLP-LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 149 ~~~~~~~~i~-~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.....+ .+..+++++++.++..++.+++.+......... .+++.+...+.++++.++..++.+++.+..
T Consensus 84 ----~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~- 153 (276)
T d1oyza_ 84 ----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND- 153 (276)
T ss_dssp ----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred ----ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence 122233 344467789999999999999999865543322 236788888888999999999988886532
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-------HHHHHHHHHHHhcccchHHHH
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-------EGLDNLLEIALQVGELNQMAL 300 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------~~l~~ll~~~~~~~~~~~~~~ 300 (363)
...++.+..++...+..++..+.+++.+...........++. ..-...... ..
T Consensus 154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----------l~ 213 (276)
T d1oyza_ 154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG----------LS 213 (276)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHH----------HH
T ss_pred ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccc----------cc
Confidence 356778888888888889999999999888776554433332 000000000 01
Q ss_pred HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 301 LVEESGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 301 ~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
.+.....++.|...+.++ +|+..|.++|..+
T Consensus 214 ~~~~~~~~~~L~~~l~d~--~vr~~a~~aL~~i 244 (276)
T d1oyza_ 214 YRKDKRVLSVLCDELKKN--TVYDDIIEAAGEL 244 (276)
T ss_dssp HTTCGGGHHHHHHHHTSS--SCCHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHhCCh--HHHHHHHHHHHHc
Confidence 112233566666655543 4778888888765
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=3.1e-07 Score=80.44 Aligned_cols=272 Identities=11% Similarity=0.053 Sum_probs=170.5
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCChHhHH---HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 33 CVELLDDENPNTQFEATWALTNIASGTSEQTM---TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~---~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+...+..++.-+...+..++..++........ ... .....+-.+....+.+....++.++..+... +..|..+.
T Consensus 127 f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~--~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw 203 (477)
T d1ho8a_ 127 FDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLL--KNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIW 203 (477)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHH--HCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHH--HhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHH
Confidence 44444455555677777778888765333222 222 2334444455677788888899999999876 56777764
Q ss_pred --hcCChHHHHHhhCC----------------CCcHhHHHHHHHHHHHhhcCCCCCCCHHHH--HhHHHHHHHhhcc-CC
Q psy10729 110 --GLGTMPQILALVQP----------------NTPTTFLRNIVWAISNLCRNKNPAPDFEKI--KICLPLLNQLIHT-TD 168 (363)
Q Consensus 110 --~~g~i~~L~~ll~~----------------~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~ll~~-~~ 168 (363)
+...+++++.+++. ....+++..++.|++-|+.+.+. ...... .+.++.++.++.. ..
T Consensus 204 ~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~l~~~~~~~i~~l~~i~~~s~K 282 (477)
T d1ho8a_ 204 LHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF-ANELVQKYLSDFLDLLKLVKITIK 282 (477)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHHHHCCS
T ss_pred HcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHH-HHHHHHhhhHHHHHHHHHHHhhhH
Confidence 34456777666641 11247788889999999876421 111111 2457777777754 67
Q ss_pred hhhHHHHHHHHHHhccCCh-----hhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhc-------CChhHHH
Q psy10729 169 VETLSDICWALSYISDGHN-----DKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIAT-------GNDHQTD 233 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~-----~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~-------~~~~~~~ 233 (363)
.++.+-++.++.|+..... .....++..++++. +..|... |+++... +..|..... .-+++..
T Consensus 283 EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~ 360 (477)
T d1ho8a_ 283 EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVA 360 (477)
T ss_dssp HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHH
Confidence 8899999999999986532 12344566665554 4555432 4443322 222222111 1122222
Q ss_pred ----------------HHHH----------cCchHHHHHhhc----------CChHhHHHHHHHHHHHHhcCCHHHHHHH
Q psy10729 234 ----------------CVIQ----------AGGLQKMKKLLS----------SSRVNIVKEAAWTISNITAGNSRQIDHV 277 (363)
Q Consensus 234 ----------------~l~~----------~~~l~~L~~~l~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 277 (363)
.++. -.+++.|+++|+ +.++.+..-||.=++.++...|.-
T Consensus 361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g---- 436 (477)
T d1ho8a_ 361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES---- 436 (477)
T ss_dssp HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH----
T ss_pred HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch----
Confidence 2221 135777888885 236777777888888888764432
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 278 IQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 278 ~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
+..+.+.|+-+.+..|+.|++++|+..|..+++++..
T Consensus 437 ---------------------r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 437 ---------------------IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp ---------------------HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ---------------------hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999998753
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.57 E-value=5.9e-09 Score=74.57 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=88.3
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHH
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 243 (363)
|.++++.++..|+++|+.+.. ..++.|++.+.++++.+|..|+++|+++.. + +.++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence 356677888888888876531 236778899999999999999999998742 1 35678
Q ss_pred HHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHH
Q psy10729 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVY 323 (363)
Q Consensus 244 L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~ 323 (363)
|..+++++++.|+..|+++|+.+.. .+.++.|..+++++++.|+
T Consensus 58 L~~~l~d~~~~VR~~a~~aL~~i~~------------------------------------~~~~~~L~~ll~d~~~~vr 101 (111)
T d1te4a_ 58 LIKLLEDDSGFVRSGAARSLEQIGG------------------------------------ERVRAAMEKLAETGTGFAR 101 (111)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHCS------------------------------------HHHHHHHHHHTTSCCTHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHhCc------------------------------------cchHHHHHHHHcCCCHHHH
Confidence 9999999999999999999987731 1245667788999999999
Q ss_pred HHHHHHHHhh
Q psy10729 324 QKCYKIISMA 333 (363)
Q Consensus 324 ~~a~~~l~~~ 333 (363)
+.|..+|+++
T Consensus 102 ~~A~~aL~th 111 (111)
T d1te4a_ 102 KVAVNYLETH 111 (111)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHcc
Confidence 9999998864
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.8e-07 Score=94.25 Aligned_cols=217 Identities=14% Similarity=0.150 Sum_probs=152.6
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHh
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l 120 (363)
.+..+..++.+|+.+....... ......+.++..+.+++++++..|..++++++..+.. ..+|.+++.
T Consensus 828 ~~~~~~~al~~Lge~~~~~~~~----~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~--------~~lp~il~~ 895 (1207)
T d1u6gc_ 828 TDSIRLLALLSLGEVGHHIDLS----GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--------EYLPFVLQE 895 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC----SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH--------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHH--------HHhHHHHHH
Confidence 3456777777777765221100 0112356678888999999999999999999854322 235777777
Q ss_pred hCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy10729 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200 (363)
Q Consensus 121 l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~ 200 (363)
+.... ..+...+.++..+...............+++.+...+.+.+..++..+..+++.++...+. .++|
T Consensus 896 l~~~~--~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp 965 (1207)
T d1u6gc_ 896 ITSQP--KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLP 965 (1207)
T ss_dssp HHSCG--GGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHH
T ss_pred HhcCc--hHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHH
Confidence 76543 3445556666665554433323334455666666667778889999999999999866553 3478
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy10729 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 280 (363)
Q Consensus 201 ~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 280 (363)
.+...+.++++.+|..++.++..+....+......+. ..++.++..+++++.++|+.|..+|..++.+.++.+...+..
T Consensus 966 ~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~-~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~ 1044 (1207)
T d1u6gc_ 966 RLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044 (1207)
T ss_dssp HHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9999999999999999999999988866554444443 467778889999999999999999999997765554444443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=5.1e-06 Score=79.78 Aligned_cols=237 Identities=13% Similarity=0.054 Sum_probs=152.2
Q ss_pred CCHHHHHHhcC--CCChhHHHHHHHHHHHhcCCChHhHHHH------------HhCCChHHHHHhcCCCCHHHHHHHHHH
Q psy10729 28 GVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTV------------INANAIPKFLQLLSSPHLNLAEQATWA 93 (363)
Q Consensus 28 g~l~~L~~lL~--~~~~~i~~~a~~~L~~l~~~~~~~~~~i------------~~~~~i~~l~~ll~~~~~~v~~~a~~~ 93 (363)
+.+..+.+.+. +.+..+|..|+-.|.|............ ....+-..++..+.++++.++..++.+
T Consensus 39 ~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~ 118 (861)
T d2bpta1 39 QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQL 118 (861)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566777773 3456789999999988765433221110 011223556777788899999999999
Q ss_pred HHHhhCCC-CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC--HHHHHhHHHHHHHhhcc--CC
Q psy10729 94 LGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLPLLNQLIHT--TD 168 (363)
Q Consensus 94 L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~--~~~~~~~i~~l~~ll~~--~~ 168 (363)
++.++... |.. ..-..++.|+..+.+.++...+..++.++..++...++... ......+++.+...+.+ .+
T Consensus 119 i~~i~~~~~p~~----~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~ 194 (861)
T d2bpta1 119 IAAIADIELPHG----AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETS 194 (861)
T ss_dssp HHHHHHHHGGGT----CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHhCCcC----chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99997431 110 00135677888888777667888889999999876543322 22234455555555543 45
Q ss_pred hhhHHHHHHHHHHhccCChhhHH-HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~-~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
..++..++.++.++....+.... ......+++.+...+.+++++++..++.++..++...+......+..-+...+...
T Consensus 195 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~ 274 (861)
T d2bpta1 195 KAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIAT 274 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998755443211 11122346777888899999999999999999987544433333332222334445
Q ss_pred hcCChHhHHHHHHHHHHHHhc
Q psy10729 248 LSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.++.++.++..+...+..++.
T Consensus 275 ~~~~~~~v~~~~~~~l~~l~~ 295 (861)
T d2bpta1 275 MKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHH
Confidence 566778888888877776654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.2e-06 Score=84.72 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=152.1
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh---
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--- 105 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--- 105 (363)
+++.+...+.+++++++..++.+|..++...++.....+.....+.+...+.+..++++..++..+..++.......
T Consensus 218 i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 297 (876)
T d1qgra_ 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788999999999999999987666555555555566677777888888888888888777763211000
Q ss_pred -----------------HHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH
Q psy10729 106 -----------------DLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 162 (363)
Q Consensus 106 -----------------~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 162 (363)
........++.+...+... +...++..+..++..++..... .....+++.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~i~~ 373 (876)
T d1qgra_ 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKE 373 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh----hhhhhhHHHHHH
Confidence 0011122344444444311 1124666677777766654311 123455677777
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH--HHHHHcCc
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT--DCVIQAGG 240 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~ 240 (363)
.+.+.+...+..++..++.+..+.......-.-..+++.+.+.+.++++.++..++++++.++...+... .... ...
T Consensus 374 ~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~~ 452 (876)
T d1qgra_ 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APL 452 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHH
T ss_pred hhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHh-hhH
Confidence 8888899999999999999987654322222223468889999999999999999999999986332211 0001 123
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++.+...+.+ ++.++..++|++.+++.
T Consensus 453 ~~~l~~~l~~-~~~v~~~~~~~l~~l~~ 479 (876)
T d1qgra_ 453 LQCLIEGLSA-EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHTTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 4445555544 57889999999998863
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.38 E-value=6.4e-08 Score=68.96 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=89.2
Q ss_pred cCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHH
Q psy10729 37 LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 116 (363)
Q Consensus 37 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 116 (363)
|+++++.+|..|++.|+.+.. ..++.|+..++++++.++..++++|+++.. .+.++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence 467788889999988876541 457889999999999999999999998752 124688
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHH
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~ 180 (363)
|..++.+.+ ..++..++++|..+.. ...++.|..+++++++.++..|+.+|.
T Consensus 58 L~~~l~d~~-~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHCC-THHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhccch-hHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999998776 4899999999998732 456888999999999999999988764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=2.9e-05 Score=74.33 Aligned_cols=252 Identities=16% Similarity=0.208 Sum_probs=146.8
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 35 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 35 ~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
..+.++++..+..++.+++.++.........-.-...++.++..+.++++.++..++++++.++...+ ..+.....+
T Consensus 376 ~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~ 452 (861)
T d2bpta1 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA---ESIDPQQHL 452 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG---GGSCTTTTH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc---hhhhhHHhh
Confidence 33477889999999999999996544332222223578999999999999999999999999984321 122223344
Q ss_pred HHHHHhhC--CCCcHhHHHHHHHHHHHhhcCCCCC---CCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCCh
Q psy10729 115 PQILALVQ--PNTPTTFLRNIVWAISNLCRNKNPA---PDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 115 ~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.++..+. ..+...+...+++++..++...... .........+..+...... .+..++..+..++..+.....
T Consensus 453 ~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~ 532 (861)
T d2bpta1 453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred hhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH
Confidence 44444332 1222467788888877766432111 1111122333334333332 233455555554444432111
Q ss_pred hhH---------------------------------------------HHHHh----------cCChHHHHHhhcC-CCh
Q psy10729 188 DKI---------------------------------------------QAVVD----------TGVVPRLVELLDS-EET 211 (363)
Q Consensus 188 ~~~---------------------------------------------~~~~~----------~g~l~~l~~lL~~-~~~ 211 (363)
... ..+.+ ..+++.+.+.+.. ++.
T Consensus 533 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 612 (861)
T d2bpta1 533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA 612 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCch
Confidence 000 00000 0123333334433 345
Q ss_pred hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q psy10729 212 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 212 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~ 290 (363)
.++..++.+++.++..........++ .++|.+...+++.++.++..|+.+++.++...++.....+.+.+..++....
T Consensus 613 ~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~ 690 (861)
T d2bpta1 613 FIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMIS 690 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhC
Confidence 68889999999888754443334443 4788899999999999999999999999876555555555555555555443
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.6e-05 Score=75.02 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=149.5
Q ss_pred CCHHHHHHhcCC--CChhHHHHHHHHHHHhcCCChHhHH-HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDD--ENPNTQFEATWALTNIASGTSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~-~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.+++.++..+.+ ++.+++..|+.++.+.......... ......+++.+...+++++++++..++.++..++...+..
T Consensus 172 ~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 251 (876)
T d1qgra_ 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 456777777743 4567899999999887744322111 1111234667778888999999999999999998655543
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC---------------CC--C-CCH--HHHHhHHHHHHHhh
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK---------------NP--A-PDF--EKIKICLPLLNQLI 164 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~---------------~~--~-~~~--~~~~~~i~~l~~ll 164 (363)
-.........+.+...+.+.. .++...+...+..++... .. . ... .....+++.+...+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 330 (876)
T d1qgra_ 252 METYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333344455555555554 466666666555554310 00 0 111 12234455555555
Q ss_pred cc-------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hHHHHHH
Q psy10729 165 HT-------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVI 236 (363)
Q Consensus 165 ~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~ 236 (363)
.. ++..++..+..++..++.......-. .+++.+.+.+.++++..+..++..++.++.+.. .......
T Consensus 331 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~----~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 406 (876)
T d1qgra_ 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HhcccccccccchHHHHHHHHHHHHHHHhhhhhhh----hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 43 22347777888887777443322111 125666667788888999999999999887543 3333333
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+++.+...+.++++.++..|+|+++.++..
T Consensus 407 -~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999998853
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00044 Score=56.62 Aligned_cols=212 Identities=14% Similarity=0.140 Sum_probs=146.2
Q ss_pred HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh----HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR----DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 65 ~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
.+...+.+..++..|..-+-+.+..+..+++++.+.....+ +.+.. -...+..++...++.++...+...|+-.
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREc 141 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 141 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence 34556889999999998889999999999999987654443 22322 1233333333222235555556666666
Q ss_pred hcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC---ChHHHHHhhcCCChhhHHHH
Q psy10729 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG---VVPRLVELLDSEETTILTAA 217 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g---~l~~l~~lL~~~~~~v~~~a 217 (363)
..+. .....+...+.+..+...++.++-++...|..++..+...++.....++... .+..+..+|.+++.-++..+
T Consensus 142 ik~e-~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 142 IRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp HTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HhhH-HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 6654 2222333345556666778889999999999999999877765545555443 45667789999999999999
Q ss_pred HHHHHHhhcCChhH---HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy10729 218 LRTVGNIATGNDHQ---TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 218 ~~~L~nl~~~~~~~---~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~ 279 (363)
+..|+.+....... .+.+-+..-+..++.+|.+.+..++-+|..++--++++ .+..+..++.
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~ 287 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL 287 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHH
Confidence 99999998733321 12233345788999999999999999999999999886 3454444443
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.038 Score=44.95 Aligned_cols=159 Identities=12% Similarity=0.058 Sum_probs=116.9
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH--HHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccC
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIHT-TDVETLSDICWALSYISDG 185 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~ 185 (363)
...+.+..|+..|..-+ -+.++.++.+.+++.+........ .....-...+..++.. +++++...+-..|..+...
T Consensus 66 ~~~d~l~~Li~~L~~L~-fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~ 144 (330)
T d1upka_ 66 YNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH 144 (330)
T ss_dssp HHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred HHhChHHHHHHhCCCCC-CchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhh
Confidence 34566677777776555 588999999999998865333222 1111112233333332 5677777777788888776
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC---chHHHHHhhcCChHhHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNIVKEAAWT 262 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~~l~~~~~~v~~~a~~~ 262 (363)
..- ...++....+..+.+.+..++-++...|..++..+...++.....++..+ +....-+++.+++.-+++.+...
T Consensus 145 e~l-ak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL 223 (330)
T d1upka_ 145 EPL-AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 223 (330)
T ss_dssp HHH-HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHH-HHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 654 47778888899999999999999999999999999887777666666543 66677888999999999999999
Q ss_pred HHHHhcC
Q psy10729 263 ISNITAG 269 (363)
Q Consensus 263 L~nl~~~ 269 (363)
|+.+...
T Consensus 224 LgelLld 230 (330)
T d1upka_ 224 LGELLLD 230 (330)
T ss_dssp HHHHHHS
T ss_pred HHHHHhh
Confidence 9999865
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.91 E-value=0.0015 Score=51.92 Aligned_cols=61 Identities=7% Similarity=-0.008 Sum_probs=34.2
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHH-----HhhcC-ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVG-----NIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~-----nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 260 (363)
.+.+..+++++++.|+..++..++ .++.. +......+.+. ..+.++..|.+++++|+..|+
T Consensus 164 ~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 164 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA 230 (233)
T ss_dssp GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence 455666777777778777776543 22222 12223333333 345566667777777777654
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.37 E-value=0.0039 Score=49.37 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=13.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHH
Q psy10729 30 VPICVELLDDENPNTQFEATWA 51 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~ 51 (363)
+..|..+++++++.|+..|+..
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~ 89 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYR 89 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHH
Confidence 3445566666666666666543
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.12 Score=43.23 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=94.4
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC----C-------CChhHHHHHHHHHHHhcCCChHhHH-HHHhCCChH
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNIASGTSEQTM-TVINANAIP 73 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~-------~~~~i~~~a~~~L~~l~~~~~~~~~-~i~~~~~i~ 73 (363)
+..|+.-|....-..++.+ ..+|+..|+.+|. . .+...+..++.||..+... ..... .+-...++.
T Consensus 24 L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~ 101 (343)
T d2bnxa1 24 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGIL 101 (343)
T ss_dssp HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHH
T ss_pred HHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHH
Confidence 3344444665554456777 4667888888871 1 1245788999999999954 44444 445568899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCC--CchhHHH----------hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDG--ARARDLL----------LGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~----------~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
.+...+.++...++..++..|..+|... +.....+ -+.+-+.++++.+....+.+....++..+..+.
T Consensus 102 ~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li 181 (343)
T d2bnxa1 102 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 181 (343)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998542 2222222 233556777787876666677777777777777
Q ss_pred cCC
Q psy10729 142 RNK 144 (363)
Q Consensus 142 ~~~ 144 (363)
.+.
T Consensus 182 ~~~ 184 (343)
T d2bnxa1 182 TPA 184 (343)
T ss_dssp TTC
T ss_pred cCc
Confidence 664
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.76 E-value=0.42 Score=39.53 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=80.3
Q ss_pred hHHHHHhhCCC---CcHhHHHHHHHHHHHhh----cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 114 MPQILALVQPN---TPTTFLRNIVWAISNLC----RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 114 i~~L~~ll~~~---~~~~~~~~~~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
+..+..++... .+..+...+.-+++.+. ....... ......+...+....+..+.+-+..++.+|||+-.
T Consensus 125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 201 (336)
T d1lsha1 125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 201 (336)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--
Confidence 45556666632 22455555555555544 3332222 22223444555556667777777888999999963
Q ss_pred hhhHHHHHhcCChHHHHHhhcCC-------ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC--ChHhHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSE-------ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--SRVNIVK 257 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~ 257 (363)
+. .++.+.+++... +..+|..|++++.+++...+...+ +.+..+..+ .++++|.
T Consensus 202 p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRi 264 (336)
T d1lsha1 202 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI 264 (336)
T ss_dssp GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred Hh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHH
Confidence 22 256666666432 456999999999999876554332 335555544 3688888
Q ss_pred HHHHHHHHH
Q psy10729 258 EAAWTISNI 266 (363)
Q Consensus 258 ~a~~~L~nl 266 (363)
.|..+|...
T Consensus 265 aA~~~lm~t 273 (336)
T d1lsha1 265 RSCIVFFES 273 (336)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 888877653
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.2 Score=41.76 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC--ChhHHHHHH----------
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG--NDHQTDCVI---------- 236 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~---------- 236 (363)
......++.|+..+..........+-..+++..++..+.++.+.++..|+..|..+|.- ++.....++
T Consensus 70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~ 149 (343)
T d2bnxa1 70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 149 (343)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence 45778899999999977665544555568899999999999999999999999998852 222222222
Q ss_pred HcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHh
Q psy10729 237 QAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ 315 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~ 315 (363)
+.+-...+++.+.++ ..+.+..+...+..++.+.+. +...-..+..+..+|..+.+..+.
T Consensus 150 e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~d-------------------l~~R~~lR~E~~~~Gl~~il~~l~ 210 (343)
T d2bnxa1 150 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE-------------------LDFRVHIRSELMRLGLHQVLQELR 210 (343)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC-------------------HHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred CCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCccc-------------------HHHHHHHHHHHHHCChHHHHHHHH
Confidence 234556677766654 344444444444334433211 111223455666677766777766
Q ss_pred cCCcHHHHHH
Q psy10729 316 HHENETVYQK 325 (363)
Q Consensus 316 ~~~~~~v~~~ 325 (363)
...++.+..+
T Consensus 211 ~~~~~~L~~Q 220 (343)
T d2bnxa1 211 EIENEDMKVQ 220 (343)
T ss_dssp TCCCHHHHHH
T ss_pred ccCChHHHHH
Confidence 6666665543
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.098 Score=49.93 Aligned_cols=182 Identities=6% Similarity=0.055 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh--------HHHh-
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------DLLL- 109 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--------~~~~- 109 (363)
.+...++..++++++..+..... ... ..+++.++.+|.+++..++..|++++..++....... ..+.
T Consensus 469 ~~~~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p 544 (959)
T d1wa5c_ 469 IPHIILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (959)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred CchHHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh
Confidence 34567889999999998854322 112 2578899999999999999999999999985422110 0010
Q ss_pred -hcCChHHHHHhhCCCCc-Hh---HHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc----c-CChhhHHHHHHHH
Q psy10729 110 -GLGTMPQILALVQPNTP-TT---FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----T-TDVETLSDICWAL 179 (363)
Q Consensus 110 -~~g~i~~L~~ll~~~~~-~~---~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----~-~~~~v~~~al~~L 179 (363)
-...+..++..+..... .. ....+..++..+........ ......+++.+...+. + .++.....+..++
T Consensus 545 ~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l 623 (959)
T d1wa5c_ 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-QPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESI 623 (959)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 01123333333322211 11 11234455554443221111 1122334444444332 2 3466677777777
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
+.+..........-+...++|.+...++.........+...+..+.
T Consensus 624 ~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~ 669 (959)
T d1wa5c_ 624 GAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (959)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 7776433211122233445777777777666666666666665554
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.79 E-value=0.51 Score=44.70 Aligned_cols=217 Identities=12% Similarity=0.120 Sum_probs=111.6
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHH----HhCCChHHHHH----hc---CCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTV----INANAIPKFLQ----LL---SSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i----~~~~~i~~l~~----ll---~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.++..+..++..++.++....-..... ......+.+.. .+ ..+...++..++|+++..+..... ..
T Consensus 416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~--~~ 493 (959)
T d1wa5c_ 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--AQ 493 (959)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--HH
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH--HH
Confidence 4567778888888888764211100000 00011222222 22 344577999999999999855332 22
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC------CH----HHHHhHHHHHHHhhccCChh-----hH
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP------DF----EKIKICLPLLNQLIHTTDVE-----TL 172 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~------~~----~~~~~~i~~l~~ll~~~~~~-----v~ 172 (363)
. ...++.+++.|.+++ ..++..+++++..++....... .. .....++..+...+...... ..
T Consensus 494 ~--~~~~~~l~~~L~~~~-~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~ 570 (959)
T d1wa5c_ 494 L--IELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (959)
T ss_dssp H--HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred H--HHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 2 357888999998766 5899999999999986542211 00 11233444455444332211 12
Q ss_pred HHHHHHHHHhccCC----hhhHHHHHhcCChHHHHHhh----cCC-ChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchH
Q psy10729 173 SDICWALSYISDGH----NDKIQAVVDTGVVPRLVELL----DSE-ETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQ 242 (363)
Q Consensus 173 ~~al~~L~~l~~~~----~~~~~~~~~~g~l~~l~~lL----~~~-~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~ 242 (363)
..++.++..+.... ...... +++.+...+ +++ ++........+++.+... +++....+. ..++|
T Consensus 571 ~~ll~~l~~ii~~~~~~~~~~~~~-----i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p 644 (959)
T d1wa5c_ 571 EFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMP 644 (959)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHH
Confidence 23555555444221 122122 133333333 222 445666777777777653 333333333 34667
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
.+..+++....+....+...+..+
T Consensus 645 ~i~~~~~~~~~~~~~~~~~l~~~~ 668 (959)
T d1wa5c_ 645 TFLTVFSEDIQEFIPYVFQIIAFV 668 (959)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHH
Confidence 777777655444444444444333
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.23 E-value=0.87 Score=37.50 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=80.8
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-------CCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 35 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-------PHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 35 ~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+..+..+.+-...++.+|+|+.. + ..++.+..++.+ .+..++..|+++|.+++...|..
T Consensus 179 ~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--- 244 (336)
T d1lsha1 179 QSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--- 244 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred HhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH---
Confidence 33356666777788999999873 3 457777777753 24689999999999998664421
Q ss_pred HhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccC
Q psy10729 108 LLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDG 185 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~ 185 (363)
..+.+..++. ...+.+++..|...|... .+. ...+..+...+.. ++..|.......|.+++..
T Consensus 245 -----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~--------~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 245 -----VQEIVLPIFLNVAIKSELRIRSCIVFFES--KPS--------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 309 (336)
T ss_dssp -----HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCChHHHHHHHHHHHhc--CCC--------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence 1244555554 344468887777665432 221 3355666666654 5677888888888888864
Q ss_pred Ch
Q psy10729 186 HN 187 (363)
Q Consensus 186 ~~ 187 (363)
..
T Consensus 310 ~~ 311 (336)
T d1lsha1 310 SN 311 (336)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=6.9 Score=31.85 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=98.0
Q ss_pred HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 65 ~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
..++...+..++.++.++|++-|.....++..+....+..|..+ ...+-..+.+.+.......-...+++.++.+..+-
T Consensus 128 ~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~I-r~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf 206 (343)
T d2jaka1 128 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYI-RKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 206 (343)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred hhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhc
Confidence 34444567888999999999999999999999876656665443 34444555565543332234556667777777664
Q ss_pred CCCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q psy10729 145 NPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 223 (363)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~n 223 (363)
..........-+...+..+.+.... ........++..+...++.....+ +..+++.=-..++.=...-+.-+..
T Consensus 207 ~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~~ 281 (343)
T d2jaka1 207 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 281 (343)
T ss_dssp CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHH
Confidence 3322333333334444555544332 233444455555554444332222 1222222111111111122222333
Q ss_pred hhcC-ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 224 IATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 224 l~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
+... .+...+.+.. -+...+...+++++.+|.+.|....
T Consensus 282 il~~~~~~~f~~~~~-~lf~~la~ci~S~h~qVAErAl~~w 321 (343)
T d2jaka1 282 ILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 321 (343)
T ss_dssp HHHTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3221 2333333332 3555566666777777777665544
|
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=1.8 Score=35.48 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=89.5
Q ss_pred HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCC--
Q psy10729 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDG-- 101 (363)
Q Consensus 25 ~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~-- 101 (363)
++...+..|+.+++|+|+..|.....+|..+-+.....|..+++ ..-..+.+++... ...-...++.+++.+..+-
T Consensus 130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~ 208 (343)
T d2jaka1 130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 208 (343)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence 33445667788888999999999888888887666667765553 3345566666422 2222234455555554321
Q ss_pred --CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---CChhhHHHHH
Q psy10729 102 --ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDIC 176 (363)
Q Consensus 102 --~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~~al 176 (363)
++....+.. ..++.+.....-.........++......+ + .-..+.+..++++ .++.=...-+
T Consensus 209 plkeeh~~f~~----~vllPLhk~~~~~~y~~qL~~~v~~f~~kD-p-------~l~~~~i~~llk~WP~t~~~Kev~FL 276 (343)
T d2jaka1 209 PLKEEHKIFLL----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-------TLTEPVVMALLKYWPKTHSPKEVMFL 276 (343)
T ss_dssp SCCHHHHHHHH----HTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-G-------GGHHHHHHHHHHSSCSSCCTTHHHHH
T ss_pred CchHHHHHHHH----HHHHHhccCcchHHHHHHHHHHHHHHHhcC-c-------hhHHHHHHHHHHhCCCCCchHHHHHH
Confidence 111222222 233333333322233444444544444332 1 1112223333333 2333233334
Q ss_pred HHHHHhccCChh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 177 WALSYISDGHND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 177 ~~L~~l~~~~~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
.-+..+...-+. .... +...++..+.+.+++++..|.+.|+...
T Consensus 277 ~el~~il~~~~~~~f~~-~~~~lf~~la~ci~S~h~qVAErAl~~w 321 (343)
T d2jaka1 277 NELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYW 321 (343)
T ss_dssp HHHHHHHHTCCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 444444433222 1111 1223466677777777777777776443
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.39 E-value=7.3 Score=27.19 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=58.6
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHhh
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDS------EETTILTAALRTVGNIA 225 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~ 225 (363)
...++..|..-+.+.++.++..++..|-.+..+..... ..+.+.+.+..+++++.. .+..|+..++..+...+
T Consensus 43 ~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~ 122 (145)
T d1ujka_ 43 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 122 (145)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 35678888888999999999999999999997764333 445556778888888853 45579988998888776
Q ss_pred cCC
Q psy10729 226 TGN 228 (363)
Q Consensus 226 ~~~ 228 (363)
...
T Consensus 123 ~~f 125 (145)
T d1ujka_ 123 VGL 125 (145)
T ss_dssp HHC
T ss_pred HHC
Confidence 543
|