Psyllid ID: psy10736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MGVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MGVQPNDRLKIAREFGDKAAERRansnlgnshiFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLgntytllrdyPTAIDYHLRHLIIAQQLMDRVGEGMI
Flexible Loop (DISEMBL)
mgvqpndrlKIAREFGDKAAerransnlgnsHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI
Low Complexity Region (SEG)
MGVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI
Disordered region (IsUnstruct)
*****************************NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM********
Disordered Region (DISOPRED)
MGVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI
Disordered Region (DISEMBL)
MGVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI
Disordered Region (DISPRO)
MGVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q8VDU0	679	G-protein-signaling modul	yes	N/A	0.721	0.110	0.757	3e-37
P81274	684	G-protein-signaling modul	yes	N/A	0.721	0.109	0.757	3e-37
Q6IR34	673	G-protein-signaling modul	no	N/A	0.740	0.114	0.731	3e-36
Q9R080	673	G-protein-signaling modul	no	N/A	0.740	0.114	0.721	5e-36
Q86YR5	675	G-protein-signaling modul	no	N/A	0.711	0.109	0.711	4e-35
Q96AY4	2481	Tetratricopeptide repeat	no	N/A	0.903	0.037	0.372	1e-11
Q80XJ3	1691	Tetratricopeptide repeat	no	N/A	0.836	0.051	0.379	8e-10
O42393	412	43 kDa receptor-associate	no	N/A	0.692	0.174	0.302	0.0003

>sp|Q8VDU0|GPSM2_MOUSE G-protein-signaling modulator 2 OS=Mus musculus GN=Gpsm2 PE=1 SV=2

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 287

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 288 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 322

Plays an important role in spindle pole orientation (By similarity). Interacts and contributes to the functional activity of G(i) alpha proteins. Acts to stabilize the apical complex during neuroblast divisions.
Mus musculus (taxid: 10090)

>sp|P81274|GPSM2_HUMAN G-protein-signaling modulator 2 OS=Homo sapiens GN=GPSM2 PE=1 SV=3

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 287

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 288 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 322

Plays an important role in spindle pole orientation. Interacts and contributes to the functional activity of G(i) alpha proteins. Acts to stabilize the apical complex during neuroblast divisions.

Homo sapiens (taxid: 9606)

>sp|Q6IR34|GPSM1_MOUSE G-protein-signaling modulator 1 OS=Mus musculus GN=Gpsm1 PE=1 SV=3

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 84/97 (86%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
            +RL IA+EFGDKAAERRA SNLGN+HIFLG +  A+EHYK+TL L++ L D+AVEAQAC
Sbjct: 230 KERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQAC 289

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLL+DY  A +YHLRHL+IAQ+L DRVGEG
Sbjct: 290 YSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEG 326

Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction.

Mus musculus (taxid: 10090)

>sp|Q9R080|GPSM1_RAT G-protein-signaling modulator 1 OS=Rattus norvegicus GN=Gpsm1 PE=1 SV=2

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 84/97 (86%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
            +RL IA+EFGDKAAERRA SNLGN+HIFLG +  A+EHYK+TL L++ + D+AVEAQAC
Sbjct: 230 KERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQIRDQAVEAQAC 289

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLL+DY  A +YHLRHL+IAQ+L DRVGEG
Sbjct: 290 YSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEG 326

Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction.

Rattus norvegicus (taxid: 10116)

>sp|Q86YR5|GPSM1_HUMAN G-protein-signaling modulator 1 OS=Homo sapiens GN=GPSM1 PE=1 SV=2

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 84/97 (86%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
            +RL IA+EFGDKAAERRA SNLGN+H+FLG +  A+E+YK+TL L++ L D+AVEAQAC
Sbjct: 233 KERLAIAKEFGDKAAERRAYSNLGNAHVFLGRFDVAAEYYKKTLQLSRQLRDQAVEAQAC 292

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLL+DY  A +YHLRHL+IAQ+L DRVGEG
Sbjct: 293 YSLGNTYTLLQDYERAAEYHLRHLLIAQELADRVGEG 329

Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction.

Homo sapiens (taxid: 9606)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 55/94 (58%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +A+  GD+  E RA+ NLG++    G Y+ A  +++  LVLA  L DR   + A  SL
Sbjct: 261 LDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSL 320

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           G+ YT + DYP A+  H + +++A+Q  D + E 
Sbjct: 321 GHVYTAIGDYPNALASHKQCVLLAKQSKDELSEA 354

Homo sapiens (taxid: 9606)

>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL +A E G+ + + +A   LG+ H  LG Y+ A    +R L +A+D+ DRA+E+ A   
Sbjct: 178 RLVVAHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACG 237

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQ 94
           LG  Y  + +Y TA+ YH   L IA++
Sbjct: 238 LGGVYQQMGEYDTALQYHQLDLQIAEE 264

Mus musculus (taxid: 10090)

>sp|O42393|RAPSN_CHICK 43 kDa receptor-associated protein of the synapse OS=Gallus gallus GN=RAPSN PE=2 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 27  NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
           ++GN+ + L  +Q A E +++ L  A +  D+ +E + C SLGN Y  ++DY  A+ +  
Sbjct: 128 SMGNAFLGLSIFQKALECFEKALRYAHNNDDKMLECRVCCSLGNFYAQIKDYEKALFFPC 187

Query: 87  RHLIIAQQLMDRVGEG 102
           +    A +L++  G G
Sbjct: 188 K----AAELVNDYGAG 199

Thought to play some role in anchoring or stabilizing the nicotinic acetylcholine receptor at synaptic sites. It may link the receptor to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
242017593	639	G-protein signaling modulator, putative	0.730	0.118	0.906	6e-46
110760901	605	PREDICTED: G-protein-signaling modulator	0.740	0.127	0.876	9e-44
380016502	606	PREDICTED: G-protein-signaling modulator	0.740	0.127	0.876	1e-43
340721029	610	PREDICTED: G-protein-signaling modulator	0.740	0.126	0.876	1e-43
350416774	610	PREDICTED: G-protein-signaling modulator	0.740	0.126	0.876	1e-43
383864679	610	PREDICTED: G-protein-signaling modulator	0.740	0.126	0.855	1e-43
321479324	561	hypothetical protein DAPPUDRAFT_22062 [D	0.730	0.135	0.854	1e-42
345498142	614	PREDICTED: G-protein-signaling modulator	0.740	0.125	0.824	6e-42
332018682	610	G-protein-signaling modulator 2 [Acromyr	0.740	0.126	0.845	1e-41
322786655	595	hypothetical protein SINV_00505 [Solenop	0.740	0.129	0.845	1e-41

>gi|242017593|ref|XP_002429272.1| G-protein signaling modulator, putative [Pediculus humanus corporis] gi|212514168|gb|EEB16534.1| G-protein signaling modulator, putative [Pediculus humanus corporis]

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 96/96 (100%)

Query: 7   DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
           +RL+IAREFGDKAAERRANSNLGNSHIFLGE+++A+E+YKRTLVLAQ+LGDRAVEAQACY
Sbjct: 229 ERLRIAREFGDKAAERRANSNLGNSHIFLGEFESAAEYYKRTLVLAQELGDRAVEAQACY 288

Query: 67  SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           SLGNTYTLLRDYPTAI+YHLRHLIIAQQLMDRVGEG
Sbjct: 289 SLGNTYTLLRDYPTAIEYHLRHLIIAQQLMDRVGEG 324

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110760901|ref|XP_393796.3| PREDICTED: G-protein-signaling modulator 2 [Apis mellifera]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 92/97 (94%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFGDKAAERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 225 NERLKIAREFGDKAAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 284

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDYPTAI+YHL HL IAQQL DRVGEG
Sbjct: 285 YSLGNTYTLLRDYPTAIEYHLWHLEIAQQLKDRVGEG 321

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016502|ref|XP_003692222.1| PREDICTED: G-protein-signaling modulator 2 [Apis florea]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 92/97 (94%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFGDKAAERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 225 NERLKIAREFGDKAAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 284

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDYPTAI+YHL HL IAQQL DRVGEG
Sbjct: 285 YSLGNTYTLLRDYPTAIEYHLWHLEIAQQLKDRVGEG 321

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721029|ref|XP_003398929.1| PREDICTED: G-protein-signaling modulator 2-like [Bombus terrestris]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 92/97 (94%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFGDKAAERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 225 NERLKIAREFGDKAAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 284

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDYPTAI+YHL HL IAQQL DRVGEG
Sbjct: 285 YSLGNTYTLLRDYPTAIEYHLWHLEIAQQLKDRVGEG 321

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416774|ref|XP_003491096.1| PREDICTED: G-protein-signaling modulator 2-like [Bombus impatiens]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 92/97 (94%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFGDKAAERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 225 NERLKIAREFGDKAAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 284

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDYPTAI+YHL HL IAQQL DRVGEG
Sbjct: 285 YSLGNTYTLLRDYPTAIEYHLWHLEIAQQLKDRVGEG 321

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864679|ref|XP_003707805.1| PREDICTED: G-protein-signaling modulator 2 [Megachile rotundata]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/97 (85%), Positives = 93/97 (95%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIA+EFGDKAAERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 225 NERLKIAKEFGDKAAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 284

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDYPTA++YHLRHL IAQQL D+VGEG
Sbjct: 285 YSLGNTYTLLRDYPTAVEYHLRHLEIAQQLKDQVGEG 321

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479324|gb|EFX90280.1| hypothetical protein DAPPUDRAFT_22062 [Daphnia pulex]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/96 (85%), Positives = 93/96 (96%)

Query: 7   DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
           +RL IAREFGDKAAERRA+SNLGN+HIFLGE++ A+EHYK+TL+LAQDLGDRAVEAQACY
Sbjct: 204 ERLNIAREFGDKAAERRAHSNLGNAHIFLGEFETAAEHYKKTLLLAQDLGDRAVEAQACY 263

Query: 67  SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           SLGNTYTLLRDYPTAIDYHLRHL IA++LMD+VGEG
Sbjct: 264 SLGNTYTLLRDYPTAIDYHLRHLRIAEELMDKVGEG 299

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498142|ref|XP_003428162.1| PREDICTED: G-protein-signaling modulator 2-like [Nasonia vitripennis]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 92/97 (94%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFG+KAAERRANSNLGNSHIFLGE++ A++HY+RTLVLAQ+LGD+A EAQAC
Sbjct: 226 NERLKIAREFGEKAAERRANSNLGNSHIFLGEFEKAAQHYRRTLVLAQELGDQAFEAQAC 285

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDY  A++YHLRHL+IAQQL DRVGEG
Sbjct: 286 YSLGNTYTLLRDYSAAVEYHLRHLLIAQQLKDRVGEG 322

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018682|gb|EGI59254.1| G-protein-signaling modulator 2 [Acromyrmex echinatior]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFGDK AERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 225 NERLKIAREFGDKPAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 284

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDY  AI+YHL HL IAQQL DRVGEG
Sbjct: 285 YSLGNTYTLLRDYSAAIEYHLWHLSIAQQLKDRVGEG 321

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786655|gb|EFZ13039.1| hypothetical protein SINV_00505 [Solenopsis invicta]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
           N+RLKIAREFGDK AERRANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQAC
Sbjct: 210 NERLKIAREFGDKPAERRANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQAC 269

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           YSLGNTYTLLRDY  AI+YHL HL IAQQL DRVGEG
Sbjct: 270 YSLGNTYTLLRDYSAAIEYHLWHLSIAQQLKDRVGEG 306

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
FB|FBgn0040080	658	raps "rapsynoid" [Drosophila m	0.913	0.144	0.747	1e-34
MGI|MGI:1923373	679	Gpsm2 "G-protein signalling mo	0.913	0.139	0.757	1.5e-34
RGD|1560967	481	Gpsm2 "G-protein signaling mod	0.913	0.197	0.736	1.7e-34
UNIPROTKB|D4ADC5	613	Gpsm1 "G-protein-signaling mod	0.923	0.156	0.739	1.9e-34
UNIPROTKB|E2QSP1	682	GPSM2 "Uncharacterized protein	0.913	0.139	0.757	2e-34
UNIPROTKB|P81274	684	GPSM2 "G-protein-signaling mod	0.913	0.138	0.757	2e-34
UNIPROTKB|F6V2B9	720	GPSM2 "Uncharacterized protein	0.913	0.131	0.757	2.4e-34
UNIPROTKB|E1BIX7	681	GPSM2 "Uncharacterized protein	0.913	0.139	0.747	2.5e-34
ZFIN|ZDB-GENE-041010-223	662	gpsm2l "G-protein signalling m	0.913	0.143	0.757	2.9e-34
UNIPROTKB|E1BR28	663	GPSM2 "Uncharacterized protein	0.913	0.143	0.747	2.9e-34

FB|FBgn0040080 raps "rapsynoid" [Drosophila melanogaster (taxid:7227)]

 Score = 382 (139.5 bits), Expect = 1.0e-34, P = 1.0e-34
 Identities = 71/95 (74%), Positives = 86/95 (90%)

Query:     7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
             +RL+IAREFGD+AAERRANSNLGNSHIFLG+++ A+EHYKRTL LA +LG+R VEAQ+CY
Sbjct:   243 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 302

Query:    67 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
             SLGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE
Sbjct:   303 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 337

GO:0008356 "asymmetric cell division" evidence=IDA;IMP;NAS;TAS

GO:0008105 "asymmetric protein localization" evidence=TAS

GO:0040001 "establishment of mitotic spindle localization" evidence=TAS

GO:0007400 "neuroblast fate determination" evidence=TAS

GO:0045179 "apical cortex" evidence=IDA;TAS

GO:0045177 "apical part of cell" evidence=NAS

GO:0045175 "basal protein localization" evidence=TAS

GO:0055059 "asymmetric neuroblast division" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=TAS

GO:0045185 "maintenance of protein location" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA

GO:0030695 "GTPase regulator activity" evidence=IEA

GO:0005938 "cell cortex" evidence=TAS

GO:0007405 "neuroblast proliferation" evidence=IMP

GO:0051294 "establishment of spindle orientation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1923373 Gpsm2 "G-protein signalling modulator 2 (AGS3-like, C. elegans)" [Mus musculus (taxid:10090)]

 Score = 381 (139.2 bits), Expect = 1.5e-34, P = 1.5e-34
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct:   228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 287

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct:   288 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 322

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0030695 "GTPase regulator activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0060487 "lung epithelial cell differentiation" evidence=IMP

RGD|1560967 Gpsm2 "G-protein signaling modulator 2" [Rattus norvegicus (taxid:10116)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 70/95 (73%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+Y++TL+LA+ L DRAVEAQ+CYS
Sbjct:   228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKTLLLARQLKDRAVEAQSCYS 287

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AI+YHL+HL IAQ+L DR+GEG
Sbjct:   288 LGNTYTLLQDYEKAIEYHLKHLAIAQELKDRIGEG 322

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA;ISO

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045177 "apical part of cell" evidence=IEA;ISO

GO:0060487 "lung epithelial cell differentiation" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|D4ADC5 Gpsm1 "G-protein-signaling modulator 1" [Rattus norvegicus (taxid:10116)]

 Score = 378 (138.1 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 71/96 (73%), Positives = 84/96 (87%)

Query:     7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
             +RL IA+EFGDKAAERRA SNLGN+HIFLG +  A+EHYK+TL L++ L D+AVEAQACY
Sbjct:   231 ERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACY 290

Query:    67 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             SLGNTYTLL+DY  A +YHLRHL+IAQ+L DRVGEG
Sbjct:   291 SLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEG 326

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

UNIPROTKB|E2QSP1 GPSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 2.0e-34, P = 2.0e-34
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct:   229 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 288

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct:   289 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 323

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

UNIPROTKB|P81274 GPSM2 "G-protein-signaling modulator 2" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 2.0e-34, P = 2.0e-34
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct:   228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 287

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct:   288 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 322

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F6V2B9 GPSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 2.4e-34, P = 2.4e-34
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct:   228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 287

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct:   288 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 322

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

UNIPROTKB|E1BIX7 GPSM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 379 (138.5 bits), Expect = 2.5e-34, P = 2.5e-34
 Identities = 71/95 (74%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRA+EAQ+CYS
Sbjct:   228 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAIEAQSCYS 287

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct:   288 LGNTYTLLQDYEKAIDYHLKHLTIAQELNDRIGEG 322

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

ZFIN|ZDB-GENE-041010-223 gpsm2l "G-protein signalling modulator 2, like" [Danio rerio (taxid:7955)]

 Score = 378 (138.1 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 72/95 (75%), Positives = 84/95 (88%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGD+AAERRA  NLGN++IFLG+++ A+EHYKRTL LA+ L DRAVEAQACYS
Sbjct:   208 RLLIAKEFGDRAAERRAYCNLGNAYIFLGKFEVAAEHYKRTLQLARQLKDRAVEAQACYS 267

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HLIIAQ L DR+GEG
Sbjct:   268 LGNTYTLLQDYERAIDYHLKHLIIAQDLKDRIGEG 302

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0030695 "GTPase regulator activity" evidence=IEA

UNIPROTKB|E1BR28 GPSM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 71/95 (74%), Positives = 86/95 (90%)

Query:     8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
             RL IA+EFGD++AERRA SNLGN++IFLGE++ ASE+YKRTL LA+ L DRAVEAQACYS
Sbjct:   230 RLLIAKEFGDRSAERRAYSNLGNAYIFLGEFETASEYYKRTLQLARQLKDRAVEAQACYS 289

Query:    68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
             LGNTYTLL+DY  AIDYHL+HL+IAQ+L D++GEG
Sbjct:   290 LGNTYTLLQDYEKAIDYHLKHLVIAQELNDKIGEG 324

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VDU0	GPSM2_MOUSE	No assigned EC number	0.7578	0.7211	0.1104	yes	N/A
P81274	GPSM2_HUMAN	No assigned EC number	0.7578	0.7211	0.1096	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	104
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE-AQACYSLGNTYTLLRDYPTA 81
           A +NL      LG+Y  A E  ++ L LA++LG+   E A+A  +L   Y  L DY  A
Sbjct: 6  AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 82 IDYHLRHLIIAQQ 94
          ++Y  + L + + 
Sbjct: 66 LEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
          NLGN +  LG+Y  A E+Y++ L L  D       A A Y+L   Y  L  Y  A++ 
Sbjct: 5  NLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALED 56

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 12 AREFGDKAAER-----RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
          A E+ +KA E       A  NL  ++  LG+Y+ A E Y++ L L  D       A+A Y
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAKAYY 72

Query: 67 SLGNTYTLLRDYPTAIDYHLRHLII 91
          +LG  Y  L  Y  A++ + + L +
Sbjct: 73 NLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.74
KOG1130|consensus	639		99.52
KOG1130|consensus	639		99.51
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.29
KOG1840|consensus	508		99.06
KOG1840|consensus	508		99.04
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.0
PRK15359	144	type III secretion system chaperone protein SscB;	98.98
KOG0553|consensus	304		98.98
KOG1941|consensus	518		98.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.94
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.93
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.9
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.85
KOG1941|consensus	518		98.84
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.84
KOG4626|consensus	966		98.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.81
KOG4626|consensus	966		98.79
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.74
PRK11189	296	lipoprotein NlpI; Provisional	98.73
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	98.73
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.71
KOG1125|consensus	579		98.7
KOG1173|consensus	611		98.68
PRK10803	263	tol-pal system protein YbgF; Provisional	98.68
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.63
PF13371	73	TPR_9: Tetratricopeptide repeat	98.62
PRK11189	296	lipoprotein NlpI; Provisional	98.58
PRK04841	903	transcriptional regulator MalT; Provisional	98.57
PRK15359	144	type III secretion system chaperone protein SscB;	98.56
KOG0543|consensus	397		98.56
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.55
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.54
KOG1586|consensus	288		98.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	98.53
PRK04841	903	transcriptional regulator MalT; Provisional	98.52
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.51
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.47
PF12688	120	TPR_5: Tetratrico peptide repeat	98.46
PRK12370	553	invasion protein regulator; Provisional	98.46
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.43
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.42
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.39
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.38
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.36
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.31
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.31
KOG1126|consensus	638		98.31
PF12688	120	TPR_5: Tetratrico peptide repeat	98.27
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.27
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.27
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.26
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.26
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.25
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.25
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.25
KOG4555|consensus	175		98.25
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.25
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.25
KOG1585|consensus	308		98.24
KOG1155|consensus	559		98.24
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.19
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.19
KOG0547|consensus	606		98.18
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.15
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.14
KOG2002|consensus	1018		98.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.13
KOG0550|consensus	486		98.13
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	98.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.09
KOG4234|consensus	271		98.08
KOG4555|consensus	175		98.08
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.07
KOG1126|consensus	638		98.06
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.06
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.06
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	98.05
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.04
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.03
KOG4642|consensus	284		98.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.0
KOG0553|consensus	304		98.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.99
KOG2002|consensus	1018		97.99
KOG1585|consensus	308		97.98
KOG1125|consensus	579		97.94
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.93
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.93
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.92
KOG1155|consensus	559		97.91
KOG2003|consensus	840		97.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.88
PRK12370	553	invasion protein regulator; Provisional	97.88
KOG1586|consensus	288		97.87
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.85
KOG0548|consensus	539		97.85
PRK15331	165	chaperone protein SicA; Provisional	97.85
KOG1173|consensus	611		97.83
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.82
PF13512	142	TPR_18: Tetratricopeptide repeat	97.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.8
PRK10803	263	tol-pal system protein YbgF; Provisional	97.79
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.78
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.78
PF13512	142	TPR_18: Tetratricopeptide repeat	97.77
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.76
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.75
KOG4234|consensus	271		97.75
KOG2076|consensus	895		97.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.72
KOG0548|consensus	539		97.72
KOG2076|consensus	895		97.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.63
PF13431	34	TPR_17: Tetratricopeptide repeat	97.62
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.61
PRK15331	165	chaperone protein SicA; Provisional	97.61
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.59
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.56
KOG1129|consensus	478		97.55
KOG0547|consensus	606		97.51
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.49
KOG0543|consensus	397		97.48
PF13428	44	TPR_14: Tetratricopeptide repeat	97.47
PF13428	44	TPR_14: Tetratricopeptide repeat	97.46
KOG0551|consensus	390		97.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.42
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	97.39
PRK11906	458	transcriptional regulator; Provisional	97.37
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.33
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.3
KOG1129|consensus	478		97.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.23
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	97.16
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.12
KOG2376|consensus	652		97.12
KOG0551|consensus	390		97.11
KOG4648|consensus	536		97.1
PRK14574	822	hmsH outer membrane protein; Provisional	97.1
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.1
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.1
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.02
KOG4162|consensus	799		96.99
KOG2003|consensus	840		96.96
KOG2471|consensus	696		96.95
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.95
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.9
KOG0550|consensus	486		96.89
PLN02789	320	farnesyltranstransferase	96.88
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.85
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.83
KOG0624|consensus	504		96.81
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.79
KOG2300|consensus	629		96.79
KOG4648|consensus	536		96.79
KOG1128|consensus	777		96.77
KOG3060|consensus	289		96.77
KOG1156|consensus	700		96.76
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.72
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.71
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.71
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.68
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.64
PRK14574	822	hmsH outer membrane protein; Provisional	96.62
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.61
KOG4814|consensus	872		96.6
PF13371	73	TPR_9: Tetratricopeptide repeat	96.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.54
KOG2376|consensus	652		96.5
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.49
KOG3060|consensus	289		96.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.45
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.41
KOG3783|consensus	546		96.37
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.36
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.36
COG5187	412	RPN7 26S proteasome regulatory complex component,	96.35
KOG0495|consensus	913		96.29
PF13431	34	TPR_17: Tetratricopeptide repeat	96.28
PLN02789	320	farnesyltranstransferase	96.26
KOG1174|consensus	564		96.25
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.25
KOG1128|consensus	777		96.24
KOG1463|consensus	411		96.2
KOG0624|consensus	504		96.18
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.14
PRK10941	269	hypothetical protein; Provisional	96.1
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.09
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.08
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.01
KOG3785|consensus	557		95.98
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.95
KOG3364|consensus	149		95.95
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.92
KOG4340|consensus	459		95.88
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	95.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.82
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.8
KOG1174|consensus	564		95.76
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.68
KOG0687|consensus	393		95.65
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	95.61
KOG2796|consensus	366		95.59
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	95.59
KOG3616|consensus	1636		95.57
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.54
KOG1127|consensus	1238		95.5
KOG2581|consensus	493		95.48
KOG3081|consensus	299		95.45
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.34
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.27
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.23
PRK11906	458	transcriptional regulator; Provisional	95.21
KOG1156|consensus	700		95.17
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.17
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	95.14
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.07
KOG2300|consensus	629		94.86
KOG2796|consensus	366		94.82
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.81
KOG3081|consensus	299		94.79
KOG1127|consensus	1238		94.77
KOG4162|consensus	799		94.74
KOG2610|consensus	491		94.71
PLN03218	1060	maturation of RBCL 1; Provisional	94.69
PLN03077	857	Protein ECB2; Provisional	94.66
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.62
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	94.6
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.59
KOG3617|consensus	1416		94.49
KOG0545|consensus	329		94.46
KOG4642|consensus	284		94.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.27
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	94.24
KOG0686|consensus	466		94.21
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.18
TIGR01716	220	RGG_Cterm transcriptional activator, Rgg/GadR/MutR	94.15
PLN03218	1060	maturation of RBCL 1; Provisional	94.11
PLN03077	857	Protein ECB2; Provisional	94.05
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.99
KOG0545|consensus	329		93.92
KOG2908|consensus	380		93.79
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	93.72
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	93.62
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	93.6
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.55
KOG4322|consensus	482		93.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.38
PF04212	69	MIT: MIT (microtubule interacting and transport) d	93.37
KOG2610|consensus	491		93.35
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.34
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	93.06
KOG3617|consensus	1416		92.78
KOG0495|consensus	913		92.44
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.11
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.0
PF04212	69	MIT: MIT (microtubule interacting and transport) d	92.0
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	91.99
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.97
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	91.88
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.85
PF12854	34	PPR_1: PPR repeat	91.73
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.33
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.28
KOG3364|consensus	149		91.06
KOG4340|consensus	459		90.95
KOG2047|consensus	835		90.53
KOG1308|consensus	377		90.53
KOG4507|consensus	886		90.44
PF13041	50	PPR_2: PPR repeat family	90.26
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	90.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.64
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	89.59
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.57
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.57
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	89.51
KOG1839|consensus	1236		89.41
KOG4814|consensus	872		89.05
PF03745	62	DUF309: Domain of unknown function (DUF309); Inter	88.94
COG5187	412	RPN7 26S proteasome regulatory complex component,	88.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	88.67
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.51
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	88.25
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	87.99
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	87.86
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	87.73
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	87.72
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	87.63
KOG2114|consensus	933		87.59
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	87.35
COG5159	421	RPN6 26S proteasome regulatory complex component [	87.2
KOG0890|consensus	2382		87.09
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.95
KOG0376|consensus	476		86.9
PF03635	762	Vps35: Vacuolar protein sorting-associated protein	86.83
KOG2041|consensus	1189		86.76
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.12
KOG1497|consensus	399		85.95
COG3947	361	Response regulator containing CheY-like receiver a	85.9
PF13812	34	PPR_3: Pentatricopeptide repeat domain	85.75
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.51
KOG2114|consensus	933		85.5
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.38
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	85.27
KOG1953|consensus	1235		85.26
KOG1463|consensus	411		85.17
KOG2034|consensus	911		84.72
KOG3785|consensus	557		84.67
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	84.65
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	84.46
cd02656	75	MIT MIT: domain contained within Microtubule Inter	84.27
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	84.27
KOG0376|consensus	476		84.05
KOG1308|consensus	377		83.81
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.65
KOG1464|consensus	440		83.62
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.47
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	83.42
KOG1953|consensus	1235		83.35
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	83.34
KOG1070|consensus	1710		83.01
KOG1464|consensus	440		82.83
KOG0687|consensus	393		82.75
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	82.53
KOG1839|consensus	1236		82.51
KOG2709|consensus	560		82.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	82.06
COG3898	531	Uncharacterized membrane-bound protein [Function u	81.04
KOG1070|consensus	1710		81.02
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.86
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.75
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	80.69
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	80.58
KOG2471|consensus	696		80.52
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	80.06

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.74  E-value=2.9e-16  Score=77.17  Aligned_cols=77  Identities=30%  Similarity=0.442  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ++..+.++.++|.++...|++++|+.++++++++.+..++.. ..+.++.++|.++...|++++|++++++++++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            367789999999999999999999999999999988888765 46999999999999999999999999999999864

...

>KOG1130|consensus

Probab=99.52  E-value=1.3e-13  Score=84.87  Aligned_cols=97  Identities=33%  Similarity=0.467  Sum_probs=46.1

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +|+.++.++.++++....+..++.+|+.|....++++|+.|..+-+.++++.+|..+..+++|.+|+.+...|..++|+.
T Consensus       257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHhcchhh
Q psy10736         84 YHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~~  100 (104)
                      +.++.+++....+++.+
T Consensus       337 fae~hl~~s~ev~D~sg  353 (639)
T KOG1130|consen  337 FAELHLRSSLEVNDTSG  353 (639)
T ss_pred             HHHHHHHHHHHhCCcch
Confidence            44444444444444433

>KOG1130|consensus

Probab=99.51  E-value=4.9e-13  Score=82.45  Aligned_cols=100  Identities=66%  Similarity=0.986  Sum_probs=96.2

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+.-+.++++.||....-+++.++|++|...|+++.|+++|.+++.++.+.++....+..++.+|+.|....++++|+.
T Consensus       217 ~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~  296 (639)
T KOG1130|consen  217 FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT  296 (639)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhccc
Q psy10736         84 YHLRHLIIAQQLMDRVGEGM  103 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~~~~~  103 (104)
                      |.++-+.++..+++.+++++
T Consensus       297 Yh~rHLaIAqeL~DriGe~R  316 (639)
T KOG1130|consen  297 YHQRHLAIAQELEDRIGELR  316 (639)
T ss_pred             HHHHHHHHHHHHHHhhhhHH
Confidence            99999999999999998865

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.35  E-value=2.9e-11  Score=72.44  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A   81 (104)
                      ..|.++.++....++....+.++...+.++... ++++|+.+++++++++...|++...+.++..+|.+|... |++++|
T Consensus        56 ~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~A  134 (282)
T PF14938_consen   56 EAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKA  134 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            457888888888999999999999999998777 999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHhcchhh
Q psy10736         82 IDYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~~~  100 (104)
                      +++|++|+++++..+.+..
T Consensus       135 i~~Y~~A~~~y~~e~~~~~  153 (282)
T PF14938_consen  135 IEYYQKAAELYEQEGSPHS  153 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHHHHCCChhh
Confidence            9999999999998886543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.34  E-value=2.9e-11  Score=57.91  Aligned_cols=64  Identities=33%  Similarity=0.477  Sum_probs=57.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR-DYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~   91 (104)
                      +..+..+|.++...|++++|+.+|.+++++-      +....++.++|.++..+| ++.+|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            4578899999999999999999999999872      234578999999999999 799999999999976

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.29  E-value=2e-10  Score=68.83  Aligned_cols=90  Identities=20%  Similarity=0.206  Sum_probs=79.7

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHh-ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      .++++|++++...|++...+.++..+|.+|... |+++.|+++|++|+++++..+.+.....++..++.++...|+|++|
T Consensus        95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen   95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            468899999999999999999999999999999 9999999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         82 IDYHLRHLIIA   92 (104)
Q Consensus        82 ~~~~~~a~~~~   92 (104)
                      ++.|++.....
T Consensus       175 ~~~~e~~~~~~  185 (282)
T PF14938_consen  175 IEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>KOG1840|consensus

Probab=99.06  E-value=1.3e-08  Score=65.13  Aligned_cols=92  Identities=21%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             chhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      .|++|+.+.+..  .+++..+.++.+||..|...|++++|..++++++++.++.  .++......+.+++.++..+++++
T Consensus       263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E  342 (508)
T KOG1840|consen  263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE  342 (508)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence            467788777755  4789999999999999999999999999999999999873  335566788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy10736         80 TAIDYHLRHLIIAQQL   95 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~~   95 (104)
                      +|..++++++++....
T Consensus       343 ea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  343 EAKKLLQKALKIYLDA  358 (508)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998843

>KOG1840|consensus

Probab=99.04  E-value=1.7e-08  Score=64.64  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             CchhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-C-ChHHHHHHHHHHHHHHHHhCCh
Q psy10736          3 VQPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-G-DRAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus         3 ~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      .++++|+++.++.  ...+.....+.+++.++...+++++|+.++++++.+.... + +....+.++.++|..|..+|++
T Consensus       304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~  383 (508)
T KOG1840|consen  304 EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY  383 (508)
T ss_pred             HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence            4678888888774  3667888899999999999999999999999999998843 2 2336788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcch
Q psy10736         79 PTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        79 ~~A~~~~~~a~~~~~~~~~~   98 (104)
                      .+|.+.+++++.+.+..+..
T Consensus       384 ~ea~~~~k~ai~~~~~~~~~  403 (508)
T KOG1840|consen  384 KEAEELYKKAIQILRELLGK  403 (508)
T ss_pred             hHHHHHHHHHHHHHHhcccC
Confidence            99999999999999876553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.00  E-value=4e-09  Score=49.84  Aligned_cols=60  Identities=23%  Similarity=0.330  Sum_probs=51.4

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+|..+...|++++|++.+++++...      +.-..++..+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            57889999999999999999987653      2346789999999999999999999999999764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.98  E-value=3.2e-09  Score=57.87  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..++. ....+....++.++|.++...|++++|+..|.+++.+.      +.-..+++++|.++...|++++|+.
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a~~~lg~~l~~~g~~~eAi~  113 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEPVYQTGVCLKMMGEPGLARE  113 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            5566665543 34445667888999999999999999999999988752      2224678999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10736         84 YHLRHLIIAQQL   95 (104)
Q Consensus        84 ~~~~a~~~~~~~   95 (104)
                      .|++++.+....
T Consensus       114 ~~~~Al~~~p~~  125 (144)
T PRK15359        114 AFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHhCCCC
Confidence            999999875443

>KOG0553|consensus

Probab=98.98  E-value=4.7e-09  Score=62.44  Aligned_cols=83  Identities=19%  Similarity=0.196  Sum_probs=69.2

Q ss_pred             chhHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -|++|+..+ +.+.-.+.-+..|.+.+.+|..+|.++.|+.-++.++.+      .+..+.+|..||.+|..+|++.+|+
T Consensus        96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCcHHHHH
Confidence            466777644 444555566778899999999999999999999999887      4445789999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      +.|++++++-
T Consensus       170 ~aykKaLeld  179 (304)
T KOG0553|consen  170 EAYKKALELD  179 (304)
T ss_pred             HHHHhhhccC
Confidence            9999999874

>KOG1941|consensus

Probab=98.97  E-value=3.5e-08  Score=60.64  Aligned_cols=98  Identities=21%  Similarity=0.279  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHhC--C--HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREFG--D--KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      ..+|.++.+..+  |  ......+++.++..+...|++-.|.++.+++.+++-..||....+.++.-+|+||...||.+.
T Consensus       185 ~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~  264 (518)
T KOG1941|consen  185 PCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER  264 (518)
T ss_pred             hHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence            346666666655  2  345677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhhcc
Q psy10736         81 AIDYHLRHLIIAQQLMDRVGEG  102 (104)
Q Consensus        81 A~~~~~~a~~~~~~~~~~~~~~  102 (104)
                      |..-|+.+.......||++++.
T Consensus       265 af~rYe~Am~~m~~~gdrmgqv  286 (518)
T KOG1941|consen  265 AFRRYEQAMGTMASLGDRMGQV  286 (518)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHH
Confidence            9999999999999999998764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.94  E-value=1.9e-08  Score=49.94  Aligned_cols=78  Identities=19%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             chhHHHHHHHHhCCHH---HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          4 QPNDRLKIAREFGDKA---AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      .+++|+.++++.-...   .....+..+|.++...|++++|+..+++ ...-.      ....+.+.+|.++..+|++++
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHHTT-HHH
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHHhCCHHH
Confidence            3566666655442111   1555677799999999999999999988 33211      124566677999999999999


Q ss_pred             HHHHHHHH
Q psy10736         81 AIDYHLRH   88 (104)
Q Consensus        81 A~~~~~~a   88 (104)
                      |+..++++
T Consensus        77 Ai~~l~~~   84 (84)
T PF12895_consen   77 AIKALEKA   84 (84)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99999875

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.93  E-value=1.5e-08  Score=55.59  Aligned_cols=83  Identities=14%  Similarity=0.016  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.|..+++.+ --.+.....+++||.++...|++++|+..|.+++.+-  .+++    ..+.+.|.++...|+.+.|..
T Consensus        51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp----~~~~~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363         51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAP----QAPWAAAECYLACDNVCYAIK  124 (157)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCc----hHHHHHHHHHHHcCCHHHHHH
Confidence            45566665544 2345667889999999999999999999999998764  2333    578999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .|+.++..+.
T Consensus       125 aF~~Ai~~~~  134 (157)
T PRK15363        125 ALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHhc
Confidence            9999999883

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.90  E-value=3e-08  Score=48.45  Aligned_cols=52  Identities=27%  Similarity=0.416  Sum_probs=45.9

Q ss_pred             CchhHHHHHHHHhCCHH-HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736          3 VQPNDRLKIAREFGDKA-AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      +++++++++.+..++.. ..+.++.++|.++...|++++|++++++++++.++
T Consensus        26 ~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen   26 DYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            46889999987888665 57999999999999999999999999999998764

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.89  E-value=6.9e-08  Score=53.82  Aligned_cols=75  Identities=21%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ........++..+|.++...|++++|+..+++++.+..   ++.....++.++|.++...|++++|+.++++++.+-+
T Consensus        29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP  103 (168)
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34556788899999999999999999999999988743   3334457899999999999999999999999997643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.85  E-value=8.2e-08  Score=53.49  Aligned_cols=91  Identities=21%  Similarity=0.021  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChh
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      +.+|+..++..    +++.....++.++|.++...|++++|+.++++++.+...... ....+.++.++|..+...|+++
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~  130 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSE  130 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHH
Confidence            34455444333    234445678999999999999999999999999977333221 1223444555555555999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy10736         80 TAIDYHLRHLIIAQQL   95 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~~   95 (104)
                      .|+..+++++...++.
T Consensus       131 ~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        131 IAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888776654

>KOG1941|consensus

Probab=98.84  E-value=1.7e-07  Score=57.76  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=88.3

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh----
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY----   78 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----   78 (104)
                      ++++++..++-+.||....+.++..+|.+|...|+.+.|-.-|+++..+....||....+.++...+.......-.    
T Consensus       227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~  306 (518)
T KOG1941|consen  227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKIC  306 (518)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4688999999999999999999999999999999999999999999999999999999999988888776554433    


Q ss_pred             -hHHHHHHHHHHHHHHHhcchhhc
Q psy10736         79 -PTAIDYHLRHLIIAQQLMDRVGE  101 (104)
Q Consensus        79 -~~A~~~~~~a~~~~~~~~~~~~~  101 (104)
                       -.|+++-.++++++..+|.+..+
T Consensus       307 ~Crale~n~r~levA~~IG~K~~v  330 (518)
T KOG1941|consen  307 NCRALEFNTRLLEVASSIGAKLSV  330 (518)
T ss_pred             ccchhHHHHHHHHHHHHhhhhHHH
Confidence             45999999999999999887654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.84  E-value=8.4e-08  Score=48.68  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736         32 HIFLGEYQAASEHYKRTLVLAQDLGDRA---VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG  102 (104)
Q Consensus        32 ~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  102 (104)
                      ....|++.+|++.+.+..+.........   ....+..+++.++...|++++|+..+++++.+++..+|....+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~   81 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLA   81 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4567899999999999999988777655   5677888999999999999999999999999999999887654

>KOG4626|consensus

Probab=98.84  E-value=1.5e-08  Score=65.94  Aligned_cols=71  Identities=27%  Similarity=0.278  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..+..+.++.|+|+.|..+|+...|++.|.++|.+      .+..+.++.|+|.+|...|+..+|+..|+.++.+-.
T Consensus       417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            33444555555555555555555555555555544      334455666666666666666666666666665543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.82  E-value=8.8e-08  Score=60.24  Aligned_cols=70  Identities=19%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +.....++++|.++...|++++|+..|++++++...   ......+++|+|.+|..+|+.++|+.++++++++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445778999999999999999999999999987321   1112267999999999999999999999999987

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.82  E-value=1.7e-07  Score=52.48  Aligned_cols=76  Identities=26%  Similarity=0.300  Sum_probs=63.7

Q ss_pred             hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         15 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        15 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....+..+..+.++|..+...|++++|+.++++++......   .....++.++|.++...|++++|+..+++++.+..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34567778889999999999999999999999998764432   22356889999999999999999999999998644

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.81  E-value=4.6e-08  Score=60.56  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -|.+|+..+.+. ...+....++.++|.++...|++++|+..+++++.+..      ....++..+|.++...|++++|+
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP------SLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHhCCHHHHH
Confidence            355666555433 22333456789999999999999999999999988732      23467899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQ   93 (104)
Q Consensus        83 ~~~~~a~~~~~   93 (104)
                      ..|++++++..
T Consensus        91 ~~~~~al~l~P  101 (356)
T PLN03088         91 AALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHhCC
Confidence            99999997753

>KOG4626|consensus

Probab=98.79  E-value=4.7e-08  Score=63.69  Aligned_cols=65  Identities=26%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +.+.+|+|+++..+|.+++|...|.++++++.      ..+.+++|+|.+|..+|++++|+.+|++++.+.
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            44556666666666666666666666666532      234556666666666666666666666666543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.74  E-value=9.1e-08  Score=51.26  Aligned_cols=85  Identities=15%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..++..- ..+....++..+|.++...|++++|+.++++++....      .....+..+|.++...|++++|+.
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP------DDPRPYFHAAECLLALGEPESALK  106 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCCHHHHHH
Confidence            455665554431 1233456778889999999999999999988777521      123567889999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10736         84 YHLRHLIIAQQL   95 (104)
Q Consensus        84 ~~~~a~~~~~~~   95 (104)
                      .+++++++.+..
T Consensus       107 ~~~~al~~~p~~  118 (135)
T TIGR02552       107 ALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHhcccc
Confidence            999998876543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.73  E-value=1.1e-07  Score=57.46  Aligned_cols=67  Identities=22%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ....+++++|.++...|++++|+..+++++++.      +....++.++|.++...|++++|+..+++++++.
T Consensus        96 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345667777888888888888888887777652      1123567788888888888888888888887654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=98.73  E-value=6.8e-08  Score=40.37  Aligned_cols=34  Identities=35%  Similarity=0.491  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      ++.+||.+|...|++++|+++|++++.+....++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            3566777777777777777777777766655443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.71  E-value=7.8e-07  Score=48.48  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             HHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         11 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      +....++.+....+...+|..+...|++++|...+++++..   ..++.....+...++.++...|++++|+..++.
T Consensus        37 l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   37 LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            33444555555566666666666666666666666665442   133333444555566666666666666665544

>KOG1125|consensus

Probab=98.70  E-value=2.5e-08  Score=63.71  Aligned_cols=85  Identities=19%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      |+++++.++. +...|.-..+++.||.+.....+.++|+..|.+|+++      .+.-+++++|+|..+..+|.|.+|.+
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------QPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            4555555442 3344555556666666666666677777777776665      44556788999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10736         84 YHLRHLIIAQQL   95 (104)
Q Consensus        84 ~~~~a~~~~~~~   95 (104)
                      +|-.++.+-++.
T Consensus       520 hlL~AL~mq~ks  531 (579)
T KOG1125|consen  520 HLLEALSMQRKS  531 (579)
T ss_pred             HHHHHHHhhhcc
Confidence            999999988763

>KOG1173|consensus

Probab=98.68  E-value=1.8e-07  Score=59.99  Aligned_cols=67  Identities=28%  Similarity=0.423  Sum_probs=58.6

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..-.+.++|.++...+.+++|+.++++++....+      -+.++..+|.+|..+|+++.|+++|.+++.+.+
T Consensus       454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK------DASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            5567899999999999999999999999987443      246788999999999999999999999996643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.68  E-value=5.1e-07  Score=53.83  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=68.5

Q ss_pred             chhHHHHHHHH----hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIARE----FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      -|.+|+..++.    .++......+++.+|.+|...|++++|+..|.+.+..+.   +......++..+|.++...|+++
T Consensus       158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHHHHHHHHHcCCHH
Confidence            35566654433    344455567899999999999999999999999766544   34445678899999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10736         80 TAIDYHLRHLIIAQQ   94 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~   94 (104)
                      +|...|++.++.+..
T Consensus       235 ~A~~~~~~vi~~yP~  249 (263)
T PRK10803        235 KAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHHCcC
Confidence            999999988876543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.63  E-value=6e-07  Score=46.80  Aligned_cols=87  Identities=16%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +.+|+..+...    ++.+....++..+|.++...|+++.|+.++++++....   +......++..+|.++...|++++
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~   94 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDALLKLGMSLQELGDKEK   94 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHHHHHHHHHHHHhCChHH
Confidence            44555554433    33344466788899999999999999999999876532   222234678899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy10736         81 AIDYHLRHLIIAQQ   94 (104)
Q Consensus        81 A~~~~~~a~~~~~~   94 (104)
                      |+.+++++++..+.
T Consensus        95 A~~~~~~~~~~~p~  108 (119)
T TIGR02795        95 AKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHHHHCcC
Confidence            99999999887543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.62  E-value=1.9e-07  Score=44.94  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=51.8

Q ss_pred             hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      |..++...+++++|++.+++++.+...      ....+...|.++...|++.+|...++++++..+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999887332      3467889999999999999999999999977653

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.58  E-value=6.4e-07  Score=54.25  Aligned_cols=72  Identities=18%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ++...+..+..+|.++...|++++|+..+++++.+.      +....++.++|.++...|++++|+..|++++++...
T Consensus        59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  130 (296)
T PRK11189         59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALR------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT  130 (296)
T ss_pred             CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            456678889999999999999999999999998862      223478899999999999999999999999987543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.57  E-value=3.6e-06  Score=57.59  Aligned_cols=92  Identities=11%  Similarity=-0.045  Sum_probs=69.3

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHhCChhHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR--AVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      ++.+++...+..++......++.++|.++...|++++|..++.+++++.+..+..  .....++..+|.++...|++++|
T Consensus       513 ~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  592 (903)
T PRK04841        513 MMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA  592 (903)
T ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            3566666777777777777788888888888888888888888888887776532  22344566778888888888888


Q ss_pred             HHHHHHHHHHHHHh
Q psy10736         82 IDYHLRHLIIAQQL   95 (104)
Q Consensus        82 ~~~~~~a~~~~~~~   95 (104)
                      ...+++++.+....
T Consensus       593 ~~~~~~al~~~~~~  606 (903)
T PRK04841        593 EQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHhHHhhhcc
Confidence            88888888776644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.56  E-value=9.2e-07  Score=48.25  Aligned_cols=63  Identities=21%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +..+|.++...|++++|+.++++++.+      .+....++.++|.++...|++++|+..|++++.+..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            456799999999999999999998765      222357889999999999999999999999998644

>KOG0543|consensus

Probab=98.56  E-value=7.2e-07  Score=55.27  Aligned_cols=70  Identities=26%  Similarity=0.305  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .....++.|++.++..++++..|+.++.++|.+      .+.-..+++..|.++...|+++.|+..|++++++-+.
T Consensus       254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            445778999999999999999999999999876      2223578999999999999999999999999977543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.55  E-value=1.2e-06  Score=57.80  Aligned_cols=80  Identities=14%  Similarity=-0.013  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHhC----CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREFG----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      |.+|+..++..-    ..+....++..+|.++...|++++|+..+++++++..      ....++..+|.++...|++++
T Consensus       310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P------~~~~~~~~la~~~~~~g~~~e  383 (615)
T TIGR00990       310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP------RVTQSYIKRASMNLELGDPDK  383 (615)
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCHHH
Confidence            455555554332    2355667778888888888888888888888776421      112334444444444444444


Q ss_pred             HHHHHHHHHH
Q psy10736         81 AIDYHLRHLI   90 (104)
Q Consensus        81 A~~~~~~a~~   90 (104)
                      |+..++++++
T Consensus       384 A~~~~~~al~  393 (615)
T TIGR00990       384 AEEDFDKALK  393 (615)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.54  E-value=9.9e-07  Score=48.51  Aligned_cols=72  Identities=13%  Similarity=0.065  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      +......+.+|......|++++|...|+....+      .+.....++++|.++..+|++++|++.|.+++.+....+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            566777899999999999999999999886655      233457789999999999999999999999998765433

>KOG1586|consensus

Probab=98.54  E-value=2.5e-06  Score=49.83  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=75.9

Q ss_pred             CCchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhH
Q psy10736          2 GVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPT   80 (104)
Q Consensus         2 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~   80 (104)
                      |..|-++-++.-+.++....+.+|...+++|... ++++|+++++++++++...|.-...+.-+..+|.+|..- .++++
T Consensus        54 G~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ek  132 (288)
T KOG1586|consen   54 GDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEK  132 (288)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHH
Confidence            3445666666677777777888888888887766 999999999999999999987666677788999999765 89999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy10736         81 AIDYHLRHLIIAQQL   95 (104)
Q Consensus        81 A~~~~~~a~~~~~~~   95 (104)
                      |+.+|+++-+.++.-
T Consensus       133 aI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen  133 AIAHYEQAAEYYKGE  147 (288)
T ss_pred             HHHHHHHHHHHHcch
Confidence            999999998877653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=98.53  E-value=5.9e-07  Score=37.47  Aligned_cols=34  Identities=41%  Similarity=0.532  Sum_probs=28.3

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD   57 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   57 (104)
                      ++.+||.+|...|++++|+++|++++.+.+...+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            4789999999999999999999999987766543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.52  E-value=4.7e-06  Score=57.02  Aligned_cols=79  Identities=14%  Similarity=0.028  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      ......+...+|.++...|++++|..++.+++...+..+++.....++.++|.++...|++++|...+++++.+....+
T Consensus       487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~  565 (903)
T PRK04841        487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH  565 (903)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence            3445667888999999999999999999999999999988888888999999999999999999999999999988765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.51  E-value=2.5e-06  Score=47.80  Aligned_cols=84  Identities=20%  Similarity=0.095  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR----   76 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----   76 (104)
                      +++|+..+++.    .+.+.....+.++|.++...|++++|+.++.+++.....      ....+..+|.++...|    
T Consensus        51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603         51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHh
Confidence            44555544433    223334678999999999999999999999999886332      1344556666666655    


Q ss_pred             ---ChhHHHHHHHHHHHHHHH
Q psy10736         77 ---DYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        77 ---~~~~A~~~~~~a~~~~~~   94 (104)
                         ++++|+..++++++..+.
T Consensus       125 a~~~~~~A~~~~~~A~~~~~~  145 (172)
T PRK02603        125 EAGDQDEAEALFDKAAEYWKQ  145 (172)
T ss_pred             HhhCHHHHHHHHHHHHHHHHH
Confidence               466666666666665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.48  E-value=1.1e-06  Score=51.08  Aligned_cols=67  Identities=19%  Similarity=0.173  Sum_probs=34.0

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +++|.|...+.+|++++|..+|++|+.-    ......+.++.|+|.+....|+++.|.+++++++++-..
T Consensus       105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         105 VLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             hhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence            3444444444444444444444444321    111122345556666666666666666666666665443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.47  E-value=1.6e-06  Score=42.59  Aligned_cols=81  Identities=28%  Similarity=0.370  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+++..++.. ...+....++..+|.++...+++++|++++++++......      ..++..+|.++...|++++|..
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------AKAYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------hhHHHHHHHHHHHHHhHHHHHH
Confidence            44555554432 1111223667888999999999999999999887753221      1567888999999999999999


Q ss_pred             HHHHHHHH
Q psy10736         84 YHLRHLII   91 (104)
Q Consensus        84 ~~~~a~~~   91 (104)
                      .+++++..
T Consensus        90 ~~~~~~~~   97 (100)
T cd00189          90 AYEKALEL   97 (100)
T ss_pred             HHHHHHcc
Confidence            99888754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.46  E-value=5.3e-06  Score=43.92  Aligned_cols=70  Identities=24%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      +.+....++..+|.++...|++++|+..+++++.   ...+..........++.++...|++++|+..+-.++
T Consensus        33 ~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   33 SGADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3455566677777777777777777777766543   222211223344456666777777777777665554

>PRK12370 invasion protein regulator; Provisional

Probab=98.46  E-value=1.4e-06  Score=56.90  Aligned_cols=83  Identities=17%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             hHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          6 NDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         6 ~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      .+|+..+++. ...+....++..+|.++...|++++|+..+++++++.      +....++..+|.++...|++++|+..
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS------PISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4555544332 2234445677788888889999999999999988762      12235678888888889999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         85 HLRHLIIAQQ   94 (104)
Q Consensus        85 ~~~a~~~~~~   94 (104)
                      +++++++...
T Consensus       395 ~~~Al~l~P~  404 (553)
T PRK12370        395 INECLKLDPT  404 (553)
T ss_pred             HHHHHhcCCC
Confidence            9888876543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.45  E-value=9.7e-06  Score=44.20  Aligned_cols=78  Identities=22%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +++|...++..    .++.....+...++.++...|++++|+..++.       ..+......+...+|.++...|++++
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~  136 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDE  136 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHH
Confidence            45555544433    46677778899999999999999999998855       22333455678889999999999999


Q ss_pred             HHHHHHHHH
Q psy10736         81 AIDYHLRHL   89 (104)
Q Consensus        81 A~~~~~~a~   89 (104)
                      |+..|++++
T Consensus       137 A~~~y~~Al  145 (145)
T PF09976_consen  137 ARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhC
Confidence            999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.44  E-value=2.5e-06  Score=48.82  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++..+|.++...|++++|+.++++++.....      ...++.++|.++...|++++|+..+++++..
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  128 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED  128 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            455666666777777777777777666654211      1235566677777777777777777777653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.44  E-value=3.1e-06  Score=49.21  Aligned_cols=68  Identities=18%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+.+...+|.-|...|++..|...+++++++-.      ....++..++.+|...|+.+.|.+.|++++.+..+
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~  101 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDP------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence            344455555555555555555555555544411      11233444444444444444444444444444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.43  E-value=5.8e-06  Score=43.02  Aligned_cols=68  Identities=19%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++.+|..+...|++++|+..+.+++...   .+......++..+|.++...|++++|+.++++++....
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            467889999999999999999999987543   22223356788999999999999999999999997653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.42  E-value=1.2e-05  Score=40.82  Aligned_cols=65  Identities=26%  Similarity=0.279  Sum_probs=52.0

Q ss_pred             HHHHHHHhCCHH---HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10736          8 RLKIAREFGDKA---AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY   72 (104)
Q Consensus         8 a~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   72 (104)
                      ..+......+..   ....++.+++..+...|++++|+..+++++.++++.+|......++..+..+.
T Consensus        24 ~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~   91 (94)
T PF12862_consen   24 YFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLL   91 (94)
T ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence            334444444433   56677899999999999999999999999999999999998888877776654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.41  E-value=1.5e-06  Score=42.66  Aligned_cols=65  Identities=35%  Similarity=0.480  Sum_probs=53.7

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ++..+|..+...|++++|+..+.+++.....   .   ..++..+|.++...|++++|+.++++++.....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---N---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4678899999999999999999998765322   1   267789999999999999999999999876443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.39  E-value=1.9e-06  Score=35.24  Aligned_cols=30  Identities=43%  Similarity=0.731  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .++.++|.++..+|++++|+.+|++++++-
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            467788888888888888888888887764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.39  E-value=3.1e-06  Score=55.88  Aligned_cols=61  Identities=23%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ..+.++|.++..+|++++|++.+.+++++-      +....++..+|.+|...|++++|+..+..+.
T Consensus       161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~------p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       161 VYYSNRAACHNALGDWEKVVEDTTAALELD------PDYSKALNRRANAYDGLGKYADALLDLTASC  221 (615)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            457788888888888888888888877651      1224677788888888888888887765543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.38  E-value=4e-06  Score=48.01  Aligned_cols=66  Identities=20%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+.++|.++...|++++|+.++.+++....    .......+.++|.++...|++++|..++++++...
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  165 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID  165 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4566667777777777777777777664311    11223455666777777777777777777776553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.38  E-value=3.3e-06  Score=45.18  Aligned_cols=67  Identities=15%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .......+|..+...|++++|++.+++++....      ....++.++|.++...|++++|+..+++++.+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356688999999999999999999988776521      1236778999999999999999999999987643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.36  E-value=4.1e-06  Score=48.07  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH---------------HHhCC----------------hHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA---------------QDLGD----------------RAVEAQAC   65 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~----------------~~~~~~~~   65 (104)
                      ..+.....+..+|.++...|++++|+..|++++.+.               ...+.                .+....++
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            334445567777888888888888888888776531               11121                11234578


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         66 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        66 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .++|..+...|++++|+.++++++++....
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            899999999999999999999998876543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.31  E-value=4.3e-06  Score=57.88  Aligned_cols=65  Identities=14%  Similarity=0.044  Sum_probs=36.5

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .++.++|.++...|++++|+..+++++...      +....++.++|.++...|++++|+.++++++++..
T Consensus       644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        644 NYQAALGYALWDSGDIAQSREMLERAHKGL------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            344444444444445555555444444431      11234566777777777777777777777776543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.31  E-value=8.1e-05  Score=43.31  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             hHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-------CChHHHHHHHHHHHHHHHHhCC
Q psy10736          6 NDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-------GDRAVEAQACYSLGNTYTLLRD   77 (104)
Q Consensus         6 ~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~   77 (104)
                      .-|+-.++..+ ++...+.++..+|..|...|+.+....++++|++.+.+.       ........+++.+|.+....|+
T Consensus       101 kLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~  180 (214)
T PF09986_consen  101 KLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN  180 (214)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC
Confidence            34444444443 667889999999999999999988888888888887653       1233456788999999999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy10736         78 YPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        78 ~~~A~~~~~~a~~~~~   93 (104)
                      +++|..+|.+.+....
T Consensus       181 ~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  181 YDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999885433

>KOG1126|consensus

Probab=98.31  E-value=2.1e-06  Score=56.02  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      |++|+..++ .++-.+.-=++++.+|.+|..+++++.|.-++++|+++-      +.-..+.+.+|.++...|+.++|+.
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------P~nsvi~~~~g~~~~~~k~~d~AL~  544 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------PSNSVILCHIGRIQHQLKRKDKALQ  544 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC------ccchhHHhhhhHHHHHhhhhhHHHH
Confidence            445555443 334444555677788888888888888888888777662      2223556677777777777777777


Q ss_pred             HHHHHHHH
Q psy10736         84 YHLRHLII   91 (104)
Q Consensus        84 ~~~~a~~~   91 (104)
                      ++++|+.+
T Consensus       545 ~~~~A~~l  552 (638)
T KOG1126|consen  545 LYEKAIHL  552 (638)
T ss_pred             HHHHHHhc
Confidence            77777643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.27  E-value=8.5e-05  Score=39.39  Aligned_cols=69  Identities=28%  Similarity=0.231  Sum_probs=57.6

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+.++++.++-..|+.++|+.+|++++..  .. +......++..+|..+...|++++|+..+++.+.-+..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            35788999999999999999999999874  11 22344578899999999999999999999999987543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.27  E-value=5.4e-06  Score=33.87  Aligned_cols=30  Identities=47%  Similarity=0.662  Sum_probs=26.8

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +.++.++|.++..+|++++|+.++++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.27  E-value=3e-06  Score=40.10  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        33 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...|++++|++.+++++.....      -..+...++.++...|++++|...+++.+...+.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            4578999999999998766322      2356779999999999999999999888765433

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.26  E-value=5.6e-06  Score=33.70  Aligned_cols=30  Identities=37%  Similarity=0.637  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .++..+|.++...|++++|+.+|++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            467788888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.26  E-value=7.8e-06  Score=56.65  Aligned_cols=66  Identities=14%  Similarity=-0.060  Sum_probs=54.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+.++|.++...|++++|+..+++++.+.      +....++.++|.++...|++++|+..+++++++..
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            5678889999999999999999999987762      22236788999999999999999999999987644

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.25  E-value=9.3e-05  Score=39.07  Aligned_cols=89  Identities=13%  Similarity=0.102  Sum_probs=67.2

Q ss_pred             hhHHHHHHHHhCC------HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREFGD------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR-----AVEAQACYSLGNTYT   73 (104)
Q Consensus         5 ~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~   73 (104)
                      +.+|++..+..+.      ....+.|+-.|+..+..+|+|++++....+++..+...|+-     ...+.+-++.+..+.
T Consensus        32 ~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~  111 (144)
T PF12968_consen   32 CRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALE  111 (144)
T ss_dssp             HHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHH
Confidence            4455666554432      24467889999999999999999999999999999876542     223556778899999


Q ss_pred             HhCChhHHHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..|+.++|+..|+.+-+...
T Consensus       112 ~~Gr~~eA~~~fr~agEMia  131 (144)
T PF12968_consen  112 GLGRKEEALKEFRMAGEMIA  131 (144)
T ss_dssp             HTT-HHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHH
Confidence            99999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.25  E-value=8.4e-06  Score=48.03  Aligned_cols=80  Identities=21%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      |..|+..+++ ....+....+++.+|.+|...|+++.|..-|.+++++....      ..+.+|+|..+...||++.|..
T Consensus       116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHHcCCHHHHHH
Confidence            3445544433 33445566778889999999999999999999998875332      2567899999999999999999


Q ss_pred             HHHHHHH
Q psy10736         84 YHLRHLI   90 (104)
Q Consensus        84 ~~~~a~~   90 (104)
                      ++..+..
T Consensus       190 lll~a~l  196 (257)
T COG5010         190 LLLPAYL  196 (257)
T ss_pred             HHHHHHh
Confidence            9888764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.25  E-value=9.1e-06  Score=54.46  Aligned_cols=85  Identities=11%  Similarity=-0.075  Sum_probs=68.0

Q ss_pred             CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      +.+++|+..+++. .-.+.....++.+|.++...|++++|++.|++++.   ...   ....++.++|..+...|+.++|
T Consensus       134 ~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p---~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        134 QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR---QHP---EFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCC---CcHHHHHHHHHHHHHcCCHHHH
Confidence            4677888766655 34566678889999999999999999999999876   221   2236788999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy10736         82 IDYHLRHLIIAQ   93 (104)
Q Consensus        82 ~~~~~~a~~~~~   93 (104)
                      ...|+++++...
T Consensus       208 ~~~~~~a~~~~~  219 (694)
T PRK15179        208 RDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHhhC
Confidence            999999987653

>KOG4555|consensus

Probab=98.25  E-value=2.6e-05  Score=41.93  Aligned_cols=74  Identities=20%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .|....+|+|.+..+...|+.++|++-++++++++...  ....-.++...|.+|..+|+.+.|...|+.+.++..
T Consensus        73 ~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen   73 APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            34567889999999999999999999999998875433  333456788889999999999999999988876643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.25  E-value=2.5e-05  Score=48.65  Aligned_cols=26  Identities=27%  Similarity=0.185  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      +..+|.++...|++++|+..++++++
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~  242 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEE  242 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33444444444444444444444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.25  E-value=5.7e-06  Score=35.24  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      +.++.++|.+|..+|++++|+.++++++++.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            3567777888888888888888888887777655

>KOG1585|consensus

Probab=98.24  E-value=0.00012  Score=43.29  Aligned_cols=91  Identities=12%  Similarity=-0.012  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      ..+|.+..+.....++.+..+-..+.....+..+.++..+++++..+..+.|.+...+.++-.-|.+... -++++|+..
T Consensus        54 LlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~Alql  132 (308)
T KOG1585|consen   54 LLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQL  132 (308)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHH
Confidence            3455555666667788888888888888999999999999999999999999888777777666665544 479999999


Q ss_pred             HHHHHHHHHHhc
Q psy10736         85 HLRHLIIAQQLM   96 (104)
Q Consensus        85 ~~~a~~~~~~~~   96 (104)
                      |++++.+.+..+
T Consensus       133 Yqralavve~~d  144 (308)
T KOG1585|consen  133 YQRALAVVEEDD  144 (308)
T ss_pred             HHHHHHHHhccc
Confidence            999998876544

>KOG1155|consensus

Probab=98.24  E-value=8.7e-06  Score=51.70  Aligned_cols=68  Identities=25%  Similarity=0.345  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      |.-.+.+..||.+|...++.++|+.+|.+++....      ....+++.+|.+|...++..+|..+|++.++..
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34456677888888888888888888888876522      234678888888988889999999988888855

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.21  E-value=3.8e-05  Score=44.87  Aligned_cols=86  Identities=14%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-----
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-----   75 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-----   75 (104)
                      +++|+..++..    ++.+....++..+|.++...|++++|+..+++++.......   ....+++.+|.++...     
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhccccc
Confidence            44555544322    33445556788888999999999999999988876554322   2234677788888765     


Q ss_pred             ---CChhHHHHHHHHHHHHHH
Q psy10736         76 ---RDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        76 ---g~~~~A~~~~~~a~~~~~   93 (104)
                         |++++|+..+++++....
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCC
Confidence               778888888888876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.21  E-value=9.3e-06  Score=50.02  Aligned_cols=67  Identities=12%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ..++..+|.++...|++++|+.++++++.....  ++......++.++.++...|++++|+..+++++.
T Consensus       148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            456777788888888888888888887766443  2223345667788888888888888888888753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.19  E-value=3.8e-05  Score=44.22  Aligned_cols=75  Identities=17%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      .....++..|......|++.+|+..+++.+..+..   +.....+...+|.++...|++.+|+..+++.+......+.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            34567888999999999999999999997665433   3344578899999999999999999999999987766543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.19  E-value=3.8e-05  Score=44.86  Aligned_cols=76  Identities=16%  Similarity=0.076  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      .+.....+..+|..+...|++++|+..+++++....   +......++..+|.++...|++++|+..++++++......
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            345677899999999999999999999999766532   2223446789999999999999999999999998766433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0547|consensus

Probab=98.18  E-value=4.3e-06  Score=53.37  Aligned_cols=70  Identities=20%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...+..+-+.|+-+...|.|++|+.||.+||++...      ....+.|++-+|...|+|++.++...+++++-.+
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~  181 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALELNPD  181 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence            345777889999999999999999999999987432      2467889999999999999999999999987544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.15  E-value=6.8e-05  Score=46.75  Aligned_cols=64  Identities=27%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .++..+|.++...|++++|++.+++++..     ++.....++..++.+|...|++++|...++++++.
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34555566666666666666666665543     11112233445555555555666655555555543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.14  E-value=1.4e-05  Score=34.03  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL   55 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~   55 (104)
                      +.++.++|.+|...|++++|+.++++++.+.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            5689999999999999999999999999998765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.14  E-value=2.1e-05  Score=45.15  Aligned_cols=55  Identities=15%  Similarity=0.110  Sum_probs=41.3

Q ss_pred             HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         34 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        34 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..++.++++..+++++...      +.-...+..+|.+|...|++++|+..|++++.+...
T Consensus        51 ~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~  105 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE  105 (198)
T ss_pred             CchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3667788888888776552      112357788899999999999999999999887543

>KOG2002|consensus

Probab=98.14  E-value=1.2e-05  Score=54.69  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHhCCHHH-HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFGDKAA-ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +..|++++.+..+... ...++.|+|++|..+|+|..|++.|+.++..+-...++    .++..||.+++..|.+.+|.+
T Consensus       662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~----~vl~~Lara~y~~~~~~eak~  737 (1018)
T KOG2002|consen  662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS----EVLHYLARAWYEAGKLQEAKE  737 (1018)
T ss_pred             chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHHhhhHHHHHH
Confidence            4455555555543333 34556667777777777777777776666555433332    345666677777777777776


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      ++..++.+.
T Consensus       738 ~ll~a~~~~  746 (1018)
T KOG2002|consen  738 ALLKARHLA  746 (1018)
T ss_pred             HHHHHHHhC
Confidence            666666543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.13  E-value=1.3e-05  Score=32.66  Aligned_cols=31  Identities=35%  Similarity=0.671  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .++..+|.+|...|++++|..+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567778888888888888888888877654

...

>KOG0550|consensus

Probab=98.13  E-value=1.7e-05  Score=49.83  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +....+.+|.+.+.+....|+..+|+.-++.++.+      ....+.++...|.++...++|++|.+.|+++++.-+.
T Consensus       282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            44567889999999999999999999999999887      4556789999999999999999999999999987666

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=98.10  E-value=0.00023  Score=40.29  Aligned_cols=87  Identities=17%  Similarity=0.182  Sum_probs=69.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736          9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      +.-++..........++..+|..|...|+.+.|++.|.++.+....   +...+.++.++-.+....+++.....+..++
T Consensus        23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3344445566777889999999999999999999999997775433   3344677788888889999999999999999


Q ss_pred             HHHHHHhcch
Q psy10736         89 LIIAQQLMDR   98 (104)
Q Consensus        89 ~~~~~~~~~~   98 (104)
                      -.+.+..+++
T Consensus       100 ~~~~~~~~d~  109 (177)
T PF10602_consen  100 ESLIEKGGDW  109 (177)
T ss_pred             HHHHhccchH
Confidence            9888886654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.09  E-value=3.3e-05  Score=50.24  Aligned_cols=69  Identities=12%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ++....++++.++..|...|++++|+++++++|+.      .+..+..+..-|.++-..|++.+|.+.++.+-.+
T Consensus       189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL  257 (517)
T ss_pred             CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            45667889999999999999999999999999987      4556788999999999999999999999988654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4234|consensus

Probab=98.08  E-value=6e-05  Score=43.42  Aligned_cols=82  Identities=16%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      |..|++.+.... ......+|.+.|.+...++.++.|+.-+.++|++..      .-..++...+.+|.....+++|++.
T Consensus       118 Y~~Ale~cp~~~-~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p------ty~kAl~RRAeayek~ek~eealeD  190 (271)
T KOG4234|consen  118 YQEALESCPSTS-TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP------TYEKALERRAEAYEKMEKYEEALED  190 (271)
T ss_pred             HHHHHHhCcccc-HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc------hhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            445555544333 255667788888888888888888888888887732      2335666778888888888888888


Q ss_pred             HHHHHHHHH
Q psy10736         85 HLRHLIIAQ   93 (104)
Q Consensus        85 ~~~a~~~~~   93 (104)
                      |++.+++-.
T Consensus       191 yKki~E~dP  199 (271)
T KOG4234|consen  191 YKKILESDP  199 (271)
T ss_pred             HHHHHHhCc
Confidence            888776544

>KOG4555|consensus

Probab=98.08  E-value=1.4e-05  Score=42.99  Aligned_cols=65  Identities=22%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      +-.-|......|+++.|++.|.+++.++.+      .+.+++|.+..+..+|+.++|++.++++++++...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            444577888899999999999999998643      35789999999999999999999999999987544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.07  E-value=9e-05  Score=43.92  Aligned_cols=74  Identities=12%  Similarity=-0.029  Sum_probs=60.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      ....+..|......|++++|++.+++.+....   .+.....+...+|.++...+++++|+..+++.++..+..++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~  105 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI  105 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence            44467788888999999999999999776433   344556778999999999999999999999999887766543

>KOG1126|consensus

Probab=98.06  E-value=3.6e-06  Score=54.91  Aligned_cols=71  Identities=23%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH----------------------------hCChHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD----------------------------LGDRAVEAQACYSLGNTYT   73 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~l~~~~~   73 (104)
                      -.++-.+|++|..+++++.|+.++++|+++-..                            .+-....-.+++.+|.+|.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            344556667777777777777777766653110                            0111223458899999999


Q ss_pred             HhCChhHHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+++++.|+-+|++|+++-
T Consensus       501 Kqek~e~Ae~~fqkA~~IN  519 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEIN  519 (638)
T ss_pred             ccchhhHHHHHHHhhhcCC
Confidence            9999999999999998764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.06  E-value=2.7e-05  Score=31.61  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=26.3

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      .++..+|.++...|++++|++++++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            568899999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR00540 hemY_coli hemY protein

Probab=98.06  E-value=0.00011  Score=46.55  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=59.0

Q ss_pred             HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++.+. ...+..+|.++...|++++|.++++++..+... .++    ..+..+|.++...|+.++|.+++++++...-
T Consensus       328 ~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       328 NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDA----NDLAMAADAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            3344443 467788999999999999999999964433221 121    2345889999999999999999999998877


Q ss_pred             Hhcch
Q psy10736         94 QLMDR   98 (104)
Q Consensus        94 ~~~~~   98 (104)
                      ..++.
T Consensus       402 ~~~~~  406 (409)
T TIGR00540       402 AIQDN  406 (409)
T ss_pred             ccccc
Confidence            66654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=98.05  E-value=0.00044  Score=41.10  Aligned_cols=83  Identities=12%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ...+|++.+...+.......+...+|..|...|++++|+.+++.+...+++.+-......++..+-.+....|+.+..+.
T Consensus       160 lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~  239 (247)
T PF11817_consen  160 LLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT  239 (247)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45678888888888888899999999999999999999999999988888888887788889999999999999887776


Q ss_pred             HHH
Q psy10736         84 YHL   86 (104)
Q Consensus        84 ~~~   86 (104)
                      +.-
T Consensus       240 ~~l  242 (247)
T PF11817_consen  240 TSL  242 (247)
T ss_pred             HHH
Confidence            653

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.04  E-value=2.7e-05  Score=46.30  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .-++......++++||.+++.+|++++|...|..+..   ..++......+++.+|.+....|+.++|-..+++.++-+.
T Consensus       170 ~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         170 KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            3355667788999999999999999999999988654   4455555568899999999999999999999999887654


Q ss_pred             H
Q psy10736         94 Q   94 (104)
Q Consensus        94 ~   94 (104)
                      .
T Consensus       247 ~  247 (262)
T COG1729         247 G  247 (262)
T ss_pred             C
Confidence            3

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.03  E-value=2.6e-05  Score=48.07  Aligned_cols=72  Identities=17%  Similarity=0.092  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +..+........+|.++...|++++|+..++++++.....      ..++..+|.++...|++++|+.+++++++..+
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3445556677788999999999999999999998863221      46778999999999999999999999988654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4642|consensus

Probab=98.03  E-value=6.4e-05  Score=44.23  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=75.3

Q ss_pred             CchhHHHH-HHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLK-IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      ++|..+++ +.+.+--.|..+.-+.+.+.+|....+++.+..-..+++++      .+..+..++.+|........+.+|
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~h~flg~~~l~s~~~~ea   97 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKAHYFLGQWLLQSKGYDEA   97 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHHHHHHHHHHHhhccccHH
Confidence            45555664 45566566667778899999999999999999999999988      556788999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchh
Q psy10736         82 IDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~~   99 (104)
                      +..+++++.+.+....+.
T Consensus        98 I~~Lqra~sl~r~~~~~~  115 (284)
T KOG4642|consen   98 IKVLQRAYSLLREQPFTF  115 (284)
T ss_pred             HHHHHHHHHHHhcCCCCC
Confidence            999999999988765443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.00  E-value=5.7e-05  Score=47.10  Aligned_cols=64  Identities=9%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +...|......|++++|+++|.+++....      ....++.++|.++...|++++|+..+++++.+...
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            44567888899999999999999987622      12467899999999999999999999999987543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.00  E-value=5.8e-05  Score=49.20  Aligned_cols=67  Identities=18%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ..++..+|......|++++|...+++++++-     + . ..++..+|.++...|++++|++.|++|+.+....
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----p-s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE-----M-S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            3667778888888999999999999998874     1 2 4689999999999999999999999999775443

>KOG0553|consensus

Probab=98.00  E-value=6.2e-05  Score=45.38  Aligned_cols=70  Identities=23%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....+.-+..-|+-....++|.+|+..|.+||.+-      +.-+..|++.+-+|..+|.++.|++.++.++.+=.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp  146 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP  146 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh
Confidence            34566778888999999999999999999999873      23356789999999999999999999999997633

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.00  E-value=7.5e-05  Score=50.42  Aligned_cols=79  Identities=15%  Similarity=0.066  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHhC--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +++++..+....  +.+....++..+|.++...|++++|+..+++++.....      ...++..++.++...|++++|+
T Consensus       106 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~  179 (899)
T TIGR02917       106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR------SLYAKLGLAQLALAENRFDEAR  179 (899)
T ss_pred             HHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHHCCCHHHHH
Confidence            345555554332  44555666777777777777788887777776653211      1123344444444444444444


Q ss_pred             HHHHHHH
Q psy10736         83 DYHLRHL   89 (104)
Q Consensus        83 ~~~~~a~   89 (104)
                      ..+++++
T Consensus       180 ~~~~~~~  186 (899)
T TIGR02917       180 ALIDEVL  186 (899)
T ss_pred             HHHHHHH
Confidence            4444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.99  E-value=6.5e-05  Score=50.29  Aligned_cols=64  Identities=14%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ...++..+|.++...|++++|+.++++++....   +   ...++.++|.++...|++++|+..++++++
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P---~---~~~a~~~La~~l~~~G~~~eA~~~l~~al~  346 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP---D---LPYVRAMYARALRQVGQYTAASDEFVQLAR  346 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345566666777777777777777666665411   1   123344555566666666666665555554

>KOG2002|consensus

Probab=97.99  E-value=1.9e-05  Score=53.81  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             CchhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      .++.+|+.++. .+...|.-+.+-+.+|.+....|++.+|.+.|.+..+...+..+      ++.|+|.+|..+|+|..|
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d------v~lNlah~~~e~~qy~~A  699 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED------VWLNLAHCYVEQGQYRLA  699 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc------eeeeHHHHHHHHHHHHHH
Confidence            46788888765 34556677888999999999999999999999998876654433      567999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy10736         82 IDYHLRHLIIAQQLMD   97 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~   97 (104)
                      ++.|+.++..+-...+
T Consensus       700 IqmYe~~lkkf~~~~~  715 (1018)
T KOG2002|consen  700 IQMYENCLKKFYKKNR  715 (1018)
T ss_pred             HHHHHHHHHHhcccCC
Confidence            9999999987664433

>KOG1585|consensus

Probab=97.98  E-value=0.00046  Score=41.01  Aligned_cols=84  Identities=7%  Similarity=-0.087  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .|-.+.+..|-.-+..|....++++|...+.++.+..+.....+-.+.++-..+........+.++..+++++..++...
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            45566778888889999999999999999999999888888888888899999999999999999999999999999988


Q ss_pred             cchh
Q psy10736         96 MDRV   99 (104)
Q Consensus        96 ~~~~   99 (104)
                      |.+.
T Consensus       105 Gspd  108 (308)
T KOG1585|consen  105 GSPD  108 (308)
T ss_pred             CCcc
Confidence            8764

>KOG1125|consensus

Probab=97.94  E-value=3.6e-05  Score=49.87  Aligned_cols=68  Identities=21%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...+...||..|...|+|++|+++|+.||..      .+.-...++.+|-++..-.+..+|+..|++|+++...
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~  496 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG  496 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence            3566789999999999999999999999875      2222367889999999999999999999999988543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.93  E-value=0.00016  Score=49.75  Aligned_cols=78  Identities=15%  Similarity=0.095  Sum_probs=65.8

Q ss_pred             HHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736          9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ..++...++.+..-.++..+|.+|..+|+.++|...+++++.+-      +.-+.+++++|..|... +.++|+.++.+|
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            34556666666667799999999999999999999999998873      23357899999999999 999999999999


Q ss_pred             HHHHH
Q psy10736         89 LIIAQ   93 (104)
Q Consensus        89 ~~~~~   93 (104)
                      +..+-
T Consensus       176 V~~~i  180 (906)
T PRK14720        176 IYRFI  180 (906)
T ss_pred             HHHHH
Confidence            87654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.93  E-value=0.00051  Score=40.76  Aligned_cols=69  Identities=12%  Similarity=-0.008  Sum_probs=51.5

Q ss_pred             chhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736          4 QPNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL   75 (104)
Q Consensus         4 ~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   75 (104)
                      -+++|+..++..    +..+....+...+|.++...+++++|+.++++.+.......+   ...+++.+|.++...
T Consensus        47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~a~Y~~g~~~~~~  119 (243)
T PRK10866         47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVLYMRGLTNMAL  119 (243)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHHHHHHHHHhhhhc
Confidence            355666655443    556777788899999999999999999999998877655544   346778888775443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.93  E-value=8.4e-05  Score=49.77  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=48.2

Q ss_pred             HHHHHHhHHHHHHhccHHH----HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQA----ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++..+|.++...|++++    |+..+++++.+..      ....++.++|.++...|++++|+..+++++++..
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P  315 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP  315 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4556677777777777775    6777777665421      2246778889999999999999999998887643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.93  E-value=6e-05  Score=30.59  Aligned_cols=31  Identities=35%  Similarity=0.486  Sum_probs=28.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      .++..+|.++...|++++|+.++++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5788999999999999999999999998753

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.92  E-value=9.4e-05  Score=52.38  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      +++|+..+++. ...+....++..+|.++...|++++|+.+++++++...
T Consensus       285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p  334 (1157)
T PRK11447        285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP  334 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            45555555433 22233456788999999999999999999999887643

>KOG1155|consensus

Probab=97.91  E-value=7.2e-05  Score=47.75  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=54.3

Q ss_pred             hHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---------------------------
Q psy10736          6 NDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---------------------------   57 (104)
Q Consensus         6 ~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------------------   57 (104)
                      ++|+..++ .+.-.+....++.-+|.-|..+.+.+.|++.|++|+++.+..-.                           
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            34444443 22334445555666666677777777777777766665322110                           


Q ss_pred             -hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         58 -RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        58 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                       .+.-.+.+..+|.+|...++.++|+.+|..++.....
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence             0111235668899999999999999999998865443

>KOG2003|consensus

Probab=97.89  E-value=0.00043  Score=44.60  Aligned_cols=81  Identities=19%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             hhHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++++.+.+ +.+++...-..+++++|..+..+|++++|+++|-+...+...      -+..+..++++|..+.+..+|++
T Consensus       506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHH
Confidence            45666544 455677777888999999999999999999999998777543      35678899999999999999999


Q ss_pred             HHHHHHHH
Q psy10736         84 YHLRHLII   91 (104)
Q Consensus        84 ~~~~a~~~   91 (104)
                      ++.++-.+
T Consensus       580 ~~~q~~sl  587 (840)
T KOG2003|consen  580 LLMQANSL  587 (840)
T ss_pred             HHHHhccc
Confidence            99877543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.88  E-value=0.0001  Score=43.60  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      ...+...|......|++..|+..++++....      +.-+.+++.+|.+|...|++++|..-|.+++++....+
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p  168 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLA------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP  168 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhccC------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence            3344558899999999999999999987652      22346789999999999999999999999999875443

>PRK12370 invasion protein regulator; Provisional

Probab=97.88  E-value=0.0001  Score=48.47  Aligned_cols=80  Identities=10%  Similarity=-0.105  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...|....++..+|.++...|++++|+..+++++.+...  ++    .....++.++...|++++|+.
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~----~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RA----AAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--Ch----hhHHHHHHHHHhccCHHHHHH
Confidence            34555544332 222334556788899999999999999999998775221  11    112223334444556666666


Q ss_pred             HHHHHHH
Q psy10736         84 YHLRHLI   90 (104)
Q Consensus        84 ~~~~a~~   90 (104)
                      .+++++.
T Consensus       428 ~~~~~l~  434 (553)
T PRK12370        428 LGDELRS  434 (553)
T ss_pred             HHHHHHH
Confidence            6555543

>KOG1586|consensus

Probab=97.87  E-value=0.0005  Score=40.55  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHh-ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +.+++++++...|.....+.-+..+|.+|-.- .+++.|+.+|+++-+.++..........++.-.+..-...++|.+|+
T Consensus        95 cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai  174 (288)
T KOG1586|consen   95 CLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI  174 (288)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777777888776544 78899999999999888766655556677777788778889999999


Q ss_pred             HHHHHHHHH
Q psy10736         83 DYHLRHLII   91 (104)
Q Consensus        83 ~~~~~a~~~   91 (104)
                      +.|++....
T Consensus       175 ~iyeqva~~  183 (288)
T KOG1586|consen  175 DIYEQVARS  183 (288)
T ss_pred             HHHHHHHHH
Confidence            998887643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.86  E-value=8e-05  Score=36.78  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=39.4

Q ss_pred             hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         35 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        35 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      .|+++.|+.++++.++....  ++  ....+..+|.+++..|++++|+..+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            58999999999998876543  22  334667799999999999999999988

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.85  E-value=0.00012  Score=49.31  Aligned_cols=66  Identities=8%  Similarity=-0.122  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      |....+..+++.+....+++++|+..++++++.      .+....+++.+|.++...|++++|...|++++.
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            334455556666666666666666666665544      122346788999999999999999999999986

>KOG0548|consensus

Probab=97.85  E-value=0.00021  Score=46.17  Aligned_cols=68  Identities=22%  Similarity=0.286  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      |.-+..|.|.+.+|...+++..|+..++.++++      .+....++..-|.++..+.+|.+|++.|++++++-
T Consensus       389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455666666777777777777776666666655      22234555666666666666777777776666543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.85  E-value=0.00017  Score=40.15  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=48.8

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .+.+..||.++...+++++|+..|..+..+..  +||.    ..+..|.++...|+...|+..|+.+++
T Consensus        71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~----p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYR----PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCC----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            44578888888888999999998888766543  3332    256788889999999999999888876

>KOG1173|consensus

Probab=97.83  E-value=3.5e-05  Score=49.94  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=60.6

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...++.+|.+....+.+.+|..+++.++...+...+... ..-...|+|.++...+.+.+|+.++++++.+..+.
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            345788888989899999999999999977776654332 34468899999999999999999999999876544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.82  E-value=0.00039  Score=41.82  Aligned_cols=74  Identities=24%  Similarity=0.296  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--------------CChHH---H-----------HHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--------------GDRAV---E-----------AQACYSLG   69 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~---~-----------~~~~~~l~   69 (104)
                      .+.....+..+|.++...|++++|+..+++++......              ++...   .           ...+..+|
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            34456677888888889999999999999888764221              11100   0           01234677


Q ss_pred             HHHHHhCChhHHHHHHHHHHHH
Q psy10736         70 NTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        70 ~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .++...|++++|+.++++++..
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHhccccccccccccccccccc
Confidence            8888888888888888887653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.82  E-value=0.00038  Score=37.89  Aligned_cols=71  Identities=18%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             chhHHHHHHHHhC----CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10736          4 QPNDRLKIAREFG----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD   77 (104)
Q Consensus         4 ~~~~a~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   77 (104)
                      .|.+|++.++.+.    -.+....+...++.+|...+++++|+..+++.+.+...+.+   .-.+++..|.++..+.+
T Consensus        25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccHHHHHHHHHHHHHhh
Confidence            4566666665553    33455677888889999999999999999888777655544   33677788888777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.81  E-value=0.00016  Score=49.26  Aligned_cols=28  Identities=14%  Similarity=-0.015  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +..+|.++...|++++|+..+++++++.
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~~  146 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPRA  146 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4445555555666666666666555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.80  E-value=0.00023  Score=50.49  Aligned_cols=68  Identities=12%  Similarity=0.074  Sum_probs=41.0

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .++..+|.++...|++++|++++++++............+..+..+|.++...|++++|+..|++++.
T Consensus       672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34555666666667777777766666554332221112234455567777777777777777777764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.79  E-value=0.00035  Score=41.93  Aligned_cols=69  Identities=13%  Similarity=-0.001  Sum_probs=53.7

Q ss_pred             HHHHHhHHHH-HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSH-IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        23 ~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...+..+... ...|++++|+..|++.+.....   ......+++.+|.+|+..|++++|+..|++++..+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            4556666665 5568999999999987766543   3334578899999999999999999999999876543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.78  E-value=0.00017  Score=48.76  Aligned_cols=29  Identities=21%  Similarity=0.144  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .++..+|.++...|++++|+..|+++++.
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            34556666666666666666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.78  E-value=0.0002  Score=33.49  Aligned_cols=48  Identities=21%  Similarity=0.226  Sum_probs=38.8

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      -+++|+..+++. ...+....++..+|.++...|++++|+.+++++++.
T Consensus        12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen   12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            366777766544 455778899999999999999999999999998865

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.77  E-value=0.00053  Score=37.35  Aligned_cols=72  Identities=17%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      ..++.-|......|+|++|+..++....-   .......-.+...++.+|+..+++.+|+..+++.+++...+.+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r---yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR---YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            45677888889999999999988775433   2223333478899999999999999999999999998776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00066  Score=41.80  Aligned_cols=44  Identities=18%  Similarity=0.043  Sum_probs=24.8

Q ss_pred             chhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKR   47 (104)
Q Consensus         4 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   47 (104)
                      ++++|..++..+-| +...-.++..+-.+|....++++|++..++
T Consensus       122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~  166 (389)
T COG2956         122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAER  166 (389)
T ss_pred             hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34555555555554 445555555556666666666666655554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.76  E-value=0.00016  Score=43.46  Aligned_cols=87  Identities=21%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +++|+.++...=........+.....++...++++++.+.+.++.....    .......+..+|.++...|++++|+..
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA----APDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4455555543322222334455566678888999999998888663211    122346778899999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy10736         85 HLRHLIIAQQL   95 (104)
Q Consensus        85 ~~~a~~~~~~~   95 (104)
                      +++++++.+..
T Consensus       169 ~~~al~~~P~~  179 (280)
T PF13429_consen  169 YRKALELDPDD  179 (280)
T ss_dssp             HHHHHHH-TT-
T ss_pred             HHHHHHcCCCC
Confidence            99999887653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00077  Score=41.52  Aligned_cols=81  Identities=17%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHh------CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736          5 PNDRLKIAREF------GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus         5 ~~~a~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      +++|++.++++      .....++.+|-.++..+....+.+.|...+.++++.-++      -+++-..+|.+....|++
T Consensus       157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y  230 (389)
T COG2956         157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDY  230 (389)
T ss_pred             HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccch
Confidence            45677666533      234557788888888888888888888888888776333      235666789999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy10736         79 PTAIDYHLRHLII   91 (104)
Q Consensus        79 ~~A~~~~~~a~~~   91 (104)
                      ++|++.++.+++.
T Consensus       231 ~~AV~~~e~v~eQ  243 (389)
T COG2956         231 QKAVEALERVLEQ  243 (389)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887764

>KOG4234|consensus

Probab=97.75  E-value=0.00015  Score=41.89  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..+..-|+-+...|+|++|..-|..|++++..... -..+.++.|.|.++..++.++.|+..+.+++++-.
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p  165 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP  165 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence            4555677789999999999999999999999876543 34567889999999999999999999999998754

>KOG2076|consensus

Probab=97.73  E-value=0.00011  Score=49.86  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      +......+..++..+...|.+.+|++++......     +++.....++.+|.+|..+|.+++|+++|++++.+....
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~  482 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN  482 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            5556667777777777777777777777654332     122224566677777777777777777777777665443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.72  E-value=0.00051  Score=46.90  Aligned_cols=65  Identities=9%  Similarity=-0.013  Sum_probs=49.8

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..++..++..+...|++++|++.+++++....  ++    ..++..+|.++...|++++|+..+++++++.
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GN----QGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            45667788888888999999999888765521  11    3577888888888888888888888888764

>KOG0548|consensus

Probab=97.72  E-value=0.00016  Score=46.63  Aligned_cols=81  Identities=20%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             hhHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      |..++.++ +.+...+.-...|.|.+.+|...|+|++|+.-..+.+++      .+..+..|...|..+...|+|++|+.
T Consensus        18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy~r~Gaa~~~lg~~~eA~~   91 (539)
T KOG0548|consen   18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGYSRKGAALFGLGDYEEAIL   91 (539)
T ss_pred             HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHHHHhHHHHHhcccHHHHHH
Confidence            44455433 444544557778999999999999999999988887665      33446789999999999999999999


Q ss_pred             HHHHHHHH
Q psy10736         84 YHLRHLII   91 (104)
Q Consensus        84 ~~~~a~~~   91 (104)
                      .|.+.++.
T Consensus        92 ay~~GL~~   99 (539)
T KOG0548|consen   92 AYSEGLEK   99 (539)
T ss_pred             HHHHHhhc
Confidence            99999865

>KOG2076|consensus

Probab=97.69  E-value=0.00036  Score=47.55  Aligned_cols=81  Identities=22%  Similarity=0.331  Sum_probs=63.6

Q ss_pred             CchhHHHHHHHHhCCHHH--HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          3 VQPNDRLKIAREFGDKAA--ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      ..|..|+.+...+-+.+.  .+..++.+|.++...|.+++|+++|.+++.....      ...+...|+.++..+|+.++
T Consensus       428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~------~~D~Ri~Lasl~~~~g~~Ek  501 (895)
T KOG2076|consen  428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD------NLDARITLASLYQQLGNHEK  501 (895)
T ss_pred             ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------chhhhhhHHHHHHhcCCHHH
Confidence            357788888776644433  3558999999999999999999999999876332      23567889999999999998


Q ss_pred             HHHHHHHHH
Q psy10736         81 AIDYHLRHL   89 (104)
Q Consensus        81 A~~~~~~a~   89 (104)
                      |.+.+...+
T Consensus       502 alEtL~~~~  510 (895)
T KOG2076|consen  502 ALETLEQII  510 (895)
T ss_pred             HHHHHhccc
Confidence            888776544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.67  E-value=0.00095  Score=38.49  Aligned_cols=85  Identities=20%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR----   76 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----   76 (104)
                      |.+|+..++.+    +..+....+...+|.++...|+++.|+..+++.+........   ...+++.+|.++....    
T Consensus        21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~A~Y~~g~~~~~~~~~~~   97 (203)
T PF13525_consen   21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADYALYMLGLSYYKQIPGIL   97 (203)
T ss_dssp             HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhhHHHHHHHHHHHhCccch
Confidence            55666555444    456677888999999999999999999999998876555443   4467777787766542    


Q ss_pred             ----C---hhHHHHHHHHHHHHH
Q psy10736         77 ----D---YPTAIDYHLRHLIIA   92 (104)
Q Consensus        77 ----~---~~~A~~~~~~a~~~~   92 (104)
                          |   ..+|...|+..+..+
T Consensus        98 ~~~~D~~~~~~A~~~~~~li~~y  120 (203)
T PF13525_consen   98 RSDRDQTSTRKAIEEFEELIKRY  120 (203)
T ss_dssp             -TT---HHHHHHHHHHHHHHHH-
T ss_pred             hcccChHHHHHHHHHHHHHHHHC
Confidence                2   235555665555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.00031  Score=41.91  Aligned_cols=66  Identities=18%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .++.+.-+...|+|..|...|...+.   ...+......+++.||.+++.+|+++.|...|..+..-+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~---~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIK---KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            78889999999999999999987554   4444555678999999999999999999999988776443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.63  E-value=0.00071  Score=42.39  Aligned_cols=80  Identities=19%  Similarity=0.133  Sum_probs=63.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736          7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus         7 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      .+......+++.+   ..+..+|..+...+.+.+|..+++.+++.-.       .+..+..+|.++...|+..+|.+..+
T Consensus       316 ~~e~~l~~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-------s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         316 AAEKWLKQHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLRP-------SASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             HHHHHHHhCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-------ChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            3344566677666   5688899999999999999999998776522       23567889999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy10736         87 RHLIIAQQLM   96 (104)
Q Consensus        87 ~a~~~~~~~~   96 (104)
                      +++-+....+
T Consensus       386 e~L~~~~~~~  395 (400)
T COG3071         386 EALLLTRQPN  395 (400)
T ss_pred             HHHHHhcCCC
Confidence            9996665543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.62  E-value=4.4e-05  Score=31.34  Aligned_cols=32  Identities=38%  Similarity=0.517  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736         45 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus        45 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      |++++++-      +.-+.+++++|.+|...|++++|+
T Consensus         2 y~kAie~~------P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN------PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45565552      223467889999999999888875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.61  E-value=0.0014  Score=37.10  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             chhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccH---HHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhC--
Q psy10736          4 QPNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEY---QAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLR--   76 (104)
Q Consensus         4 ~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g--   76 (104)
                      +|+++.+.++. ....|.....+++-|.++..+.++   .++...++.++.-++.. .-.+....+++++|++|...+  
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            45566655544 222334466666666666665443   45666777766655532 112233478899999988764  


Q ss_pred             --ChhHHHHHHHHHHHHHHH
Q psy10736         77 --DYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        77 --~~~~A~~~~~~a~~~~~~   94 (104)
                        +..+|..+|+++.+.+++
T Consensus        86 ~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHH
Confidence              455677777777766654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.61  E-value=0.0012  Score=36.88  Aligned_cols=76  Identities=11%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ...+-+.......+..|.-....|++++|...|+-.. +. ...+    ..-+..||.++..++++++|+..|-.+..+.
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-~~-d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLC-IY-DFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4456667778889999999999999999999886532 21 1122    2346899999999999999999999998765


Q ss_pred             HH
Q psy10736         93 QQ   94 (104)
Q Consensus        93 ~~   94 (104)
                      ..
T Consensus       102 ~~  103 (165)
T PRK15331        102 KN  103 (165)
T ss_pred             cC
Confidence            43

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.60  E-value=0.00012  Score=29.34  Aligned_cols=28  Identities=39%  Similarity=0.567  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +++.+|.++...|++++|+..|++.+..
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3455556665666666666666555543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.59  E-value=0.00065  Score=43.03  Aligned_cols=65  Identities=22%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+..+|..+...+++++|.+++++++...     |.  ...+..++.++...|+.++|..+|++++.+..
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-----P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR-----PD--AYDYAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4567888999999999999999999988752     11  13456899999999999999999999988753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.56  E-value=0.00025  Score=33.48  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhc-cHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVL   51 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~   51 (104)
                      +.+|+..+.+. .-.+....++.++|.++...| ++++|+.++++++.+
T Consensus        19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen   19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            44555444322 222345668999999999999 899999999999875

...

>KOG1129|consensus

Probab=97.55  E-value=0.00078  Score=41.76  Aligned_cols=62  Identities=8%  Similarity=-0.100  Sum_probs=38.0

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+..++.+|....+++.|+..+.+.++.+      +..+..+..++.++..++++++|.++|+.++++
T Consensus       258 TfllLskvY~ridQP~~AL~~~~~gld~f------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~  319 (478)
T KOG1129|consen  258 TFLLLSKVYQRIDQPERALLVIGEGLDSF------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL  319 (478)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhhhhhcC------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence            34444444444444444444444443332      223456778888888888888888888888765

>KOG0547|consensus

Probab=97.51  E-value=0.0003  Score=45.39  Aligned_cols=72  Identities=10%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh----------------------------HHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR----------------------------AVEAQACYSLGNTYTL   74 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~   74 (104)
                      .+|+..|..+...+++++|+.-|++++.+-...-.+                            +....++...|.++..
T Consensus       395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD  474 (606)
T KOG0547|consen  395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD  474 (606)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence            446666666666666666666666665542111100                            0112345566777777


Q ss_pred             hCChhHHHHHHHHHHHHHHH
Q psy10736         75 LRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        75 ~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ++++++|++.|++|+++-+.
T Consensus       475 qqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  475 QQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHhHHHHHHHHHHHHhhccc
Confidence            77888888888888777654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0012  Score=40.02  Aligned_cols=76  Identities=21%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-------------------------------CChHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-------------------------------GDRAVEAQACYS   67 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------------------------------~~~~~~~~~~~~   67 (104)
                      |..+..+..||.+|...|++..|...|.+++.+..+.                               ...+....+++.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            3446667889999999999999999999988753211                               111223457889


Q ss_pred             HHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         68 LGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        68 l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +|..++..|++.+|...++..+.....
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999876543

>KOG0543|consensus

Probab=97.48  E-value=0.0016  Score=41.05  Aligned_cols=71  Identities=21%  Similarity=0.335  Sum_probs=57.0

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC--C-------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG--D-------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+.-...-|+.+...|+|..|...|++++..+....  +       ......++.|++.++..+++|..|+.++.+++++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            344566778999999999999999999988775221  1       1223568899999999999999999999999965

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.47  E-value=0.00031  Score=30.37  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=13.3

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLV   50 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~   50 (104)
                      +..+|..|...|++++|++.++++++
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555555555555555555444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.46  E-value=0.00049  Score=29.75  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ++..+|..|...|++++|++.|+++++.....
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            57789999999999999999999999997644

>KOG0551|consensus

Probab=97.45  E-value=0.0027  Score=39.30  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .-+++.-.+..+..-|+-|....+|..|+..|.++|  .++.+|+...+..|.|.+-+....|+|..++..+.+++.+
T Consensus        73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Gl--k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGL--KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH--hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345666677777788888888888888888888864  4577777777788888888888888888888877777654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.45  E-value=0.0047  Score=33.55  Aligned_cols=74  Identities=18%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH-Hhcch
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDR   98 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~   98 (104)
                      ....++..++..+...|++++|+..+++++..-     |. --.++..+-.+|...|+...|+..|+++..... ..|..
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----P~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALD-----PY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----TT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            445677888888999999999999999988762     22 225677788899999999999999999987666 44544


Q ss_pred             h
Q psy10736         99 V   99 (104)
Q Consensus        99 ~   99 (104)
                      .
T Consensus       134 P  134 (146)
T PF03704_consen  134 P  134 (146)
T ss_dssp             -
T ss_pred             c
Confidence            3

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.42  E-value=0.00077  Score=26.85  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +++.+|.++...|++++|++.+++.+..
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6789999999999999999999998764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.39  E-value=0.00089  Score=28.17  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .++..+|.+....++|.+|+.-|++++++.+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            356778888888888888888888888887765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK11906 transcriptional regulator; Provisional

Probab=97.37  E-value=0.0016  Score=41.85  Aligned_cols=70  Identities=9%  Similarity=-0.022  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+.-..++..+|.+....++++.|...+++|+.+      .+..+.+++..|.+....|+.++|.+.+++++++..
T Consensus       334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence            3445678889999999999999999999999887      445578889999999999999999999999987653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.33  E-value=0.012  Score=38.28  Aligned_cols=54  Identities=19%  Similarity=0.194  Sum_probs=32.8

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      ....+++.++.++..+.+|++|.+++.+..+.     +.|..+...+..|.++...|+.
T Consensus       303 l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  303 LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccc
Confidence            34555666677777777777776666654432     2344455555666666777766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.31  E-value=0.0022  Score=40.76  Aligned_cols=56  Identities=21%  Similarity=0.200  Sum_probs=25.8

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      +...+..+...++++.|+...+++...      .+....++..|+.+|...|+++.|+-.+.
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            333344444444444444444444433      12223444555555555555555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.30  E-value=0.0071  Score=32.20  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=57.8

Q ss_pred             HHHHHHHhHHHHHH--hccHHHHHHHHHHHHHHHHHhCCh-----H-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIF--LGEYQAASEHYKRTLVLAQDLGDR-----A-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+.+|..|+.....  -|-|++|...+.++.++.+.....     . --+.++..|+.++...|+|++++...++++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            45566666655444  478999999999999998865431     1 136788899999999999999999999999988


Q ss_pred             HHhcch
Q psy10736         93 QQLMDR   98 (104)
Q Consensus        93 ~~~~~~   98 (104)
                      .+.|+.
T Consensus        86 NRRGEL   91 (144)
T PF12968_consen   86 NRRGEL   91 (144)
T ss_dssp             HHH--T
T ss_pred             hhcccc
Confidence            877654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1129|consensus

Probab=97.27  E-value=0.00046  Score=42.71  Aligned_cols=66  Identities=17%  Similarity=0.111  Sum_probs=42.5

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+..++|+|.+....||+.-|.++++-++..      ....+.+++|+|.+-...|+..+|..++..+-.+.
T Consensus       394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             hhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            3555666666666666666666655554422      12235677888888888888888888887766544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.26  E-value=0.004  Score=37.11  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=61.2

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      -...+++-|......|++++|+.+++...  .+....++. -.+...++.++...+++.+|+...++.+.+....++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            45678889999999999999999998754  333334444 5788999999999999999999999999988776554

>smart00028 TPR Tetratricopeptide repeats

Probab=97.23  E-value=0.00075  Score=26.02  Aligned_cols=28  Identities=43%  Similarity=0.719  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ++..+|.++...|++++|..++++++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4567777788888888888888777654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=97.16  E-value=0.0073  Score=29.60  Aligned_cols=67  Identities=22%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      |.-.+...+.++|+....+++....   ++.....++..+..+|...|++.+.+++...=++++...++|
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            4445577788999999988766544   344566788899999999999999999999999999988776

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>smart00028 TPR Tetratricopeptide repeats

Probab=97.12  E-value=0.0017  Score=24.95  Aligned_cols=29  Identities=45%  Similarity=0.651  Sum_probs=25.6

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .++..+|.++...++++.|+.++++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45788999999999999999999998764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2376|consensus

Probab=97.12  E-value=0.013  Score=38.99  Aligned_cols=71  Identities=15%  Similarity=0.057  Sum_probs=58.2

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh---CCh------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL---GDR------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      --..++|.+-++...|+|.+|++.+++++.++++.   ++.      .....+...++.++..+|+.++|...|...+..
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            34568889999999999999999999998888753   111      234668889999999999999999999887743

>KOG0551|consensus

Probab=97.11  E-value=0.004  Score=38.63  Aligned_cols=76  Identities=17%  Similarity=0.283  Sum_probs=63.0

Q ss_pred             HHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ....+|+...+.+|.|.+.+....|+|..|+.-+.+++.+      .+....+++.-+.++.....+.+|..++++.+.+
T Consensus       109 k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  109 KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            3567899999999999999999999999999999888765      3445677788888888888888888888877655


Q ss_pred             HH
Q psy10736         92 AQ   93 (104)
Q Consensus        92 ~~   93 (104)
                      ..
T Consensus       183 d~  184 (390)
T KOG0551|consen  183 DD  184 (390)
T ss_pred             hH
Confidence            43

>KOG4648|consensus

Probab=97.10  E-value=0.00086  Score=41.85  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=40.1

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +...|+.|..+|.|++|+++|.++++.....      ...+.|.+.+|+....+..|+..+..++.+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaL  160 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFAQAEEDCEAAIAL  160 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            4667889999999999999999987753211      123445555555555565555555555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.10  E-value=0.0031  Score=43.60  Aligned_cols=24  Identities=8%  Similarity=0.041  Sum_probs=11.9

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHH
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLV   50 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~   50 (104)
                      .+|.++...|++++|++.++++++
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~  130 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLK  130 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334455555555555555555443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.10  E-value=0.014  Score=34.86  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=53.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        36 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      ......++.+.+|++.+++.+.......+...+|..|...|++++|..+++.+...+.+.+-
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW  213 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW  213 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc
Confidence            34567789999999999988887777888899999999999999999999999877766544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.10  E-value=0.0073  Score=39.30  Aligned_cols=68  Identities=18%  Similarity=0.178  Sum_probs=54.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ...+...|..+...|+.++|++.+++++..-.  .-+.....+++.+++++..+.+|++|.+++.+..+.
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            44577789999999999999999999884322  223334578999999999999999999999877653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.02  E-value=0.0015  Score=39.88  Aligned_cols=79  Identities=24%  Similarity=0.240  Sum_probs=49.3

Q ss_pred             CchhHHHHHHHHhCCH-HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH-
Q psy10736          3 VQPNDRLKIAREFGDK-AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT-   80 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-   80 (104)
                      +.+++|.-+++...+. +.....++.++.++..+|++++|.+.+.+++..  ..++    ..++.|+..+....|+..+ 
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~----~d~LaNliv~~~~~gk~~~~  254 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPND----PDTLANLIVCSLHLGKPTEA  254 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCH----HHHHHHHHHHHHHTT-TCHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCC----HHHHHHHHHHHHHhCCChhH
Confidence            3456666666666544 334566788888888889999998888887542  1122    3466788888888888744 


Q ss_pred             HHHHHHH
Q psy10736         81 AIDYHLR   87 (104)
Q Consensus        81 A~~~~~~   87 (104)
                      +.+++.+
T Consensus       255 ~~~~l~q  261 (290)
T PF04733_consen  255 AERYLSQ  261 (290)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162|consensus

Probab=96.99  E-value=0.022  Score=38.90  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             HHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH--------------HHhCChHH---------------
Q psy10736         10 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--------------QDLGDRAV---------------   60 (104)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~---------------   60 (104)
                      .+.+.....+.....|+-.|..+...|.+++|.+.|..++.+-              -+.|++..               
T Consensus       672 CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp  751 (799)
T KOG4162|consen  672 CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP  751 (799)
T ss_pred             HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence            3455555667778888889999999999999999999877642              12232211               


Q ss_pred             -HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         61 -EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        61 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                       --.+++++|.++...|+.++|.++|+.|+++-...+
T Consensus       752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence             123788999999999999999999999998866543

>KOG2003|consensus

Probab=96.96  E-value=0.0026  Score=41.18  Aligned_cols=62  Identities=29%  Similarity=0.360  Sum_probs=42.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .++.+-|++-...|++++|.+.|.+++.      +...-..+++++|..+..+|+.++|+++|-+.-.
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~  552 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHA  552 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence            3445555555556666666666666543      1223357889999999999999999999866543

>KOG2471|consensus

Probab=96.95  E-value=0.0017  Score=42.27  Aligned_cols=95  Identities=19%  Similarity=0.130  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHhCCHHH----------HHHHHHHhHHHHHHhccHHHHHHHHHHHHH-HHHHhCCh-----------HHHH
Q psy10736          5 PNDRLKIAREFGDKAA----------ERRANSNLGNSHIFLGEYQAASEHYKRTLV-LAQDLGDR-----------AVEA   62 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~-----------~~~~   62 (104)
                      +.+|+++.-..+....          ...+.+|+|-++...|.|.-+..+|.+++. ...+....           ....
T Consensus       256 ~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~  335 (696)
T KOG2471|consen  256 HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM  335 (696)
T ss_pred             hHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence            5566666554443221          334568999999999999999999999996 44332111           1235


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      .+++|.|..|...|++..|.++|.++...+...+..|
T Consensus       336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence            6889999999999999999999999999887765544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.95  E-value=0.0022  Score=24.46  Aligned_cols=23  Identities=17%  Similarity=-0.031  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      +..++|.++...|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566777777777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.90  E-value=0.03  Score=37.65  Aligned_cols=80  Identities=10%  Similarity=0.070  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHhHHHHH-HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         17 DKAAERRANSNLGNSHI-FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .+...+.+...+|.++. ...+++.|..++.+++.+.++.+.......+...++.++...+... |...+++.++.++..
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            56677888999988876 7789999999999999998885555555677777788888887666 999999998888774


Q ss_pred             cc
Q psy10736         96 MD   97 (104)
Q Consensus        96 ~~   97 (104)
                      +.
T Consensus       133 ~~  134 (608)
T PF10345_consen  133 GH  134 (608)
T ss_pred             Cc
Confidence            43

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0550|consensus

Probab=96.89  E-value=0.0032  Score=40.06  Aligned_cols=70  Identities=20%  Similarity=0.158  Sum_probs=57.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ......-|+-....|++..|.+.|..+|.+-...  ....+..|++++.+....|+..+|+..++.++.+-.
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            3445566777888899999999999999885553  334578999999999999999999999999886643

>PLN02789 farnesyltranstransferase

Probab=96.88  E-value=0.015  Score=36.11  Aligned_cols=29  Identities=14%  Similarity=0.085  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .++...+.++...|+++++++++.++++.
T Consensus       143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        143 HAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            46678888888889999999999998874

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.85  E-value=0.0082  Score=35.40  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .++..+..+...|..|-..|-..-|.--+.+++.+      .+....+++.+|..+...|+++.|.+.|+..+++
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL  128 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  128 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence            34556667777777777777777777777777766      3334566777777777777777777777777665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.83  E-value=0.011  Score=37.68  Aligned_cols=85  Identities=7%  Similarity=0.096  Sum_probs=63.8

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      .++.++.+++++.....  .....++.++...++-.+|++.+.+++..   ....   ...+...+..+...++++.|+.
T Consensus       184 ~~~~ai~lle~L~~~~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d---~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  184 RYDEAIELLEKLRERDP--EVAVLLARVYLLMNEEVEAIRLLNEALKE---NPQD---SELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             cHHHHHHHHHHHHhcCC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHhcCCHHHHHH
Confidence            46778888877643322  23455788888899999999999998833   2111   5667788999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy10736         84 YHLRHLIIAQQLM   96 (104)
Q Consensus        84 ~~~~a~~~~~~~~   96 (104)
                      ..+++..+....-
T Consensus       256 iAk~av~lsP~~f  268 (395)
T PF09295_consen  256 IAKKAVELSPSEF  268 (395)
T ss_pred             HHHHHHHhCchhH
Confidence            9999998876543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0624|consensus

Probab=96.81  E-value=0.01  Score=37.33  Aligned_cols=61  Identities=18%  Similarity=0.038  Sum_probs=35.7

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      +++..+.+|..+|+...|+.-+.+.+++      .+....+....|.++..+|++++|+..|+..+.
T Consensus        74 aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~  134 (504)
T KOG0624|consen   74 AIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ  134 (504)
T ss_pred             HHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence            3444444555555555554444444433      222345566777788888888888888777764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.038  Score=31.95  Aligned_cols=31  Identities=16%  Similarity=-0.077  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +...-..|+++...|+-.+|...|+++++..
T Consensus       159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         159 AIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            4455677999999999999999999998764

>KOG2300|consensus

Probab=96.79  E-value=0.023  Score=37.24  Aligned_cols=81  Identities=14%  Similarity=0.048  Sum_probs=68.7

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      ..+.+++.-|......+++.+|.....+.++++...+.-...+-.+.-+|.+....|+..++..-.+-+..++++..|..
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~  522 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP  522 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence            45666777788888889999999999999999866555555677788899999999999999999999999999998865


Q ss_pred             h
Q psy10736        100 G  100 (104)
Q Consensus       100 ~  100 (104)
                      .
T Consensus       523 v  523 (629)
T KOG2300|consen  523 V  523 (629)
T ss_pred             H
Confidence            4

>KOG4648|consensus

Probab=96.79  E-value=0.012  Score=37.02  Aligned_cols=83  Identities=10%  Similarity=-0.017  Sum_probs=64.1

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -|++|++.+... .-.+.-...+.|.+.+|.....+..|..-+..++.+-+      ....+|...+.+....|...+|.
T Consensus       112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~AR~~Lg~~~EAK  185 (536)
T KOG4648|consen  112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQARESLGNNMEAK  185 (536)
T ss_pred             chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHHHHHHhhHHHHH
Confidence            467778755433 33444566788999999999999999999999887733      34577888888888889999999


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      +.++.++++-
T Consensus       186 kD~E~vL~LE  195 (536)
T KOG4648|consen  186 KDCETVLALE  195 (536)
T ss_pred             HhHHHHHhhC
Confidence            9888888653

>KOG1128|consensus

Probab=96.77  E-value=0.0027  Score=42.83  Aligned_cols=64  Identities=23%  Similarity=0.229  Sum_probs=31.6

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ....+++.|.+....+++..|..+|.....+      .+....+++|++..|...++-.+|...++++++
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            3444444444444445555554444443332      122234555555555555555555555555554

>KOG3060|consensus

Probab=96.77  E-value=0.024  Score=34.13  Aligned_cols=66  Identities=15%  Similarity=0.155  Sum_probs=43.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---ChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---DYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~   93 (104)
                      ..+++.++..|...|+++.|.-++++.+-+  .    +.....+..+|.+++-.|   +...|..+|.+++++..
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLI--Q----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--C----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            556777888888888888888888876543  1    112234555566655554   45667778888877765

>KOG1156|consensus

Probab=96.76  E-value=0.021  Score=38.40  Aligned_cols=69  Identities=10%  Similarity=-0.046  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+....+++..++.-+-..|+++.|..+++.|++.      .++....+..-|.++...|++++|..+++++-++
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence            56678899999999999999999999999999876      5667778888899999999999999999988654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.72  E-value=0.0074  Score=39.00  Aligned_cols=61  Identities=18%  Similarity=0.039  Sum_probs=39.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ....-.+.++...++.++|.+.+++++....      .......++|.++...|++++|+..++..+
T Consensus       341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P------~~~~l~~~~a~all~~g~~~eai~~L~~~~  401 (484)
T COG4783         341 YYLELAGDILLEANKAKEAIERLKKALALDP------NSPLLQLNLAQALLKGGKPQEAIRILNRYL  401 (484)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            3344556677777777777777777665421      112445677777777777777777776665

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.71  E-value=0.0096  Score=26.95  Aligned_cols=29  Identities=28%  Similarity=0.285  Sum_probs=24.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .+++.++..+...|++++|.++.+..+++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            46788899999999999999999988766

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.71  E-value=0.039  Score=36.51  Aligned_cols=93  Identities=12%  Similarity=0.021  Sum_probs=68.6

Q ss_pred             hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH------------------------------HH
Q psy10736          5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL------------------------------AQ   53 (104)
Q Consensus         5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------------~~   53 (104)
                      +++|++... .+..+|.....|...|.++...|++.+|.+.++.+..+                              +.
T Consensus       210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence            567777665 55666778899999999999999999999998876542                              11


Q ss_pred             HhC-Ch---HHH---HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         54 DLG-DR---AVE---AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        54 ~~~-~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      +.+ ++   ...   ++.....|.+|...|++..|+..|....+.+....+
T Consensus       290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            112 11   111   333446699999999999999999999998887643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.68  E-value=0.011  Score=24.86  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL   55 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~   55 (104)
                      .++..+|.+-...++|+.|+.-|++++++-++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999987664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.65  E-value=0.046  Score=31.05  Aligned_cols=73  Identities=18%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      .+.....++.++-.+....+++.....+..++.......++..........-|..+...++|.+|...|-.+.
T Consensus        68 ~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen   68 SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            4567788888888999999999999999999999998888877777778888889999999999999886664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.64  E-value=0.054  Score=31.75  Aligned_cols=61  Identities=23%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             hccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         35 LGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        35 ~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...+++|++.|.-|+-.....+ ++...+.++..++++|...|+.+....++++|++.+...
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a  151 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA  151 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            4578999999999998887655 455778999999999999999888888888888777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.62  E-value=0.017  Score=40.23  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=45.5

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+..++...|+.++|+.++++++    ...  +.....+..+|.++...|++++|++.|+++++....
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~----~p~--n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~  134 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ----SSM--NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT  134 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc----cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            55666777788888888888876    111  122345566688999999999999999999876543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.61  E-value=0.026  Score=27.71  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=40.3

Q ss_pred             HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh
Q psy10736         13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR   58 (104)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~   58 (104)
                      +...+++....++..+..+|...|.+.+.+.+..+=++++++.++|
T Consensus        34 ~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen   34 EKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            3446778888899999999999999999999999999999888775

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4814|consensus

Probab=96.60  E-value=0.028  Score=37.99  Aligned_cols=73  Identities=14%  Similarity=0.017  Sum_probs=60.1

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+...+++-+.......+|..++++|..++............+...-+++.+|....+.+.|.+++++|-+.-
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            4566788888889999999999999999987765544444457888899999999999999999999887543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.59  E-value=0.011  Score=27.98  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=38.0

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      -+++++...+.. .-.|.....+...|.++...|++++|+..++++++...
T Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen   10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            355666655443 23455777889999999999999999999999986543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.54  E-value=0.013  Score=41.04  Aligned_cols=87  Identities=10%  Similarity=-0.043  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-------------ChHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-------------DRAVEAQACYSLG   69 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~l~   69 (104)
                      -+++++.+++.. ...+....+++.+|.++...+++..+.-.  .+++.+....             +....-.++..+|
T Consensus        46 ~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA  123 (906)
T PRK14720         46 LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLA  123 (906)
T ss_pred             CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence            456677766533 35566778888888988888888777665  6555554333             2222235888999


Q ss_pred             HHHHHhCChhHHHHHHHHHHHHH
Q psy10736         70 NTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        70 ~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+|..+|++++|...|++++++-
T Consensus       124 ~~Ydk~g~~~ka~~~yer~L~~D  146 (906)
T PRK14720        124 EAYAKLNENKKLKGVWERLVKAD  146 (906)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcC
Confidence            99999999999999999999764

>KOG2376|consensus

Probab=96.50  E-value=0.053  Score=36.22  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=51.0

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHH------------------------HHhCC-hHHHHHHHHHHHHHHHHhCCh
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLA------------------------QDLGD-RAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------~~~~~-~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      ++.--|.+++..|+|++|++.|+....--                        +.... +...-..++|.+.++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            44556788889999999999998753210                        00010 111234678999999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q psy10736         79 PTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        79 ~~A~~~~~~a~~~~~~   94 (104)
                      .+|++.+++++.++..
T Consensus       192 ~qA~elL~kA~~~~~e  207 (652)
T KOG2376|consen  192 NQAIELLEKALRICRE  207 (652)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999777653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.49  E-value=0.0071  Score=22.98  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYK   46 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~   46 (104)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            357889999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3060|consensus

Probab=96.47  E-value=0.05  Score=32.81  Aligned_cols=28  Identities=21%  Similarity=0.158  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .++..++.+|...|++++|.-++++.+-
T Consensus       155 EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  155 EAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            4778999999999999999999999873

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.45  E-value=0.021  Score=36.87  Aligned_cols=48  Identities=17%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             chhHHHHHHHH-hC---CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIARE-FG---DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         4 ~~~~a~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      -|++|+..+++ +.   +......+++++|.+|..+|++++|++++++++++
T Consensus        90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46677776644 22   22222367999999999999999999999999986

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.41  E-value=0.073  Score=32.33  Aligned_cols=61  Identities=21%  Similarity=0.328  Sum_probs=51.1

Q ss_pred             HHhccHHHHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHH
Q psy10736         33 IFLGEYQAASEHYKRTLVLAQDLGDR---AVEAQACYSLGNTYTLLR-DYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        33 ~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~   94 (104)
                      ...|+++.|..++.|+-.... ..+|   ...+..+++.|.-....+ +++.|..++++++++...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~   68 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK   68 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence            457899999999999887764 3232   345888999999999999 999999999999999866

It is also involved in sporulation [].

>KOG3783|consensus

Probab=96.37  E-value=0.059  Score=35.57  Aligned_cols=77  Identities=21%  Similarity=0.080  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH-HHHhCChHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL-AQDLGDRAVEAQACYSLGNTYTLLRD-YPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~   93 (104)
                      |.....--+.-+|.+....|+...+..++....+- .+...+++....+++.+|..++..|. ..++..++.+|-+.+.
T Consensus       444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~  522 (546)
T KOG3783|consen  444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS  522 (546)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence            55556666777899999999999999999987754 44567788889999999999999999 9999999999887664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.36  E-value=0.034  Score=35.46  Aligned_cols=62  Identities=15%  Similarity=0.005  Sum_probs=35.2

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ...+.+....|+++.|..++.++.+..   .+..  .......+.++...|++++|+..+++..+..
T Consensus       122 llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~--~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~  183 (398)
T PRK10747        122 LLAAEAAQQRGDEARANQHLERAAELA---DNDQ--LPVEITRVRIQLARNENHAARHGVDKLLEVA  183 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC---Ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            333445577778888888877765421   1111  1112233666677777777777776666554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.36  E-value=0.0025  Score=29.86  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      -+.+|+.++++. ...|.-..+...++.++...|++++|...+.+.+..
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356777766654 223445667789999999999999999999886654

...

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.11  Score=32.08  Aligned_cols=70  Identities=17%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736          6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL   75 (104)
Q Consensus         6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   75 (104)
                      ++.+.-.+..+.......+..++|..|...++.+.+.+++.+.+.-+-..|-......+-..+|.+|..+
T Consensus        99 de~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          99 DERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence            3455555555556677889999999999999999999999998887777766655555556666666444

>KOG0495|consensus

Probab=96.29  E-value=0.013  Score=39.66  Aligned_cols=82  Identities=12%  Similarity=0.061  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      ++++..++.+.....+..+.++.-++....+++.++|++.+++++..+...      -..+..+|.++..+++.+.|.+.
T Consensus       634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHH
Confidence            455555555544444555667777778888899999999998888765432      25678899999999999999998


Q ss_pred             HHHHHHHH
Q psy10736         85 HLRHLIIA   92 (104)
Q Consensus        85 ~~~a~~~~   92 (104)
                      |...+..+
T Consensus       708 Y~~G~k~c  715 (913)
T KOG0495|consen  708 YLQGTKKC  715 (913)
T ss_pred             HHhccccC
Confidence            88776544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.28  E-value=0.0017  Score=26.53  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAAS   42 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~   42 (104)
                      |.-..+++++|.++...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445678999999999999999986

>PLN02789 farnesyltranstransferase

Probab=96.26  E-value=0.046  Score=33.98  Aligned_cols=70  Identities=14%  Similarity=0.027  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---CCh----hHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL---RDY----PTAIDYHLRHLII   91 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~a~~~   91 (104)
                      +.-..++.+.+.+....|+++++++++.++++.-...      ..+++..+.+....   |.+    ++++.+..+++.+
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~  212 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA  212 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence            3445678888889999999999999999988762221      24566777766654   323    4678888888876


Q ss_pred             HHH
Q psy10736         92 AQQ   94 (104)
Q Consensus        92 ~~~   94 (104)
                      ...
T Consensus       213 ~P~  215 (320)
T PLN02789        213 NPR  215 (320)
T ss_pred             CCC
Confidence            543

>KOG1174|consensus

Probab=96.25  E-value=0.054  Score=35.01  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=61.5

Q ss_pred             HHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHH
Q psy10736          7 DRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH   85 (104)
Q Consensus         7 ~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   85 (104)
                      +|..+++. +...|....+...++..+..-|.++.++..+++.+..+..       ...+..+|.++...+.+++|.++|
T Consensus       422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A~Ne~Q~am~~y  494 (564)
T KOG1174|consen  422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMRAQNEPQKAMEYY  494 (564)
T ss_pred             HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444432 2345667778888999999999999999999998766432       245778999999999999999999


Q ss_pred             HHHHHHH
Q psy10736         86 LRHLIIA   92 (104)
Q Consensus        86 ~~a~~~~   92 (104)
                      ..++.+-
T Consensus       495 ~~ALr~d  501 (564)
T KOG1174|consen  495 YKALRQD  501 (564)
T ss_pred             HHHHhcC
Confidence            9998653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.25  E-value=0.027  Score=25.49  Aligned_cols=28  Identities=29%  Similarity=0.209  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +++.++..+...|++.+|..+.+..+++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            5678999999999999999999998865

>KOG1128|consensus

Probab=96.24  E-value=0.025  Score=38.46  Aligned_cols=81  Identities=15%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +|++|.++.+...-     .+...+|......++++++..+++.++.+      .+....+++++|.+....++++.|.+
T Consensus       472 ~yEkawElsn~~sa-----rA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  472 LYEKAWELSNYISA-----RAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             HHHHHHHHhhhhhH-----HHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHH
Confidence            57777777765442     24555666677788999999999988877      34455778899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10736         84 YHLRHLIIAQQL   95 (104)
Q Consensus        84 ~~~~a~~~~~~~   95 (104)
                      .|..+..+-...
T Consensus       541 aF~rcvtL~Pd~  552 (777)
T KOG1128|consen  541 AFHRCVTLEPDN  552 (777)
T ss_pred             HHHHHhhcCCCc
Confidence            999888765443

>KOG1463|consensus

Probab=96.20  E-value=0.1  Score=32.83  Aligned_cols=88  Identities=14%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      .+.+.++++............-..+...|...++|.+|+......+.-+++..|....+..+..=.-+|+...+..+|..
T Consensus       110 l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~Kaka  189 (411)
T KOG1463|consen  110 LCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKA  189 (411)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHH
Confidence            35677888888888888888888899999999999999999999999999999988777777777788888888888877


Q ss_pred             HHHHHHHH
Q psy10736         84 YHLRHLII   91 (104)
Q Consensus        84 ~~~~a~~~   91 (104)
                      .+..|--.
T Consensus       190 sLTsART~  197 (411)
T KOG1463|consen  190 SLTSARTT  197 (411)
T ss_pred             HHHHHHHh
Confidence            76655433

>KOG0624|consensus

Probab=96.18  E-value=0.063  Score=33.95  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...+..+.-...+|..+...|++..|+..|..|++.     || ..-.+++..+.+|..+|+-..|+..+.+.+++...
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~-----dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD  104 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG-----DP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD  104 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-----Cc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence            344556667889999999999999999999888764     33 33467889999999999999999999999987544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.14  E-value=0.0063  Score=35.86  Aligned_cols=72  Identities=19%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      +.+...|....+++.+|..+...|+++.|.+.+...+++      .+.--.+..|.|..+..-|++.-|.+.+.+..+
T Consensus        90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence            444455667788999999999999999999999988776      222346778889999999999999888866653

>PRK10941 hypothetical protein; Provisional

Probab=96.10  E-value=0.055  Score=32.85  Aligned_cols=76  Identities=13%  Similarity=0.027  Sum_probs=60.2

Q ss_pred             HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ....+.....+.+.++=.++...++++.|+.+.+..+.+...  ++    .-.--.|.+|...|-+..|...++..++.+
T Consensus       172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE--DP----YEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            344566778899999999999999999999999998776322  22    223457999999999999999999888776


Q ss_pred             HH
Q psy10736         93 QQ   94 (104)
Q Consensus        93 ~~   94 (104)
                      ..
T Consensus       246 P~  247 (269)
T PRK10941        246 PE  247 (269)
T ss_pred             CC
Confidence            43

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.09  E-value=0.022  Score=38.78  Aligned_cols=61  Identities=8%  Similarity=-0.116  Sum_probs=38.1

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +..+...+...|+.+.|...+++.+++-      +.....+..+.++|...|++++|.+.+++..+.
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGMG------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCCC------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            4444445555555555555544443221      111245778889999999999999999877643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.08  E-value=0.15  Score=30.98  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhHHHHHHhc-cHHHHHHHHHHHHHHHHH-h------CC-hHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVLAQD-L------GD-RAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~-~------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ....+..++++|......+ ++++|..+++++.+++.. .      .+ ......++..++.+|...+.++...+
T Consensus        31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            3567888999999999999 999999999999999754 1      11 12346788899999999887764444

It is also involved in sporulation [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.01  E-value=0.12  Score=30.00  Aligned_cols=28  Identities=32%  Similarity=0.525  Sum_probs=23.0

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLV   50 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~   50 (104)
                      .-...+++.....|++.+|...|++++.
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qals  117 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALS  117 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhc
Confidence            3456788889999999999999998765

>KOG3785|consensus

Probab=95.98  E-value=0.034  Score=35.26  Aligned_cols=78  Identities=17%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             hhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      |.-|+.+.+-.  .+.+.....-.++|.++...|+|++|+..|.-...    ..+++  +....+++.+++..|.|.+|.
T Consensus        38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~--~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAP--AELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCC--cccchhHHHHHHHHHHHHHHH
Confidence            34455544322  34445567788899999999999999999876443    33333  245578899999999999988


Q ss_pred             HHHHHH
Q psy10736         83 DYHLRH   88 (104)
Q Consensus        83 ~~~~~a   88 (104)
                      ....++
T Consensus       112 ~~~~ka  117 (557)
T KOG3785|consen  112 SIAEKA  117 (557)
T ss_pred             HHHhhC
Confidence            776654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.95  E-value=0.29  Score=33.15  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=49.3

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL-GNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~   82 (104)
                      +..+++.++++.+-......+..-++.++...+... |....++.++.++..+..... +++..+ .......+|+..|.
T Consensus        82 ~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al  159 (608)
T PF10345_consen   82 YLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAAL  159 (608)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHH
Confidence            344555555554444444555555566666665544 777777776666654432221 111122 22222225777777


Q ss_pred             HHHHHHHHHHHHhcchh
Q psy10736         83 DYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~~~   99 (104)
                      +.++....++...+++.
T Consensus       160 ~~L~~~~~~a~~~~d~~  176 (608)
T PF10345_consen  160 ENLQSIAQLANQRGDPA  176 (608)
T ss_pred             HHHHHHHHHhhhcCCHH
Confidence            77777776666555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3364|consensus

Probab=95.95  E-value=0.11  Score=28.36  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=45.6

Q ss_pred             HHHHHHHHhHHHHHHhccH---HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEY---QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ....+..+++.+.....+.   .+.+..++.   +.+ ...+...-.+.+.++..+...++|+.++.+.+..++.
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~---l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILED---LLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHH---Hhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3445667777777666544   444444444   333 3334444567889999999999999999999877753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.92  E-value=0.18  Score=30.40  Aligned_cols=94  Identities=18%  Similarity=0.114  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-----
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-----   75 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-----   75 (104)
                      +.+|.+.++.+    ...+..-.+...++.++...++++.|+.+.++.+.....+.+   ...+++..|.++...     
T Consensus        50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---~dY~~YlkgLs~~~~i~~~~  126 (254)
T COG4105          50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---ADYAYYLKGLSYFFQIDDVT  126 (254)
T ss_pred             HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhccCCccc
Confidence            45555554433    444566788899999999999999999999998777655544   446777777776643     


Q ss_pred             CChhHHHHHHHHHHHHHHHhcchhhc
Q psy10736         76 RDYPTAIDYHLRHLIIAQQLMDRVGE  101 (104)
Q Consensus        76 g~~~~A~~~~~~a~~~~~~~~~~~~~  101 (104)
                      .|...+...+...-++..+.++....
T Consensus       127 rDq~~~~~A~~~f~~~i~ryPnS~Ya  152 (254)
T COG4105         127 RDQSAARAAFAAFKELVQRYPNSRYA  152 (254)
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCCcch
Confidence            45666777777777777777766543

>KOG4340|consensus

Probab=95.88  E-value=0.022  Score=35.27  Aligned_cols=68  Identities=22%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+....+.|-.....|+++.|++-|+.++++.   |..+   ...++++.+++..+++..|+++..+.++..-+
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhc---CCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence            34556667777777889999999888887652   3222   34578999999999999999999888765443

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=95.85  E-value=0.014  Score=35.32  Aligned_cols=66  Identities=18%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhc
Q psy10736         36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE  101 (104)
Q Consensus        36 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  101 (104)
                      -..+.|.++...|+-.++..+|....+.+....+..|+...+|+.|..+|.+|..++.+-.-+.++
T Consensus        53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We  118 (368)
T COG5091          53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWE  118 (368)
T ss_pred             cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence            357899999999999999999988888888888999999999999999999999988766555443

>TIGR00540 hemY_coli hemY protein

Probab=95.82  E-value=0.073  Score=34.06  Aligned_cols=27  Identities=7%  Similarity=-0.139  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ++..++.++...|++++|.+.+.+..+
T Consensus       189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k  215 (409)
T TIGR00540       189 VLKLAEEAYIRSGAWQALDDIIDNMAK  215 (409)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            445556666666666666666555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.80  E-value=0.17  Score=33.14  Aligned_cols=74  Identities=19%  Similarity=0.099  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA-----------VEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      +.......++|..+...|++.+|+..++..+.--....+.|           ....+....+..+...|++++|+.++..
T Consensus       371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            33356678899999999999999999988654221111111           1233455677778888888888888888


Q ss_pred             HHHHH
Q psy10736         88 HLIIA   92 (104)
Q Consensus        88 a~~~~   92 (104)
                      +.+..
T Consensus       451 A~~~~  455 (484)
T COG4783         451 ASQQV  455 (484)
T ss_pred             HHHhc
Confidence            77655

>KOG1174|consensus

Probab=95.76  E-value=0.19  Score=32.65  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=58.8

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -|..|+.+.++. ...+.-..++.--|......++.++|+-.|+.|..+.      +....+|-.+-..|...|++.+|.
T Consensus       315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA------PYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhhchHHHHH
Confidence            355666655443 2233445566777888888888888888888877663      334567777777788888888888


Q ss_pred             HHHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQQ   94 (104)
Q Consensus        83 ~~~~~a~~~~~~   94 (104)
                      ...+.++..+..
T Consensus       389 ~~An~~~~~~~~  400 (564)
T KOG1174|consen  389 ALANWTIRLFQN  400 (564)
T ss_pred             HHHHHHHHHhhc
Confidence            888777766543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.68  E-value=0.05  Score=33.36  Aligned_cols=48  Identities=19%  Similarity=0.131  Sum_probs=34.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .+.+|...|++..+   +.+   ....+++.++.++..+|++++|...+++++.
T Consensus       182 ~~~~A~y~f~El~~---~~~---~t~~~lng~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  182 KYQDAFYIFEELSD---KFG---STPKLLNGLAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             CCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHh---ccC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            56777777766432   222   2246788999999999999999999999874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0687|consensus

Probab=95.65  E-value=0.29  Score=30.78  Aligned_cols=89  Identities=16%  Similarity=0.061  Sum_probs=62.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736          7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus         7 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      +.++-++..........+..+.+..|...||-+.|.+.+.+..+-.-..|...........+|..|...   .-..+..+
T Consensus        89 ~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~---~lV~~~ie  165 (393)
T KOG0687|consen   89 EKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH---DLVTESIE  165 (393)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH---HHHHHHHH
Confidence            444444444445567788999999999999999999999998887777777766667777777776543   33444455


Q ss_pred             HHHHHHHHhcch
Q psy10736         87 RHLIIAQQLMDR   98 (104)
Q Consensus        87 ~a~~~~~~~~~~   98 (104)
                      ++-.+.++-||+
T Consensus       166 kak~liE~GgDW  177 (393)
T KOG0687|consen  166 KAKSLIEEGGDW  177 (393)
T ss_pred             HHHHHHHhCCCh
Confidence            555555555554

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=95.61  E-value=0.073  Score=38.69  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL   75 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   75 (104)
                      ...++....+|..+...|++.+|+..|..|+..++..+|....+.++-.++.+....
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~  295 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL  295 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999988888888887665543

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG2796|consensus

Probab=95.59  E-value=0.037  Score=33.72  Aligned_cols=72  Identities=11%  Similarity=0.021  Sum_probs=36.1

Q ss_pred             HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+++.........+.+.+|...+++.+|...+.+.+..    +  +.-+.+-++-+.+....|+...|++..+.+.+.
T Consensus       244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~----D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM----D--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc----C--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33333344444445555555555555555544443321    1  111234456666666666666666666666544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=95.59  E-value=0.054  Score=34.75  Aligned_cols=71  Identities=25%  Similarity=0.311  Sum_probs=53.1

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDL---GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      +..+..++...|||..|+...+. +++-++.   ..+...+..++.+|-+|..+++|.+|++.|...+-...+..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55667788899999999987754 2332221   22445577899999999999999999999999987665544

>KOG3616|consensus

Probab=95.57  E-value=0.12  Score=36.00  Aligned_cols=92  Identities=8%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHH------HHHHHHHhC-------------ChHHHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR------TLVLAQDLG-------------DRAVEAQAC   65 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------al~~~~~~~-------------~~~~~~~~~   65 (104)
                      +.+++.+.....|.......|-.++.-|...|+++.|.+.|.+      ++.+..+.+             .+...+..+
T Consensus       748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y  827 (1636)
T KOG3616|consen  748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY  827 (1636)
T ss_pred             hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence            5577777777777777777777888889999999999988765      344433322             223334445


Q ss_pred             HHHHHHHHHhCChhHHHHHH------HHHHHHHHHhc
Q psy10736         66 YSLGNTYTLLRDYPTAIDYH------LRHLIIAQQLM   96 (104)
Q Consensus        66 ~~l~~~~~~~g~~~~A~~~~------~~a~~~~~~~~   96 (104)
                      ..-+.-+...|++.+|...|      .+++..+++.+
T Consensus       828 iakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~  864 (1636)
T KOG3616|consen  828 IAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG  864 (1636)
T ss_pred             HHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence            55566677788888887776      45666666554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.55  E-value=0.21  Score=35.01  Aligned_cols=71  Identities=15%  Similarity=0.076  Sum_probs=43.4

Q ss_pred             hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      .|.+-...|+++.|+++.+.++....+.... ..+.+...+|.+..-.|++.+|..+.+.+.++++..+...
T Consensus       464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~-~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~  534 (894)
T COG2909         464 RAQVALNRGDPEEAEDLARLALVQLPEAAYR-SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH  534 (894)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcccccch-hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence            3455566666777777776666654443322 2345566666777777777777777777766666655543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.54  E-value=0.13  Score=32.73  Aligned_cols=73  Identities=18%  Similarity=0.086  Sum_probs=51.0

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHH-----------HhCChHH--------------HHHHHHHHHHHHHHhCChh
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQ-----------DLGDRAV--------------EAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~--------------~~~~~~~l~~~~~~~g~~~   79 (104)
                      ...++.-+...|++++|.+...++++..-           ..+++..              ....+..+|..+...+.|.
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~  345 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG  345 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence            34455667788999999999888776310           0111111              1146789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q psy10736         80 TAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~~~~   97 (104)
                      +|..+++.+++...+..+
T Consensus       346 kA~~~leaAl~~~~s~~~  363 (400)
T COG3071         346 KASEALEAALKLRPSASD  363 (400)
T ss_pred             HHHHHHHHHHhcCCChhh
Confidence            999999999876544433

>KOG1127|consensus

Probab=95.50  E-value=0.25  Score=35.38  Aligned_cols=81  Identities=12%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             hHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          6 NDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         6 ~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      .+++..++ .....|.-..++..+|.+|...|++..|+..+.++..+      .+......+..+......|++.+|+..
T Consensus       579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            34444443 33445566777888888888888888888888887665      333445667777888888888888888


Q ss_pred             HHHHHHHH
Q psy10736         85 HLRHLIIA   92 (104)
Q Consensus        85 ~~~a~~~~   92 (104)
                      +...+..+
T Consensus       653 l~~ii~~~  660 (1238)
T KOG1127|consen  653 LGLIIYAF  660 (1238)
T ss_pred             HHHHHHHH
Confidence            87776544

>KOG2581|consensus

Probab=95.48  E-value=0.17  Score=32.63  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             HHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         10 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ..+.-..|..+.+...+.+-..|...+.++.|.....++-  +.........++-++.+|.+..-+++|..|.+++-.|+
T Consensus       197 rtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~  274 (493)
T KOG2581|consen  197 RTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQAL  274 (493)
T ss_pred             HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHH
Confidence            3344445777777777877788888888888877665542  22222333567888999999999999999999999998


Q ss_pred             HHHHH
Q psy10736         90 IIAQQ   94 (104)
Q Consensus        90 ~~~~~   94 (104)
                      ..+..
T Consensus       275 rkapq  279 (493)
T KOG2581|consen  275 RKAPQ  279 (493)
T ss_pred             HhCcc
Confidence            77653

>KOG3081|consensus

Probab=95.45  E-value=0.3  Score=29.81  Aligned_cols=28  Identities=14%  Similarity=-0.104  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ..++.++.++..+|+|++|...++.++.
T Consensus       208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  208 LLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             HHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            5566777777777888888777777764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.34  E-value=0.52  Score=33.26  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      .....++..+|.+..-.|++++|..+..++.+++++.+..+..+++.+..+.++..+|+..
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~  554 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA  554 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence            4457789999999999999999999999999999999999999999999999999999433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.29  E-value=0.29  Score=28.49  Aligned_cols=69  Identities=14%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ....-..+...++..+...+++++|+..++.++...   .|......+-.+++.+...+|.+++|+..+...
T Consensus        84 ~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          84 KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            444555667788899999999999999999887653   334455677889999999999999998887643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.27  E-value=0.12  Score=30.01  Aligned_cols=71  Identities=10%  Similarity=0.079  Sum_probs=50.7

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +....+..+++.....+++..|...+++..+.-.....+    ......|.++...|.+.+|+..|+.++..+..
T Consensus       122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----DGHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----CchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            345567888888899999999988888765543222222    33456788888889998888888888765543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.23  E-value=0.19  Score=33.48  Aligned_cols=32  Identities=6%  Similarity=-0.110  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++..+|..+...|++++|...+++++++-.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p  451 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM  451 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence            36778888888899999999999999998753

>PRK11906 transcriptional regulator; Provisional

Probab=95.21  E-value=0.25  Score=32.31  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHhHHHHHHh---c------cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFL---G------EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~---~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      ..|..+.+|-.++.++...   |      +..+|.+..++++++    +.  .-+.++..+|.+.+..++++.|...|++
T Consensus       290 ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~--~Da~a~~~~g~~~~~~~~~~~a~~~f~r  363 (458)
T PRK11906        290 IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TT--VDGKILAIMGLITGLSGQAKVSHILFEQ  363 (458)
T ss_pred             CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence            3445566777777776654   1      234444444444443    22  2247889999999999999999999999


Q ss_pred             HHHHHHHh
Q psy10736         88 HLIIAQQL   95 (104)
Q Consensus        88 a~~~~~~~   95 (104)
                      |..+....
T Consensus       364 A~~L~Pn~  371 (458)
T PRK11906        364 AKIHSTDI  371 (458)
T ss_pred             HhhcCCcc
Confidence            99875443

>KOG1156|consensus

Probab=95.17  E-value=0.18  Score=34.21  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      ......|++.+|.++....+|++|+.+|+.|+.+
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            3344567788888888888888888888887754

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.17  E-value=0.15  Score=29.65  Aligned_cols=57  Identities=18%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      ..+...+|..|. ..+.++++..+.+++++.....+..  ..++..|+.++...|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhh
Confidence            444566666665 5588999999999988876653333  35678888889999888876

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.14  E-value=0.16  Score=24.75  Aligned_cols=34  Identities=15%  Similarity=0.089  Sum_probs=24.5

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      ..+..+...+.-+-..|++++|+.+|+++++.+.
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~   37 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLS   37 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            3455566667777777888888888888887643

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.07  E-value=0.23  Score=34.00  Aligned_cols=78  Identities=13%  Similarity=-0.031  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      .++|..++......  -..+|+.+...|...|++++|++.+.+....    +-.+. ..++..+...+...|++++|.+.
T Consensus       275 ~~~A~~vf~~m~~~--~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~i  347 (697)
T PLN03081        275 IEDARCVFDGMPEK--TTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSID-QFTFSIMIRIFSRLALLEHAKQA  347 (697)
T ss_pred             HHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhccchHHHHHH
Confidence            44556666555432  2346777788888888888888888775431    11111 12445555555555555555555


Q ss_pred             HHHHH
Q psy10736         85 HLRHL   89 (104)
Q Consensus        85 ~~~a~   89 (104)
                      +..++
T Consensus       348 ~~~m~  352 (697)
T PLN03081        348 HAGLI  352 (697)
T ss_pred             HHHHH
Confidence            54443

>KOG2300|consensus

Probab=94.86  E-value=0.62  Score=31.00  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC--hhHHHH
Q psy10736          6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD--YPTAID   83 (104)
Q Consensus         6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~   83 (104)
                      .+.++.+...+.....+-.+.-+|.+....|+..++.+...-+.+.+++..|.+...+...-+-.++...|+  -+...+
T Consensus       469 ~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e  548 (629)
T KOG2300|consen  469 RETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE  548 (629)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence            445555544455555666778889999999999999999999999999999999888888888889999887  444444


Q ss_pred             HHHH
Q psy10736         84 YHLR   87 (104)
Q Consensus        84 ~~~~   87 (104)
                      .+.+
T Consensus       549 ~~~~  552 (629)
T KOG2300|consen  549 AFRK  552 (629)
T ss_pred             HHHH
Confidence            4433

>KOG2796|consensus

Probab=94.82  E-value=0.19  Score=30.83  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=29.9

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ....+|..-...||.+.|..++++.-....+..+...-.....+.+.+|...+++.+|...+.++
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i  278 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI  278 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhc
Confidence            33444444445555555555555444333333333333344444455555555555555444443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.81  E-value=0.14  Score=30.68  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=18.6

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTL   49 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   49 (104)
                      ..+..++.+|.+....|+.-.|+-+|.+++
T Consensus        14 ~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen   14 SNGNPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             TBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CCCCcccchhhhhccccchHHHHHHHHHHH
Confidence            345666666666666666666666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3081|consensus

Probab=94.79  E-value=0.35  Score=29.55  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.|.-+++...+ .+.-...++.++.++..+|++++|....+.+++-  ..+++    .++.|+-..-...|...++..
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dp----etL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDP----ETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCH----HHHHHHHHHHHHhCCChHHHH
Confidence            5566666666655 4455667889999999999999999999998653  44443    455666666777777766655


Q ss_pred             HH
Q psy10736         84 YH   85 (104)
Q Consensus        84 ~~   85 (104)
                      -+
T Consensus       263 r~  264 (299)
T KOG3081|consen  263 RN  264 (299)
T ss_pred             HH
Confidence            44

>KOG1127|consensus

Probab=94.77  E-value=0.3  Score=35.03  Aligned_cols=88  Identities=23%  Similarity=0.269  Sum_probs=64.3

Q ss_pred             CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhcc-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH---hCC
Q psy10736          3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL---LRD   77 (104)
Q Consensus         3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~---~g~   77 (104)
                      +-|+++++.++.. ...+.--.+...+|.++...+. +++|.+.|..+.++      .+....++-.+++.|..   ..+
T Consensus        16 k~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKl------dpdnlLAWkGL~nLye~~~dIl~   89 (1238)
T KOG1127|consen   16 KEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKL------DPDNLLAWKGLGNLYERYNDILD   89 (1238)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhc------ChhhhHHHHHHHHHHHccchhhh
Confidence            4577788777654 3344556678889999999987 99999999988776      33345777888888876   345


Q ss_pred             hhHHHHHHHHHHHHHHHhc
Q psy10736         78 YPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        78 ~~~A~~~~~~a~~~~~~~~   96 (104)
                      ++++-..|++...+.+..+
T Consensus        90 ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   90 LDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             hhHhHHHHHHHHHhhhhhh
Confidence            7778888888776666544

>KOG4162|consensus

Probab=94.74  E-value=0.39  Score=33.30  Aligned_cols=67  Identities=15%  Similarity=-0.026  Sum_probs=55.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+.+.++.-|...++.+.|.++.++++++.+..     ...++.-++.++...+++.+|+...+.+++-+..
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-----~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~  545 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALALNRGD-----SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD  545 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence            667889999999999999999999998873321     2356778889999999999999999888876554

>KOG2610|consensus

Probab=94.71  E-value=0.24  Score=31.39  Aligned_cols=88  Identities=13%  Similarity=0.030  Sum_probs=59.5

Q ss_pred             CCchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          2 GVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         2 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      |++.+.++.+-+-+.+.|.-..+...--..+..+|+.+.-...+++.+...  ..+.+..+......+..+...|-+.+|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            455555666666666666666666666677788888888777777755432  233444456666777777888888888


Q ss_pred             HHHHHHHHHH
Q psy10736         82 IDYHLRHLII   91 (104)
Q Consensus        82 ~~~~~~a~~~   91 (104)
                      ++..++++++
T Consensus       195 Ek~A~ralqi  204 (491)
T KOG2610|consen  195 EKQADRALQI  204 (491)
T ss_pred             HHHHHhhccC
Confidence            8888888765

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.69  E-value=0.37  Score=34.91  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=27.2

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ++..+-..|...|++++|.+.+++..+.    +-.+ ...+++.+...|...|++++|...|+++.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~----gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEY----NIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3444444555555555555555443221    1000 11234444444555555555555554443

>PLN03077 Protein ECB2; Provisional

Probab=94.66  E-value=0.3  Score=34.29  Aligned_cols=68  Identities=9%  Similarity=-0.069  Sum_probs=43.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHH------------HHHHHHhCChH--------------HHHHHHHHHHHHHHHhC
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRT------------LVLAQDLGDRA--------------VEAQACYSLGNTYTLLR   76 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g   76 (104)
                      ..|..+...+...|++++|.+.+++.            +..++..++..              .....+..++++|...|
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g  705 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG  705 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence            56677777777778888887777663            11111111111              11234667889999999


Q ss_pred             ChhHHHHHHHHHHH
Q psy10736         77 DYPTAIDYHLRHLI   90 (104)
Q Consensus        77 ~~~~A~~~~~~a~~   90 (104)
                      +|++|.+..+...+
T Consensus       706 ~~~~a~~vr~~M~~  719 (857)
T PLN03077        706 KWDEVARVRKTMRE  719 (857)
T ss_pred             ChHHHHHHHHHHHH
Confidence            99999888877654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.62  E-value=0.22  Score=35.48  Aligned_cols=94  Identities=16%  Similarity=0.068  Sum_probs=64.8

Q ss_pred             CchhHHHHHHHHhCCHH-H---HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736          3 VQPNDRLKIAREFGDKA-A---ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      +.|++|+..+++.++.. +   --.+...+|......-.-..-.+.+.+|+.-+....+......-|..-+.+|...|++
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (932)
T PRK13184        489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEY  568 (932)
T ss_pred             HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhH
Confidence            56888888888775431 1   1223444555554432222222677888888888777666666788889999999999


Q ss_pred             hHHHHHHHHHHHHHHHhc
Q psy10736         79 PTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        79 ~~A~~~~~~a~~~~~~~~   96 (104)
                      .+-++++.-++..+..++
T Consensus       569 ~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        569 NEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHHHHHHHHHHHhcCCCC
Confidence            999999999987766554

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=94.60  E-value=0.89  Score=30.70  Aligned_cols=83  Identities=14%  Similarity=0.098  Sum_probs=55.5

Q ss_pred             HHHhCCHHHHHHHHHHhHHHHHHh--ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         12 AREFGDKAAERRANSNLGNSHIFL--GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      .-..|.....-+++.+||.+.-..  ..-..++..|.+++...+..-+ ...+.-|..+|..+++.+++.+|+..+-++-
T Consensus       267 lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~-n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa  345 (618)
T PF05053_consen  267 LYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN-NHHVYPYTYLGGYYYRHKRYREALRSWAEAA  345 (618)
T ss_dssp             HHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT-T--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc-CCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence            334454445556666666665433  2346678999999998887644 2346778899999999999999999998887


Q ss_pred             HHHHHh
Q psy10736         90 IIAQQL   95 (104)
Q Consensus        90 ~~~~~~   95 (104)
                      ......
T Consensus       346 ~Vi~~Y  351 (618)
T PF05053_consen  346 DVIRKY  351 (618)
T ss_dssp             HHHTTS
T ss_pred             HHHHHc
Confidence            766554

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.59  E-value=0.13  Score=22.29  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         66 YSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        66 ~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ..++.+|...|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4677888888888888888887773

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3617|consensus

Probab=94.49  E-value=0.44  Score=33.86  Aligned_cols=69  Identities=23%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh------CChH---------HHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL------GDRA---------VEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      ..|.+.|...-..|+.+.|+.+|..|.+.+...      |...         +--.+++.+|.-|...|+..+|+.+|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            346667778888899999999999988765321      1111         1124788999999999999999999988


Q ss_pred             HHHH
Q psy10736         88 HLII   91 (104)
Q Consensus        88 a~~~   91 (104)
                      +..+
T Consensus       993 Aqaf  996 (1416)
T KOG3617|consen  993 AQAF  996 (1416)
T ss_pred             HHHH
Confidence            7543

>KOG0545|consensus

Probab=94.46  E-value=0.47  Score=28.85  Aligned_cols=68  Identities=15%  Similarity=0.064  Sum_probs=53.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .-.+.|.+.++...|++-+++++....+..      .+.-..+++..|.++...=+.++|...+.+++++-...
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            345788899999999999999988776543      22345788999999888888999999999998765443

>KOG4642|consensus

Probab=94.40  E-value=0.045  Score=32.75  Aligned_cols=63  Identities=16%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +..-|+.+.....|..|+..|.++|.+      .+..+.-+.+.+.++....+++......++++++..
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~   75 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP   75 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh
Confidence            445567777788999999999999876      333445677889999999999999999999988754

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.27  E-value=0.2  Score=28.66  Aligned_cols=51  Identities=18%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhc----cHHHHHHHHHHHHHHHHHh
Q psy10736          5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLG----EYQAASEHYKRTLVLAQDL   55 (104)
Q Consensus         5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~~~~~   55 (104)
                      +++|+..++ .+.-.|....+++++|+++...+    +..+|..+|++|.+.+++.
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence            455554333 33445566778888888888775    4567777888877777643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>smart00101 14_3_3 14-3-3 homologues

Probab=94.24  E-value=0.68  Score=27.89  Aligned_cols=76  Identities=16%  Similarity=0.005  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH---hCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD---LGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      ....+..+.-.|..|+..-+          .+.|.+.|++|.+++..   .-+|..++.+++.-...|.-.++.++|...
T Consensus       114 ~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~l  193 (244)
T smart00101      114 AESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNL  193 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34444444445666665422          35889999999999876   334555666665555556667999999888


Q ss_pred             HHHHHHHHH
Q psy10736         85 HLRHLIIAQ   93 (104)
Q Consensus        85 ~~~a~~~~~   93 (104)
                      .++++.-+-
T Consensus       194 Ak~afd~Ai  202 (244)
T smart00101      194 AKQAFDEAI  202 (244)
T ss_pred             HHHHHHHHH
Confidence            777766543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG0686|consensus

Probab=94.21  E-value=0.81  Score=29.71  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..+..-.++..+|.-|...|+++.|++.|-++.+.+...+.   .+..+.++=.+-...|+|.....+-.++..-
T Consensus       145 iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  145 IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            44566778999999999999999999999999888876543   3455666667777788888777777666543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.81  Score=28.55  Aligned_cols=89  Identities=12%  Similarity=0.001  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      ....++++.+-.........-..+...+...|.|.+|+......+.-+++..|.......+..-.-+|+...+..++...
T Consensus       108 ~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaS  187 (421)
T COG5159         108 LTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKAS  187 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhH
Confidence            44566777766666677777777888899999999999999999988999998888878888888888888888888777


Q ss_pred             HHHHHHHHH
Q psy10736         85 HLRHLIIAQ   93 (104)
Q Consensus        85 ~~~a~~~~~   93 (104)
                      +..|--++.
T Consensus       188 LTaArt~An  196 (421)
T COG5159         188 LTAARTLAN  196 (421)
T ss_pred             HHHHHHHhh
Confidence            766655443

>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain

Probab=94.15  E-value=0.62  Score=27.11  Aligned_cols=81  Identities=10%  Similarity=-0.083  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      ......++.+....+...++++.|..+......+.....+........+.-|......|+...+....++++++++..|.
T Consensus       124 ~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~  203 (220)
T TIGR01716       124 RRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGY  203 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence            34456677777777788889999988887765554322234445566667777778889988889999999999988775


Q ss_pred             h
Q psy10736         98 R   98 (104)
Q Consensus        98 ~   98 (104)
                      +
T Consensus       204 ~  204 (220)
T TIGR01716       204 P  204 (220)
T ss_pred             H
Confidence            4

This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.11  E-value=0.53  Score=34.20  Aligned_cols=61  Identities=15%  Similarity=0.075  Sum_probs=33.4

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ++..+...|...|++++|.+.+++....    +-.+. ..+++.+-..|...|++++|.+.++++.
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSI----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4555555566666666666655543221    11111 2345666666666777777777766654

>PLN03077 Protein ECB2; Provisional

Probab=94.05  E-value=0.35  Score=33.99  Aligned_cols=27  Identities=19%  Similarity=0.113  Sum_probs=17.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTL   49 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al   49 (104)
                      .+++.+...|...|+.++|++.+++..
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~  581 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMV  581 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346666666777777777777776644

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.99  E-value=0.5  Score=25.47  Aligned_cols=67  Identities=13%  Similarity=0.228  Sum_probs=51.7

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR---------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +..+|......+++-.++-+|++|+.+..+....         ...+..+-|++..+...||.+-.++|++-|-+.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~   79 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK   79 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3456777778889999999999999988776311         112456779999999999999999998876543

>KOG0545|consensus

Probab=93.92  E-value=0.85  Score=27.83  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=53.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh------CCh-HHH-----HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL------GDR-AVE-----AQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~-~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ..++..-|+-....|++.+|...|..|+...+..      +++ |..     .-.+.|.+.++...|++-++++...+.+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999877643      332 211     2246788889999999999999887776


Q ss_pred             HH
Q psy10736         90 II   91 (104)
Q Consensus        90 ~~   91 (104)
                      ..
T Consensus       258 ~~  259 (329)
T KOG0545|consen  258 RH  259 (329)
T ss_pred             hc
Confidence            43

>KOG2908|consensus

Probab=93.79  E-value=1.1  Score=28.50  Aligned_cols=65  Identities=6%  Similarity=-0.036  Sum_probs=55.1

Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         32 HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        32 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      ....++.++|+++.++.++-.+....+.....+...++.++...||..++.+.+.+.-......+
T Consensus        85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~  149 (380)
T KOG2908|consen   85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD  149 (380)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence            34445899999999999999999888888889999999999999999999988887776555443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.72  E-value=0.41  Score=23.58  Aligned_cols=37  Identities=14%  Similarity=0.060  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL   55 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~   55 (104)
                      ...+..+.+.|..+-..|+.+.|+.+|++++....+.
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg   41 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG   41 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            4455666666777777777777777777777766553

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.62  E-value=0.42  Score=23.35  Aligned_cols=31  Identities=23%  Similarity=0.171  Sum_probs=22.8

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .+.-+...+.-.-..|++++|+.+|..+++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4445566666677778888888888888775

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=93.60  E-value=0.28  Score=30.07  Aligned_cols=73  Identities=16%  Similarity=0.062  Sum_probs=56.6

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR   76 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   76 (104)
                      +.+.|+-.++..+|...++.+....+..|....+|+-|..||..|+.+......+....+.-..+-.....+.
T Consensus        61 ~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ~  133 (368)
T COG5091          61 LLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQK  133 (368)
T ss_pred             HHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhhc
Confidence            4667888888889998888888888889999999999999999999997776666555555555544444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.55  E-value=0.29  Score=21.23  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=26.4

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA   64 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   64 (104)
                      ..++..|..+|+.+.|.+.+++.+.    .++......+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA   37 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEA   37 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHH
Confidence            5789999999999999999998763    3444444333

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4322|consensus

Probab=93.40  E-value=1.4  Score=28.82  Aligned_cols=91  Identities=5%  Similarity=-0.173  Sum_probs=70.7

Q ss_pred             HHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +....+......++..++..+...+..-.+..+.-.++...++...+...+..-..++......|.+++|...+..++..
T Consensus       303 c~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~  382 (482)
T KOG4322|consen  303 CDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHL  382 (482)
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhH
Confidence            34445566777777777777777777888888888888887777777777777888899999999999999999999988


Q ss_pred             HHHhcchhhcc
Q psy10736         92 AQQLMDRVGEG  102 (104)
Q Consensus        92 ~~~~~~~~~~~  102 (104)
                      ....|.-...+
T Consensus       383 Il~~GgL~dra  393 (482)
T KOG4322|consen  383 ILVQGGLDDRA  393 (482)
T ss_pred             HHhccchhhcc
Confidence            77666554443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.38  E-value=0.84  Score=30.38  Aligned_cols=62  Identities=15%  Similarity=0.062  Sum_probs=45.1

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      ..+-..+|++....|+.++|++.++..+....    ......++.++-..+...+.+.++...+.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44556789999999999999999988664432    222345778888888888887776665544

The molecular function of this protein is uncertain.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=93.37  E-value=0.42  Score=22.60  Aligned_cols=30  Identities=20%  Similarity=0.131  Sum_probs=19.5

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +..+...|.-.-..|++++|+++|.++++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344555566666667777777777777665

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2610|consensus

Probab=93.35  E-value=0.98  Score=28.85  Aligned_cols=84  Identities=12%  Similarity=-0.000  Sum_probs=55.1

Q ss_pred             chhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +|.+|.+.+.+ +...+.-..+....+.++...+++.++.+...+..+..+..  ......-++..+..+...+.++.|+
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhcccchhHHH
Confidence            34555554432 23344456667777778888888888888777766665521  1222345667788888889999999


Q ss_pred             HHHHHHH
Q psy10736         83 DYHLRHL   89 (104)
Q Consensus        83 ~~~~~a~   89 (104)
                      +.|+.-+
T Consensus       268 eIyD~ei  274 (491)
T KOG2610|consen  268 EIYDREI  274 (491)
T ss_pred             HHHHHHH
Confidence            9887755

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.34  E-value=1  Score=26.93  Aligned_cols=80  Identities=20%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHhHHHHHHh-----c-----cHHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFL-----G-----EYQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~-----~-----~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +....+..+.-.|..|...     |     -.+.|.+.|++|++++.. ..  +|..++.+++.-...|.-.|+.++|..
T Consensus       111 ~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~  190 (236)
T PF00244_consen  111 SPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIE  190 (236)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred             chhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            4445555555556666554     2     237899999999999988 32  344455555554444566899999999


Q ss_pred             HHHHHHHHHHHhc
Q psy10736         84 YHLRHLIIAQQLM   96 (104)
Q Consensus        84 ~~~~a~~~~~~~~   96 (104)
                      ..++++.-+...-
T Consensus       191 ia~~afd~a~~~l  203 (236)
T PF00244_consen  191 IAKQAFDEAISEL  203 (236)
T ss_dssp             HHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhhh
Confidence            9999988775443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=93.06  E-value=0.14  Score=37.31  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhccc
Q psy10736         60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM  103 (104)
Q Consensus        60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  103 (104)
                      ..++..-.+|+.+...|.+.+|+..|.++++.++..+|..|.|.
T Consensus       240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~  283 (1185)
T PF08626_consen  240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLAS  283 (1185)
T ss_pred             hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHH
Confidence            34667778999999999999999999999999999999988774

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG3617|consensus

Probab=92.78  E-value=2.7  Score=30.29  Aligned_cols=79  Identities=22%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHH------HHHHHhCChHHHHHHH--------HHHHHH
Q psy10736          6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL------VLAQDLGDRAVEAQAC--------YSLGNT   71 (104)
Q Consensus         6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~~~~~--------~~l~~~   71 (104)
                      ++|-.++++.||.    .+++.+|.-|-..|+..+|+..|.+|-      .++++.+-...++...        ...+..
T Consensus       955 ~kAa~iA~esgd~----AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen  955 DKAARIAEESGDK----AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred             hHHHHHHHhcccH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence            4666777777764    457889999999999999999988754      4455544333322211        123344


Q ss_pred             HHHhC-ChhHHHHHHHHH
Q psy10736         72 YTLLR-DYPTAIDYHLRH   88 (104)
Q Consensus        72 ~~~~g-~~~~A~~~~~~a   88 (104)
                      |...| ....|...|.++
T Consensus      1031 yEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1031 YEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred             HHHcchhhhHHHHHHHhh
Confidence            44555 566666666554

>KOG0495|consensus

Probab=92.44  E-value=0.94  Score=31.41  Aligned_cols=76  Identities=11%  Similarity=-0.011  Sum_probs=56.3

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHH------------------------HHHHHHHHHHHHHhCChhH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE------------------------AQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------------------------~~~~~~l~~~~~~~g~~~~   80 (104)
                      +...-..-.+.|+.+.|.....+|++-+...|.-+..                        ...+..+|..++...++++
T Consensus       756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k  835 (913)
T KOG0495|consen  756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK  835 (913)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence            3444445667788999988888888765444433322                        1256688999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhh
Q psy10736         81 AIDYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        81 A~~~~~~a~~~~~~~~~~~~  100 (104)
                      |.++|.++..+..+.||.+.
T Consensus       836 ar~Wf~Ravk~d~d~GD~wa  855 (913)
T KOG0495|consen  836 AREWFERAVKKDPDNGDAWA  855 (913)
T ss_pred             HHHHHHHHHccCCccchHHH
Confidence            99999999999888887653

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.11  E-value=1.7  Score=26.40  Aligned_cols=89  Identities=12%  Similarity=-0.056  Sum_probs=57.3

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHH-----------HHHHhCChHHHHHHHHHHHHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV-----------LAQDLGDRAVEAQACYSLGNT   71 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~l~~~   71 (104)
                      ++.++++.+.+..+.+.+....+..+|..+..-+++.+|..++..+-+           .+...+++............-
T Consensus        71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~  150 (260)
T PF04190_consen   71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQ  150 (260)
T ss_dssp             HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            356788888844455667778889999999999999999998864321           122334443333333444455


Q ss_pred             HHHhCChhHHHHHHHHHHHH
Q psy10736         72 YTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        72 ~~~~g~~~~A~~~~~~a~~~   91 (104)
                      |...++...|...+....+.
T Consensus       151 yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  151 YLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             HHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHH
Confidence            77889999999888877765

; PDB: 3LKU_E 2WPV_G.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.00  E-value=1.9  Score=28.04  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG   56 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~   56 (104)
                      +......++.+|.+|.++++|.+|++.+...+-...+..
T Consensus       160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  160 PACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             cchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344567799999999999999999999999887765544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=92.00  E-value=0.71  Score=21.80  Aligned_cols=31  Identities=10%  Similarity=-0.018  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      +...|.-....|++++|+.+|.++++.+...
T Consensus         8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    8 LIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3455666667788888888888887765543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=91.99  E-value=0.36  Score=18.33  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ++.+-..|...|++++|.+.+++..
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3444555666666666666665543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.97  E-value=1.1  Score=24.15  Aligned_cols=50  Identities=10%  Similarity=0.022  Sum_probs=38.7

Q ss_pred             chhHHHHHHHHhCC---------HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREFGD---------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus         4 ~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      +|++|+.+.+....         .......+.|++..+...|+.+-.+.|++-|.+...
T Consensus        23 hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl   81 (140)
T PF10952_consen   23 HYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL   81 (140)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            58889988877731         122355689999999999999999999988776543

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.88  E-value=0.85  Score=22.48  Aligned_cols=31  Identities=13%  Similarity=-0.153  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..+-..|..+...|+.++|+.+|++++....
T Consensus         9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~   39 (79)
T cd02679           9 FEEISKALRADEWGDKEQALAHYRKGLRELE   39 (79)
T ss_pred             HHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence            3344455555556777777777777766554

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.85  E-value=0.84  Score=22.32  Aligned_cols=32  Identities=16%  Similarity=0.075  Sum_probs=23.4

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      .+.-+...|...-..|++++|+.+|.++++.+
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l   36 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLL   36 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            34455666777777788888888888888764

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF12854 PPR_1: PPR repeat

Probab=91.73  E-value=0.46  Score=19.10  Aligned_cols=25  Identities=12%  Similarity=0.036  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      .+++.+-..+...|+.++|.+.+++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            4566777777788888888777765

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.33  E-value=0.98  Score=22.08  Aligned_cols=25  Identities=4%  Similarity=-0.079  Sum_probs=13.2

Q ss_pred             HHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         69 GNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        69 ~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      |.-.-..|++++|+.+|.++++.+.
T Consensus        13 Ave~D~~g~y~eAl~~Y~~aie~l~   37 (77)
T cd02683          13 AVELDQEGRFQEALVCYQEGIDLLM   37 (77)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.28  E-value=1.5  Score=24.25  Aligned_cols=64  Identities=30%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-HHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN-TYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ....+...+......+++..++..+.+++......      .......+. ++...|++..|...+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444555555555555555555555544322211      011122222 56666666666666666643

>KOG3364|consensus

Probab=91.06  E-value=0.63  Score=25.57  Aligned_cols=36  Identities=19%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .++...-.+++.++..++..++|+.++.|.+..++.
T Consensus        65 ~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   65 AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            456677788999999999999999999999887664

>KOG4340|consensus

Probab=90.95  E-value=2.7  Score=26.55  Aligned_cols=50  Identities=22%  Similarity=0.214  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHhCCH-HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREFGDK-AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus         5 ~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      |..++.+....+.. +.....+..+|.+|+...++..|-.+|++.-..+.+
T Consensus        26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~   76 (459)
T KOG4340|consen   26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE   76 (459)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            55666665544332 223445788899999999999999999987665443

>KOG2047|consensus

Probab=90.53  E-value=1.7  Score=30.18  Aligned_cols=69  Identities=7%  Similarity=-0.011  Sum_probs=50.2

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ....++..+|..|...|+.+.|...++++...-=  +....++.++++-|..-....+++.|....+++..
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            3456778889999999999999999999876521  12233456666767777777788888888777753

>KOG1308|consensus

Probab=90.53  E-value=0.043  Score=34.38  Aligned_cols=68  Identities=12%  Similarity=0.008  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+..+..+...+.++..++....|+.-+..++.+-      ......+-..|.....+|+|.+|...+..+.++
T Consensus       144 np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  144 NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             CCchhhhcccccceeeeccCCchhhhhhhhhhccC------cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            34455566666666666666777777666666552      223344556677777778888888887777654

>KOG4507|consensus

Probab=90.44  E-value=2  Score=29.55  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=53.4

Q ss_pred             HHhCCHHHHH-HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         13 REFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        13 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ....+.+... ..+.+++++....|-...|-..+.+++.+.  ..    ....++.+|+.+....+...|++.++.++++
T Consensus       632 ~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~s----epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  632 RALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SS----EPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--cc----CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            3444433332 336677888777777788888888887775  11    2245678899999999999999999999865


Q ss_pred             HH
Q psy10736         92 AQ   93 (104)
Q Consensus        92 ~~   93 (104)
                      -.
T Consensus       706 ~~  707 (886)
T KOG4507|consen  706 TT  707 (886)
T ss_pred             CC
Confidence            43

>PF13041 PPR_2: PPR repeat family

Probab=90.26  E-value=0.88  Score=19.77  Aligned_cols=29  Identities=10%  Similarity=0.025  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+++.+=..+...|++++|.+.|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            35666677788888888888888887743

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=90.07  E-value=2.8  Score=25.15  Aligned_cols=52  Identities=17%  Similarity=0.066  Sum_probs=36.9

Q ss_pred             CchhHHHHHHHH-h-CCHHHHHHHHHHhHHHH-HHhccHHHHHHHHHHHHHHHHH
Q psy10736          3 VQPNDRLKIARE-F-GDKAAERRANSNLGNSH-IFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus         3 ~~~~~a~~~~~~-~-~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      +.|++|+.++.. + +..|.......|.+..+ -..|+.++|++..+++.+-+-.
T Consensus       147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            358899999988 3 34455555556666555 4479999999999999887654

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.64  E-value=3  Score=27.48  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=30.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +.|.++++..+++.    .+..||......|+++-|..+++++-+.
T Consensus       335 ~~A~~~a~~~~~~~----~W~~Lg~~AL~~g~~~lAe~c~~k~~d~  376 (443)
T PF04053_consen  335 DIALEIAKELDDPE----KWKQLGDEALRQGNIELAEECYQKAKDF  376 (443)
T ss_dssp             HHHHHHCCCCSTHH----HHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred             HHHHHHHHhcCcHH----HHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence            44555555554433    6788999999999999999999886554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.59  E-value=1.5  Score=21.36  Aligned_cols=30  Identities=27%  Similarity=0.259  Sum_probs=17.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +..+...|.-.-..|++++|..+|..+++.
T Consensus         6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~   35 (75)
T cd02677           6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL   35 (75)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            334444455555556666666666666554

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.57  E-value=1.5  Score=21.42  Aligned_cols=23  Identities=13%  Similarity=0.041  Sum_probs=10.8

Q ss_pred             HHHHHHhCChhHHHHHHHHHHHH
Q psy10736         69 GNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        69 ~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +.-.-..|++++|+.+|.++++.
T Consensus        13 Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681          13 AVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHH
Confidence            33344445555555555555443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.57  E-value=3.5  Score=25.60  Aligned_cols=71  Identities=11%  Similarity=-0.013  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      +...+.++..++......|.++.|...+.++..........  ...+...-+.+.+..|+..+|+..++..+.
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66777888999999999999999999888866543222221  224556668889999999999999988887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=89.51  E-value=1.5  Score=21.16  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      ...+..+...|...-..|++++|+.+|.++++.+
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l   38 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYL   38 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3445556666777777788888888888887764

>KOG1839|consensus

Probab=89.41  E-value=2.9  Score=31.03  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +.|..+..-.+++......++++.|+++.+.|+........  ....+.++..++..+...+++..|+...+..+.+++.
T Consensus      1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred             CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence            45556666788888888889999999999999997776543  3445677888899999999999999999999988875


Q ss_pred             h
Q psy10736         95 L   95 (104)
Q Consensus        95 ~   95 (104)
                      .
T Consensus      1132 q 1132 (1236)
T KOG1839|consen 1132 Q 1132 (1236)
T ss_pred             h
Confidence            4

>KOG4814|consensus

Probab=89.05  E-value=6  Score=27.67  Aligned_cols=66  Identities=9%  Similarity=-0.001  Sum_probs=45.1

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      -+....+++-+|....+++.|.+++++|-+.-++.  +    .....+-.+...-|.-++|+....+.....
T Consensus       393 FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--~----l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  393 FAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--P----LCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc--H----HHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            37788899999999999999999999986652221  1    222333344455577788888776665443

>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function

Probab=88.94  E-value=1.5  Score=20.49  Aligned_cols=58  Identities=10%  Similarity=-0.064  Sum_probs=36.1

Q ss_pred             hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHH
Q psy10736         28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH   85 (104)
Q Consensus        28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   85 (104)
                      -+......|+|-+|-+.++..-...+........+.+....|..+...|+...|...+
T Consensus         5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~   62 (62)
T PF03745_consen    5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL   62 (62)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred             HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence            3456677888888888887754321111112344566667777788899998887653

The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.92  E-value=4.2  Score=25.63  Aligned_cols=62  Identities=10%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      .-++-++-+.+.++-.+..+.....+.+.-++|..|...+|.+.+.+++.+.+.-+-..|-+
T Consensus        90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K  151 (412)
T COG5187          90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK  151 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc
Confidence            34555666666666555555456678899999999999999999999999988766555544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=88.67  E-value=1  Score=27.13  Aligned_cols=52  Identities=25%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         34 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        34 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.+.+.+.|.+++++..+      ....+..+|......|+++.|..-|++.+++
T Consensus         7 ~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            446677777777777766332      2345566677777777777777777777654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.51  E-value=1.1  Score=18.45  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhCChhHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      ...+|..+..+|++++|+..++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~   25 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQ   25 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHH
Confidence            4456777777777777777743

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=88.25  E-value=0.95  Score=17.42  Aligned_cols=25  Identities=12%  Similarity=0.032  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ++.+-..|...|++++|.+.|++..
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~   27 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEML   27 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3445556677777777777777654

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.99  E-value=2  Score=20.86  Aligned_cols=32  Identities=19%  Similarity=-0.061  Sum_probs=24.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      ..+...|.-.-..|++++|+.+|.++++.+..
T Consensus         7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33445556677789999999999999998754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.86  E-value=2.1  Score=20.85  Aligned_cols=20  Identities=15%  Similarity=0.149  Sum_probs=10.9

Q ss_pred             HhCChhHHHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..|++++|..+|..+++.+.
T Consensus        18 ~~~~y~eA~~~Y~~~i~~~~   37 (75)
T cd02677          18 EEGDYEAAFEFYRAGVDLLL   37 (75)
T ss_pred             HHhhHHHHHHHHHHHHHHHH
Confidence            33555666666555555443

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=87.73  E-value=2  Score=20.64  Aligned_cols=19  Identities=16%  Similarity=0.188  Sum_probs=8.9

Q ss_pred             HhCChhHHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..|++++|+.+|..+++.+
T Consensus        20 ~~g~~~eAl~~Y~~a~e~l   38 (77)
T smart00745       20 EAGDYEEALELYKKAIEYL   38 (77)
T ss_pred             HcCCHHHHHHHHHHHHHHH
Confidence            3444445544444444433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=87.72  E-value=4.2  Score=27.35  Aligned_cols=57  Identities=19%  Similarity=0.065  Sum_probs=42.1

Q ss_pred             cHHHHHHHHHHHHHHHHHh----------C---------ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         37 EYQAASEHYKRTLVLAQDL----------G---------DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        37 ~~~~A~~~~~~al~~~~~~----------~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...++.++++++++..+..          +         +......+...++.+.+..|+.++|++.+++.++...
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p  290 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP  290 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence            3688888898888765432          0         1112355667899999999999999999998886553

The molecular function of this protein is uncertain.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.63  E-value=2.1  Score=20.77  Aligned_cols=26  Identities=12%  Similarity=-0.083  Sum_probs=16.4

Q ss_pred             HHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         69 GNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        69 ~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      |.-....|++++|..+|..+++.+..
T Consensus        13 Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684          13 AVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34455567777777777777765543

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG2114|consensus

Probab=87.59  E-value=3.1  Score=29.67  Aligned_cols=49  Identities=14%  Similarity=0.223  Sum_probs=41.6

Q ss_pred             CchhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          3 VQPNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         3 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      ..|.-|+.+++..+ +......+...-|......|++++|..+|.+++..
T Consensus       348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            35778889998776 66778888889999999999999999999998864

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=87.35  E-value=0.82  Score=28.20  Aligned_cols=36  Identities=22%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      +..+..||.+|...|++..|...|.+++++..+..+
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~  191 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE  191 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH
Confidence            456789999999999999999999999998765443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.20  E-value=5.6  Score=25.09  Aligned_cols=67  Identities=9%  Similarity=-0.036  Sum_probs=47.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736         36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG  102 (104)
Q Consensus        36 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  102 (104)
                      ..++..+..+...++-+.+..........-..+..+++..|+|.+|+......+.-+++.+|.+...
T Consensus        99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li  165 (421)
T COG5159          99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI  165 (421)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence            3455556666666655555444444444556778889999999999999999999999988876543

>KOG0890|consensus

Probab=87.09  E-value=12  Score=30.06  Aligned_cols=70  Identities=10%  Similarity=-0.110  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +-....+.++...|.+.+..|.++.|..+.-+|.+.-        ...+....+-..|.+|+-..|+..+++.+++..
T Consensus      1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            4467889999999999999999999999888776541        346778889999999999999999999997654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.08  E-value=2.4  Score=20.72  Aligned_cols=33  Identities=12%  Similarity=-0.066  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +..+...+.-+...|++++|+.+|++++++.-+
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            345566677777778888888888888776554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.95  E-value=3.6  Score=22.71  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ...++..+...+++.++...+.+++..
T Consensus       205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~  231 (291)
T COG0457         205 LLNLGLLYLKLGKYEEALEYYEKALEL  231 (291)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence            344444444444444444444444433

>KOG0376|consensus

Probab=86.90  E-value=0.36  Score=31.64  Aligned_cols=83  Identities=11%  Similarity=0.018  Sum_probs=58.6

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .|..|+.++.+. .-.+.-+..+.+.+..+...+++..|+.-+.++++.      .+....++...|.+....+.+.+|.
T Consensus        19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHhHHHHHHHH
Confidence            455666555433 333334555666777888888899998888888876      3556678888888888888888888


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      ..|++...+.
T Consensus        93 ~~l~~~~~l~  102 (476)
T KOG0376|consen   93 LDLEKVKKLA  102 (476)
T ss_pred             HHHHHhhhcC
Confidence            8887766543

>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=86.83  E-value=9.2  Score=27.24  Aligned_cols=97  Identities=15%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             CchhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHH-HHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---
Q psy10736          3 VQPNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQ-AASE-HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---   76 (104)
Q Consensus         3 ~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---   76 (104)
                      +++.+|..+++ ...|......++..+.........+. +-.+ ...+....+.+.=..+.+.++.+..+..+|...   
T Consensus       613 EFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~  692 (762)
T PF03635_consen  613 EFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISE  692 (762)
T ss_dssp             HHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TT
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCc
Confidence            46788898888 66788888888888877776665432 2222 223333333333344556677777777777654   


Q ss_pred             -------ChhHHHHHHHHHHHHHHHhcchh
Q psy10736         77 -------DYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        77 -------~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                             |.+..++++++|++++..+-++.
T Consensus       693 ~~~~~~rd~krVlECLQKaLriAds~md~~  722 (762)
T PF03635_consen  693 ETGSFYRDGKRVLECLQKALRIADSCMDPS  722 (762)
T ss_dssp             TTT-B---HHHHHHHHHHHHHHHHCSSSHH
T ss_pred             cccccccChHHHHHHHHHHHHHHHHHhCcc
Confidence                   56789999999999999886643

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.

>KOG2041|consensus

Probab=86.76  E-value=6.8  Score=27.86  Aligned_cols=60  Identities=23%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             HHHHHHhccHHHHHHHHHH------HHHHHHHhCChH----------------HHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736         29 GNSHIFLGEYQAASEHYKR------TLVLAQDLGDRA----------------VEAQACYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus        29 ~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      +.+-...|++++|...|..      |+++..+.+|..                ..-.+..++|..+..+-+|++|.++|.
T Consensus       741 aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  741 AEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             HhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556788888887743      444444444422                233467789999999999999999987


Q ss_pred             HH
Q psy10736         87 RH   88 (104)
Q Consensus        87 ~a   88 (104)
                      .+
T Consensus       821 ~~  822 (1189)
T KOG2041|consen  821 YC  822 (1189)
T ss_pred             hc
Confidence            65

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.12  E-value=6.6  Score=25.18  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..+.++..++.++..+|+.+.|.+.+++|+-.++.
T Consensus        38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~   72 (360)
T PF04910_consen   38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER   72 (360)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999999999999877663

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1497|consensus

Probab=85.95  E-value=6.9  Score=24.97  Aligned_cols=72  Identities=8%  Similarity=0.022  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      +.......+..+|..|...++..+|..+..++.-......++.....--.--+.++..+++|-+|...|-+.
T Consensus       139 d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel  210 (399)
T KOG1497|consen  139 DVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL  210 (399)
T ss_pred             hhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667789999999999999999999999876554444554444443334467777788887776655443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.90  E-value=6.7  Score=24.75  Aligned_cols=67  Identities=18%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....+.-.+..|...|.+.+|+++.++++.+-.-      .-.....+-.++...||--.+...|++.-+..+
T Consensus       278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyerya~vle  344 (361)
T COG3947         278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERYAEVLE  344 (361)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence            3445555677888899999999999998876322      123344555677788888888888887765443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=85.75  E-value=1.4  Score=16.96  Aligned_cols=27  Identities=11%  Similarity=-0.073  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .+..+-..+...|+++.|...++...+
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~   29 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKE   29 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345556666777777777777766553

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.51  E-value=7.9  Score=25.26  Aligned_cols=71  Identities=11%  Similarity=-0.022  Sum_probs=53.9

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh-------hHHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY-------PTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~   94 (104)
                      ....+|......++|+.|...|+....-+....-....+.+.-..|......+..       +....+++.++..+.+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            3566889999999999999999998877765444555566777778887777744       3667788887777766

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG2114|consensus

Probab=85.50  E-value=6  Score=28.38  Aligned_cols=48  Identities=21%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         44 HYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        44 ~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .|.-|+.+++..+ ++.....++..-|.-++.+|++++|..+|-+++..
T Consensus       349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            4555777887765 45667788889999999999999999999888754

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.38  E-value=5.4  Score=23.22  Aligned_cols=69  Identities=20%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHH----------HHH--------Hh--------------CC-hHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLV----------LAQ--------DL--------------GD-RAVEAQACYSL   68 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------~~~--------~~--------------~~-~~~~~~~~~~l   68 (104)
                      ..+....+.+....|+...|+.+|...-.          +++        ..              ++ .+....+.-.|
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            34566777888888999999998887432          110        00              00 11234566789


Q ss_pred             HHHHHHhCChhHHHHHHHHHHH
Q psy10736         69 GNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        69 ~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      |..-+..|++.+|..+|.....
T Consensus       174 glAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc
Confidence            9999999999999999987655

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.27  E-value=3  Score=20.13  Aligned_cols=31  Identities=16%  Similarity=0.088  Sum_probs=21.7

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      +..+...|.-.-..|++++|+.+|.++++.+
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   36 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALEYF   36 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3445555666667788888888888887764

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1953|consensus

Probab=85.26  E-value=0.68  Score=33.34  Aligned_cols=42  Identities=14%  Similarity=0.070  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736         61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG  102 (104)
Q Consensus        61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  102 (104)
                      .+++...+|+.+...|.+..|++.|..|+++.+..+|..+.|
T Consensus       244 LGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg  285 (1235)
T KOG1953|consen  244 LGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLG  285 (1235)
T ss_pred             HHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeeh
Confidence            355666777777777777778888888888777777776655

>KOG1463|consensus

Probab=85.17  E-value=7.9  Score=24.94  Aligned_cols=65  Identities=14%  Similarity=0.013  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhc
Q psy10736         37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE  101 (104)
Q Consensus        37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  101 (104)
                      ..+.-+..+...++-+++..........-..+..+|...++|.+|+......+.-.++.+|+...
T Consensus       103 ~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen  103 GTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            34455555556665555555555555556678889999999999999999999999998887643

>KOG2034|consensus

Probab=84.72  E-value=5.8  Score=28.52  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..+|...|+|+.|+++....         |...-..+...+..++..++|..|.++|-+..+-++
T Consensus       363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE  420 (911)
T KOG2034|consen  363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE  420 (911)
T ss_pred             HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence            3456788888888877766543         223334566667777777777777777766654443

>KOG3785|consensus

Probab=84.67  E-value=8.8  Score=25.04  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=15.0

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKR   47 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~   47 (104)
                      ...+++-++...|.|.+|.....+
T Consensus        93 l~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   93 LGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhh
Confidence            345566666666777776665554

>smart00671 SEL1 Sel1-like repeats

Probab=84.65  E-value=1.8  Score=17.00  Aligned_cols=27  Identities=30%  Similarity=0.484  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHh----CChhHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLL----RDYPTAIDYHLRHLI   90 (104)
Q Consensus        64 ~~~~l~~~~~~~----g~~~~A~~~~~~a~~   90 (104)
                      ++..+|..|..-    .+..+|..+++++.+
T Consensus         3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~   33 (36)
T smart00671        3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE   33 (36)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            456666666432    377888888887764

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=84.46  E-value=2.3  Score=25.53  Aligned_cols=15  Identities=13%  Similarity=0.299  Sum_probs=8.4

Q ss_pred             cHHHHHHHHHHHHHH
Q psy10736         37 EYQAASEHYKRTLVL   51 (104)
Q Consensus        37 ~~~~A~~~~~~al~~   51 (104)
                      -++.|.+.+....+.
T Consensus        48 Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen   48 PFPSARENLQKLFEK   62 (278)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH
Confidence            456677766665555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.27  E-value=3.3  Score=19.84  Aligned_cols=31  Identities=23%  Similarity=0.158  Sum_probs=20.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      +..+...|...-..|++++|+.+|..+++.+
T Consensus         6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l   36 (75)
T cd02656           6 AKELIKQAVKEDEDGNYEEALELYKEALDYL   36 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3344555656666778888888888877763

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.27  E-value=3.4  Score=19.94  Aligned_cols=23  Identities=13%  Similarity=-0.029  Sum_probs=12.3

Q ss_pred             HHHHHhCChhHHHHHHHHHHHHH
Q psy10736         70 NTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        70 ~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .-....|++++|+.+|..+++.+
T Consensus        14 v~~D~~g~y~eA~~~Y~~aie~l   36 (75)
T cd02678          14 IEEDNAGNYEEALRLYQHALEYF   36 (75)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHH
Confidence            44444555555555555555544

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0376|consensus

Probab=84.05  E-value=0.89  Score=29.94  Aligned_cols=61  Identities=13%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      -+-++....-+.++.|+..|.++|++-      +.-+..+.+.+.++...+++..|+.-+.+++++-
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ld------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d   68 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELD------PNCAIYFANRALAHLKVESFGGALHDALKAIELD   68 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcC------CcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence            344566667789999999999999872      2233455666777888888888888888888765

>KOG1308|consensus

Probab=83.81  E-value=0.12  Score=32.56  Aligned_cols=58  Identities=17%  Similarity=0.125  Sum_probs=47.7

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +.-....|.+++|++.+..+|.+      .+..+..+...+.++..+.++..|+..|..++++-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein  178 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN  178 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccC
Confidence            44455668899999999988876      45567788899999999999999999999998764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.65  E-value=3.6  Score=23.25  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=19.4

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRT   48 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~a   48 (104)
                      .-..-|..+...|++.+|+..++..
T Consensus        46 ~~~~~~~l~i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   46 LDLFDGWLHIVRGDWDDALRLLREL   70 (160)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455677888889999998888774

>KOG1464|consensus

Probab=83.62  E-value=4.6  Score=25.23  Aligned_cols=71  Identities=6%  Similarity=-0.086  Sum_probs=52.1

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      -..|..+.+-..-...|++++.+-.....|...+.+.--=|-.+..-|+|++|...|-+|..-+...|.|+
T Consensus       198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR  268 (440)
T KOG1464|consen  198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR  268 (440)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence            34566666777777788888877666666666666666667778888999999998888887777666664

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.47  E-value=8.4  Score=23.91  Aligned_cols=66  Identities=23%  Similarity=0.135  Sum_probs=49.7

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ....++..++..+...|+++.++..+++.+....     ... .++..+=..|...|+...|+..|++...+
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----~~E-~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDP-----YDE-PAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----cch-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4466778888888888999999888888765522     111 34566667889999999999999888773

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.42  E-value=3.9  Score=19.98  Aligned_cols=35  Identities=14%  Similarity=0.059  Sum_probs=26.4

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD   57 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   57 (104)
                      ..+..-|...-..|++++|+++|.++++.+....+
T Consensus         7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn   41 (75)
T cd02680           7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSN   41 (75)
T ss_pred             HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcC
Confidence            33444556666779999999999999999876443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1953|consensus

Probab=83.35  E-value=1  Score=32.55  Aligned_cols=50  Identities=20%  Similarity=0.236  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS   67 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   67 (104)
                      ....+++...+|..+...|++..|++.|..|++.++..+|....+.++-.
T Consensus       241 kksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG  290 (1235)
T KOG1953|consen  241 KKSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDG  290 (1235)
T ss_pred             HhhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccc
Confidence            34668888999999999999999999999999999999997666665554

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=83.34  E-value=8  Score=23.56  Aligned_cols=46  Identities=11%  Similarity=-0.042  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736         41 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus        41 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   86 (104)
                      -.....+++.-.+..+.+.+....+..+|..++..|++.+|+.++-
T Consensus        69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            4445555555552333455556788999999999999999998874

; PDB: 3LKU_E 2WPV_G.

>KOG1070|consensus

Probab=83.01  E-value=12  Score=28.80  Aligned_cols=30  Identities=13%  Similarity=-0.100  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..|..+|...+++++|.++++.+++-++
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            344555566666666666666666665554

>KOG1464|consensus

Probab=82.83  E-value=6.2  Score=24.70  Aligned_cols=100  Identities=14%  Similarity=0.039  Sum_probs=65.7

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-Ch-----HHHHHHHHHHHHHHHHhC
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DR-----AVEAQACYSLGNTYTLLR   76 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g   76 (104)
                      .+|+..++..+...+.......-..+|..|...+++..-.....+...-++... ..     ..+..++..--..|..+.
T Consensus       126 ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qK  205 (440)
T KOG1464|consen  126 EFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQK  205 (440)
T ss_pred             HHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhc
Confidence            456666666666666666666777889999999988887777776655544321 11     112233333345677777


Q ss_pred             ChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736         77 DYPTAIDYHLRHLIIAQQLMDRVGEG  102 (104)
Q Consensus        77 ~~~~A~~~~~~a~~~~~~~~~~~~~~  102 (104)
                      +..+-...|++++.+....+.|..++
T Consensus       206 nNKkLK~lYeqalhiKSAIPHPlImG  231 (440)
T KOG1464|consen  206 NNKKLKALYEQALHIKSAIPHPLIMG  231 (440)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHh
Confidence            88888888999998877777765543

>KOG0687|consensus

Probab=82.75  E-value=10  Score=24.33  Aligned_cols=63  Identities=10%  Similarity=0.055  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhh
Q psy10736         38 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        38 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  100 (104)
                      -++-++-+++.++-+.+.........++.+.+..|...||-+.|.+.+++..+-.-..|.++.
T Consensus        80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD  142 (393)
T KOG0687|consen   80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID  142 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence            355556666666666665444556789999999999999999999999999887766665543

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=82.53  E-value=10  Score=24.17  Aligned_cols=35  Identities=14%  Similarity=0.008  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .+.+++..|......+++.+|+.+++.+....+..
T Consensus       252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~  286 (346)
T cd09247         252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKK  286 (346)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            35577788888888899999999999998865543

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>KOG1839|consensus

Probab=82.51  E-value=5.5  Score=29.76  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+..+.+|..++..+...++.++|+.+-.++.-+....  -++......+.+++...+..+....|...+.++..+.
T Consensus       969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen  969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence            35668889999999999999999999999887665543  3566778889999988888888888998888887654

>KOG2709|consensus

Probab=82.11  E-value=4.2  Score=26.78  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+.|.++...+++++|+.+|++.+.+.
T Consensus        25 ~V~~gl~~dE~~~~e~a~~~Ye~gl~~i   52 (560)
T KOG2709|consen   25 SVEQGLCYDEVNDWENALAMYEKGLNLI   52 (560)
T ss_pred             HHHhhcchhhhcCHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=82.06  E-value=6.1  Score=21.30  Aligned_cols=66  Identities=21%  Similarity=0.163  Sum_probs=43.4

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHh-----CC-hHH----------HHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDL-----GD-RAV----------EAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~-~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ..+......++.+.+++.+.+++.+++..     .+ +|.          ...+...++..+...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            33445556678888888888888876521     11 221          234566778888899999999999999886


Q ss_pred             HH
Q psy10736         91 IA   92 (104)
Q Consensus        91 ~~   92 (104)
                      +-
T Consensus        91 ~d   92 (146)
T PF03704_consen   91 LD   92 (146)
T ss_dssp             HS
T ss_pred             cC
Confidence            53

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=81.04  E-value=13  Score=24.55  Aligned_cols=80  Identities=18%  Similarity=0.022  Sum_probs=50.0

Q ss_pred             hHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          6 NDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         6 ~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +.+.+.++. .+|++.....+..|=..-...|+.+.|+.|.+++........      ++....-......|+|+.|++.
T Consensus       137 ~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~------WA~~AtLe~r~~~gdWd~AlkL  210 (531)
T COG3898         137 EDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP------WAARATLEARCAAGDWDGALKL  210 (531)
T ss_pred             HHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc------hHHHHHHHHHHhcCChHHHHHH
Confidence            334444443 356666655555555556667888888888888776654322      2333333446678999999998


Q ss_pred             HHHHHHH
Q psy10736         85 HLRHLII   91 (104)
Q Consensus        85 ~~~a~~~   91 (104)
                      .+...+.
T Consensus       211 vd~~~~~  217 (531)
T COG3898         211 VDAQRAA  217 (531)
T ss_pred             HHHHHHH
Confidence            8776643

>KOG1070|consensus

Probab=81.02  E-value=13  Score=28.67  Aligned_cols=65  Identities=11%  Similarity=-0.070  Sum_probs=46.6

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+..|.-+|...+.+++|.++++..+.-+++.      ...+...+..+..+++-+.|...+.+|+...++
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            34555667777777788888887766655522      234556677888888888899999999887766

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.86  E-value=4.8  Score=23.09  Aligned_cols=57  Identities=12%  Similarity=-0.006  Sum_probs=42.3

Q ss_pred             HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        33 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....+.+....+.+-+.+..+...++    ..+.+++.++...|+.++|....+++..++.
T Consensus       119 ~~~~~~~~l~~~~~~a~~~l~~~P~~----~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  119 RLPPDPEMLEAYIEWAERLLRRRPDP----NVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34455555555555555566555544    5678889999999999999999999998877

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.75  E-value=4.8  Score=22.56  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=18.7

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTL   49 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al   49 (104)
                      -..-|..+...|++++|+..++...
T Consensus        47 d~~dg~l~i~rg~w~eA~rvlr~l~   71 (153)
T TIGR02561        47 DMFDGWLLIARGNYDEAARILRELL   71 (153)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHhhh
Confidence            3455778888899999988877643

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=80.69  E-value=8.2  Score=21.86  Aligned_cols=65  Identities=11%  Similarity=-0.051  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ......+..+..+-...++.+++...+.- +...+     +........-|.++...|+|.+|+..++...
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvLR-----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDA-LRVLR-----PEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHH-HHHhC-----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            34455666676777777788887766643 33322     2223455677889999999999999998754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=80.58  E-value=11  Score=23.18  Aligned_cols=67  Identities=10%  Similarity=-0.011  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhHHHHHH-hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..--.+|...|..... .++.+.|...|+.++..+..   ...   .+..-...+...|+...+...|++++..
T Consensus        32 ~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~---~~~~Y~~~l~~~~d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   32 RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPD---FWLEYLDFLIKLNDINNARALFERAISS   99 (280)
T ss_dssp             CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HH---HHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence            3345566666666555 45666688888887765432   222   1222235556778888888888887653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2471|consensus

Probab=80.52  E-value=9.2  Score=26.01  Aligned_cols=39  Identities=10%  Similarity=-0.019  Sum_probs=33.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV   60 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   60 (104)
                      ...++|.|..+...|++-.|.+++.++...+.....-|.
T Consensus       335 ~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL  373 (696)
T KOG2471|consen  335 MEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL  373 (696)
T ss_pred             hhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence            557899999999999999999999999999887654443

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.06  E-value=14  Score=24.01  Aligned_cols=90  Identities=12%  Similarity=0.007  Sum_probs=55.5

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC--------------------------
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--------------------------   57 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------------   57 (104)
                      .|+++........+   ...--.+-|.++...++|.++...+.-+-..++...|                          
T Consensus        43 ~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g  119 (449)
T COG3014          43 AYEQSKQFTKKKKN---ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG  119 (449)
T ss_pred             HHHHHHHhhhhhhH---HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence            34555554433322   2222234477888888888877777666554443221                          


Q ss_pred             -hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         58 -RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        58 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                       ....+......|.-|...+|++.|.-.++++.+.-++..
T Consensus       120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AK  159 (449)
T COG3014         120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAK  159 (449)
T ss_pred             hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHH
Confidence             123345667889999999999999888888876554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
4a1s_A	411	Crystallographic Structure Of The Pins:insc Complex		3e-38
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		4e-38
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		4e-38
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		5e-38
3ro3_A	164	Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length		4e-37
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		7e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-04

>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411

Iteration: 1
 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 86/95 (90%)
Query: 7   DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
           +RL+IAREFGD+AAERRANSNLGNSHIFLG+++ A+EHYKRTL LA +LG+R VEAQ+CY
Sbjct: 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307
Query: 67  SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
           SLGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score =  152 bits (385), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272
Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268
Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 211 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 270
Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 271 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 305

>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164

Iteration: 1
 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 86/100 (86%)
Query: 3   VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
           +    RL IA+EFGDKAAER A SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEA
Sbjct: 30  IAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89
Query: 63  QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           Q+CYSLGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 90  QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
          D      A  NLGN++   G+YQ A E+Y++ L L  +       A A Y+LGN Y    
Sbjct: 4  DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN------NASAWYNLGNAYYKQG 57
Query: 77 DYPTAIDYHLRHLII 91
          DY  AI+Y+ + L +
Sbjct: 58 DYQKAIEYYQKALEL 72

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
          NLGN++   G+Y  A E+Y++ L L  +       A+A Y+LGN Y    DY  AI+Y+ 
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 87 RHLII 91
          + L +
Sbjct: 68 KALEL 72

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 12  AREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
           A E+  KA E   N+     NLGN++   G+Y  A E+Y++ L L  +       A+A Y
Sbjct: 28  AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWY 81
Query: 67  SLGNTYTLLRDYPTAIDYHLRHLII 91
           +LGN Y    DY  AI+Y+ + L +
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 12  AREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
           A E+  KA E   N+     NLGN++   G+Y  A E+Y++ L L  +       A+A Y
Sbjct: 28  AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN------NAEAWY 81
Query: 67  SLGNTYTLLRDYPTAIDYHLRHLII 91
           +LGN Y    DY  AI+Y+ + L +
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
           A  NLGN++   G+Y  A E+Y++ L    +L  R+  A+A Y+LGN Y    DY  AI
Sbjct: 2  EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAI 55
Query: 83 DYHLRHLII 91
          +Y+ + L +
Sbjct: 56 EYYQKALEL 64

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
           A  NLGN++   G+Y  A E+Y++ L    +L  R+  A+A Y+LGN Y    DY  AI
Sbjct: 4  EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAI 57
Query: 83 DYHLRHL 89
          +Y+ + L
Sbjct: 58 EYYQKAL 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-30
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-22
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-21
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-29
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-21
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-20
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-15
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-21
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-21
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-18
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-20
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-20
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-19
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-04

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score =  103 bits (260), Expect = 6e-30
 Identities = 70/94 (74%), Positives = 84/94 (89%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L IA+EFGDKAAER A SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYSL
Sbjct: 36  LLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 96  GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 85.3 bits (212), Expect = 1e-22
 Identities = 33/89 (37%), Positives = 60/89 (67%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +AR+  D+A E ++  +LGN++  L +Y+ A +++ + L +AQ+L DR  E +AC+SL
Sbjct: 76  LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 135

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
           GN YT L ++  A+ +  +HL I++++ D
Sbjct: 136 GNAYTALGNHDQAMHFAEKHLEISREVGD 164

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 81.0 bits (201), Expect = 4e-21
 Identities = 35/87 (40%), Positives = 57/87 (65%)

Query: 16  GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75
           G +AA+ RA  NLGN+H  LG ++ A   +++ L++A++ GD+A E  A  +LGN Y  L
Sbjct: 3   GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL 62

Query: 76  RDYPTAIDYHLRHLIIAQQLMDRVGEG 102
            ++ TA +Y+ + L++A+QL DR  E 
Sbjct: 63  GEFETASEYYKKTLLLARQLKDRAVEA 89

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  107 bits (270), Expect = 1e-29
 Identities = 71/97 (73%), Positives = 85/97 (87%)

Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL+IAREFGD+AAERRANSNLGNSHIFLG+++ A+EHYKRTL LA +LG+R VEAQ+CYS
Sbjct: 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
           LGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE   
Sbjct: 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 85.0 bits (211), Expect = 4e-21
 Identities = 38/94 (40%), Positives = 62/94 (65%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           LK+ R+ GD+ A+ RA  NLGN++  LG++QAA EH++  L +A++ GDRA E +A  +L
Sbjct: 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN++  L  +  A +++ R L +A +L +R  E 
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 81.2 bits (201), Expect = 8e-20
 Identities = 33/84 (39%), Positives = 55/84 (65%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +A E G++  E ++  +LGN++  L E+  A E++ R L +AQ+LGDR  EA+AC+SL
Sbjct: 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL 349

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIA 92
           GN ++ +  +  A+ Y  +HL +A
Sbjct: 350 GNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           ++   E  D        S LGN++ +LG+Y  A +++K  L LA+ + DR  EA++  +L
Sbjct: 75  IQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GNT  ++  +  A     RHL +A+QL DR+ EG
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 77.0 bits (190), Expect = 3e-18
 Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 17/111 (15%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQA-----------------ASEHYKRTLVL 51
           L +AR+ GD+ +E RA  NLGN +   G++                   A E Y+  L L
Sbjct: 153 LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212

Query: 52  AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
            +DLGDR  + +AC +LGNTY LL D+  AI++H   L IA++  DR  E 
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 75.8 bits (187), Expect = 8e-18
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +A+   D+  E +++ NLGN+   +G +  A+   +R L LA+ LGDR  E +A Y+L
Sbjct: 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172

Query: 69  GNTYTLLRDYPT-----------------AIDYHLRHLIIAQQLMDRVGEG 102
           GN Y     +                   A++++  +L + + L DR  +G
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
            +        ++     +  G      G+ +A    ++  +    +  D    +     L
Sbjct: 35  SQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQL 92

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN Y  L DY  A+ YH   L +A+ + DR+GE 
Sbjct: 93  GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 6/71 (8%), Positives = 15/71 (21%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          + S    S + LG     +  +             +         G       D    + 
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 84 YHLRHLIIAQQ 94
          +    +    +
Sbjct: 70 FFQAAIQAGTE 80

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  103 bits (259), Expect = 6e-28
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 84.7 bits (210), Expect = 5e-21
 Identities = 35/94 (37%), Positives = 63/94 (67%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +AR+  D+A E ++  +LGN++  L +Y+ A +++ + L +AQ+L DR  E +AC+SL
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN YT L ++  A+ +  +HL I++++ D+ GE 
Sbjct: 314 GNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 83.9 bits (208), Expect = 9e-21
 Identities = 37/94 (39%), Positives = 61/94 (64%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +    GD+AA+ RA  NLGN+H  LG ++ A   +++ L++A++ GD+A E +A  +L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN Y  L ++ TA +Y+ + L++A+QL DR  E 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           +++  E  D        S LGN++ +L +Y  A E++   L LA+ +GD+  EA+A  +L
Sbjct: 36  VQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GNT  +L ++  AI    RHL I+++L D+VGE 
Sbjct: 94  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 72.7 bits (179), Expect = 9e-17
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 20/114 (17%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGE--------------------YQAASEHYKRT 48
           L I+RE  DK  E RA  NLGN +   G+                     QAA + Y+  
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173

Query: 49  LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           L L   LGDRA + +A  +LGNT+ LL ++  A+  H + L+IA++  D+  E 
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 20/114 (17%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +AR  GD+  E +A+ NLGN+   LG +  A    +R L ++++L D+  EA+A Y+L
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133

Query: 69  GNTYTLLRD--------------------YPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN Y                            A+D++  +L +   L DR  +G
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 67.3 bits (165), Expect = 9e-15
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L IA+E  D+  E RA  +LGN++  LG +  A    ++ L +++++GD++ E  A  +L
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353

Query: 69  GNTYTLL-RDYPTAIDYHLRHLIIAQQLMDR 98
            +   +L   Y T       +  I   L   
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEIDSSLNGV 384

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 16  GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75
           G   A     +  G      G+ +A    ++  + +  +  D    +     LGN Y  L
Sbjct: 3   GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYL 60

Query: 76  RDYPTAIDYHLRHLIIAQQLMDRVGEG 102
            DY  A++YH   L +A+ + D++GE 
Sbjct: 61  HDYAKALEYHHHDLTLARTIGDQLGEA 87

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           L+I+RE GDK+ E  A  NL +  + LG  Y   +        +   L     +    +S
Sbjct: 334 LEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHS 393

Query: 68  LGN 70
           + N
Sbjct: 394 MEN 396

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  101 bits (254), Expect = 1e-27
 Identities = 72/96 (75%), Positives = 86/96 (89%)

Query: 8   RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM 103
           LGNTYTLL+DY  AIDYHL+HL IAQ+L DR+GEG 
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 37/94 (39%), Positives = 61/94 (64%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +    GD+AA+ RA  NLGN+H  LG ++ A   +++ L++A++ GD+A E +A  +L
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN Y  L ++ TA +Y+ + L++A+QL DR  E 
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 33/89 (37%), Positives = 60/89 (67%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +AR+  D+A E ++  +LGN++  L +Y+ A +++ + L +AQ+L DR  E +AC+SL
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
           GN YT L ++  A+ +  +HL I++++ D
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEISREVGD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 78.1 bits (193), Expect = 8e-19
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           +++  E  D        S LGN++ +L +Y  A E++   L LA+ +GD+  EA+A  +L
Sbjct: 32  VQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GNT  +L ++  AI    RHL I+++L D+VGE 
Sbjct: 90  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 20/115 (17%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGE--------------------YQAASEHYKRT 48
           L I+RE  DK  E RA  NLGN +   G+                     QAA + Y+  
Sbjct: 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169

Query: 49  LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM 103
           L L   LGDRA + +A  +LGNT+ LL ++  A+  H + L+IA++  D+  E  
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L +AR  GD+  E +A+ NLGN+   LG +  A    +R L ++++L D+  EA+A Y+L
Sbjct: 70  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129

Query: 69  GNTYTLL--------------------RDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           GN Y                            A+D +  +L +   L DR  +G
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.5 bits (150), Expect = 8e-13
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 19  AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
           +A     +  G      G+ +A    ++  + +  +  D    +     LGN Y  L DY
Sbjct: 2   SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYLHDY 59

Query: 79  PTAIDYHLRHLIIAQQLMDRVGEG 102
             A++YH   L +A+ + D++GE 
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEA 83

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 87.7 bits (218), Expect = 3e-23
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYS 67
            + A++ GD  AE RA   +G      G + AA   +     L   L +  +  +   Y 
Sbjct: 53  QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYE 112

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           +        D   A   + + L+ AQQ  D+V   
Sbjct: 113 VATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 79.6 bits (197), Expect = 4e-20
 Identities = 16/93 (17%), Positives = 30/93 (32%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
            +        A    A   LG  + F+  +  A   ++     AQ  GD   E +A + +
Sbjct: 13  RQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
           G    +  ++  A    L    +   L +    
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLA 105

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 77.7 bits (192), Expect = 2e-19
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 9   LKIAREFGDKAAERRAN-SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
            ++     +      AN   +    +  G+   A + Y+++LV AQ   D+   A A   
Sbjct: 93  RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           LG+     ++   A  + LR   I  +L D     
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVN 187

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 64.2 bits (157), Expect = 2e-14
 Identities = 13/70 (18%), Positives = 23/70 (32%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L  A++  D+ A   A   LG+          A +H+ R   +  +L D     +    L
Sbjct: 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRL 193

Query: 69  GNTYTLLRDY 78
                    +
Sbjct: 194 NGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 12/63 (19%), Positives = 19/63 (30%)

Query: 41  ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 100
           A ++          L   A  + A + LG  Y  +  +  A          AQ+  D   
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64

Query: 101 EGM 103
           E  
Sbjct: 65  EHR 67

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 9   LKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
            +I +E         + +S    + + L +Y+ A  H+++   +A+      +  +  Y+
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           +G        Y  AI Y  R + + ++        
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 76.0 bits (187), Expect = 5e-18
 Identities = 16/96 (16%), Positives = 35/96 (36%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
             +A          R   N+G       +Y+ A  ++KR + + ++        QA + +
Sbjct: 211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
              +  L     A +YH + +  +Q+  D +     
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 9/97 (9%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY-S 67
                   D+  +      +  S+ ++ +   + ++ ++   + ++     +    C+  
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
               +  L+ Y  AI +  +   +A+        G  
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 61.8 bits (150), Expect = 6e-13
 Identities = 14/92 (15%), Positives = 34/92 (36%)

Query: 7   DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
             +   +       E   N   G   +   EY +A + +K+       + DR  +A+  +
Sbjct: 88  LEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFF 147

Query: 67  SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98
            +  +Y  ++    ++DY  +   I ++    
Sbjct: 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 35/122 (28%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA------ 62
           + +  E     +  +A   +   H  LG+   A E++ + +  +Q  GD    +      
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 63  -----------------------------QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93
                                             +   Y   +++  A  Y L+   + Q
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370

Query: 94  QL 95
            +
Sbjct: 371 LI 372

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 12/76 (15%), Positives = 22/76 (28%)

Query: 27  NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
            L        E Q         +   Q      +E    +  G      R+Y +AI +  
Sbjct: 68  YLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFK 127

Query: 87  RHLIIAQQLMDRVGEG 102
           +       + DR+ + 
Sbjct: 128 KAESKLIFVKDRIEKA 143

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
           L++A +  +      +  N+ NS+   G+ Q A EH+++   ++++     +  +  + L
Sbjct: 209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGL 267

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98
             T         A  +    L        +
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHK 297

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 9   LKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
           L I +          ++   +  ++     Y  A  H +  L LA D+ +    A +  +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 100
           + N+Y    D   A+++  +   ++++ +  + 
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 58.7 bits (142), Expect = 8e-12
 Identities = 11/97 (11%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYS 67
            K      D   +   +  +  ++  + +   +  H  + L + Q+         Q+ + 
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187

Query: 68  LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
           +   Y   + Y  A+ +    L +A  + +     + 
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 12/89 (13%), Positives = 32/89 (35%)

Query: 7   DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
           + ++  ++      +  +    G       EY  A  +Y+        + D   +A+  +
Sbjct: 86  ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF 145

Query: 67  SLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95
            +   Y  ++    ++ + L+ L I Q  
Sbjct: 146 KVAEAYYHMKQTHVSMYHILQALDIYQNH 174

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA--QACY 66
            K++RE        +    L  +    G+ Q A +  +  L        +  +       
Sbjct: 249 AKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307

Query: 67  SLGNTYTLLRDYPTAIDY 84
           ++       R     + Y
Sbjct: 308 AVYKETVDERKIHDLLSY 325

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 11/103 (10%), Positives = 31/103 (30%), Gaps = 9/103 (8%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---------DRA 59
            +  ++  +        S +   H  + +Y    + Y     + + L             
Sbjct: 39  EQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98

Query: 60  VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
           ++  + +  G      ++Y  AI Y+         + D + + 
Sbjct: 99  LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 8/97 (8%), Positives = 25/97 (25%), Gaps = 1/97 (1%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
                +  E G       A    G   +   +   A   Y++   + ++       A+  
Sbjct: 100 EKASVMYVENGTPDTAAMALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158

Query: 66  YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
                     + +  A     +   + +++ +     
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 6e-07
 Identities = 9/73 (12%), Positives = 23/73 (31%)

Query: 26  SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
           +    +     + + A + Y +      +       A+A    G     L+  P A+ Y 
Sbjct: 40  AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99

Query: 86  LRHLIIAQQLMDR 98
            +  ++  +    
Sbjct: 100 EKASVMYVENGTP 112

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 6/93 (6%), Positives = 20/93 (21%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
             +                     +   ++  A+   ++   + +++ +     + C + 
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
                   DY  A         I          
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCA 234

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 1/86 (1%)

Query: 9   LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
            +            +A    G     L     A ++ ++  V+  + G     A A    
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122

Query: 69  GNTYTLLRDYPTAIDYHLRHLIIAQQ 94
           G     L D   A+  + +   + + 
Sbjct: 123 GKLMEPL-DLSKAVHLYQQAAAVFEN 147

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 8   RLKIAREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE- 61
             K+A  F  +A             +G      GE++ A + +   L   + +G+     
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233

Query: 62  --AQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92
                  +LG+    L+ Y  A+DYH + L++ 
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
             +NLG+    L +Y  A +++++ LVL          A    ++G  ++L+ ++  A+D
Sbjct: 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVD 291

Query: 84  Y 84
           Y
Sbjct: 292 Y 292

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
                +G  +      + A   + + L +A +      +    + +G       ++ TA 
Sbjct: 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAE 213

Query: 83  DYHLRHLIIAQQL 95
            + L  L   + +
Sbjct: 214 KWFLDALEKIKAI 226

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 26  SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
           +NLG+++  L  Y AA +   + L+L+ +      +A    ++   Y   +    AI +
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTN------DANVHTAIALVYLHKKIPGLAITH 572

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 8   RLKIAREFGDKAAERRAN-----SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE- 61
            + +A E+   +           + LG       + Q A  H++  L+L +         
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 62  AQACYSLGNTYTLLRDYPTAIDYH 85
           A    +LG+ Y  L+ Y  AID  
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDAL 539

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 6/58 (10%)

Query: 27  NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
               S    GE           +    +      +A    ++G  Y  +     A  Y
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPE------KAVTWLAVGIYYLCVNKISEARRY 395

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 8   RLKIAREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
           ++  AR +  K++              +S    GE+  A   Y     L Q         
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------H 441

Query: 63  QACYSLGNTYTLLRDYPTAIDY 84
                LG  +  L +   A +Y
Sbjct: 442 LPYLFLGMQHMQLGNILLANEY 463

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
          R   N+G  +  L     A + + R++   + L      A A +  G  Y     Y  AI
Sbjct: 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAI 91

Query: 83 -DY 84
           D 
Sbjct: 92 KDL 94

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 8   RLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
            ++ A     KA E       A+SNL +     G+ Q A  HYK  + ++         A
Sbjct: 24  NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------A 77

Query: 63  QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
            A  ++GNT   ++D   A+  + R + I     D
Sbjct: 78  DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          + +NL N     G  + A   Y++ L +  +       A A  +L +          A+ 
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALM 64

Query: 84 YHLR 87
          ++  
Sbjct: 65 HYKE 68

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 6/59 (10%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
            + N    H +   Y  A E + +   L           +           L    + +
Sbjct: 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLL 312

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 10/75 (13%), Positives = 20/75 (26%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A S LG      GE   +    ++T  +A+          +               TA +
Sbjct: 55  ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114

Query: 84  YHLRHLIIAQQLMDR 98
              +   +  +    
Sbjct: 115 TQEKAFQLINEQHLE 129

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
             +LG +++  G     +E  +R+L  A D        +    LG TY  ++ Y  A+ 
Sbjct: 44 VALHLGIAYVKTGAVDRGTELLERSLADAPDN------VKVATVLGLTYVQVQKYDLAVP 97

Query: 84 Y 84
           
Sbjct: 98 L 98

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
               LG +   LG +  A + +K  L L  +        +   ++  +Y  +  +  A+ 
Sbjct: 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALP 165

Query: 84  Y 84
           +
Sbjct: 166 H 166

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
             + LG +++ + +Y  A     +                  + LG     L  +  AID
Sbjct: 78  VATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAID 131

Query: 84  Y 84
            
Sbjct: 132 S 132

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 35.5 bits (83), Expect = 8e-04
 Identities = 9/59 (15%), Positives = 13/59 (22%), Gaps = 6/59 (10%)

Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
           + G SH   G Y  A    ++                    LG  Y          + 
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTEL 64

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 37.4 bits (88), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          A  NLGN++   G+Y  A E+Y++ L L          A+A Y+LGN Y    DY  AI+
Sbjct: 3  AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIE 56

Query: 84 Y 84
          Y
Sbjct: 57 Y 57

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A  NLGN++   G+Y  A E+Y++ L L          A+A Y+LGN Y    DY  AI+
Sbjct: 71  AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIE 124

Query: 84  Y 84
           Y
Sbjct: 125 Y 125

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          A  NLGN++   G+Y  A E+Y++ L L          A+A Y+LGN Y    DY  AI+
Sbjct: 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIE 90

Query: 84 Y 84
          Y
Sbjct: 91 Y 91

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A  NL N+    G    A + Y   L L          A +  +L N      +   A+ 
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVR 326

Query: 84  YHLR 87
            + +
Sbjct: 327 LYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A  NLGN       +  A   Y R L L+ +       A    +L   Y        AID
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAID 258

Query: 84  Y 84
            
Sbjct: 259 T 259

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A SNLG      GE   A  H+++ + L  +         A  +LGN     R +  A+ 
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LDAYINLGNVLKEARIFDRAVA 224

Query: 84  YHLRHLII 91
            +LR L +
Sbjct: 225 AYLRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 8   RLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
           +L+ A E    A   +        NL  + +  G+ + A + Y   L    DL       
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL------Y 135

Query: 63  QACYSLGNTYTLLRDYPTAIDYHLRHLII 91
                LGN    L     A   +L+ +  
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIET 164

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A SNLGN +   G+ Q A EHY+  L L  D            +L        D   A+ 
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALRLKPDF------IDGYINLAAALVAAGDMEGAVQ 122

Query: 84  Y 84
            
Sbjct: 123 A 123

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           + +NL N     G  + A   Y++ L +  +       A A  +L +          A+ 
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALM 360

Query: 84  Y 84
           +
Sbjct: 361 H 361

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          A  NLGN++   G+Y  A E+Y++ L L  +       A+A Y+LGN Y    DY  AI+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 64

Query: 84 Y 84
          Y
Sbjct: 65 Y 65

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 35.8 bits (84), Expect = 5e-04
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          A  NLGN++   G+Y  A E+Y++ L L  +       A+A Y+LGN Y    DY  AI+
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 98

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 1/100 (1%)

Query: 6   NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQA 64
              L       D        + + N +   G  +   + +++ L   + L  +   + + 
Sbjct: 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198

Query: 65  CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
            Y+      L   Y  ++    + + I+ ++      G +
Sbjct: 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 8/71 (11%), Positives = 22/71 (30%)

Query: 27  NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
           N   +      Y+ +     + + ++  +   A+  Q  Y  G     L      I+   
Sbjct: 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260

Query: 87  RHLIIAQQLMD 97
           +       +++
Sbjct: 261 KKASFFFDILE 271

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
              N  N    + E + A   Y + L L          A A Y  GN Y +   Y  A D
Sbjct: 59  PYINFANLLSSVNELERALAFYDKALELDSSA------ATAYYGAGNVYVVKEMYKEAKD 112

Query: 84  Y 84
            
Sbjct: 113 M 113

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A    G      G    A   +                A A Y+ G TY    +   A++
Sbjct: 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENREKALE 214

Query: 84  Y 84
            
Sbjct: 215 M 215

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A    GN ++    Y+ A + +++ L    +           Y LG     L     A+ 
Sbjct: 93  AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALP 146

Query: 84  Y 84
           Y
Sbjct: 147 Y 147

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
           R   NLG   + + +   A E+++++L L ++             + +     R+Y  A 
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPAR 195

Query: 83  DYHLRHLIIAQQ 94
            Y+        Q
Sbjct: 196 QYYDLFAQGGGQ 207

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 71
            +  D+A +  A   LG  ++  G  + A    ++ L +          A A  +L   
Sbjct: 29 TDKGRDEARD--AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------ADAHAALAVV 80

Query: 72 YTLLRDYPTAIDYHLR 87
          +    +   A + + +
Sbjct: 81 FQTEMEPKLADEEYRK 96

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
            A++ L        E + A E Y++ L            A+   + G      + Y  A 
Sbjct: 72  DAHAALAVVFQTEMEPKLADEEYRKALASDSRN------ARVLNNYGGFLYEQKRYEEAY 125

Query: 83  DY 84
             
Sbjct: 126 QR 127

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----RAVEAQACYSLGNTYTLLRD 77
           R+  NLG S I LG ++ A EH+   L + +          A+      +L    ++L  
Sbjct: 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345

Query: 78  YPTAI 82
                
Sbjct: 346 SDAYG 350

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
           A   LG +     +   A    +R L L  D         A  +L  ++T       A +
Sbjct: 100 AWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALMALAVSFTNESLQRQACE 153

Query: 84  Y 84
            
Sbjct: 154 I 154

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 35.8 bits (84), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
          A  NLGN++   G+Y  A E+Y++ L L  +       A+A Y+LGN Y    DY  AI+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 64

Query: 84 Y 84
          Y
Sbjct: 65 Y 65

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
          ++ +     + L   ++   +Y+ A+   +  L              A       Y  L+
Sbjct: 5  NQVSN--IKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLK 56

Query: 77 DYPTAIDYHLR 87
              A +   +
Sbjct: 57 VNDKAQESFRQ 67

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
            AN N G      G++  A  + KR+L              A   L  T  L      A 
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDAD 167

Query: 83  DYHLRHLIIAQQ 94
            Y  ++    + 
Sbjct: 168 YYFKKYQSRVEV 179

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
             SN+   +I  G+ +   E   + L +  D       ++A     +    L ++  A+ 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDH------SKALLRRASANESLGNFTDAMF 114

Query: 84  Y 84
            
Sbjct: 115 D 115

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
               L       G++  +   +  T +    L       +         T   D+ TAI 
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFDTAIK 399

Query: 84  Y 84
            
Sbjct: 400 Q 400

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 27  NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
           + G  +  L +Y+ A E +++   L  +             L         +  +  +
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAF 366

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI- 82
                G  +    ++  A + Y   +  A +      +A+   +       L  +P AI 
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIA 194

Query: 83  DY 84
           D 
Sbjct: 195 DC 196

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 6/68 (8%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
             + LG      G + AA E +   L L            A  + G           A D
Sbjct: 79  VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQD 132

Query: 84  YHLRHLII 91
             L     
Sbjct: 133 DLLAFYQD 140

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 26  SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
           +N    +    ++    +  ++ + + ++   D  + A+A    GN +    D   A+ +
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 6/58 (10%), Positives = 13/58 (22%), Gaps = 6/58 (10%)

Query: 27  NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
           + G  +  L  Y  A + + +   L  +             L         +      
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETL 360

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 35.7 bits (83), Expect = 9e-04
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 24  ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
                G   +  G+   A + Y+  +                  +G+ +    ++P AI 
Sbjct: 76  DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQ 129

Query: 84  Y 84
           Y
Sbjct: 130 Y 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.69
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.67
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.67
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.66
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.66
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.64
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.59
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.59
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.57
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.53
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.48
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.31
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.26
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.26
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.11
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.05
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.02
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.02
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.01
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.0
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.99
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.98
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.98
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.94
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.93
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.92
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.89
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.87
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.87
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.86
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.84
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.83
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.78
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.78
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.77
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.77
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.75
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.72
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.71
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.71
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.71
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.7
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.68
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.66
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.66
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.65
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.63
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.62
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.6
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.6
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.58
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.58
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.58
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.57
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.54
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.53
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.52
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.51
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.51
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.49
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.49
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.47
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.47
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.45
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.42
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.42
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.37
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.36
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.35
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.3
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.28
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.21
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.2
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.19
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.18
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.13
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.09
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.09
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.02
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.99
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.95
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.95
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.8
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.71
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.7
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.54
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.37
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.3
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.17
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.13
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.07
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.98
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.82
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.77
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.72
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.72
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.51
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.41
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.28
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.14
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.1
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	95.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.78
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.53
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	95.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.43
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.06
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.92
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.83
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	94.58
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	94.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.38
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.01
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.89
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.67
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.66
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	93.56
2o8p_A	227	14-3-3 domain containing protein; signaling protei	93.47
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	93.06
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	92.87
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.52
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	92.4
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	92.37
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	92.34
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	92.18
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	92.08
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	91.79
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	91.72
2r17_C	298	Vacuolar protein sorting-associated protein 35; pr	91.69
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	91.58
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	91.34
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	91.28
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	91.02
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.71
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	89.11
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	88.83
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	88.82
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	88.81
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	88.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	88.12
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.9
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	87.87
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	86.93
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	86.89
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	85.81
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	85.68
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	85.38
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	85.13
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	85.02
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	84.79
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	84.72
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	84.03
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	83.97
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	83.89
3eab_A	89	Spastin; spastin, MIT, ESCRT, alternative splicing	83.7
2npm_A	260	14-3-3 domain containing protein; cell regulator p	82.74
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.58
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	82.13
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.07
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	81.01
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	80.77
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	80.69
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.33

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.69  E-value=2.8e-15  Score=83.62  Aligned_cols=101  Identities=20%  Similarity=0.190  Sum_probs=93.0

Q ss_pred             CchhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      .++.+++.+++..+ ++.....++.++|.++...|++++|+.++++++.+.+..+++...+.++.++|.++...|++++|
T Consensus        87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A           87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence            35778888888888 56688999999999999999999999999999999999999998899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhhccc
Q psy10736         82 IDYHLRHLIIAQQLMDRVGEGM  103 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~~~~~~  103 (104)
                      +.++++++++.+..+++.+.+.
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~  188 (203)
T 3gw4_A          167 QQHWLRARDIFAELEDSEAVNE  188 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999887653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.67  E-value=6.7e-15  Score=78.97  Aligned_cols=97  Identities=71%  Similarity=1.075  Sum_probs=80.4

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.+++.+....++....+.++..+|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+.
T Consensus        31 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  110 (164)
T 3ro3_A           31 AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  110 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            56677777777788888888888888888888888888888888888888888887778888888888888888888888


Q ss_pred             HHHHHHHHHHHhcchhh
Q psy10736         84 YHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~~  100 (104)
                      ++++++++.+..+++..
T Consensus       111 ~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A          111 YHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHccchHh
Confidence            88888888877766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.67  E-value=8e-15  Score=78.67  Aligned_cols=95  Identities=35%  Similarity=0.540  Sum_probs=87.5

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++++++.+....++++....++.++|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+
T Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence            35778888888899999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy10736         83 DYHLRHLIIAQQLMD   97 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~   97 (104)
                      .++++++++.++.++
T Consensus       150 ~~~~~a~~~~~~~~d  164 (164)
T 3ro3_A          150 HFAEKHLEISREVGD  164 (164)
T ss_dssp             HHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999877653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.66  E-value=6.8e-15  Score=82.09  Aligned_cols=98  Identities=23%  Similarity=0.250  Sum_probs=90.1

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      .++++++.+++..++.+....++.++|.++...|++++|+.++++++.+++..+ ++...+.++.++|.++...|++++|
T Consensus        47 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  126 (203)
T 3gw4_A           47 ASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA  126 (203)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            357788888899999999999999999999999999999999999999999988 5657889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhh
Q psy10736         82 IDYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~~~  100 (104)
                      +.++++++++.+..+++..
T Consensus       127 ~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A          127 RQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhccchHH
Confidence            9999999999988877654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.66  E-value=7.6e-15  Score=86.79  Aligned_cols=96  Identities=14%  Similarity=0.015  Sum_probs=88.8

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A   81 (104)
                      .+|.+++.+....++++..+.++.++|.++...|++++|+.++++++.+....+++...+.++.++|.+|... |++++|
T Consensus        58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A  137 (292)
T 1qqe_A           58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA  137 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            3577888888888999999999999999999999999999999999999999999988899999999999996 999999


Q ss_pred             HHHHHHHHHHHHHhcch
Q psy10736         82 IDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~   98 (104)
                      +.+|++++++.+..+++
T Consensus       138 ~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A          138 IDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhCCCh
Confidence            99999999998876544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.64  E-value=1.2e-14  Score=85.79  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=90.1

Q ss_pred             CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC-hhH
Q psy10736          3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD-YPT   80 (104)
Q Consensus         3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~   80 (104)
                      .++++++...+.. ++.+....++.++|.++...|++++|+.++++++++.+..++....+.++.++|.++...|+ +++
T Consensus       176 ~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~  255 (293)
T 3u3w_A          176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            3567777777777 78889999999999999999999999999999999999998888889999999999999995 699


Q ss_pred             HHHHHHHHHHHHHHhcchhhcc
Q psy10736         81 AIDYHLRHLIIAQQLMDRVGEG  102 (104)
Q Consensus        81 A~~~~~~a~~~~~~~~~~~~~~  102 (104)
                      |+.++++++.+++..+++....
T Consensus       256 A~~~~~~Al~i~~~~~~~~~~~  277 (293)
T 3u3w_A          256 IEDAYKKASFFFDILEMHAYKE  277 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGG
T ss_pred             HHHHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999998876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.62  E-value=3.5e-14  Score=86.34  Aligned_cols=94  Identities=16%  Similarity=0.249  Sum_probs=68.4

Q ss_pred             chhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      ++.+|++++...++ .+..+.++.++|.++...|++++|+.++++++++.++.+++...+.++.++|.+|...|++++|+
T Consensus       165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            45666666666665 66677777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcc
Q psy10736         83 DYHLRHLIIAQQLMD   97 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~   97 (104)
                      .++++++++.+..++
T Consensus       245 ~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          245 PYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcc
Confidence            777777777766655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.62  E-value=3.9e-14  Score=86.09  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             chhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      ++.+++++....++ .+..+.++.++|.++...|++++|++++++++++.++.+++...+.++.++|.+|...|++++|+
T Consensus       163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~  242 (378)
T 3q15_A          163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV  242 (378)
T ss_dssp             HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            46677777777665 66788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcchh
Q psy10736         83 DYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~~~   99 (104)
                      .++++++++.+..+++.
T Consensus       243 ~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          243 EHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHhhCChh
Confidence            88888888887766554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.62  E-value=3.3e-14  Score=86.46  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=90.3

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++++++++....++.+..+.++.++|.++...|++++|+.++++++.+.+..++.+....++.++|.++...|++++|+
T Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  284 (383)
T 3ulq_A          205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH  284 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence            45788899999999999999999999999999999999999999999999999885566899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhh
Q psy10736         83 DYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~~~~  100 (104)
                      .++++++++.+..+++..
T Consensus       285 ~~~~~al~~~~~~~~~~~  302 (383)
T 3ulq_A          285 EYHSKGMAYSQKAGDVIY  302 (383)
T ss_dssp             HHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHH
Confidence            999999999988877654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.60  E-value=5.5e-14  Score=83.61  Aligned_cols=93  Identities=9%  Similarity=-0.013  Sum_probs=67.8

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++++++.+....++....+.++.++|.++.. |++++|+.++++++++.+..+++.....++.++|.++...|++++|+.
T Consensus        98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A           98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4566666666677777777777777777776 777777777777777777776666666777777777777777777777


Q ss_pred             HHHHHHHHHHHhcc
Q psy10736         84 YHLRHLIIAQQLMD   97 (104)
Q Consensus        84 ~~~~a~~~~~~~~~   97 (104)
                      +|++++.+....+.
T Consensus       177 ~~~~al~~~~~~~~  190 (307)
T 2ifu_A          177 SLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCC
Confidence            77777777666544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.59  E-value=2.2e-14  Score=85.35  Aligned_cols=96  Identities=11%  Similarity=-0.032  Sum_probs=88.6

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++.+++.+....++....+.++.++|.++...|++++|+.++++++.+.+..+++...+.++.++|.+|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            357788888889999999999999999999999999999999999999999999998889999999999998 9999999


Q ss_pred             HHHHHHHHHHHHhcchh
Q psy10736         83 DYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~~~   99 (104)
                      .+|++++++.+..+++.
T Consensus       136 ~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCChh
Confidence            99999999998876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.59  E-value=3.8e-14  Score=86.16  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=88.7

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++++++++++..++....+.++.++|.++...|++++|+.++++++.+.+..+++.. ..++.++|.++...|++++|+
T Consensus       203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHH
Confidence            4678899999999999999999999999999999999999999999999999888877 899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchh
Q psy10736         83 DYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~~~   99 (104)
                      .++++++++.+..+++.
T Consensus       282 ~~~~~al~~~~~~~~~~  298 (378)
T 3q15_A          282 QFIEEGLDHITARSHKF  298 (378)
T ss_dssp             HHHHHHHHHCCTTCCSC
T ss_pred             HHHHHHHHHHHHcCCHH
Confidence            99999999987766653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=1.7e-14  Score=85.13  Aligned_cols=96  Identities=10%  Similarity=0.044  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++++.+....++....+.++.++|.+|...|++++|+.++++++..++.. ++....+.++.++|.+|...|++++|+.
T Consensus       138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~  217 (293)
T 3u3w_A          138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334444333345666678899999999999999999999999999999887 6777888899999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhh
Q psy10736         84 YHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~~  100 (104)
                      ++++++++.+..++...
T Consensus       218 ~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          218 QVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHcCcHHH
Confidence            99999999988766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.57  E-value=9.1e-14  Score=82.06  Aligned_cols=97  Identities=12%  Similarity=0.082  Sum_probs=83.9

Q ss_pred             chhHHHHHHHHhCCHHH-HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH-
Q psy10736          4 QPNDRLKIAREFGDKAA-ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA-   81 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-   81 (104)
                      ++++++.+.+..++.+. ...+++++|.++...|++++|+.++++++.+....++....+.++.++|.+|...|++++| 
T Consensus       177 ~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai  256 (293)
T 2qfc_A          177 LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI  256 (293)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            56777777776665443 3489999999999999999999999999999988777777789999999999999999999 


Q ss_pred             HHHHHHHHHHHHHhcchhh
Q psy10736         82 IDYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~~~  100 (104)
                      ..++++++.+++..+++..
T Consensus       257 ~~~~~~Al~~~~~~~~~~~  275 (293)
T 2qfc_A          257 EDAYKKASFFFDILEMHAY  275 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCcHhh
Confidence            8889999999999887643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.53  E-value=3.1e-13  Score=84.07  Aligned_cols=91  Identities=8%  Similarity=-0.019  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +++++++.+..  .+++..+.++.++|.+|..+|++++|+.++++++++.++.  .+.+..+..++++|.+|..+|++++
T Consensus       321 ~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~e  400 (433)
T 3qww_A          321 CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAA  400 (433)
T ss_dssp             HHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHH
Confidence            44444444332  4678899999999999999999999999999999998875  3567789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy10736         81 AIDYHLRHLIIAQQL   95 (104)
Q Consensus        81 A~~~~~~a~~~~~~~   95 (104)
                      |+.++++|+++.+..
T Consensus       401 A~~~~~~Al~i~~~~  415 (433)
T 3qww_A          401 GEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998865

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.52  E-value=4.6e-13  Score=79.13  Aligned_cols=94  Identities=13%  Similarity=0.011  Sum_probs=85.2

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHh-ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      .++++++.+....++....+.++.++|.++... |++++|+.+|++++++.+..+++.....++.++|.++...|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            357888999999999999999999999999996 9999999999999999998888777788999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy10736         82 IDYHLRHLIIAQQLM   96 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~   96 (104)
                      +.+|++++++....+
T Consensus       178 ~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999998765443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=9.5e-13  Score=79.73  Aligned_cols=96  Identities=34%  Similarity=0.552  Sum_probs=64.9

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++++++.+....++......++..+|.++...|++++|+.++++++.+....+++.....++..+|.++...|++++|+.
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34555666666666666666777777777777777777777777777766666666666667777777777777777777


Q ss_pred             HHHHHHHHHHHhcchh
Q psy10736         84 YHLRHLIIAQQLMDRV   99 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~   99 (104)
                      ++++++++.+..+++.
T Consensus       329 ~~~~al~~~~~~~~~~  344 (406)
T 3sf4_A          329 FAEKHLEISREVGDKS  344 (406)
T ss_dssp             HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhcCCc
Confidence            7777777766665443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=1e-12  Score=79.55  Aligned_cols=96  Identities=38%  Similarity=0.651  Sum_probs=69.9

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.+++.+....++.+....++.++|.++...|++++|+.++++++.+....+++...+.++.++|.++...|++++|+.
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            35556666666677777777777777777777777777777777777777777777667777777777777777777777


Q ss_pred             HHHHHHHHHHHhcchh
Q psy10736         84 YHLRHLIIAQQLMDRV   99 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~   99 (104)
                      ++++++.+.+..+++.
T Consensus       249 ~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCcCch
Confidence            7777777776665543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.51  E-value=1e-13  Score=81.85  Aligned_cols=83  Identities=12%  Similarity=0.095  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+......++.++|.+|...|++++|+.++++++++.+..++... ...++.++|.+|...|++++|+.++++++++.+.
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            556667889999999999999999999999999999888765443 3489999999999999999999999999999876


Q ss_pred             hcch
Q psy10736         95 LMDR   98 (104)
Q Consensus        95 ~~~~   98 (104)
                      .++.
T Consensus       229 ~~~~  232 (293)
T 2qfc_A          229 INSM  232 (293)
T ss_dssp             TTBC
T ss_pred             cCcH
Confidence            5544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.50  E-value=1.4e-12  Score=76.93  Aligned_cols=95  Identities=73%  Similarity=1.089  Sum_probs=68.1

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++++++.+....++......++.++|.++...|++++|+.++++++.+....+++.....++..+|.++...|++++|+.
T Consensus       205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (338)
T 3ro2_A          205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  284 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            56667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcch
Q psy10736         84 YHLRHLIIAQQLMDR   98 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~   98 (104)
                      ++++++++.+..+++
T Consensus       285 ~~~~a~~~~~~~~~~  299 (338)
T 3ro2_A          285 YHLKHLAIAQELKDR  299 (338)
T ss_dssp             HHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhcCCc
Confidence            777777776666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=2.2e-12  Score=76.03  Aligned_cols=97  Identities=37%  Similarity=0.638  Sum_probs=73.3

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++++++.+....++.+....++.++|.++...|++++|+.++++++.+.+..+++...+.++.++|.++...|++++|+
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            35677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcchh
Q psy10736         83 DYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        83 ~~~~~a~~~~~~~~~~~   99 (104)
                      .++++++++....+++.
T Consensus       244 ~~~~~al~~~~~~~~~~  260 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhhcchh
Confidence            77777777777665544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=9.6e-13  Score=80.20  Aligned_cols=96  Identities=34%  Similarity=0.519  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +++++.+....++......++..+|.++...|++++|+.++++++.+....++......++..+|.++...|++++|..+
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  365 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY  365 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            44555555555555555666666666666666666666666666666666665555566666666666666666666666


Q ss_pred             HHHHHHHHHHhcchhh
Q psy10736         85 HLRHLIIAQQLMDRVG  100 (104)
Q Consensus        85 ~~~a~~~~~~~~~~~~  100 (104)
                      +++++++.+..+++..
T Consensus       366 ~~~al~~~~~~~~~~~  381 (411)
T 4a1s_A          366 AEQHLQLAXXXXXXXX  381 (411)
T ss_dssp             HHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHhhcccchh
Confidence            6666666665555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.48  E-value=2.3e-12  Score=78.50  Aligned_cols=95  Identities=39%  Similarity=0.598  Sum_probs=68.5

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.+++.+....++.+....++.++|.++...|++++|+.++++++.+....++......++.++|.++...|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            34555566666667777777777777777777777777777777777777777766667777777777777777777777


Q ss_pred             HHHHHHHHHHHhcch
Q psy10736         84 YHLRHLIIAQQLMDR   98 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~   98 (104)
                      ++++++.+....+++
T Consensus       285 ~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          285 HYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCH
Confidence            777777777665444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.48  E-value=1.4e-12  Score=82.27  Aligned_cols=91  Identities=15%  Similarity=0.002  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +++++++.+..  .+++..+.++.++|.+|..+|++++|+.++++++++.++.  .+.+..+..++++|.+|..+|++++
T Consensus       332 ~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~e  411 (490)
T 3n71_A          332 CRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEV  411 (490)
T ss_dssp             HHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH
Confidence            34444444332  3678899999999999999999999999999999998875  3467789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy10736         81 AIDYHLRHLIIAQQL   95 (104)
Q Consensus        81 A~~~~~~a~~~~~~~   95 (104)
                      |+.++++|+++.+..
T Consensus       412 A~~~~~~Al~i~~~~  426 (490)
T 3n71_A          412 GHGMICKAYAILLVT  426 (490)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.46  E-value=3.1e-12  Score=74.01  Aligned_cols=93  Identities=16%  Similarity=0.093  Sum_probs=83.4

Q ss_pred             CchhHHHHHHHHhC--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCCh
Q psy10736          3 VQPNDRLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus         3 ~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      .++++++++++...  +.+....++..+|.++...|++++|+.++++++.+.++.  ++.+....++.++|.++...|++
T Consensus        22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  101 (283)
T 3edt_B           22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY  101 (283)
T ss_dssp             HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence            46788888887664  557889999999999999999999999999999999887  66677889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy10736         79 PTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        79 ~~A~~~~~~a~~~~~~~   95 (104)
                      ++|+.++++++++.++.
T Consensus       102 ~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B          102 KEAEPLCKRALEIREKV  118 (283)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.44  E-value=4.9e-12  Score=68.96  Aligned_cols=76  Identities=13%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHH----HHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQAC----YSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ....++.++|.++..+|++++|+..++++++++.+.+. .+....++    +++|.++..+|++++|+..|++++++...
T Consensus        55 ~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            45669999999999999999999999999998665543 22334566    99999999999999999999999998765


Q ss_pred             h
Q psy10736         95 L   95 (104)
Q Consensus        95 ~   95 (104)
                      .
T Consensus       135 d  135 (159)
T 2hr2_A          135 R  135 (159)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=3.2e-12  Score=67.21  Aligned_cols=88  Identities=11%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      |++|+..+++. ...|....++.++|.++...|++++|+..+++++++..... .....+.++.++|.++...|++++|+
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            45566555432 11233466899999999999999999999999999987764 44556789999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      ++|++++...
T Consensus       104 ~~~~kal~~~  113 (127)
T 4gcn_A          104 QWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhhC
Confidence            9999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.43  E-value=8.7e-12  Score=77.56  Aligned_cols=91  Identities=14%  Similarity=0.057  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHh---------CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREF---------GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYT   73 (104)
Q Consensus         5 ~~~a~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~   73 (104)
                      +++|+..+++.         .+++..+.++.+++.+|..+|++++|+.++++++++.++.  .+.+..+..++++|.+|.
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~  382 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL  382 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence            45566555433         3568899999999999999999999999999999998875  456778999999999999


Q ss_pred             HhCChhHHHHHHHHHHHHHHHh
Q psy10736         74 LLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .+|++++|+.++++|+++.+..
T Consensus       383 ~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          383 HQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.41  E-value=1.5e-11  Score=71.15  Aligned_cols=92  Identities=22%  Similarity=0.080  Sum_probs=80.0

Q ss_pred             chhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG--DRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      ++++++.+.+..  ++.+....++.++|.++...|++++|+.++.+++.+.++..  +.+....++.++|.++...|+++
T Consensus        65 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  144 (283)
T 3edt_B           65 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE  144 (283)
T ss_dssp             HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence            456667766666  67788899999999999999999999999999999988763  33567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy10736         80 TAIDYHLRHLIIAQQL   95 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~~   95 (104)
                      +|+.++++++++.+..
T Consensus       145 ~A~~~~~~al~~~~~~  160 (283)
T 3edt_B          145 EVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999997665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=6.7e-12  Score=65.99  Aligned_cols=73  Identities=12%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      .+..+.++.++|+.+...|++++|+.+|++++++..      ....++.++|.+|..+|++++|+..+++++++.+...
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            345677899999999999999999999999998721      2256889999999999999999999999999877653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.37  E-value=3.5e-11  Score=72.75  Aligned_cols=94  Identities=9%  Similarity=-0.085  Sum_probs=78.4

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHhCChhHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR--AVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      ++.+++.+....++......++.++|.++...|++++|+.++++++.+.+..+++  +....++.++|.++...|++++|
T Consensus        75 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A           75 LMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            4677778888888888888888999999999999999999999999988887765  55667788899999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy10736         82 IDYHLRHLIIAQQLMD   97 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~   97 (104)
                      +.++++++++.+..++
T Consensus       155 ~~~~~~al~~~~~~~~  170 (373)
T 1hz4_A          155 EASARSGIEVLSSYQP  170 (373)
T ss_dssp             HHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHhhccCc
Confidence            9999999888766544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=2.7e-11  Score=71.01  Aligned_cols=92  Identities=16%  Similarity=0.101  Sum_probs=80.3

Q ss_pred             chhHHHHHHHHhC--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      ++++++.++...+  +.+....++..+|.++...|++++|+.++++++.+.++.  ++......++.++|.++...|+++
T Consensus        49 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  128 (311)
T 3nf1_A           49 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK  128 (311)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH
Confidence            4556666666554  677888999999999999999999999999999999887  666777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy10736         80 TAIDYHLRHLIIAQQL   95 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~~   95 (104)
                      +|+.++++++++.+..
T Consensus       129 ~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A          129 EAEPLCKRALEIREKV  144 (311)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=8.2e-11  Score=68.97  Aligned_cols=92  Identities=25%  Similarity=0.174  Sum_probs=80.8

Q ss_pred             chhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      ++++++.+.+..  ++.+....++..+|.++...|++++|+.++++++.+.+..  ++......++.++|.++...|+++
T Consensus        91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  170 (311)
T 3nf1_A           91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE  170 (311)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence            456666666665  6678889999999999999999999999999999998876  666777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy10736         80 TAIDYHLRHLIIAQQL   95 (104)
Q Consensus        80 ~A~~~~~~a~~~~~~~   95 (104)
                      +|+.++++++++.+..
T Consensus       171 ~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          171 EVEYYYQRALEIYQTK  186 (311)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=1.4e-11  Score=76.32  Aligned_cols=85  Identities=13%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ...+....+.+|+.+|.++...|++++|++++++++++.+....   .+..+.++.++|.+|..+|++++|+.+++++++
T Consensus        43 ~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~  122 (472)
T 4g1t_A           43 EFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH  122 (472)
T ss_dssp             TSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            34567777889999999999999999999999999999887643   233467899999999999999999999999999


Q ss_pred             HHHHhcch
Q psy10736         91 IAQQLMDR   98 (104)
Q Consensus        91 ~~~~~~~~   98 (104)
                      +.+....+
T Consensus       123 i~~~~~~~  130 (472)
T 4g1t_A          123 VCEKFSSP  130 (472)
T ss_dssp             HHHHSCCS
T ss_pred             HhHhcccc
Confidence            98876543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.31  E-value=2.6e-11  Score=65.84  Aligned_cols=71  Identities=11%  Similarity=0.045  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+....++.++|.++...|++++|+.++.+++.+-      +....+++.+|.++...|++++|+..|++++.+.+.
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            55667899999999999999999999999999872      223578999999999999999999999999988544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.31  E-value=3.1e-11  Score=60.88  Aligned_cols=73  Identities=18%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      ...++..+|.++...|++++|+.++++++++...      ...++.++|.++...|++++|+..|++++++.+..++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence            3567899999999999999999999999876322      235789999999999999999999999999988776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.31  E-value=1.1e-11  Score=65.16  Aligned_cols=83  Identities=13%  Similarity=0.053  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      |++|+..+++. ...|....++.++|.++...|++++|+..+++++++-      +....++.++|.++...|++++|+.
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~~~~~~A~~  102 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD------SKFIKGYIRKAACLVAMREWSKAQR  102 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHCCCHHHHHH
Confidence            45566555432 2223345678888888888899999999888888761      1224678889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .|++++++-+
T Consensus       103 ~~~~al~l~P  112 (126)
T 4gco_A          103 AYEDALQVDP  112 (126)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHHCc
Confidence            9999987743

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.30  E-value=2.4e-11  Score=62.75  Aligned_cols=83  Identities=12%  Similarity=0.102  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHh-CC---HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF-GD---KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +++|+..+++. ..   .+....++.++|.++...|++++|+.++++++.....      ...++.++|.++...|++++
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCCHHH
Confidence            34455544433 22   5788899999999999999999999999999877322      24678999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy10736         81 AIDYHLRHLIIAQ   93 (104)
Q Consensus        81 A~~~~~~a~~~~~   93 (104)
                      |+..++++++...
T Consensus        80 A~~~~~~al~~~p   92 (117)
T 3k9i_A           80 GVELLLKIIAETS   92 (117)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999998753

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.29  E-value=7.2e-11  Score=63.63  Aligned_cols=84  Identities=12%  Similarity=0.057  Sum_probs=65.9

Q ss_pred             hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++++...+ .....+.....++.+|.+|...|++++|++++++++.+-      +....++.++|.++...|++++|+.
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------ERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCchHHHHH
Confidence            456776554 445677778888899999999999999999999988762      1224678889999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      +|++++++.+.
T Consensus        87 ~~~~al~~~p~   97 (150)
T 4ga2_A           87 CYRRSVELNPT   97 (150)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHHhCCC
Confidence            99999877543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.27  E-value=7.4e-11  Score=61.94  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .|..+..+.++|+.+...|++++|+.+|++++++.      +....++.++|.++..+|++++|+..+++++++-.
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence            46778899999999999999999999999998762      12246889999999999999999999999998743

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.26  E-value=1.3e-11  Score=66.93  Aligned_cols=83  Identities=11%  Similarity=0.035  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...|....++.++|.++...|++++|+.+|++++.+...      ...++.++|.++...|++++|+.
T Consensus        52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------~~~~~~~lg~~~~~lg~~~eA~~  125 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYTPVFHTGQCQLRLKAPLKAKE  125 (151)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------CCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHH
Confidence            45555555433 112334567888888888899999999999888876322      23567889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      +|++++++..
T Consensus       126 ~~~~al~l~~  135 (151)
T 3gyz_A          126 CFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999988753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.26  E-value=2.3e-10  Score=69.13  Aligned_cols=83  Identities=13%  Similarity=-0.028  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ++......++..+|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+.++++++++.+..
T Consensus        47 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  126 (373)
T 1hz4_A           47 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ  126 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            34556778899999999999999999999999999999999998889999999999999999999999999999999876


Q ss_pred             cch
Q psy10736         96 MDR   98 (104)
Q Consensus        96 ~~~   98 (104)
                      +++
T Consensus       127 ~~~  129 (373)
T 1hz4_A          127 HLE  129 (373)
T ss_dssp             TCT
T ss_pred             ccc
Confidence            553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=3.6e-10  Score=69.35  Aligned_cols=95  Identities=12%  Similarity=0.057  Sum_probs=86.2

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.+++.+....++......++.++|.++...|++++|+.++.+++......++....+.++..+|.+|...|++.+|..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          117 VCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence            46677778888888888899999999999999999999999999999998888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcch
Q psy10736         84 YHLRHLIIAQQLMDR   98 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~   98 (104)
                      ++++++.+....+++
T Consensus       197 ~~~~al~~~~~~~~~  211 (434)
T 4b4t_Q          197 SLTAARTAANSIYCP  211 (434)
T ss_dssp             HHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhhcCCCc
Confidence            999999998877654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.9e-10  Score=59.84  Aligned_cols=84  Identities=12%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..+++. ...+....++.++|.++...|++++|+..+++++.+..      ....++.++|.++...|++++|+.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~   93 (126)
T 3upv_A           20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------NFVRAYIRKATAQIAVKEYASALE   93 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHhCHHHHHH
Confidence            45566555432 11223357899999999999999999999999987621      124678999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      .+++++++...
T Consensus        94 ~~~~al~~~p~  104 (126)
T 3upv_A           94 TLDAARTKDAE  104 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhCcc
Confidence            99999998744

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.16  E-value=1.1e-09  Score=59.75  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-----C-hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-----D-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..+.+.|+.+...|++++|+..|++++.+.....     + .+..+.++.++|.++..+|++++|+.+|+++++++.
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            466789999999999999999999999999876521     1 122356999999999999999999999999999843

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.15  E-value=5.6e-10  Score=60.46  Aligned_cols=73  Identities=8%  Similarity=0.069  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...|.....++.+|.++...|++++|+.+|++++.+-      +....++.++|.++...|++++|+..|++++.+.+.
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            3446678889999999999999999999999998762      222467899999999999999999999999987544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.15  E-value=2.1e-10  Score=61.09  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..++.. ...+....++..+|.++...|++++|+.++++++.+..  .    ...++.++|.++...|++++|+.
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--N----EPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--C----CcHHHHHHHHHHHHcCCHHHHHH
Confidence            45666655433 11223356788999999999999999999999987632  1    13567899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10736         84 YHLRHLIIAQQL   95 (104)
Q Consensus        84 ~~~~a~~~~~~~   95 (104)
                      +|++++++....
T Consensus       108 ~~~~al~~~p~~  119 (142)
T 2xcb_A          108 GFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCC
Confidence            999999887643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.14  E-value=9.3e-10  Score=56.41  Aligned_cols=73  Identities=22%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      ....++.++|.++...|++++|+.++++++....      ....++.++|.++...|++++|+..|++++++....++.
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ   89 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccH
Confidence            3456889999999999999999999999987632      124578899999999999999999999999998876654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.13  E-value=1.9e-10  Score=62.52  Aligned_cols=87  Identities=15%  Similarity=0.017  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....++.++|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~  100 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP------KYSKAWSRLGLARFDMADYKGAKE  100 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHH
Confidence            45566555433 11123467889999999999999999999999988732      124688999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy10736         84 YHLRHLIIAQQLMD   97 (104)
Q Consensus        84 ~~~~a~~~~~~~~~   97 (104)
                      +|++++++.....+
T Consensus       101 ~~~~al~~~p~~~~  114 (164)
T 3sz7_A          101 AYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHHSSSCC
T ss_pred             HHHHHHHhCCCchH
Confidence            99999988755443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.11  E-value=2.1e-09  Score=55.49  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +.+|+..++..- ..+....++..+|.++...|++++|+.++++++...... .+......++.++|.++...|++++|+
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   99 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI   99 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            445555444321 112235678999999999999999999999999988764 344444788999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      .++++++++.
T Consensus       100 ~~~~~~~~~~  109 (131)
T 1elr_A          100 HFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999864

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.11  E-value=1.1e-09  Score=59.30  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC------------hHHHHHHHHHHHHHHHHhCChhHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD------------RAVEAQACYSLGNTYTLLRDYPTAIDYH   85 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~   85 (104)
                      ....+..+...|..+...|++++|+.+|.+++.+......            .+....++.++|.++...|++++|+.++
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3346778999999999999999999999999998665321            2334678999999999999999999999


Q ss_pred             HHHHHHH
Q psy10736         86 LRHLIIA   92 (104)
Q Consensus        86 ~~a~~~~   92 (104)
                      ++++.+-
T Consensus        87 ~~al~~~   93 (162)
T 3rkv_A           87 SEVLKRE   93 (162)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.11  E-value=3e-10  Score=61.09  Aligned_cols=84  Identities=13%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..++.. ...+....++.++|.++...|++++|+.++++++.+...      ...+++++|.++...|++++|+.
T Consensus        37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX------EPRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHHcCCHHHHHH
Confidence            45566555433 112233556788899999999999999999998876321      13567899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      +|++++++...
T Consensus       111 ~~~~al~~~p~  121 (148)
T 2vgx_A          111 GLFLAQELIAN  121 (148)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHCcC
Confidence            99999988654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=1.1e-09  Score=53.55  Aligned_cols=69  Identities=36%  Similarity=0.512  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ++.....+..+|.++...|++++|+.++++++....      ....++.++|.++...|++++|+.++++++++.
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            345667889999999999999999999999987631      124678899999999999999999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.07  E-value=7.8e-10  Score=59.47  Aligned_cols=74  Identities=15%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         15 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        15 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ....+.....+..+|..+...|++++|+..+++++....      ....++.++|.++...|++++|+..|++++.+.+.
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            344466778899999999999999999999999887521      12467789999999999999999999999987543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.07  E-value=2.1e-10  Score=62.48  Aligned_cols=85  Identities=14%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccH----------HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEY----------QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY   72 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   72 (104)
                      .|++|+..++.. ...|....++.++|.++...+++          ++|+..|++++.+      .+....+++++|++|
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHHHHHHHHHHH
Confidence            355666554432 23344567889999999998875          5888988888877      223457899999999


Q ss_pred             HHhC-----------ChhHHHHHHHHHHHHHHH
Q psy10736         73 TLLR-----------DYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        73 ~~~g-----------~~~~A~~~~~~a~~~~~~   94 (104)
                      ...|           ++++|+.+|++|+++-..
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            9875           899999999999987543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=4.5e-09  Score=66.50  Aligned_cols=90  Identities=10%  Similarity=-0.052  Sum_probs=77.7

Q ss_pred             chhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-C-ChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-G-DRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      ++++++++.+..  .+++..+..+++||.+|..+|++++|+.++++|+++.+.. | +.+.......+++.++..++.++
T Consensus       373 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          373 YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            466777766554  4778999999999999999999999999999999998875 3 45667788899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy10736         80 TAIDYHLRHLIIAQ   93 (104)
Q Consensus        80 ~A~~~~~~a~~~~~   93 (104)
                      +|+..|+++.+.+.
T Consensus       453 ~ae~~~~~~~~~~~  466 (490)
T 3n71_A          453 QNEFMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987663

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.05  E-value=2.2e-09  Score=60.57  Aligned_cols=83  Identities=12%  Similarity=-0.017  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHH----------------hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSN----------------LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS   67 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   67 (104)
                      +.+|+..+++. ...|....++..                +|.++...|++++|+..+++++.+..      .-..++.+
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~   93 (208)
T 3urz_A           20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP------NNVDCLEA   93 (208)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHH
Confidence            45666655443 223344556666                99999999999999999999987622      22468899


Q ss_pred             HHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         68 LGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        68 l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +|.++...|++++|+.+|++++++.+
T Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~P  119 (208)
T 3urz_A           94 CAEMQVCRGQEKDALRMYEKILQLEA  119 (208)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999998744

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.05  E-value=1.3e-09  Score=57.10  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..++.. ...+....++.++|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~   98 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------QSVKAHFFLGQCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHHHhhHHHHHH
Confidence            45555544432 11123356899999999999999999999999987632      124678999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      ++++++++.+.
T Consensus        99 ~~~~a~~~~p~  109 (137)
T 3q49_B           99 NLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHChh
Confidence            99999998876

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.05  E-value=7.7e-10  Score=60.85  Aligned_cols=67  Identities=24%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..++..+|.++...|++++|++.+++++++.      +....++.++|.+|...|++++|+.+|++++++-+.
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            4578889999999999999999999998762      122468899999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.1e-09  Score=55.37  Aligned_cols=68  Identities=18%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...+..+|.++...|++++|+.++++++.+...      ...++.++|.++...|++++|+..+++++++.+..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            457889999999999999999999999876221      24678999999999999999999999999775443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.04  E-value=2.3e-09  Score=55.69  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..+..+|..+...|++++|+.++++++.+..      ....++.++|.++...|++++|+..+++++++..
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   69 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP   69 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            456789999999999999999999999987632      1247889999999999999999999999998743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.04  E-value=1.9e-09  Score=65.97  Aligned_cols=71  Identities=17%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..+....++.++|.++...|++++|+.++++++++.      +....++.++|.+|...|++++|+.+|++++++..
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            566778899999999999999999999999998752      12357889999999999999999999999998753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.04  E-value=5.7e-09  Score=54.11  Aligned_cols=86  Identities=14%  Similarity=0.016  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +.+|+..++..    ++.+....++..+|.++...|++++|+.++++++.....   ......++..+|.++...|++++
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~la~~~~~~g~~~~   94 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGGLLKLGLSQYGEGKNTE   94 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHcCCHHH
Confidence            45555555432    344444578899999999999999999999998876432   22235678999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy10736         81 AIDYHLRHLIIAQ   93 (104)
Q Consensus        81 A~~~~~~a~~~~~   93 (104)
                      |+..+++++...+
T Consensus        95 A~~~~~~~~~~~p  107 (129)
T 2xev_A           95 AQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999997653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.02  E-value=1.1e-09  Score=71.94  Aligned_cols=82  Identities=24%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....++.++|.++...|++++|+.+|++++++-      +....++.++|.++..+|++++|++
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~nLg~~l~~~g~~~~A~~   98 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------PTFADAYSNMGNTLKEMQDVQGALQ   98 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            44555544432 2223445667777777777777777777777777652      1224567788888888888888888


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      .|++++++.
T Consensus        99 ~~~kAl~l~  107 (723)
T 4gyw_A           99 CYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            888887764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.3e-08  Score=53.65  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=66.8

Q ss_pred             chhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh
Q psy10736          4 QPNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      -+.+|+..++..    ++.+....++.++|.++...|++++|+.++++++....  .    ...++.++|.++...|+++
T Consensus        43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~~a~~~~~~~~~~  116 (148)
T 2dba_A           43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--G----DVKALYRRSQALEKLGRLD  116 (148)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--C----CHHHHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--c----CHHHHHHHHHHHHHcCCHH
Confidence            355666655543    34444578899999999999999999999999987621  1    1467889999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy10736         80 TAIDYHLRHLIIAQ   93 (104)
Q Consensus        80 ~A~~~~~~a~~~~~   93 (104)
                      +|+.++++++++..
T Consensus       117 ~A~~~~~~al~~~p  130 (148)
T 2dba_A          117 QAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999997743

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.01  E-value=5.9e-10  Score=58.04  Aligned_cols=84  Identities=12%  Similarity=-0.012  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..+++. ...+....++..+|.++...|++++|+..+++++.+..      ....++.++|.++...|++++|+.
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~la~~~~~~g~~~~A~~  106 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIAVHAALAVSHTNEHNANAALA  106 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            34555444332 12233466788999999999999999999999887622      123578899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      .+++++++...
T Consensus       107 ~~~~al~~~P~  117 (121)
T 1hxi_A          107 SLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHhCcC
Confidence            99999876543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.00  E-value=2.8e-09  Score=64.26  Aligned_cols=69  Identities=20%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +....++.++|.++...|++++|+.++++++.+..      ....+++++|.++...|++++|+.+|++++++..
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            34478999999999999999999999999998732      2246889999999999999999999999998743

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.99  E-value=4.2e-09  Score=57.85  Aligned_cols=65  Identities=18%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+|.++|.++...|++++|+.+|++++++-.      .-..++..+|.++...|++++|+..+++++...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            45788999999999999999999999987621      124678889999999999999999988887543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.99  E-value=3.3e-09  Score=57.52  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +.+.....+..+|.++...|++++|+.++++++.+...      ...++.++|.++...|++++|+.+|++++++..
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   76 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP   76 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            34456778999999999999999999999999887321      246889999999999999999999999998743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.99  E-value=1e-08  Score=52.04  Aligned_cols=70  Identities=11%  Similarity=-0.005  Sum_probs=59.6

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .-+..+|..+...+++..|+.++++|+........ ......++.++|.++...|++++|+.++++++.+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            44678999999999999999999999988764432 23446788999999999999999999999999764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.98  E-value=1.5e-09  Score=58.39  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...|....++..+|.++...|++++|+.++++++++.      +....++.++|.++...|++.+|..
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN------PTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHH
Confidence            55666555433 2223446789999999999999999999999998872      1224678999999999999988766


Q ss_pred             H-HHHHHHHHHH
Q psy10736         84 Y-HLRHLIIAQQ   94 (104)
Q Consensus        84 ~-~~~a~~~~~~   94 (104)
                      . +++++++.+.
T Consensus       121 ~~~~~al~l~P~  132 (150)
T 4ga2_A          121 YWVERAAKLFPG  132 (150)
T ss_dssp             HHHHHHHHHSTT
T ss_pred             HHHHHHHHhCcC
Confidence            5 6899987543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.98  E-value=4.8e-09  Score=58.77  Aligned_cols=83  Identities=20%  Similarity=0.182  Sum_probs=67.5

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      -+++|+..++..-++  ...++.++|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.
T Consensus        21 ~~~~A~~~~~~a~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~lg~~~~~~~~~~~A~~   92 (213)
T 1hh8_A           21 DWKGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------HLAVAYFQRGMLYYQTEKYDLAIK   92 (213)
T ss_dssp             CHHHHHHHHHTSSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHcccHHHHHH
Confidence            356777777665433  356899999999999999999999999987631      224678999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      ++++++++.+.
T Consensus        93 ~~~~al~~~~~  103 (213)
T 1hh8_A           93 DLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHTTTT
T ss_pred             HHHHHHHhCCC
Confidence            99999986543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.96  E-value=1.3e-08  Score=58.72  Aligned_cols=82  Identities=13%  Similarity=0.036  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHhC-----CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh
Q psy10736          5 PNDRLKIAREFG-----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP   79 (104)
Q Consensus         5 ~~~a~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   79 (104)
                      +++|+..+++.-     +++....++..+|.++...|++++|+.++++++....      ....++..+|.++...|+++
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHccCHH
Confidence            456666555443     2567788889999999999999999999988877521      11345677777777777777


Q ss_pred             HHHHHHHHHHHHH
Q psy10736         80 TAIDYHLRHLIIA   92 (104)
Q Consensus        80 ~A~~~~~~a~~~~   92 (104)
                      +|+.++++++++.
T Consensus        95 ~A~~~~~~al~~~  107 (275)
T 1xnf_A           95 AAYEAFDSVLELD  107 (275)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            7777777777653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.2e-08  Score=58.17  Aligned_cols=70  Identities=21%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++..+|.++...|++++|+.++.+++.+..... +......++..+|.++...|++++|+.++++++.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  108 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE  108 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            56789999999999999999999999999887764 44445789999999999999999999999999984

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.94  E-value=4.7e-09  Score=65.70  Aligned_cols=69  Identities=22%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +....++.++|.++...|++++|+.++++++.+..      ....+++++|.+|...|++++|+.+|++++++..
T Consensus       314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            34478999999999999999999999999998732      1257899999999999999999999999987644

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.93  E-value=1.6e-08  Score=53.71  Aligned_cols=72  Identities=17%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+.....+..+|..+...|++++|+..+++++....      ....++.++|.++...|++++|+.+|++++.+.+
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34456677889999999999999999999999886521      1246788999999999999999999999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.93  E-value=4.4e-09  Score=65.17  Aligned_cols=90  Identities=7%  Similarity=-0.086  Sum_probs=69.0

Q ss_pred             chhHHHHHHHHhCC---HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHh--C
Q psy10736          4 QPNDRLKIAREFGD---KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA--VEAQACYSLGNTYTLL--R   76 (104)
Q Consensus         4 ~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~l~~~~~~~--g   76 (104)
                      ++++|+++.+....   .+....++.++|.+|..+|++++|+.++++++.+.+....+.  ..+.++.++|.++...  +
T Consensus        73 ~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  152 (472)
T 4g1t_A           73 CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN  152 (472)
T ss_dssp             HHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccc
Confidence            45666666655432   345577899999999999999999999999999988765432  2356777888777655  4


Q ss_pred             ChhHHHHHHHHHHHHHH
Q psy10736         77 DYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        77 ~~~~A~~~~~~a~~~~~   93 (104)
                      ++++|+.+|++++++-+
T Consensus       153 ~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKP  169 (472)
T ss_dssp             HHHHHHHHHHHHHHHST
T ss_pred             cHHHHHHHHHHHHHhCC
Confidence            69999999999998743

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.93  E-value=1.8e-09  Score=60.49  Aligned_cols=89  Identities=11%  Similarity=0.015  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG----------DRAVEAQACYSLGNTYT   73 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~   73 (104)
                      +.+|+..++..- ..+....++.++|.++...|++++|+.++++++.......          ..+....++.++|.++.
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  132 (213)
T 1hh8_A           53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA  132 (213)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence            445555443321 1123457889999999999999999999999998755433          22334578999999999


Q ss_pred             HhCChhHHHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..|++++|+.++++++++..
T Consensus       133 ~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A          133 KKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HTTCHHHHHHHHHHHHTTCC
T ss_pred             HccCHHHHHHHHHHHHHcCc
Confidence            99999999999999997754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.93  E-value=6.4e-09  Score=59.00  Aligned_cols=84  Identities=11%  Similarity=0.044  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHhCCH-H-HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREFGDK-A-AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +.+|+..+++.-.. + ....++.++|.++...|++++|+.++++++...      +....++..+|.++...|++++|+
T Consensus        23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~   96 (228)
T 4i17_A           23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------YNLANAYIGKSAAYRDMKNNQEYI   96 (228)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHcccHHHHH
Confidence            45566555432110 0 223567779999999999999999999988542      224578899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQQ   94 (104)
Q Consensus        83 ~~~~~a~~~~~~   94 (104)
                      ..+++++++.+.
T Consensus        97 ~~~~~al~~~p~  108 (228)
T 4i17_A           97 ATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHSTT
T ss_pred             HHHHHHHHHCCC
Confidence            999999987544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.92  E-value=3.6e-09  Score=69.63  Aligned_cols=67  Identities=24%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ....++.++|.++...|++++|+++|++++++-      +....++.++|.++...|++++|+.+|++++++.
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  141 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK  141 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            345677888888888888888888888877652      1224567777777777777777777777777653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.90  E-value=6.5e-09  Score=63.80  Aligned_cols=97  Identities=7%  Similarity=0.003  Sum_probs=80.2

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++.+++.+....++......+...++.++...|+++.|+.++++++......++....+.++.++|.++...|++.+|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           77 FIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             HHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence            34455555555666666777788888888889999999999999999999888877788899999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhh
Q psy10736         84 YHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        84 ~~~~a~~~~~~~~~~~~  100 (104)
                      .+++++......++...
T Consensus       157 ~l~~~~~~~~~~~~~~~  173 (434)
T 4b4t_Q          157 LINDLLREFKKLDDKPS  173 (434)
T ss_dssp             HHHHHHHHHTTSSCSTH
T ss_pred             HHHHHHHHHHhcccchh
Confidence            99999988877665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.5e-07  Score=53.70  Aligned_cols=88  Identities=22%  Similarity=0.278  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH--------------------HhCChHHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ--------------------DLGDRAVEAQ   63 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------------~~~~~~~~~~   63 (104)
                      +.+++.+....+ +.+....++..+|.++...|++++|+.++++++.+..                    .....+....
T Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  140 (258)
T 3uq3_A           61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAE  140 (258)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHH
Confidence            344444443332 4445578889999999999999999999999887311                    0112233456


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ++..+|.++...|++++|+.++++++++.
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  169 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA  169 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            77888888888888888888888887654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.89  E-value=2.7e-08  Score=55.43  Aligned_cols=66  Identities=18%  Similarity=0.179  Sum_probs=57.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++.++|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.+|++++++..
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            47899999999999999999999999998721      2246889999999999999999999999997743

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.88  E-value=3.1e-08  Score=51.00  Aligned_cols=69  Identities=14%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ....+..+|..+...|++++|+.++.+++....      ....++.++|.++...|++++|+.++++++.+....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            456789999999999999999999999987631      124678899999999999999999999999987754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.87  E-value=2.3e-08  Score=51.73  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....++..+|.++...|++++|+.++++++....      ....++.++|.++...|++++|+.
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~  105 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP------TFIKGYTRKAAALEAMKDYTKAMD  105 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHHhhHHHHHH
Confidence            45666655543 22233467889999999999999999999999987621      124678899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      ++++++++...
T Consensus       106 ~~~~~~~~~p~  116 (133)
T 2lni_A          106 VYQKALDLDSS  116 (133)
T ss_dssp             HHHHHHHHCGG
T ss_pred             HHHHHHHhCCC
Confidence            99999977543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.87  E-value=6.1e-09  Score=59.06  Aligned_cols=88  Identities=6%  Similarity=-0.109  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +++|+..++.. ...+....++..+|.++...|++++|+.++++++.+...... ....+.++.++|.++...|++++|+
T Consensus        58 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A           58 YKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence            45566554432 334456778999999999999999999999999876432211 1224567999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      .+|++++++.
T Consensus       138 ~~~~~al~~~  147 (228)
T 4i17_A          138 ENYKHATDVT  147 (228)
T ss_dssp             HHHHHHTTSS
T ss_pred             HHHHHHHhcC
Confidence            9999998763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.86  E-value=3.3e-08  Score=51.67  Aligned_cols=67  Identities=16%  Similarity=0.140  Sum_probs=58.0

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....+..+|..+...|++++|+.++.+++....      ....++.++|.++...|++++|+..+++++.+.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p   74 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDG   74 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            356789999999999999999999999988632      1246889999999999999999999999998753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.85  E-value=3.6e-08  Score=59.45  Aligned_cols=76  Identities=17%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      .+....++.++|.++...|++++|+.+|++++.+.....+         ......++.++|.++...|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566788999999999999999999999999988654321         1223678999999999999999999999999


Q ss_pred             HHHHH
Q psy10736         89 LIIAQ   93 (104)
Q Consensus        89 ~~~~~   93 (104)
                      +++..
T Consensus       223 l~~~p  227 (336)
T 1p5q_A          223 LELDS  227 (336)
T ss_dssp             HHHCT
T ss_pred             HHhCC
Confidence            98743

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.85  E-value=2.9e-08  Score=49.31  Aligned_cols=64  Identities=19%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ-ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...|..+...|++++|+..+++++....   +   ... ++.++|.++...|++++|+.+|++++++....
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p---~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEP---V---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCS---S---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC---C---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            5678899999999999999999887521   1   134 78999999999999999999999999875443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=1.7e-08  Score=54.19  Aligned_cols=66  Identities=12%  Similarity=0.031  Sum_probs=52.6

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++.++|.++...|++++|+.++.+++....      ....++.++|.++...|++++|+.++++++++..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDK------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP  112 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            56778888888889999999999988887621      1235778889999999999999999988887643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.84  E-value=3.4e-08  Score=51.27  Aligned_cols=65  Identities=17%  Similarity=0.027  Sum_probs=55.2

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+..+|..+...|++++|+..+++++....      ....++..+|.++...|++++|+..|++++++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            357789999999999999999999987621      22467899999999999999999999999987543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.84  E-value=2e-08  Score=51.62  Aligned_cols=66  Identities=18%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..++..+|.++...|++++|+.++.+++....      ....++..+|.++...|++++|+.++++++++..
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence            56788899999999999999999999887521      1145788999999999999999999999987743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.83  E-value=2.9e-08  Score=55.34  Aligned_cols=75  Identities=25%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR----------AVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      ....+..+..+|..+...|++++|+.++.+++.+.....+.          .....++.++|.++...|++++|+.++++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34567789999999999999999999999999865443211          11247889999999999999999999999


Q ss_pred             HHHHH
Q psy10736         88 HLIIA   92 (104)
Q Consensus        88 a~~~~   92 (104)
                      ++.+.
T Consensus       114 al~~~  118 (198)
T 2fbn_A          114 VLKID  118 (198)
T ss_dssp             HHHHS
T ss_pred             HHHhC
Confidence            99874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=1.3e-08  Score=51.54  Aligned_cols=83  Identities=18%  Similarity=0.043  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..++..- ..+....++..+|.++...|++++|+.++++++....      ....++.++|.++...|++++|..
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------DWGKGYSRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHhhHHHHHH
Confidence            445555444321 1122356788999999999999999999999887622      124678899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      ++++++++..
T Consensus        94 ~~~~~~~~~~  103 (118)
T 1elw_A           94 TYEEGLKHEA  103 (118)
T ss_dssp             HHHHHHTTCT
T ss_pred             HHHHHHHcCC
Confidence            9999987643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.81  E-value=3.3e-08  Score=57.19  Aligned_cols=88  Identities=17%  Similarity=0.067  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-----
Q psy10736          4 QPNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL-----   74 (104)
Q Consensus         4 ~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----   74 (104)
                      -+.+|+..++..    ++.+....++..+|.++...|++++|+..+++++.......   ....++..+|.++..     
T Consensus        30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~~~~~  106 (261)
T 3qky_A           30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---RVPQAEYERAMCYYKLSPPY  106 (261)
T ss_dssp             CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHCCCT
T ss_pred             CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHHhcccc
Confidence            356777766654    23344478899999999999999999999999887643322   234788999999999     


Q ss_pred             ---hCChhHHHHHHHHHHHHHHH
Q psy10736         75 ---LRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        75 ---~g~~~~A~~~~~~a~~~~~~   94 (104)
                         .|++++|+..|++++...+.
T Consensus       107 ~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A          107 ELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             cccchhHHHHHHHHHHHHHHCcC
Confidence               99999999999999977543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.81  E-value=1.8e-08  Score=57.11  Aligned_cols=26  Identities=23%  Similarity=0.174  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      +.++|.++...|++++|+..|+++++
T Consensus       121 ~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A          121 HLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            34444444444444444444444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.81  E-value=7.1e-08  Score=59.01  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG----------DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ...+..+..+|..+...|++++|+..|++++.+.....          .......++.++|.++...|++++|+.+++++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34566789999999999999999999999999766531          34455789999999999999999999999999


Q ss_pred             HHHH
Q psy10736         89 LIIA   92 (104)
Q Consensus        89 ~~~~   92 (104)
                      +++.
T Consensus       300 l~~~  303 (370)
T 1ihg_A          300 LEID  303 (370)
T ss_dssp             HTTC
T ss_pred             HHhC
Confidence            9763

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.80  E-value=1.7e-08  Score=60.76  Aligned_cols=69  Identities=22%  Similarity=0.222  Sum_probs=52.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                      ..++.++|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.++++++++.+...
T Consensus       247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  315 (365)
T 4eqf_A          247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQP------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR  315 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence            45677788888888888888888888776521      1246778888889999999999999999888876643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.78  E-value=1.4e-07  Score=48.35  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ...+.....+..+|..+...|++++|+.++++++.....      ...++..+|.++...|++++|+.++++++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   76 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID   76 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence            345677888999999999999999999999999876221      24678899999999999999999999999764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.78  E-value=1.1e-07  Score=59.63  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      .+..+..+.++|..+...|++++|+.+|.+++.+......         ......++.++|.++..+|++++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3566788999999999999999999999999987654321         2233678999999999999999999999999


Q ss_pred             HHHHH
Q psy10736         89 LIIAQ   93 (104)
Q Consensus        89 ~~~~~   93 (104)
                      +++..
T Consensus       344 l~~~p  348 (457)
T 1kt0_A          344 LGLDS  348 (457)
T ss_dssp             HHHST
T ss_pred             HhcCC
Confidence            98743

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.77  E-value=1.7e-08  Score=63.58  Aligned_cols=83  Identities=11%  Similarity=0.024  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....++.++|.++...|++++|+.++++++++.      +....++.++|.+|..+|++++|+.
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------KKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            55666555433 1122347789999999999999999999999998762      1234688999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .+++++++..
T Consensus        96 ~~~~al~~~p  105 (477)
T 1wao_1           96 DYETVVKVKP  105 (477)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHhCC
Confidence            9999998743

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.77  E-value=3.4e-08  Score=58.21  Aligned_cols=89  Identities=17%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHhCChhH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR---AVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +++|+..++.. ...+....++..+|.++...|++++|+.++++++...+..++.   +....++.++|.++...|++++
T Consensus       175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            34555544432 2223345677888888888888899988888888877655443   2224677888888888888888


Q ss_pred             HHHHHHHHHHHHH
Q psy10736         81 AIDYHLRHLIIAQ   93 (104)
Q Consensus        81 A~~~~~~a~~~~~   93 (104)
                      |+.++++++++..
T Consensus       255 A~~~~~~a~~~~~  267 (330)
T 3hym_B          255 ALDYHRQALVLIP  267 (330)
T ss_dssp             HHHHHHHHHHHST
T ss_pred             HHHHHHHHHhhCc
Confidence            8888888887643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.77  E-value=3.1e-08  Score=56.14  Aligned_cols=83  Identities=14%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh--------
Q psy10736          5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL--------   75 (104)
Q Consensus         5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--------   75 (104)
                      +++|+..+++ ....|....++.++|.++...|++++|+..+++++.+.      +....++.++|.++...        
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~~~~~~~~~   94 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART------PRYLGGYMVLSEAYVALYRQAEDRE   94 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhhhhhhhhc
Confidence            5566665554 33444557788999999999999999999999998762      22246788999999999        


Q ss_pred             ---CChhHHHHHHHHHHHHHH
Q psy10736         76 ---RDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        76 ---g~~~~A~~~~~~a~~~~~   93 (104)
                         |++++|+..+++++++.+
T Consensus        95 ~~~g~~~~A~~~~~~al~~~P  115 (217)
T 2pl2_A           95 RGKGYLEQALSVLKDAERVNP  115 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccccCHHHHHHHHHHHHHhCc
Confidence               999999999999998743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.77  E-value=7.3e-09  Score=62.53  Aligned_cols=66  Identities=20%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .++.++|.++...|++++|+.++++++.+..      ....+++++|.+|...|++++|+.+|++++++...
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEE------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            4899999999999999999999999987621      22468899999999999999999999999877544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=1.5e-07  Score=47.52  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+..+|..+...|++++|+.++++++.....      ...++..+|.++...|++++|+..+++++++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   69 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP   69 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            467889999999999999999999999876321      245788999999999999999999999997643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.75  E-value=9.3e-08  Score=48.69  Aligned_cols=65  Identities=38%  Similarity=0.558  Sum_probs=52.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..++..+|.++...|++++|+.++++++....  .    ...++..+|.++...|++++|+.++++++++.
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--N----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--c----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999998876521  1    13567888999999999999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.74  E-value=1.9e-08  Score=59.22  Aligned_cols=85  Identities=15%  Similarity=0.099  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..+++. ...+....++.++|.++...|++++|+..+++++.+.      +....++.++|.++...|++++|+.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~   93 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSVKAHFFLGQCQLEMESYDEAIA   93 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            45566555432 1112245678999999999999999999999988752      1224688999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10736         84 YHLRHLIIAQQL   95 (104)
Q Consensus        84 ~~~~a~~~~~~~   95 (104)
                      .|++++++....
T Consensus        94 ~~~~al~l~p~~  105 (281)
T 2c2l_A           94 NLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCccc
Confidence            999999987754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.74  E-value=3.2e-08  Score=59.53  Aligned_cols=86  Identities=16%  Similarity=0.034  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++.- ..+....++..+|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~  154 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP------NNLKALMALAVSYTNTSHQQDACE  154 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHccccHHHHHH
Confidence            445555554331 1123366789999999999999999999999987621      124678999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy10736         84 YHLRHLIIAQQLM   96 (104)
Q Consensus        84 ~~~~a~~~~~~~~   96 (104)
                      .+++++++.+...
T Consensus       155 ~~~~al~~~p~~~  167 (365)
T 4eqf_A          155 ALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHHHHHHCHHHH
T ss_pred             HHHHHHHhCccch
Confidence            9999998766543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.72  E-value=1.4e-07  Score=48.00  Aligned_cols=67  Identities=37%  Similarity=0.549  Sum_probs=56.6

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ....++..+|.++...|++++|+.++++++....   +   ...++..+|.++...|++++|+.++++++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---N---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            3467789999999999999999999999987521   1   23578899999999999999999999998763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.72  E-value=5.6e-08  Score=58.28  Aligned_cols=68  Identities=21%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ..++..+|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+.++++++.+.+..
T Consensus       251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45677778888888888888888888776521      123577888999999999999999999998887655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.71  E-value=2.6e-07  Score=49.45  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+..+..+|..+...|++++|+.++.+++.....      ...++.++|.++...|++++|+.++++++.+..
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            345778999999999999999999999999876321      246788999999999999999999999998743

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.71  E-value=3.2e-08  Score=49.65  Aligned_cols=82  Identities=11%  Similarity=0.072  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~   82 (104)
                      +.+|+..+++.- ..+....++.++|.++...|++++|+.++++++....   + .....++.++|.++... |++++|+
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~~A~   97 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE---D-EYNKDVWAAKADALRYIEGKEVEAE   97 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC---C-TTCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---c-cchHHHHHHHHHHHHHHhCCHHHHH
Confidence            344444443322 2233456666777777777777777777777665421   1 00234566777777777 7777777


Q ss_pred             HHHHHHHH
Q psy10736         83 DYHLRHLI   90 (104)
Q Consensus        83 ~~~~~a~~   90 (104)
                      +++++++.
T Consensus        98 ~~~~~~~~  105 (112)
T 2kck_A           98 IAEARAKL  105 (112)
T ss_dssp             HHHHHHGG
T ss_pred             HHHHHHhh
Confidence            77766654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.71  E-value=1.7e-08  Score=62.10  Aligned_cols=64  Identities=9%  Similarity=-0.100  Sum_probs=32.2

Q ss_pred             HHHHHHhHHHHHHhcc-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..+++++|.++...|+ +++|+.++++++.+..+      ...++.++|.++...|++++|+.+|++++++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4456666666666664 66666666666554111      1233444444444444444444444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.71  E-value=2.5e-07  Score=53.46  Aligned_cols=90  Identities=10%  Similarity=-0.116  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHH--------hccHHHHHHHHHHHHHHHHHhCChHHH-----------
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIF--------LGEYQAASEHYKRTLVLAQDLGDRAVE-----------   61 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~-----------   61 (104)
                      +.+|+..++..    ++.+....+++.+|.++..        .|++++|+..+++++............           
T Consensus        68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~  147 (261)
T 3qky_A           68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL  147 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence            45555544433    2334566789999999999        999999999999998765433222211           


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...+..+|.+|...|++++|+..|+++++..+.
T Consensus       148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            112388999999999999999999999976543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.70  E-value=4.3e-08  Score=60.28  Aligned_cols=83  Identities=8%  Similarity=-0.012  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....+++++|.++...|++++|+..+++++.+-      +.-..++.++|.++...|++++|+.
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~  221 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQ  221 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHH
Confidence            45555544433 2223346678899999999999999999999988762      1224678899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      +|++++++-.
T Consensus       222 ~~~~al~l~P  231 (382)
T 2h6f_A          222 YVDQLLKEDV  231 (382)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHhCC
Confidence            9999998754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.69  E-value=7.5e-08  Score=55.57  Aligned_cols=73  Identities=14%  Similarity=0.014  Sum_probs=61.9

Q ss_pred             HHHHHHhHHHHHHhcc---HHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGE---YQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..++..+|.++...++   +++|+.++++++++....++  ......++..+|.+|...|++++|+.++++++++.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT  253 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            5678888999999998   88899999999998866555  3445678999999999999999999999999987543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.68  E-value=2.4e-07  Score=50.18  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .++..+|.++...|++++|+.++++++....      ....++..+|.++...|++++|..++++++++...
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRP------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4456666666666666666666666655421      11345667777777777777777777777766543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.68  E-value=2.7e-08  Score=57.47  Aligned_cols=85  Identities=8%  Similarity=0.006  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....++..+|.++...|++++|+.++++++..   ..++.....++..+|.++...|++++|+.
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~   95 (272)
T 3u4t_A           19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGKILMKKGQDSLAIQ   95 (272)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            44555544432 111222345677777777777777777777777652   13333335567777777777777777777


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      ++++++++.
T Consensus        96 ~~~~a~~~~  104 (272)
T 3u4t_A           96 QYQAAVDRD  104 (272)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHhcC
Confidence            777777653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.68  E-value=7.3e-08  Score=57.79  Aligned_cols=91  Identities=20%  Similarity=0.162  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHH-----HHHHHHHHHHHHHhCCh
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE-----AQACYSLGNTYTLLRDY   78 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~   78 (104)
                      +++|+..++.. ...+....++..+|.++...|++++|+.++++++.+.....++...     ..++..+|.++...|++
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            44555544432 1112335678999999999999999999999999987665433222     57889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy10736         79 PTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        79 ~~A~~~~~~a~~~~~~~   95 (104)
                      ++|...++++++.+++.
T Consensus       347 ~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          347 DAYGAADARDLSTLLTM  363 (368)
T ss_dssp             GGHHHHHTTCHHHHHHH
T ss_pred             HhHHHhHHHHHHHHHHh
Confidence            99999999999887654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.67  E-value=4.2e-07  Score=53.98  Aligned_cols=71  Identities=11%  Similarity=-0.033  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ++.....++..+|.++...|++++|+.++++++...   .   ....++..+|.++...|++++|+.+|++++++.+
T Consensus       267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---P---DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            455566778899999999999999999999998762   1   1246788999999999999999999999997754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.66  E-value=3.4e-07  Score=57.24  Aligned_cols=63  Identities=8%  Similarity=0.023  Sum_probs=55.3

Q ss_pred             HHhccHHHHHHHHHHHHHHHHHh-C-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         33 IFLGEYQAASEHYKRTLVLAQDL-G-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        33 ~~~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...|++++|+..+++++++..+. | +.+..+.++.++|.+|..+|+|++|+.++++++++.++.
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~  373 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH  373 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999998764 3 456778999999999999999999999999999998865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.66  E-value=2.5e-07  Score=47.76  Aligned_cols=68  Identities=21%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+..+|..+...|++++|+..+++++....   +......++..+|.++...|++++|+.++++++.....
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            467889999999999999999999876532   22223468899999999999999999999999986543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.66  E-value=9.8e-08  Score=62.44  Aligned_cols=69  Identities=12%  Similarity=-0.039  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +....++..+|.++...|++++|+..++++++...  .    ...+++++|.++...|++++|+..|++++++..
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--W----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--c----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44556788889999999999999999999887521  1    246788999999999999999999999987654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.66  E-value=8.7e-08  Score=60.21  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHh--------ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFL--------GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL   75 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   75 (104)
                      +++|+..+++. ...+....++.++|.++...        |++++|+.++++++.+...   ......++.++|.++...
T Consensus       195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~  271 (474)
T 4abn_A          195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYE  271 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHc
Confidence            44555555432 11123356789999999999        9999999999999987221   013457899999999999


Q ss_pred             CChhHHHHHHHHHHHHHHH
Q psy10736         76 RDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        76 g~~~~A~~~~~~a~~~~~~   94 (104)
                      |++++|+..|++++++...
T Consensus       272 g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          272 ESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             TCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHhCCC
Confidence            9999999999999987543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.65  E-value=1.8e-07  Score=59.74  Aligned_cols=66  Identities=14%  Similarity=-0.002  Sum_probs=41.2

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ...++.++|.++...|++++|+.+++++++...      ....++.++|.++...|++++|+.++++++++.
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  121 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL  121 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            345566666666666666666666666665421      113456667777777777777777777766553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=5e-07  Score=47.47  Aligned_cols=70  Identities=19%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .....+..+|..+...|++++|+.++++++...   .+......++.++|.++...|++++|+.++++++.+.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            346678899999999999999999999987652   2333346889999999999999999999999999764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.65  E-value=7.3e-07  Score=50.16  Aligned_cols=65  Identities=22%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHH----------------HHHHHHHhCChhHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS----------------LGNTYTLLRDYPTAIDYHL   86 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~   86 (104)
                      ..+...|..+...|++++|+.++++++.....      ...++..                +|.++...|++++|+..|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45677889999999999999999999887332      2334555                9999999999999999999


Q ss_pred             HHHHHHH
Q psy10736         87 RHLIIAQ   93 (104)
Q Consensus        87 ~a~~~~~   93 (104)
                      +++++.+
T Consensus        79 ~al~~~p   85 (208)
T 3urz_A           79 ELLQKAP   85 (208)
T ss_dssp             HHHHHCT
T ss_pred             HHHHHCC
Confidence            9998754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.65  E-value=8.8e-08  Score=49.48  Aligned_cols=69  Identities=19%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+.....+..+|..+...|++++|+.++++++....      ....++.++|.++...|++++|+.++++++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            345577889999999999999999999999886521      124678999999999999999999999999764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.64  E-value=2.9e-07  Score=51.45  Aligned_cols=83  Identities=19%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHh-C--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          5 PNDRLKIAREF-G--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         5 ~~~a~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      +++|+..++.. .  ..+....++..+|.++...|++++|+.++++++.....      ...++..+|.++...|++++|
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHH
Confidence            44455444332 1  23334556677777777777777777777777654211      134567777777778888888


Q ss_pred             HHHHHHHHHHHH
Q psy10736         82 IDYHLRHLIIAQ   93 (104)
Q Consensus        82 ~~~~~~a~~~~~   93 (104)
                      +..++++++...
T Consensus       167 ~~~~~~~~~~~~  178 (225)
T 2vq2_A          167 DYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC
Confidence            888877776543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.63  E-value=8.2e-08  Score=48.09  Aligned_cols=66  Identities=15%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .++..+|.++...|++++|+.++++++....   +   ...++.++|.++...|++++|+.++++++++...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---E---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            4567889999999999999999999987621   1   1357889999999999999999999999998543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.62  E-value=2.1e-08  Score=59.16  Aligned_cols=67  Identities=24%  Similarity=0.324  Sum_probs=57.4

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ....++..+|.++...|++++|+.++++++.....      ...++.++|.++...|++++|+.++++++++.
T Consensus       234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc------chHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            34568899999999999999999999999876322      24678899999999999999999999998654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.61  E-value=1.9e-07  Score=59.34  Aligned_cols=67  Identities=22%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..++..+|.++...|++++|+..++++++..  ..    ...++..+|.+|...|++++|+.++++++++.+.
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS--TN----DANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            7789999999999999999999999988763  11    2367899999999999999999999999987543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.61  E-value=3.3e-07  Score=52.33  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ....++..+|.++...|++++|+.++++++....  .    ...++..+|.++...|++++|+.++++++
T Consensus       139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--N----QPSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555555555544311  0    12334455555555555555555555544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.60  E-value=3.2e-07  Score=52.88  Aligned_cols=83  Identities=16%  Similarity=-0.041  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..+++.- ..+....++..+|.++...|++++|+.++++++.....      ...++..+|.++...|++++|+.
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHHhccHHHHHH
Confidence            445555444321 11123567899999999999999999999999886321      23678899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      ++++++++.+
T Consensus       133 ~~~~a~~~~~  142 (275)
T 1xnf_A          133 DLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHhCC
Confidence            9999997644

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.60  E-value=3.9e-07  Score=49.32  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=37.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .++..+|.++...|++++|+.++++++.....      ...++..+|.++...|++++|+.+++++++.
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            44555666666666666666666665544111      1245566677777777777777777766654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.58  E-value=1e-07  Score=56.10  Aligned_cols=67  Identities=18%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..++..+|.++...|++++|+.++++++....      ....++..+|.++...|++++|+.++++++.+.+.
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDINP------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            34566666666666777777766666655421      11235566666666666666666666666666655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.58  E-value=6.6e-07  Score=50.84  Aligned_cols=71  Identities=13%  Similarity=-0.016  Sum_probs=57.7

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...++.+|..+...|++++|+..+++++.....   ......++..+|.++...|++++|+..|+++++..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            346788999999999999999999998765322   22234688999999999999999999999999776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.58  E-value=3e-09  Score=53.71  Aligned_cols=82  Identities=15%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..+++. ...+....++.++|.++...|++++|+.++++++.+....++......++..+|.++...|+++.|+.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence            45566554432 11122356789999999999999999999999998766555555567889999999999998887766


Q ss_pred             HHH
Q psy10736         84 YHL   86 (104)
Q Consensus        84 ~~~   86 (104)
                      .++
T Consensus       100 ~~~  102 (111)
T 2l6j_A          100 EVD  102 (111)
T ss_dssp             SSS
T ss_pred             HHH
Confidence            543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.58  E-value=2.7e-07  Score=53.54  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             HHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLI   90 (104)
Q Consensus        23 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~   90 (104)
                      .++.++|.++..    .+++++|+.+++++++.    +    ...++.++|.++..    .+++++|+.+|+++++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  106 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD  106 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence            345556666666    66666666666665543    1    12344555555555    5555555555555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.57  E-value=8.4e-07  Score=54.57  Aligned_cols=70  Identities=11%  Similarity=-0.033  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ++.....++..+|.++...|++++|+.++++++...      +....++..+|.++...|++++|+..+++++++.
T Consensus       290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  359 (450)
T 2y4t_A          290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN  359 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            445557789999999999999999999999988762      1123678899999999999999999999998753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.57  E-value=4.6e-07  Score=51.76  Aligned_cols=62  Identities=19%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .++..+|.++...|++++|+.++++++....      ....++..+|.++...|++++|+.++++++.
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDS------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3444555555555555555555555444311      0123445555555555555555555555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.56  E-value=2.1e-07  Score=50.77  Aligned_cols=63  Identities=14%  Similarity=0.135  Sum_probs=33.2

Q ss_pred             HHHHhHHH-HHHhccH--HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNS-HIFLGEY--QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        24 ~~~~l~~~-~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ++..+|.+ +...|++  ++|+.++++++....      ....++.++|.++...|++++|+.++++++++.
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALALDS------NEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            34444444 4444544  555555555444311      112345566666666666666666666666543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.56  E-value=5.2e-07  Score=47.88  Aligned_cols=63  Identities=16%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             HHHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~   91 (104)
                      ...+++++|.+|..    .+++++|+.+++++.+.    ++    ..++.++|.+|..    .+++++|+.+|+++.+.
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            35678999999988    78999999999998753    43    3578999999999    89999999999999865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.55  E-value=2.5e-06  Score=50.59  Aligned_cols=85  Identities=13%  Similarity=0.026  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHhC---CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          5 PNDRLKIAREFG---DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         5 ~~~a~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      +.+++..++...   ++.....++.++|.++...|++++|++++++++..   ..+|.....+.+++|.++..+|+.++|
T Consensus       151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g---~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS---PAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---TTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC---CCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            445555554332   33334568899999999999999999999987621   111322456888999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         82 IDYHLRHLIIA   92 (104)
Q Consensus        82 ~~~~~~a~~~~   92 (104)
                      ...|++++...
T Consensus       228 ~~~l~~a~a~~  238 (282)
T 4f3v_A          228 VALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhcC
Confidence            99999988653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.55  E-value=1.7e-07  Score=59.88  Aligned_cols=83  Identities=17%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....++..+|.++...|++++|+++++++++...      ....++.++|.++...|++++|+.
T Consensus         5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP------GHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34555544433 23344567899999999999999999999999987622      224678999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      ++++++++..
T Consensus        79 ~~~~al~~~p   88 (568)
T 2vsy_A           79 LLQQASDAAP   88 (568)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHhcCC
Confidence            9999998743

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.55  E-value=5.2e-07  Score=50.40  Aligned_cols=80  Identities=11%  Similarity=0.023  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~   82 (104)
                      +++|+..++..- ..+....++..+|.++...|++++|+.++++++....      ....++..+|.++... |++++|+
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~~A~   97 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------DSAEINNNYGWFLCGRLNRPAESM   97 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCcHHHHH
Confidence            345555444321 1123355677778888888888888888887766521      1134667778888888 8888888


Q ss_pred             HHHHHHHH
Q psy10736         83 DYHLRHLI   90 (104)
Q Consensus        83 ~~~~~a~~   90 (104)
                      .+++++++
T Consensus        98 ~~~~~~~~  105 (225)
T 2vq2_A           98 AYFDKALA  105 (225)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88888776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.54  E-value=1e-07  Score=59.90  Aligned_cols=69  Identities=19%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccH-HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEY-QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+....++..+|.++...|++ ++|+.++++++.+..      ....++.++|.+|...|++++|+.+|++++++.
T Consensus        98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  167 (474)
T 4abn_A           98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC  167 (474)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            344678899999999999999 999999999987621      224688999999999999999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.53  E-value=1.1e-06  Score=44.98  Aligned_cols=83  Identities=30%  Similarity=0.410  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..++..- ..+....++..+|.++...|++++|+.++++++....   +   ...++..+|.++...|++++|+.
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~A~~   90 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---R---SAEAWYNLGNAYYKQGDYDEAIE   90 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T---CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---C---chHHHHHHHHHHHHhcCHHHHHH
Confidence            445555554432 2344567788889999999999999999999876521   1   13567889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .+++++....
T Consensus        91 ~~~~~~~~~~  100 (136)
T 2fo7_A           91 YYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHhCC
Confidence            9999987643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.53  E-value=3.5e-07  Score=53.83  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..++..- ..+....++..+|.++...|++++|+.++++++....      ....++..+|.++...|++++|+.
T Consensus       154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP------DDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence            345555444321 1122356789999999999999999999999987621      123678899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .+++++++.+
T Consensus       228 ~~~~a~~~~~  237 (327)
T 3cv0_A          228 AYNRALDINP  237 (327)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHcCC
Confidence            9999987643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=2.9e-07  Score=54.19  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=55.5

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +..+..+|..+...|++++|+.++.+++....      ....++.++|.++...|++++|+..+++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999987621      12467899999999999999999999999865

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.52  E-value=6.7e-07  Score=50.61  Aligned_cols=62  Identities=21%  Similarity=0.316  Sum_probs=27.4

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .++..+|.++...|++++|+.++++++.....  +    ..++..+|.++...|++++|+.+++++++
T Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  153 (243)
T 2q7f_A           92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--N----GDLFYMLGTVLVKLEQPKLALPYLQRAVE  153 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--S----HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444455555555555555555544433110  0    12334444444444444444444444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.52  E-value=4.3e-07  Score=51.41  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ++..+|.++...|++++|+.++++++++
T Consensus       195 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          195 AFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            4455555555555555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.52  E-value=1e-06  Score=45.15  Aligned_cols=65  Identities=38%  Similarity=0.550  Sum_probs=54.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..++..+|.++...|++++|+.++++++.....      ...++..+|.++...|++++|..++++++.+.
T Consensus        69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            456788999999999999999999998875321      13567889999999999999999999998653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=3.5e-07  Score=55.45  Aligned_cols=65  Identities=28%  Similarity=0.244  Sum_probs=40.9

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ...++..+|.++...|++++|+.++++++.+..      ....++.++|.++...|++++|+..|++++++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP------DFIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677777888888888888888887766411      11234556666666666666666666655543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.51  E-value=6.7e-07  Score=50.82  Aligned_cols=87  Identities=9%  Similarity=-0.076  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH------
Q psy10736          5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL------   74 (104)
Q Consensus         5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~------   74 (104)
                      +++|+..++..    ++.+....++..+|.++...|++++|+..+++++.......   ....++..+|.++..      
T Consensus        20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---cHHHHHHHHHHHHHhhhhhhh
Confidence            55666655543    23344567899999999999999999999999887644322   233567788888765      


Q ss_pred             ------------hCChhHHHHHHHHHHHHHHH
Q psy10736         75 ------------LRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        75 ------------~g~~~~A~~~~~~a~~~~~~   94 (104)
                                  .|++++|+..|+++++..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence                        57899999999998876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.50  E-value=3.2e-07  Score=57.55  Aligned_cols=87  Identities=11%  Similarity=0.015  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHh----------ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFL----------GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL   74 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   74 (104)
                      +++++...............+..+|.++...          |++++|+.++++++....      ....++..+|.++..
T Consensus       401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~  474 (537)
T 3fp2_A          401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP------RSEQAKIGLAQLKLQ  474 (537)
T ss_dssp             HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Confidence            3344444333333333334466778888888          999999999999987622      123678999999999


Q ss_pred             hCChhHHHHHHHHHHHHHHHhcc
Q psy10736         75 LRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        75 ~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      .|++++|+.+|++++++.+..++
T Consensus       475 ~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          475 MEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC--CHH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHH
Confidence            99999999999999988765443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.49  E-value=1.3e-06  Score=47.56  Aligned_cols=66  Identities=15%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-HHHhCCh--hHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT-YTLLRDY--PTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~a~~~~~   93 (104)
                      ..++..+|.++...|++++|+.++++++.+...  +    ..++..+|.+ +...|++  ++|+..+++++++..
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--N----AELYAALATVLYYQASQHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--C----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999876421  2    3577899999 8899998  999999999997643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.49  E-value=4.3e-07  Score=56.54  Aligned_cols=82  Identities=13%  Similarity=0.033  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +.+|+..++..-.......++..+|.++...|++++|+..+++++...      +....++..+|.++...|++++|+..
T Consensus        22 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           22 YDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------PDYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            455555554331100125678999999999999999999999988752      11236788999999999999999999


Q ss_pred             HHHHHHHH
Q psy10736         85 HLRHLIIA   92 (104)
Q Consensus        85 ~~~a~~~~   92 (104)
                      |++++.+.
T Consensus        96 ~~~~~~~~  103 (514)
T 2gw1_A           96 LSVLSLNG  103 (514)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhcC
Confidence            99987654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.47  E-value=1.9e-06  Score=54.85  Aligned_cols=70  Identities=24%  Similarity=0.323  Sum_probs=52.6

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .++..++.++...|++++|+++++++++.....+. +.....++..+|.++...|++++|+..+++++++.
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45777888888888888888888888877666443 33235677888888888888888888888887653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.47  E-value=7.3e-07  Score=52.77  Aligned_cols=65  Identities=14%  Similarity=0.035  Sum_probs=40.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH-HHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT-AIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~   92 (104)
                      ..+++++|.++...|++++|+..+++++...      +.-..++.++|.++...|++.+ +..++++++++.
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKD------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4456667777777777777777777766542      1112456677777777777655 456666666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.45  E-value=9.5e-07  Score=51.25  Aligned_cols=63  Identities=14%  Similarity=0.304  Sum_probs=55.0

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~   91 (104)
                      ...++..+|..+...|++++|+.+++++++    .++    ..++.++|.++..    .+++++|+.+|++++++
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   71 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence            356789999999999999999999999887    333    2578999999999    99999999999999865

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.45  E-value=1.5e-06  Score=43.24  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             HHHHHhHHHHHHhcc---HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGE---YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..+..+|.++...++   .++|...+++++.+      .+.-..++..+|..++..|++++|+.+|++.++...
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            456677777776655   79999999999886      233457889999999999999999999999886543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.44  E-value=2.3e-07  Score=57.79  Aligned_cols=67  Identities=13%  Similarity=0.049  Sum_probs=57.1

Q ss_pred             HHHHHhHHHHHH---hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         23 RANSNLGNSHIF---LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        23 ~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .++..+|.++..   .|++++|+.++++++....      ....++..+|.++...|++++|..++++++++.+..
T Consensus       413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDP------RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence            378999999999   9999999999999987621      123678899999999999999999999999876543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.43  E-value=1.9e-06  Score=53.81  Aligned_cols=69  Identities=6%  Similarity=-0.109  Sum_probs=57.6

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHh-C-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDL-G-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ....-+...|++++|+..+++++++..+. + +.+..+.++.++|.+|..+|+|++|+.++++++++.++.
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence            33445667889999999999999876543 3 356678999999999999999999999999999998865

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=7.6e-07  Score=53.99  Aligned_cols=64  Identities=20%  Similarity=0.131  Sum_probs=39.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.++|.++...|++++|+..+++++....      ....++.++|.++...|++++|+..+++++++
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  300 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP------HFPDAYCNLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34556666667777777777777666655311      11234566666666677777777766666654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.42  E-value=2.2e-07  Score=60.79  Aligned_cols=79  Identities=11%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++. ...+....+++++|.++...|++++|+..|++++.+....      ..++.++|.++...|++++ +.
T Consensus       449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~  521 (681)
T 2pzi_A          449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HK  521 (681)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TC
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HH
Confidence            44555544332 1223345678999999999999999999999988763211      2334445555555555555 55


Q ss_pred             HHHHHHH
Q psy10736         84 YHLRHLI   90 (104)
Q Consensus        84 ~~~~a~~   90 (104)
                      +|+++++
T Consensus       522 ~~~~al~  528 (681)
T 2pzi_A          522 FYQTVWS  528 (681)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.42  E-value=1.5e-06  Score=47.52  Aligned_cols=66  Identities=12%  Similarity=-0.002  Sum_probs=53.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.++|.++...|++++|+..+++++.......    ...++.++|.++...|+.++|+..|++++..
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ----DGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT----TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC----hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            56788899999999999999999998876532211    1346788999999999999999999988753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.41  E-value=2.4e-06  Score=50.70  Aligned_cols=84  Identities=15%  Similarity=0.044  Sum_probs=64.8

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -+++|+..++.. ...+....++..+|.++...|++++|+.++++++...      +....++..+|.++...|++++|+
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~   91 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK------MDFTAARLQRGHLLLKQGKLDEAE   91 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHHcCChHHHH
Confidence            356666666544 3456668889999999999999999999999988762      112367889999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQ   93 (104)
Q Consensus        83 ~~~~~a~~~~~   93 (104)
                      ..+++++++.+
T Consensus        92 ~~~~~~~~~~~  102 (359)
T 3ieg_A           92 DDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHhcCC
Confidence            99999887644

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.41  E-value=1.1e-06  Score=49.61  Aligned_cols=82  Identities=13%  Similarity=0.059  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hC
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LR   76 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g   76 (104)
                      +.+|+.++++.- ......++.++|.+|..    .+++++|+.+++++.+.    ++......++.++|.+|..    .+
T Consensus        69 ~~~A~~~~~~A~-~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~  143 (212)
T 3rjv_A           69 YPQARQLAEKAV-EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPE  143 (212)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCC
Confidence            445555444331 11234456666666665    56677777777666542    2211235677788888877    77


Q ss_pred             ChhHHHHHHHHHHHH
Q psy10736         77 DYPTAIDYHLRHLII   91 (104)
Q Consensus        77 ~~~~A~~~~~~a~~~   91 (104)
                      ++++|+.+|+++.++
T Consensus       144 d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          144 DDVKASEYFKGSSSL  158 (212)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            788888888887754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.41  E-value=2e-06  Score=52.91  Aligned_cols=64  Identities=16%  Similarity=0.029  Sum_probs=43.2

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++..+|.++...|++++|+..+++++....      ....++..+|.++...|++++|+..|++++++
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  123 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKM------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  123 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            55666777777777777777777777665421      12356677777777777777777777777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.38  E-value=4.4e-07  Score=46.49  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         34 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        34 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..|++++|+.++++++...   .+.+....++.++|.++...|++++|+.++++++++.+.
T Consensus         2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   59 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN   59 (117)
T ss_dssp             -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4688999999999998751   112345688999999999999999999999999987443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.37  E-value=1.6e-06  Score=52.31  Aligned_cols=75  Identities=17%  Similarity=0.096  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----------RAVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      ...+..+..+|..+...|++++|+.+|.+++.+......           ......++.++|.++...|++++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445677899999999999999999999999986432110           000113789999999999999999999999


Q ss_pred             HHHHHH
Q psy10736         88 HLIIAQ   93 (104)
Q Consensus        88 a~~~~~   93 (104)
                      ++++..
T Consensus       256 al~~~p  261 (338)
T 2if4_A          256 VLTEEE  261 (338)
T ss_dssp             HHHHCT
T ss_pred             HHHhCC
Confidence            997643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.36  E-value=8.4e-06  Score=45.99  Aligned_cols=81  Identities=16%  Similarity=0.084  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHhCCHH---HHHHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-
Q psy10736          4 QPNDRLKIAREFGDKA---AERRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-   75 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-   75 (104)
                      -+.+|+.++++.-...   ....+++++|.+|..    .+++++|+.+++++.+.   .+++    .++.++|.+|..- 
T Consensus       104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~  176 (212)
T 3rjv_A          104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGE  176 (212)
T ss_dssp             CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCB
T ss_pred             CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCC
Confidence            4667787777654322   357889999999999    78999999999998754   2332    3689999999764 


Q ss_pred             C-----ChhHHHHHHHHHHHH
Q psy10736         76 R-----DYPTAIDYHLRHLII   91 (104)
Q Consensus        76 g-----~~~~A~~~~~~a~~~   91 (104)
                      |     ++++|+.+|+++.+.
T Consensus       177 gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          177 KGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHc
Confidence            3     899999999999876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.35  E-value=1.7e-06  Score=54.31  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=28.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      +..+..+|..+...|++++|+.++++++....      ....++.++|.++...|++++|+..++++++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   87 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP------NEPVFYSNISACYISTGDLEKVIEFTTKALE   87 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444455555555555555555555443310      0123444444455555555555555544444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.30  E-value=7e-05  Score=46.43  Aligned_cols=98  Identities=14%  Similarity=0.036  Sum_probs=84.2

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      .+.+++++++...-.+.....-..+|..|...|++.+|...+.+.+.-+++.++......++.....+|...+++.++..
T Consensus        81 ~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~  160 (394)
T 3txn_A           81 LCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARA  160 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHH
Confidence            35677888887777777777888999999999999999999999999998888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHh-cchhhc
Q psy10736         84 YHLRHLIIAQQL-MDRVGE  101 (104)
Q Consensus        84 ~~~~a~~~~~~~-~~~~~~  101 (104)
                      .+.++....... .+|..+
T Consensus       161 ~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          161 ALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHhhhccCCCCHHHH
Confidence            999999888765 555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.28  E-value=3.3e-06  Score=50.08  Aligned_cols=81  Identities=9%  Similarity=-0.086  Sum_probs=62.7

Q ss_pred             chhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -|++|.+.+.... ..+... ..+.+|.++...+++++|+.+++++...    .++.....+++++|.++...|++++|+
T Consensus       117 ~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl  191 (282)
T 4f3v_A          117 NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAE  191 (282)
T ss_dssp             CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHH
Confidence            3567777665542 223344 8899999999999999999999865332    244444578999999999999999999


Q ss_pred             HHHHHHH
Q psy10736         83 DYHLRHL   89 (104)
Q Consensus        83 ~~~~~a~   89 (104)
                      .+|++++
T Consensus       192 ~~l~~a~  198 (282)
T 4f3v_A          192 RRLTEAN  198 (282)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.28  E-value=1.5e-07  Score=59.32  Aligned_cols=67  Identities=15%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+..+..+|..+...|++++|++++++++++..      ....++.++|.++..+|++++|+.++++++++.
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   70 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD   70 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3455677888899999999999999999998721      225788999999999999999999999999763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.21  E-value=4.1e-05  Score=41.42  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=54.3

Q ss_pred             HHHHHHHhHHHHHHhc---cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLG---EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ...+..++|.++...+   +..+++..++..+..    .+|...-.+++++|..+...|+|.+|..++++++++-
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            3566778888888877   677999988886653    2243456789999999999999999999999998763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.20  E-value=7.7e-06  Score=51.37  Aligned_cols=63  Identities=25%  Similarity=0.245  Sum_probs=48.2

Q ss_pred             HHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+++++|.+|..    .+++++|+.+++++.+.    ++    ..++.++|.+|..    .+++++|..+|+++++..
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GL----SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            4567777888777    67888888888887652    22    3577888888887    788899999998888775

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.19  E-value=1.8e-05  Score=46.80  Aligned_cols=31  Identities=6%  Similarity=-0.181  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+++++|.++...|++++|+..+++++++.+
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4678899999999999999999999997643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.18  E-value=1.2e-06  Score=47.89  Aligned_cols=57  Identities=9%  Similarity=-0.056  Sum_probs=26.2

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ..+|..+...|++++|+..+++++....      ....++..+|.++...|++++|+..++++
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~~~~a   66 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDELQ------SRGDVKLAKADCLLETKQFELAQELLATI   66 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHHHH------TSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            3444444455555555555555444311      11234445555555555555555544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.13  E-value=2.2e-05  Score=46.27  Aligned_cols=66  Identities=14%  Similarity=0.041  Sum_probs=48.4

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.++|.++...|++++|+..+.+++..-...    ....++.+++.++...|+.++|...|++++..
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4567788888888888888888888877652221    12356778888888888888888888887754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.09  E-value=2.1e-05  Score=41.61  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=48.4

Q ss_pred             hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q psy10736         28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII   91 (104)
Q Consensus        28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~   91 (104)
                      +|..|...+..++|+++++++.+.    ++    ..+++++|.+|..    .+++++|+.+|+++.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            888888888899999999998764    33    4688999999998    89999999999999754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.09  E-value=5.7e-06  Score=48.76  Aligned_cols=64  Identities=13%  Similarity=0.030  Sum_probs=52.9

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ....+..+|..+...|++++|+..+++++....      ....++.++|.++...|++++|+..+++++.
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN------QNGEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC------cchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            345678899999999999999999999887622      1246789999999999999999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.04  E-value=2.6e-05  Score=48.99  Aligned_cols=60  Identities=23%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             HHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHL   89 (104)
Q Consensus        22 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~   89 (104)
                      ..+++.+|..|..    .+++++|+.+++++.+.    ++    ..++.++|.+|..    .+++++|+.+|+++.
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  142 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA  142 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            3455666666666    66666666666665432    22    2344555555555    455555555555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.02  E-value=3.8e-05  Score=47.19  Aligned_cols=68  Identities=13%  Similarity=0.024  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +....++..++..+...|++++|+.++++++.+-    ..   ..++..+|.++...|++++|++.|++|+.+-.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            4456677778888888899999999999999882    11   35678889999999999999999999998744

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.99  E-value=9.4e-06  Score=48.13  Aligned_cols=81  Identities=7%  Similarity=-0.080  Sum_probs=53.8

Q ss_pred             hHHHHHHHHh-C-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          6 NDRLKIAREF-G-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         6 ~~a~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      ++|+..+++. . ..+....++..+|..+...|++++|...|++++.+..  .++.   .++.++|.++...|++++|+.
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~~~~~~~~~~~A~~  155 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDPT---LVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--SCTH---HHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--cCcc---HHHHHHHHHHHHhcCHHHHHH
Confidence            4555555433 2 2344556788888888888999999999988876421  1111   256677777777777777777


Q ss_pred             HHHHHHHH
Q psy10736         84 YHLRHLII   91 (104)
Q Consensus        84 ~~~~a~~~   91 (104)
                      .|++++++
T Consensus       156 ~~~~a~~~  163 (308)
T 2ond_A          156 IFKKARED  163 (308)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHhc
Confidence            77777653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.98  E-value=0.00038  Score=38.14  Aligned_cols=70  Identities=21%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh-------------------HHHHHHHHHHHHHHHHhCCh
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR-------------------AVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g~~   78 (104)
                      +.....++..+|.++...++|..|..+|++++...+.....                   .......+.++.+|...+++
T Consensus        59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~  138 (167)
T 3ffl_A           59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD  138 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence            67788899999999999999999999999999887632111                   11235778999999999999


Q ss_pred             hHHHHHHHH
Q psy10736         79 PTAIDYHLR   87 (104)
Q Consensus        79 ~~A~~~~~~   87 (104)
                      .+|+..++.
T Consensus       139 ~~Ai~~Le~  147 (167)
T 3ffl_A          139 KDAIAILDG  147 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999988753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.95  E-value=4.8e-05  Score=37.79  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV   60 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   60 (104)
                      +++|+..+++. ...+....++..+|.++...|++++|+..+++++.+....++...
T Consensus        23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A           23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            45666555433 112233558899999999999999999999999999888777553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.95  E-value=0.00032  Score=43.52  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=75.1

Q ss_pred             HHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHH-HhCChhHHHHHHH
Q psy10736          9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYT-LLRDYPTAIDYHL   86 (104)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~   86 (104)
                      +..+...+|......++......|...+++..+..++.++....... .+|...+.....-|..+. ..++|..|..+|-
T Consensus       126 ~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~  205 (394)
T 3txn_A          126 LRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFY  205 (394)
T ss_dssp             HHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence            34444456678889999999999999999999999999999988776 677778888888899999 8999999999998


Q ss_pred             HHHHHHHHhcch
Q psy10736         87 RHLIIAQQLMDR   98 (104)
Q Consensus        87 ~a~~~~~~~~~~   98 (104)
                      ++.+-+...+.+
T Consensus       206 eaf~~f~~~~~~  217 (394)
T 3txn_A          206 EAFEGFDSVDSV  217 (394)
T ss_dssp             HHHHHHTTTCHH
T ss_pred             HHHhcccccccH
Confidence            887666555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.94  E-value=0.00031  Score=38.47  Aligned_cols=78  Identities=10%  Similarity=-0.036  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      .+..+++..-.......+.|+.|+-....++.+.....+   +.....++..+|+.++..++|..|...|++++.+.+..
T Consensus        17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            344555666667778889999999999999888776554   56678899999999999999999999999999988854


Q ss_pred             c
Q psy10736         96 M   96 (104)
Q Consensus        96 ~   96 (104)
                      .
T Consensus        97 ~   97 (167)
T 3ffl_A           97 S   97 (167)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.94  E-value=9.6e-05  Score=44.10  Aligned_cols=80  Identities=11%  Similarity=0.045  Sum_probs=62.6

Q ss_pred             HHHHHhCCHHHHHHHHHHhHHHHHHh-----ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCChhHHHH
Q psy10736         10 KIAREFGDKAAERRANSNLGNSHIFL-----GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL-LRDYPTAID   83 (104)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~   83 (104)
                      +.+-.+......+.++..+|..|...     |+.++|..+|++++++....     ...+....|..+.. .|+++++..
T Consensus       187 erAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~~gd~~~a~~  261 (301)
T 3u64_A          187 ERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIPLNNRAGFDE  261 (301)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred             HHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhcCCHHHHHH
Confidence            33444566667888999999999995     99999999999999984321     13566778888877 599999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      ++++++..-..
T Consensus       262 ~L~kAL~a~p~  272 (301)
T 3u64_A          262 ALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCGG
T ss_pred             HHHHHHcCCCC
Confidence            99999875443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.93  E-value=3.3e-05  Score=37.12  Aligned_cols=66  Identities=26%  Similarity=0.264  Sum_probs=45.1

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR   76 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   76 (104)
                      +.+|+..+++.- ..+....++.++|.++...|++++|+.++++++.+..      ....++.++|.++...|
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcC
Confidence            445555444321 1122356788999999999999999999999987621      12356778888887654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.91  E-value=3.6e-05  Score=48.19  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=44.2

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHH-H--HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNS-H--IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR----   76 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----   76 (104)
                      -+.+|+.+++..-  +....++.++|.+ +  ...+++++|+.+++++.+.    ++    ..+++++|.+|. .|    
T Consensus       232 d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          232 DEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQ----PRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             CHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHH-HCSSSC
T ss_pred             CHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHH-cCCCCC
Confidence            3456666666554  5556667777776 3  3456777777777776532    22    235556666655 44    


Q ss_pred             -ChhHHHHHHHHHH
Q psy10736         77 -DYPTAIDYHLRHL   89 (104)
Q Consensus        77 -~~~~A~~~~~~a~   89 (104)
                       ++++|+.+|+++.
T Consensus       301 ~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV  314 (452)
T ss_dssp             CCHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHh
Confidence             5666666665554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.80  E-value=0.00018  Score=51.16  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      .+++|++++++...    ..+++.+|.++...|++++|++.|.++       +++    ..+..++.++...|++++|++
T Consensus      1091 nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~----say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1091 NLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDP----SSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             hHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CCh----HHHHHHHHHHHHcCCHHHHHH
Confidence            35667777776654    456789999999999999999999876       332    456779999999999999999


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      +++.+.+..
T Consensus      1156 yL~mArk~~ 1164 (1630)
T 1xi4_A         1156 YLQMARKKA 1164 (1630)
T ss_pred             HHHHHHhhc
Confidence            999887644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.71  E-value=6.6e-06  Score=40.55  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHhC-CHHHHHH-HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERR-ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      +++|+..++..- ..+.... ++.++|.++...|++++|+.++++++.+....  ..    ++.+        +.+.++.
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~----~~~~--------~~~~~a~   81 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--PA----LQAR--------KMVMDIL   81 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--TH----HHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HH----HHHH--------HHHHHHH
Confidence            455555554331 1112234 78999999999999999999999998763221  11    1111        5567777


Q ss_pred             HHHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQQ   94 (104)
Q Consensus        83 ~~~~~a~~~~~~   94 (104)
                      .+|+++......
T Consensus        82 ~~~~~~~~~~p~   93 (99)
T 2kc7_A           82 NFYNKDMYNQLE   93 (99)
T ss_dssp             HHHCCTTHHHHC
T ss_pred             HHHHHHhccCcc
Confidence            777777665443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.70  E-value=6.1e-05  Score=41.01  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=43.4

Q ss_pred             HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh----------HHHHHHHHHHHHHHH
Q psy10736         33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP----------TAIDYHLRHLIIAQQ   94 (104)
Q Consensus        33 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~~~   94 (104)
                      ...+.+++|+..+++++++.      +.-..++.++|.++...++++          +|+..|++++++-..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            34568899999999988762      223467889999999888764          999999999987543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.62  E-value=0.00041  Score=34.93  Aligned_cols=55  Identities=22%  Similarity=0.117  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA   59 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   59 (104)
                      +++|+..++..- ..+....++..+|.++...|++++|+.++++++.+....++..
T Consensus        35 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   90 (115)
T 2kat_A           35 FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQ   90 (115)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHH
Confidence            445555444321 1123356789999999999999999999999999987776654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.54  E-value=0.0002  Score=42.40  Aligned_cols=68  Identities=12%  Similarity=0.048  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhHHHHHH-------hccH-------HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736         19 AAERRANSNLGNSHIF-------LGEY-------QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +....++..+|..+..       .|++       ++|+..+++++...     .+....++.++|.++...|++++|...
T Consensus        47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~  121 (308)
T 2ond_A           47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-----LKKNMLLYFAYADYEESRMKYEKVHSI  121 (308)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3445566777766653       4775       89999999988721     112235788999999999999999999


Q ss_pred             HHHHHHH
Q psy10736         85 HLRHLII   91 (104)
Q Consensus        85 ~~~a~~~   91 (104)
                      |++++++
T Consensus       122 ~~~al~~  128 (308)
T 2ond_A          122 YNRLLAI  128 (308)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhc
Confidence            9999975

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.46  E-value=0.00079  Score=42.48  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHH-----------------
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY-----------------   66 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-----------------   66 (104)
                      .|++|...+...       ..+..++.++...|++++|++.++++...-.    ......++.                 
T Consensus       137 ~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~----Wk~v~~aCv~~~ef~lA~~~~l~L~~  205 (449)
T 1b89_A          137 MYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRT----WKEVCFACVDGKEFRLAQMCGLHIVV  205 (449)
T ss_dssp             CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHH----HHHHHHHHHHTTCHHHHHHTTTTTTT
T ss_pred             CHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHcCCchh----HHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence            355566666554       3467788888888888888888887732200    011112222                 


Q ss_pred             ------HHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         67 ------SLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        67 ------~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                            .+...|...|.+++|+.++++++.+
T Consensus       206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          206 HADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence                  3447788888888888888888643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.37  E-value=0.00045  Score=43.84  Aligned_cols=78  Identities=8%  Similarity=-0.086  Sum_probs=41.1

Q ss_pred             HHHHHHHHhC--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736          7 DRLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus         7 ~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +|+..++..-  ..+....++..++..+...|++++|...|++++.+..  .++   ..++.+.+.++...|++++|...
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~---~~~~~~~~~~~~~~~~~~~A~~~  378 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDP---TLVYIQYMKFARRAEGIKSGRMI  378 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--SCH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc--cCc---hHHHHHHHHHHHHhcCHHHHHHH
Confidence            4555444332  1233455666777777777777777777777765311  111   12344444444444445555555


Q ss_pred             HHHHH
Q psy10736         85 HLRHL   89 (104)
Q Consensus        85 ~~~a~   89 (104)
                      |++++
T Consensus       379 ~~~Al  383 (530)
T 2ooe_A          379 FKKAR  383 (530)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.30  E-value=0.00061  Score=42.67  Aligned_cols=27  Identities=4%  Similarity=-0.102  Sum_probs=20.0

Q ss_pred             HHHHhHHHHHHhc---cHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLG---EYQAASEHYKRTLV   50 (104)
Q Consensus        24 ~~~~l~~~~~~~~---~~~~A~~~~~~al~   50 (104)
                      +++++|.++...|   ++++|+.+++++.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~  207 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVS  207 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence            6677777777777   77778777777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.27  E-value=0.002  Score=34.83  Aligned_cols=47  Identities=19%  Similarity=0.128  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHhC--C-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREFG--D-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         5 ~~~a~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .++++.+.+..-  + +.....+++++|..+...|+|++|.+++++++++
T Consensus        51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            456666665442  2 4467889999999999999999999999998876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.20  E-value=0.001  Score=33.27  Aligned_cols=32  Identities=19%  Similarity=0.068  Sum_probs=29.1

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      ....++..+|.++...|+++.|+.++++++.+
T Consensus        44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A           44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45678999999999999999999999999876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.17  E-value=0.006  Score=43.87  Aligned_cols=81  Identities=9%  Similarity=-0.034  Sum_probs=56.6

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH-------------hCChHHH--------H
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-------------LGDRAVE--------A   62 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------~~~~~~~--------~   62 (104)
                      .+++|++.+.+.++.    ..+..++.++...|++++|++++..++...+.             .+.....        .
T Consensus      1120 ~~kEAIdsYiKAdD~----say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ 1195 (1630)
T 1xi4_A         1120 MVKEAIDSYIKADDP----SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN 1195 (1630)
T ss_pred             CHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH
Confidence            467888888777664    44577899999999999999999887643311             0111000        1


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ..+..+|..+...|++++|..+|.++
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            23557888888888888888888776

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.13  E-value=0.0026  Score=40.69  Aligned_cols=64  Identities=20%  Similarity=0.182  Sum_probs=55.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ..+++..+|........+..|..+|.+|..+....|      ..++.+|.+....|+.-+|+.+|-+++.
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            346788999999999999999999999999865555      5678999999999999999999998873

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.07  E-value=0.00031  Score=44.26  Aligned_cols=52  Identities=21%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ++.++|..+...|.+++|..+|.++              ..+..++.++...|++++|++.++++.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence            7788888888888888888888765              246688899999999999999988883

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.98  E-value=0.011  Score=30.93  Aligned_cols=66  Identities=12%  Similarity=0.113  Sum_probs=46.5

Q ss_pred             HHHHHHhHHHHHHhccHHH---HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQA---ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..+-.++|.++....+...   ++..++..+   +. +++...-.+++.+|..+...|+|.+|..+++..++.
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~---~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELL---PK-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT---TT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hc-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3456667777776665554   555444422   22 334455678999999999999999999999988865

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.91  E-value=0.005  Score=39.09  Aligned_cols=27  Identities=11%  Similarity=-0.039  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         64 ACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ++..++..+...|+.++|...|++++.
T Consensus       427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          427 YVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence            344555555566666666666666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.82  E-value=0.0099  Score=35.85  Aligned_cols=65  Identities=11%  Similarity=-0.042  Sum_probs=51.1

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+..+|.++...|++++|++++.+.++.    ++......++..++.++...|+.+.|.+.++++.+..
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~  166 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI  166 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            3468899999999999999999887542    1112345677888999999999999999998876553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.80  E-value=0.013  Score=35.18  Aligned_cols=53  Identities=15%  Similarity=-0.031  Sum_probs=41.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-----CChhHHHHHHHHHHHHHH
Q psy10736         37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-----RDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~   93 (104)
                      ....|...+++++++    ........++..+|.+|...     |+.++|..+|++++++..
T Consensus       178 ~l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP  235 (301)
T 3u64_A          178 TVHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS  235 (301)
T ss_dssp             HHHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC
Confidence            346666667776665    33444578999999999995     999999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.77  E-value=0.0049  Score=39.98  Aligned_cols=65  Identities=9%  Similarity=-0.022  Sum_probs=48.8

Q ss_pred             HHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR--DYPTAIDYHLRHL   89 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~   89 (104)
                      ..+++..+.+....++          +++++..+++++..-.+      -..++...+.++...+  +++++++++++++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l  136 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            4567777788877777          88888888888764221      2356788888888888  6689999999888


Q ss_pred             HHH
Q psy10736         90 IIA   92 (104)
Q Consensus        90 ~~~   92 (104)
                      ++-
T Consensus       137 ~~d  139 (567)
T 1dce_A          137 EAD  139 (567)
T ss_dssp             HHC
T ss_pred             hhc
Confidence            763

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.015  Score=36.53  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=42.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ...++..+-.++...+++..+..++.++.......+++..........|.++...++|..|..+|.++.
T Consensus       167 kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~  235 (429)
T 4b4t_R          167 KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL  235 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence            345555555666666666666666666666655555555555555566666666666766666665543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.72  E-value=0.03  Score=33.80  Aligned_cols=86  Identities=8%  Similarity=-0.086  Sum_probs=51.9

Q ss_pred             chhHHHHHHHHh-CCH--HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC--Ch
Q psy10736          4 QPNDRLKIAREF-GDK--AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR--DY   78 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~   78 (104)
                      -+++|+.++.+. +..  .....++..++.++...|+.+.|...+++..+.....-...........-+++....|  ++
T Consensus       115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~  194 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA  194 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT
T ss_pred             CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH
Confidence            367788887765 322  2456667777889999999999999998764431100000111223333344455555  77


Q ss_pred             hHHHHHHHHHH
Q psy10736         79 PTAIDYHLRHL   89 (104)
Q Consensus        79 ~~A~~~~~~a~   89 (104)
                      ++|...|++..
T Consensus       195 q~A~~~f~El~  205 (310)
T 3mv2_B          195 TSNFYYYEELS  205 (310)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0093  Score=37.39  Aligned_cols=76  Identities=14%  Similarity=0.070  Sum_probs=62.0

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      ...++..+|..|...|++++|.+.+.++.+.....+.   ...+++.+-.++...+++..+..++.++..+....+++.
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~  205 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE  205 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH
Confidence            4456788999999999999999999998876654433   346777888889999999999999999988877666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.41  E-value=0.035  Score=29.07  Aligned_cols=46  Identities=20%  Similarity=0.149  Sum_probs=37.2

Q ss_pred             hHHHHHHHHhC--C-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          6 NDRLKIAREFG--D-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         6 ~~a~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .+++.+.+.+-  + +...-.+++.+|..++..|+|++|.++++..+++
T Consensus        55 ~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           55 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            35666665542  2 4578899999999999999999999999998776

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.28  E-value=0.047  Score=29.22  Aligned_cols=67  Identities=13%  Similarity=0.044  Sum_probs=46.6

Q ss_pred             HHHHHHHHhHHHHHHhccHH---HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQ---AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .-..+..+.+.+.....+..   +++..++.   +++...+  ..-.+++.++..+...|+|.+|..+.+..++.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~---l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTD---IYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHH---HHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            34556677777777776544   55555544   4444332  23468899999999999999999999888754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.14  E-value=0.054  Score=28.64  Aligned_cols=64  Identities=13%  Similarity=0.034  Sum_probs=44.8

Q ss_pred             HHHHHhHHHHHHhcc---HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGE---YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+-.+.|.+.....+   ..+++..++..   ++..  +...-.+++.++..+...|+|.+|..+.+..++.
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l---~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDI---YKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHH---HHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHH---HhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            455666666666654   44566666553   3332  3334578999999999999999999999888754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.13  Score=32.54  Aligned_cols=83  Identities=12%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+.......+......+...+++..|...+.++...... ...+......+...|.++...++|.+|-.+|.++++....
T Consensus       171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            455667788888889999999999999999998654444 3456666788888899999999999999999999887766


Q ss_pred             hcch
Q psy10736         95 LMDR   98 (104)
Q Consensus        95 ~~~~   98 (104)
                      .+++
T Consensus       251 ~~d~  254 (445)
T 4b4t_P          251 KSDE  254 (445)
T ss_dssp             HSCH
T ss_pred             cCCH
Confidence            6554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=95.83  E-value=0.03  Score=33.63  Aligned_cols=85  Identities=12%  Similarity=-0.152  Sum_probs=57.1

Q ss_pred             CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhc--cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH----HHh
Q psy10736          3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLG--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY----TLL   75 (104)
Q Consensus         3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~----~~~   75 (104)
                      .+-++|+.+.... .-.|.-..+++..+.+....+  ++++++..+.+++....+.      ..+++..+.++    ...
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~------y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN------YQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC------CHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc------HHHHHHHHHHHHHHHHhc
Confidence            3445566544332 222233456777888888888  9999999999988653322      24556666666    555


Q ss_pred             ---CChhHHHHHHHHHHHHHH
Q psy10736         76 ---RDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        76 ---g~~~~A~~~~~~a~~~~~   93 (104)
                         +++++++.+++++++...
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~p  141 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDP  141 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCT
T ss_pred             cccCCHHHHHHHHHHHHHhCC
Confidence               789999999999987543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.78  E-value=0.23  Score=32.96  Aligned_cols=89  Identities=11%  Similarity=0.085  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH------HHHhCChHHHHHH---H-----HH-HH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL------AQDLGDRAVEAQA---C-----YS-LG   69 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~---~-----~~-l~   69 (104)
                      ++.|+++++...++    ..+..+|..+...++++.|+.+|.++-+.      ....++......+   .     .+ ..
T Consensus       668 ~~~A~~~~~~~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~  743 (814)
T 3mkq_A          668 LTLARDLLTDESAE----MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF  743 (814)
T ss_dssp             HHHHHHHHTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhCcH----hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence            34555555555443    45688999999999999999999985332      2233443322111   0     11 23


Q ss_pred             HHHHHhCChhHHHHHHH------HHHHHHHHhcc
Q psy10736         70 NTYTLLRDYPTAIDYHL------RHLIIAQQLMD   97 (104)
Q Consensus        70 ~~~~~~g~~~~A~~~~~------~a~~~~~~~~~   97 (104)
                      .++...|++++|++.|.      +|+.+++..+.
T Consensus       744 ~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~  777 (814)
T 3mkq_A          744 NAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGL  777 (814)
T ss_dssp             HHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            35666788888887764      45666666553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.081  Score=35.77  Aligned_cols=60  Identities=17%  Similarity=0.057  Sum_probs=48.5

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      ..+...+..+...|+++-|+...++|...+      +....++..|+.+|..+|+|+.|+=.+..+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELA------LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcC------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            355556777788899999999999987763      334578899999999999999999777655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.53  E-value=0.028  Score=36.51  Aligned_cols=64  Identities=6%  Similarity=-0.166  Sum_probs=51.6

Q ss_pred             HHHHHHhHHHHHHhc--cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLG--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR-DYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~   91 (104)
                      -.++++.+.+....+  +++++++++.++++.-.      .-..++.+.+.+....| .+++++++++++++.
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~  173 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADE------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            456788888888899  77999999999988621      11367888899999999 899999999888754

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=95.48  E-value=0.088  Score=26.07  Aligned_cols=68  Identities=10%  Similarity=-0.088  Sum_probs=47.7

Q ss_pred             hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      .|..+...|+|-+|-+.++..-.-.+........+.+....|..+...|+.  |...+.+++......+.
T Consensus         7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~   74 (94)
T 2cwy_A            7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC   74 (94)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence            345566779999998888875443322112334566777778888888988  99999999998776654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.43  E-value=0.034  Score=29.41  Aligned_cols=46  Identities=20%  Similarity=0.150  Sum_probs=35.3

Q ss_pred             hHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          6 NDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         6 ~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .+++.+.+.+  .++...-.+++.+|..+...|+|++|.++.+..+++
T Consensus        60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3555555433  234467889999999999999999999999987765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.18  E-value=0.042  Score=26.91  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      +.-..++..+|..+...|++++|+.++++.++....
T Consensus        40 p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           40 PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            344677888999999999999999999998765433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.06  E-value=0.037  Score=29.62  Aligned_cols=46  Identities=20%  Similarity=0.127  Sum_probs=34.6

Q ss_pred             hHHHHHHHHhC--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          6 NDRLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         6 ~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      ++++.+.+.+-  ++...-.+++.+|..+...|+|++|.++.+..+++
T Consensus        59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            34555554432  22356778999999999999999999999987765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.37  Score=30.50  Aligned_cols=72  Identities=15%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+++...++..+...|++.+|...+.....-.....+.......+.....++...+++.+|...++++....
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~  207 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT  207 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            566778899999999999999999988654333344556667888888999999999999999999986533

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.92  E-value=0.36  Score=29.98  Aligned_cols=34  Identities=0%  Similarity=-0.252  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         59 AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        59 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +....++..++..+...|++++|+..+++++.+-
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln  307 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE  307 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            3345678888888999999999999999999883

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.021  Score=36.84  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=58.7

Q ss_pred             CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .|....+..++.+-..|...+.++.|..+..++.  +... ......+.-++.+|.++...++|.+|.+++..|+..+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            4556777788888888999999999999888864  2222 2333457788899999999999999999999988544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=94.58  E-value=0.37  Score=29.36  Aligned_cols=48  Identities=10%  Similarity=0.048  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC--hhHHHHHHHHHHHH
Q psy10736         38 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD--YPTAIDYHLRHLII   91 (104)
Q Consensus        38 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~   91 (104)
                      +++++.++.+++....+      -..++...+.++...|+  +++++.++.+++++
T Consensus        90 l~~EL~~~~~~L~~~PK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~  139 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFLEA  139 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence            45555555555443111      12345555666666653  56666666666654

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=94.52  E-value=0.12  Score=28.22  Aligned_cols=69  Identities=9%  Similarity=0.029  Sum_probs=50.4

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-----hHHHHHHH-HHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----RAVEAQAC-YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      +.-+..+...|+|-+|-+.++..-   +....     ....+.+. ...|..+...|+...|...+.+++........
T Consensus        36 ~~~~i~lFn~g~yfeaHEvLEe~W---~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~  110 (161)
T 2ijq_A           36 VVHGVRLYNSGEFHESHDCFEDEW---YNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN  110 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT---TTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHH---HhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            334556666799999988887743   33322     23456667 77788889999999999999999998766543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.49  E-value=0.3  Score=27.10  Aligned_cols=79  Identities=13%  Similarity=0.003  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH------HHhCChHHHHHH---------HHHHH
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA------QDLGDRAVEAQA---------CYSLG   69 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~---------~~~l~   69 (104)
                      ++.|+++++..++.    ..+..+|......|+++-|..+|.++-+..      ...|+.......         ++...
T Consensus        21 l~~A~e~a~~l~~~----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af   96 (177)
T 3mkq_B           21 LDAALDEAKKLNDS----ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSML   96 (177)
T ss_dssp             HHHHHHHHHHHCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCH----HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHH
Confidence            56777777777553    367889999999999999999999865443      234443322111         11224


Q ss_pred             HHHHHhCChhHHHHHHHH
Q psy10736         70 NTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        70 ~~~~~~g~~~~A~~~~~~   87 (104)
                      .+++..|+.+++++.+.+
T Consensus        97 ~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           97 LNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            456677888877776644

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.38  E-value=0.36  Score=28.99  Aligned_cols=62  Identities=2%  Similarity=-0.243  Sum_probs=45.4

Q ss_pred             HHHHhHHHH----HHh---ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh--HHHHHHHHHHHH
Q psy10736         24 ANSNLGNSH----IFL---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP--TAIDYHLRHLII   91 (104)
Q Consensus        24 ~~~~l~~~~----~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~   91 (104)
                      +++..+.+.    ...   +++++++..+.++++.-.+      -..++...+.+....|.++  +++++++++++.
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT  175 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence            445555555    445   6889999999998864211      1357788888888899988  999999998864

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.01  E-value=0.9  Score=32.32  Aligned_cols=68  Identities=3%  Similarity=-0.156  Sum_probs=45.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      ....|+.+-..+...|+.++|...+.+......+.-.+.  ..+|+.+-..|...|+.++|.+.|+++.+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~  193 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKD  193 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            445677777788888888888888876544333222222  24677777777788888888887777653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.95  E-value=0.27  Score=26.78  Aligned_cols=66  Identities=8%  Similarity=-0.050  Sum_probs=49.4

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..+...+.. ...+|.++|.+.|+.++.+    +...  +.++..-+..-.++|+...|...+.+++.++.
T Consensus        60 YI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~----hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           60 FARIQVRFAEL-KAIQEPDDARDYFQMARAN----CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            34444444433 4558999999999999886    2223  66777778888899999999999999987554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.89  E-value=0.66  Score=28.75  Aligned_cols=67  Identities=15%  Similarity=0.007  Sum_probs=49.3

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+...++..+...|++++++..+.+.+...     |... .++..+-.++...|+..+|+..|+++-....
T Consensus       170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~  236 (388)
T 2ff4_A          170 KVLAHTAKAEAEIACGRASAVIAELEALTFEH-----PYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLA  236 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34556667778888899999998888765431     2111 3556666778999999999999999987543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.67  E-value=0.68  Score=28.22  Aligned_cols=64  Identities=6%  Similarity=-0.167  Sum_probs=49.1

Q ss_pred             HHHHHHhHHHHHHhc--cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLG--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD-YPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~   91 (104)
                      -.+++..+.+....+  ++++++.++.++++.-.  .+    ..++...+.+....|. ++++++++.++++.
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rN----y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~  174 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RN----FHCWDYRRFVAAQAAVAPAEELAFTDSLITR  174 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence            445677777777777  48999999999887521  11    3567888888888898 58999999999865

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.66  E-value=0.82  Score=29.35  Aligned_cols=62  Identities=10%  Similarity=-0.030  Sum_probs=34.0

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      .+|+.+-..+...|++++|.+.+.+...    .+-.+. ..+++.+-..|...|+.++|.+.+++..
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3566666777777777777777766432    121111 1334444455555555555555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=93.56  E-value=0.18  Score=30.96  Aligned_cols=82  Identities=11%  Similarity=-0.039  Sum_probs=52.4

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhc-cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-C-Chh
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-R-DYP   79 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~   79 (104)
                      +..+++++.... ...+.-..+++..+.+....+ .+++++..+.+++....   .   -..++...+.++... + +++
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---K---ny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---K---SYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---C---CHHHHHHHHHHHHHHCCSCCH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHhcCCChH
Confidence            334555544332 111223445677777777788 58899998888774321   1   135677778887777 7 788


Q ss_pred             HHHHHHHHHHHH
Q psy10736         80 TAIDYHLRHLII   91 (104)
Q Consensus        80 ~A~~~~~~a~~~   91 (104)
                      ++++++.++++.
T Consensus       143 ~EL~~~~k~L~~  154 (349)
T 3q7a_A          143 SEIEYIHGSLLP  154 (349)
T ss_dssp             HHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHh
Confidence            888888887754

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=93.47  E-value=0.6  Score=26.98  Aligned_cols=68  Identities=3%  Similarity=-0.194  Sum_probs=48.9

Q ss_pred             HHHhHHHHHHh-----ccHHHHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFL-----GEYQAASEHYKRTLVLAQDL---GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        25 ~~~l~~~~~~~-----~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +.-.|..|...     |+.+.|...|+.|.++++..   .+|..++.+++.-...|.-.+++++|....++++...
T Consensus       123 ~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          123 LKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            33346555543     55789999999999998852   2344455666665556677899999999999998764

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=93.06  E-value=0.24  Score=23.66  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=25.4

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      ...+|.-|...|+|+.|+.+|+.+++...+
T Consensus        15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k   44 (78)
T 2rpa_A           15 NVKLAREYALLGNYDSAMVYYQGVLDQMNK   44 (78)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999876554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=92.87  E-value=0.87  Score=28.02  Aligned_cols=64  Identities=8%  Similarity=-0.106  Sum_probs=47.2

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR-DYPTAIDYHLRHLIIA   92 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~   92 (104)
                      .++..+.......+..++|++.+.+++.+-.      .-..+++..+.++...| ++++++.++++++...
T Consensus        55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n  119 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN  119 (349)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            3444454555556677899999999887622      22367888899999999 5999999999998654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.52  E-value=1.3  Score=28.40  Aligned_cols=65  Identities=9%  Similarity=-0.151  Sum_probs=50.3

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..+|+.+-..+...|+.++|.+.+.+..+    .|-.+. ..++..+-..+...|+.++|.+.+++..+.
T Consensus       140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          140 LRSYGPALFGFCRKGDADKAYEVDAHMVE----SEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cceehHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            44677777889999999999999988643    232222 256788888999999999999999987654

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=92.40  E-value=0.45  Score=22.70  Aligned_cols=31  Identities=26%  Similarity=0.334  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         65 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      ...+|.-|...|+|+.|+.+|+.+++...++
T Consensus        15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~   45 (78)
T 2rpa_A           15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY   45 (78)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999876654

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=92.37  E-value=1  Score=26.72  Aligned_cols=67  Identities=21%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             HHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-h----CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-L----GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        25 ~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      +.-.|..|...-+          .+.|.+.|++|.++++. .    -+|..++.+++.-...|.-.+++++|....++++
T Consensus       145 ~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AF  224 (268)
T 3efz_A          145 IKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAI  224 (268)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3333777665421          37788999999999864 3    3345555555544444446899999999999887


Q ss_pred             HH
Q psy10736         90 II   91 (104)
Q Consensus        90 ~~   91 (104)
                      +-
T Consensus       225 de  226 (268)
T 3efz_A          225 QA  226 (268)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=92.34  E-value=0.52  Score=23.26  Aligned_cols=35  Identities=11%  Similarity=0.134  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      +-..+..+...+..+...|.|++|+++.+++...+
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL   45 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYL   45 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            34456666777777788888888888888876653

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=92.18  E-value=1.1  Score=28.03  Aligned_cols=78  Identities=22%  Similarity=0.214  Sum_probs=52.2

Q ss_pred             CCHHHHHHHHHHhHHHHHHhc--cHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLG--EYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      |.....-.++.+||...-..-  ....++..|.+++..++.. ++.  .+.-+..+|..++..+++.+|+..+-++-...
T Consensus       249 GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~--HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi  326 (472)
T 3re2_A          249 GHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH--HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVA  326 (472)
T ss_dssp             TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC--CccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence            333333444555555443321  2234889999999888765 332  24667888999999999999999998887766


Q ss_pred             HHh
Q psy10736         93 QQL   95 (104)
Q Consensus        93 ~~~   95 (104)
                      ...
T Consensus       327 ~~Y  329 (472)
T 3re2_A          327 GKY  329 (472)
T ss_dssp             TTS
T ss_pred             HHc
Confidence            554

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=92.08  E-value=1.1  Score=28.54  Aligned_cols=79  Identities=13%  Similarity=0.022  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHHhHHHHHHhc--cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLG--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      |.....-.++.+||.+.-..-  ..+.++..|.+|+..++..-.. ..+..|..+|-.+...+++.+|+..+-++-....
T Consensus       256 Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~-~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~  334 (489)
T 4gq4_A          256 GHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRD-EHIYPYMYLAGYHCRNRNVREALQAWADTATVIQ  334 (489)
T ss_dssp             TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTT-CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             cchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhccc-CcccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence            433344455666666554332  2245788999999998875321 2357788999999999999999999988876655


Q ss_pred             Hh
Q psy10736         94 QL   95 (104)
Q Consensus        94 ~~   95 (104)
                      +.
T Consensus       335 ~Y  336 (489)
T 4gq4_A          335 DY  336 (489)
T ss_dssp             TS
T ss_pred             hc
Confidence            44

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=91.79  E-value=0.58  Score=22.67  Aligned_cols=38  Identities=11%  Similarity=-0.004  Sum_probs=30.2

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      .....+..+...|.-.-..|++++|+.+|..+++.+-.
T Consensus        11 ~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           11 PQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            44555666777777888889999999999999988653

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=91.72  E-value=0.64  Score=22.95  Aligned_cols=36  Identities=14%  Similarity=0.036  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         58 RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        58 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +...+..+...+..+...|.|++|+++.+++.....
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~   46 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   46 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            344566677777888888888888888888775544

>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}

Probab=91.69  E-value=1.3  Score=26.65  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=67.9

Q ss_pred             CchhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccH--HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh----
Q psy10736          3 VQPNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEY--QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----   75 (104)
Q Consensus         3 ~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----   75 (104)
                      +++.+|..+++. ..|......++..+.........+  +.-.....++...+.+.=..+....+.+..+..+|..    
T Consensus       123 EFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~  202 (298)
T 2r17_C          123 EFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTD  202 (298)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTT
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccc
Confidence            467889998887 788888888888887777666543  3333333444444444445566777888888888751    


Q ss_pred             ------CChhHHHHHHHHHHHHHHHhcch
Q psy10736         76 ------RDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        76 ------g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                            .|.+..+++++++++++...-++
T Consensus       203 ~~~~~~rd~krVleCLqkaLkiA~~~~d~  231 (298)
T 2r17_C          203 KNGEELHGGKRVMECLKKALKIANQCMDP  231 (298)
T ss_dssp             TTTCBCCCHHHHHHHHHHHHHHHHHSCCH
T ss_pred             cchhhccchHHHHHHHHHHHHHHHHHhCh
Confidence                  46779999999999999988554

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=91.58  E-value=0.62  Score=22.57  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +..+...+.-....|++++|+.+|..+++.+-.
T Consensus        16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            334445555567778888888888888876543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=91.34  E-value=0.65  Score=22.35  Aligned_cols=34  Identities=15%  Similarity=0.086  Sum_probs=24.7

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      .+.-+...|...-..|++++|+.+|.++++.+..
T Consensus        18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3444555666677778899999999988887653

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=91.28  E-value=0.66  Score=22.32  Aligned_cols=29  Identities=10%  Similarity=-0.114  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         66 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        66 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...|.-....|++++|+.+|.++++.+..
T Consensus        23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           23 AINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34455667889999999999999887654

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=91.02  E-value=1.6  Score=27.88  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=49.2

Q ss_pred             HHHHHHhHHHHHHhc--cHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736         22 RRANSNLGNSHIFLG--EYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL   95 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   95 (104)
                      -+++.+||...-..-  .-..++..|.+++..++..- +.  .+.-+..+|..++..+++.+|+..+-++-......
T Consensus       277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~--HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y  351 (550)
T 3u84_A          277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDE--HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDY  351 (550)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTC--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccC--CccceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence            344445544433321  11257889999998887652 32  24667888999999999999999998887766554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.71  E-value=0.77  Score=22.05  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=16.8

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +.-+...|...-..|++++|+.+|.++++.
T Consensus        11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           11 ARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            334444455555556666666666666554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=89.11  E-value=1.1  Score=21.49  Aligned_cols=25  Identities=16%  Similarity=0.074  Sum_probs=16.6

Q ss_pred             HHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         70 NTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        70 ~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .-....|++++|+.+|..+++.+..
T Consensus        19 ve~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A           19 VKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777776543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=88.83  E-value=1.5  Score=22.59  Aligned_cols=33  Identities=12%  Similarity=0.108  Sum_probs=24.8

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      +..+...|.-.-..|++++|+.+|..+++++..
T Consensus        18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A           18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            334455555666779999999999999998654

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=88.82  E-value=2.4  Score=25.07  Aligned_cols=77  Identities=17%  Similarity=0.011  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +....+..+.-.|..|...-+          -+.|.+.|++|.+++.. ..  +|..++.+++.-...|.-.+++++|..
T Consensus       141 ~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~  220 (261)
T 3ubw_A          141 TGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACR  220 (261)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344444444445777665422          26788999999998864 32  455555555554444555799999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      ..++++.-+-
T Consensus       221 LAk~AFd~Ai  230 (261)
T 3ubw_A          221 LAKAAFDDAI  230 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888876553

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=88.81  E-value=1.5  Score=22.58  Aligned_cols=18  Identities=11%  Similarity=0.121  Sum_probs=8.8

Q ss_pred             HhCChhHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~   91 (104)
                      ..|++++|+.+|..++++
T Consensus        30 ~ag~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           30 KAGNYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHH
Confidence            334555555555555443

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=88.18  E-value=2.6  Score=24.58  Aligned_cols=76  Identities=14%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +....+..+.-.|..|...-+          -+.|.+.|++|.+++.. ..  +|..++.+++.-...|.-.+++++|..
T Consensus       118 ~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~  197 (236)
T 3iqu_A          118 DAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAIS  197 (236)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             chHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344444444455777766422          37788999999998864 33  355556565554455556799999998


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      ..++++.-+
T Consensus       198 lAk~Afd~A  206 (236)
T 3iqu_A          198 LAKTTFDEA  206 (236)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887644

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=88.12  E-value=2.1  Score=28.77  Aligned_cols=65  Identities=15%  Similarity=0.019  Sum_probs=48.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHH-HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAAS-EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..++...+......|+.++|. ..+.+++....   ..   ...+...+......|+++.|...|++++...
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---NS---AVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---CC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            344555566667778888897 99999876432   11   2446677888889999999999999999864

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.90  E-value=3.1  Score=25.24  Aligned_cols=91  Identities=10%  Similarity=-0.044  Sum_probs=61.3

Q ss_pred             CchhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHH------------HHHHHh--CChHHHHHHHHH
Q psy10736          3 VQPNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTL------------VLAQDL--GDRAVEAQACYS   67 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------------~~~~~~--~~~~~~~~~~~~   67 (104)
                      ++.++++.+....++ +.+....+..+|..+..-+++.+|..++..+-            +..++.  +.+.........
T Consensus       114 ~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R  193 (312)
T 2wpv_A          114 DVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR  193 (312)
T ss_dssp             HHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence            456788899887755 45556678888999999999999999875221            112222  554443333333


Q ss_pred             HHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         68 LGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        68 l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...-|...|+...|...++.......
T Consensus       194 aVL~yL~l~n~~~A~~~~~~f~~~~~  219 (312)
T 2wpv_A          194 LVFNYLFISNISFAHESKDIFLERFI  219 (312)
T ss_dssp             HHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence            34457788999999999988776553

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.87  E-value=1.8  Score=22.33  Aligned_cols=29  Identities=24%  Similarity=0.153  Sum_probs=12.5

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLV   50 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~   50 (104)
                      +..+.+.|...-..|+.+.|+++|++.+.
T Consensus        22 AF~~Is~AL~~DE~g~k~~Al~lYk~GI~   50 (116)
T 2dl1_A           22 AFLFVNKGLNTDELGQKEEAKNYYKQGIG   50 (116)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            33334444444444444444444444443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=86.93  E-value=2.1  Score=24.13  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLV   50 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   50 (104)
                      ...+...+.+|..+...+++.+|.+.+.+|..
T Consensus        11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~   42 (203)
T 3t5x_A           11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFE   42 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            34445555556666666666666666655543

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=86.89  E-value=3.3  Score=24.48  Aligned_cols=76  Identities=17%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +....+..+.-.|..|...-+          .+.|...|++|.++++. ..  +|..++.+++.-...|.-.+++++|..
T Consensus       120 ~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~  199 (260)
T 1o9d_A          120 SGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACN  199 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             CchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            334444444445666665532          25788899999999874 33  355555555554555556799999988


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      ..++++.-+
T Consensus       200 lAk~Afd~A  208 (260)
T 1o9d_A          200 LAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877776544

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=85.81  E-value=2  Score=21.02  Aligned_cols=34  Identities=15%  Similarity=-0.003  Sum_probs=26.6

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD   54 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   54 (104)
                      .+.-+...|.-.-..|++++|+.+|..+++.+..
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3444556667777789999999999999998764

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=85.68  E-value=3.3  Score=23.34  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .+.-++.+|.++...++|.+|.+.+..|+..+..
T Consensus        13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~   46 (203)
T 3t5x_A           13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR   46 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence            4456677777777777777777777777766443

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=85.38  E-value=2  Score=20.55  Aligned_cols=35  Identities=11%  Similarity=-0.072  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA   52 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   52 (104)
                      ....+..+...|.-.-..|++++|+.+|..+++.+
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l   43 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL   43 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44455556666666666778888888888877763

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=85.13  E-value=4  Score=23.74  Aligned_cols=78  Identities=17%  Similarity=0.010  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +....+..+.-.|..|...-+          .+.|...|++|.++++. ..  +|..++.+++.-...|.-.+++++|..
T Consensus       115 ~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~  194 (234)
T 2br9_A          115 TGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACR  194 (234)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             chHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            334444444445666655432          25788899999999874 32  355555555554555556899999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         84 YHLRHLIIAQQ   94 (104)
Q Consensus        84 ~~~~a~~~~~~   94 (104)
                      ..++++.-+-.
T Consensus       195 lAk~afd~Ai~  205 (234)
T 2br9_A          195 LAKAAFDDAIA  205 (234)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888765443

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=85.02  E-value=2.1  Score=20.47  Aligned_cols=19  Identities=16%  Similarity=0.022  Sum_probs=9.0

Q ss_pred             HHhCChhHHHHHHHHHHHH
Q psy10736         73 TLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        73 ~~~g~~~~A~~~~~~a~~~   91 (104)
                      ...|++++|+.+|..+++.
T Consensus        24 D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           24 DTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            3344455555555444443

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=84.79  E-value=5.9  Score=25.42  Aligned_cols=73  Identities=15%  Similarity=0.003  Sum_probs=51.9

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH-HHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-----LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII-AQQ   94 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~   94 (104)
                      .....+.+-.+|...++..-+...+.. ++-...     .-.....+.-++.+|.++...++|.+|.+++..|+.. +..
T Consensus       175 ~l~l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~  253 (455)
T 3t5v_B          175 LLYLVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL  253 (455)
T ss_dssp             HHHHHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence            344455566778888888888776643 332211     1112345778889999999999999999999999988 653

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=84.72  E-value=4.3  Score=23.83  Aligned_cols=76  Identities=11%  Similarity=-0.000  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAIDYH   85 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   85 (104)
                      ...+..+.-.|..|...-+          .+.|...|++|.+++.. ..  +|..++.+++.-...|.-.+++++|....
T Consensus       118 eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lA  197 (248)
T 3uzd_A          118 ESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLA  197 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             hHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444444445776665422          36788899999998864 33  45555555555444455689999999988


Q ss_pred             HHHHHHHHH
Q psy10736         86 LRHLIIAQQ   94 (104)
Q Consensus        86 ~~a~~~~~~   94 (104)
                      ++++.-+-.
T Consensus       198 k~Afd~Ai~  206 (248)
T 3uzd_A          198 KTAFDDAIA  206 (248)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888765543

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=84.03  E-value=2.6  Score=20.67  Aligned_cols=27  Identities=7%  Similarity=-0.060  Sum_probs=15.9

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         67 SLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        67 ~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ..|.-....|++++|+.+|..+++.+.
T Consensus        20 ~~Ave~D~~g~y~eAl~~Y~~Aie~l~   46 (93)
T 1wfd_A           20 KRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            334444555666666666666666544

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.97  E-value=3  Score=21.46  Aligned_cols=15  Identities=20%  Similarity=0.166  Sum_probs=7.6

Q ss_pred             cHHHHHHHHHHHHHH
Q psy10736         37 EYQAASEHYKRTLVL   51 (104)
Q Consensus        37 ~~~~A~~~~~~al~~   51 (104)
                      .+++|..+..++|.+
T Consensus        18 ~h~~AF~~Is~AL~~   32 (116)
T 2dl1_A           18 AYKKAFLFVNKGLNT   32 (116)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            345555555555544

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.89  E-value=5.9  Score=24.71  Aligned_cols=69  Identities=13%  Similarity=-0.060  Sum_probs=47.3

Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         30 NSHIFLGEYQAASEHYKRTLVLAQDLG-----------DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        30 ~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      .+.....+.+++++++.+......+..           .......+...++..|...|+..+|..+++++-......++.
T Consensus        84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~  163 (393)
T 4b4t_O           84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI  163 (393)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence            445566788888888876544332210           112235667788888999999999999999998877766543

>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=83.70  E-value=2.7  Score=20.59  Aligned_cols=13  Identities=8%  Similarity=0.171  Sum_probs=5.0

Q ss_pred             CChhHHHHHHHHH
Q psy10736         76 RDYPTAIDYHLRH   88 (104)
Q Consensus        76 g~~~~A~~~~~~a   88 (104)
                      |+.++|+++|++.
T Consensus        33 G~k~~A~~~YkkG   45 (89)
T 3eab_A           33 GQKEQAVEWYKKG   45 (89)
T ss_dssp             SSGGGSHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            3333333333333

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=82.74  E-value=5.6  Score=23.56  Aligned_cols=77  Identities=22%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQDLG--DRAVEAQACYSLGNTYTLLRDYPTAIDY   84 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~   84 (104)
                      +....+..+.-.|..|...-+          .+.|...|++|.+++....  +|..++.+++.-...|.-.+++++|...
T Consensus       141 ~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~l  220 (260)
T 2npm_A          141 SPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDM  220 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             chHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444444666665432          2578889999999982222  3445555555544445568999999999


Q ss_pred             HHHHHHHHH
Q psy10736         85 HLRHLIIAQ   93 (104)
Q Consensus        85 ~~~a~~~~~   93 (104)
                      .++++.-+-
T Consensus       221 Ak~Afd~Ai  229 (260)
T 2npm_A          221 AKEAFEMAI  229 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.58  E-value=4.8  Score=22.70  Aligned_cols=67  Identities=18%  Similarity=0.011  Sum_probs=47.2

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHH--HHH----------hCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVL--AQD----------LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+.-+.++....++..|+..++..+.-  -+.          .-++...-..+.-+|.++...|+.++|+.++..+...
T Consensus        65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A           65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            344566888899999999999887621  000          0111222345678899999999999999999888653

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=82.13  E-value=1.8  Score=21.45  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=11.8

Q ss_pred             HHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         68 LGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        68 l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      +|..+...|+++.|+.+|-+|+.++
T Consensus        26 lGE~L~~~g~~e~av~Hf~nAl~Vc   50 (95)
T 1om2_A           26 LGEELLAQGDYEKGVDHLTNAIAVC   50 (95)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHc
Confidence            3444444455555555444444443

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.07  E-value=6.2  Score=22.96  Aligned_cols=51  Identities=16%  Similarity=-0.057  Sum_probs=34.9

Q ss_pred             CchhHHHHHHHH-h-CCHHHHHHHHHHhHHHHHH-hccHHHHHHHHHHHHHHHH
Q psy10736          3 VQPNDRLKIARE-F-GDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus         3 ~~~~~a~~~~~~-~-~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~   53 (104)
                      +.|++|.+++.. + +.+|.......|.+..|+. .+++++|....+++.+-+-
T Consensus       151 ~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai  204 (234)
T 2br9_A          151 VAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI  204 (234)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            357888888864 3 3345555555555555554 7999999999999877543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=81.01  E-value=0.97  Score=21.26  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=15.7

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         67 SLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        67 ~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+|..+...|+++++..++-+|+..+
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc   47 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVC   47 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence            45555666666666666666665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=80.77  E-value=11  Score=25.51  Aligned_cols=68  Identities=4%  Similarity=-0.119  Sum_probs=44.9

Q ss_pred             HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--------CC--------hHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736         24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--------GD--------RAVEAQACYSLGNTYTLLRDYPTAIDYHLR   87 (104)
Q Consensus        24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   87 (104)
                      .+...+......|+++.|...|++++......        ..        ......++...+......|+.+.|...|.+
T Consensus       380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~  459 (679)
T 4e6h_A          380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK  459 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34556677778899999999999999864211        10        001223444555556667788888888888


Q ss_pred             HHHH
Q psy10736         88 HLII   91 (104)
Q Consensus        88 a~~~   91 (104)
                      |++.
T Consensus       460 A~~~  463 (679)
T 4e6h_A          460 CRRL  463 (679)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=80.69  E-value=2  Score=27.75  Aligned_cols=37  Identities=11%  Similarity=0.019  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736         63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV   99 (104)
Q Consensus        63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   99 (104)
                      .++..+|++......+..|..+|.+|..+....|.+.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~  189 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPY  189 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchH
Confidence            4677899999999999999999999999988887764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.33  E-value=13  Score=26.17  Aligned_cols=68  Identities=12%  Similarity=0.010  Sum_probs=50.4

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHH-----------------HHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLA-----------------QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH   88 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   88 (104)
                      +-+|.++...|++++|..+|+++-...                 ...........-|..+..++...+.++-++++.+.|
T Consensus       844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA  923 (950)
T 4gq2_M          844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  923 (950)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            678999999999999999998754211                 111111223346678888889999999999999999


Q ss_pred             HHHHH
Q psy10736         89 LIIAQ   93 (104)
Q Consensus        89 ~~~~~   93 (104)
                      +....
T Consensus       924 I~~~~  928 (950)
T 4gq2_M          924 DASKE  928 (950)
T ss_dssp             HHTCC
T ss_pred             Hhhcc
Confidence            97653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 7e-05
 Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 2/78 (2%)

Query: 17  DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
           ++AA+          +    E   A + + +     +  G+              +    
Sbjct: 34  EEAAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91

Query: 77  DYPTAIDYHLRHLIIAQQ 94
           +   A+D     + I   
Sbjct: 92  NSVNAVDSLENAIQIFTH 109

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
               +LG+   +  +   A  +Y+    L    G           L    +   D+ T I
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTI 206

Query: 83  DYHLRHLII 91
            Y+ R + +
Sbjct: 207 FYYCRSIAV 215

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 23  RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
             + NL   +   G    A + Y+R + L            A  +L N          A 
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAE 291

Query: 83  DYHLRHL 89
           D +   L
Sbjct: 292 DCYNTAL 298

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.55
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.42
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.28
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.23
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.18
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.17
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.15
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.14
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.02
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.0
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.99
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.95
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.92
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.76
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.71
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.64
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.51
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.5
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.49
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.94
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.88
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.7
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.7
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	95.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.35
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	95.01
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	94.84
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	94.24
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.13
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	92.68
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	92.2
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	92.15
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	90.58
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.8
d2cwya1	94	Hypothetical protein TTHA0068 {Thermus thermophilu	86.55
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	80.08

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.58  E-value=1.1e-13  Score=74.01  Aligned_cols=95  Identities=12%  Similarity=0.081  Sum_probs=79.1

Q ss_pred             chhHHHHHHHHhCC------HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREFGD------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----RAVEAQACYSLGNTY   72 (104)
Q Consensus         4 ~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~   72 (104)
                      .|.+++++....++      .+..+.++.++|.++..+|++++|+..+++++.+.++...     ......+++++|.+|
T Consensus        31 ~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~  110 (156)
T d2hr2a1          31 NCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL  110 (156)
T ss_dssp             HHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHH
Confidence            46667776665543      3456789999999999999999999999999999887644     234566899999999


Q ss_pred             HHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         73 TLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        73 ~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      ..+|++++|+.+|++++++.++.++.
T Consensus       111 ~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1         111 DGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhch
Confidence            99999999999999999999877554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.9e-13  Score=79.40  Aligned_cols=98  Identities=14%  Similarity=0.027  Sum_probs=89.9

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL-LRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A   81 (104)
                      .+|.+++++....++.+..+.++.++|.+|...|++++|++++++++.+....++......++.++|.++.. .|++++|
T Consensus        58 ~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  137 (290)
T d1qqea_          58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA  137 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHH
Confidence            468889999999999999999999999999999999999999999999999999999999999999999865 6999999


Q ss_pred             HHHHHHHHHHHHHhcchhh
Q psy10736         82 IDYHLRHLIIAQQLMDRVG  100 (104)
Q Consensus        82 ~~~~~~a~~~~~~~~~~~~  100 (104)
                      +.+|++++++.+..+++..
T Consensus       138 ~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_         138 IDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCchhh
Confidence            9999999999888776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-12  Score=64.03  Aligned_cols=71  Identities=11%  Similarity=0.006  Sum_probs=61.9

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .-++.+|.++...|++++|+.++++|+.+...... ....+.++.++|.++...|++++|+.+|++++++-+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            44689999999999999999999999998876543 334578999999999999999999999999998743

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-12  Score=70.43  Aligned_cols=82  Identities=21%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      -|++|++.+....++.  ..+++++|.+|..+|++++|+++|++++++-      +..+.++.++|.++..+|++++|+.
T Consensus        20 d~~~Al~~~~~i~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------p~~~~a~~~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          20 DWKGALDAFSAVQDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             CHHHHHHHHHTSSSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------hhhhhhHHHHHHHHHhhccHHHHHH
Confidence            4778888887765543  4578999999999999999999999999862      2235789999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .|++++...+
T Consensus        92 ~~~kAl~~~~  101 (192)
T d1hh8a_          92 DLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHhCc
Confidence            9999997543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=3.7e-11  Score=69.62  Aligned_cols=92  Identities=14%  Similarity=0.057  Sum_probs=83.7

Q ss_pred             CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHH-hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736          3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA   81 (104)
Q Consensus         3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   81 (104)
                      .++++++.+....++......++..+|.++.. .|++++|++++++++++....+++.....++.++|.++...|++++|
T Consensus        98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_          98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence            35788899999999999999999999998865 69999999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy10736         82 IDYHLRHLIIAQQ   94 (104)
Q Consensus        82 ~~~~~~a~~~~~~   94 (104)
                      +..|++++.....
T Consensus       178 ~~~~~~~~~~~~~  190 (290)
T d1qqea_         178 SDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.7e-11  Score=62.60  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      |++|+..+.+. ...|....++.++|.++..+|++++|++.+++++++-+.... ....+.++..+|.++...+++++|+
T Consensus        20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~   99 (128)
T d1elra_          20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI   99 (128)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            45666544332 112234668999999999999999999999999999887655 4556789999999999999999999


Q ss_pred             HHHHHHHHH
Q psy10736         83 DYHLRHLII   91 (104)
Q Consensus        83 ~~~~~a~~~   91 (104)
                      .+|++++..
T Consensus       100 ~~~~kal~~  108 (128)
T d1elra_         100 HFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999865

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=3e-12  Score=70.21  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -|++|+..++.. .-.|....++.++|.+|...|++++|+.++.+++.+-      +.-..++.++|.+|..+|++++|+
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~------p~~~~a~~~lg~~~~~l~~~~~A~   92 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSVKAHFFLGQCQLEMESYDEAI   92 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            356677666432 2223456789999999999999999999999998762      223467899999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy10736         83 DYHLRHLIIAQQLM   96 (104)
Q Consensus        83 ~~~~~a~~~~~~~~   96 (104)
                      ..|++++++.+...
T Consensus        93 ~~~~~al~l~p~~~  106 (201)
T d2c2la1          93 ANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCcccH
Confidence            99999999876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.7e-11  Score=61.67  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      +..+.++|+.+...|++++|+.+|++++++..      ....++.++|.+|..+|++++|+..+++++++.+....
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            45678999999999999999999999998722      12468999999999999999999999999998876644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.25  E-value=1.7e-10  Score=61.36  Aligned_cols=77  Identities=17%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             HHHHHHHh--HHHHHHhccHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNL--GNSHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l--~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .+.++..+  |..+...|+|++|+..|++++++.+..++      ....+.++.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            44555555  77888889999999999999999887654      23456789999999999999999999999999998


Q ss_pred             HHhcc
Q psy10736         93 QQLMD   97 (104)
Q Consensus        93 ~~~~~   97 (104)
                      .+...
T Consensus        86 ~~~~~   90 (156)
T d2hr2a1          86 NRRGE   90 (156)
T ss_dssp             HHHCC
T ss_pred             ccccc
Confidence            76544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.3e-11  Score=63.97  Aligned_cols=68  Identities=21%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .....++.++|.+|...|++++|+.++++++.+-      +.-+.++.++|.++..+|++++|+.+|++++++.
T Consensus        59 ~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          59 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4456778899999999999999999999999872      2235789999999999999999999999999874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-11  Score=62.41  Aligned_cols=84  Identities=18%  Similarity=0.058  Sum_probs=66.4

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      -+++|+..+... ...|....++.++|.++...|++++|+..+.+++.+-.      .-..++.++|.++..+|++++|+
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------DWGKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc------chhhHHHHHHHHHHHccCHHHHH
Confidence            356666655543 22334466899999999999999999999999987722      22367899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQ   93 (104)
Q Consensus        83 ~~~~~a~~~~~   93 (104)
                      ..|++++++.+
T Consensus        92 ~~~~~a~~~~p  102 (117)
T d1elwa_          92 RTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHTTCT
T ss_pred             HHHHHHHHhCC
Confidence            99999997643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=1.6e-10  Score=61.32  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....++.++|.+|..+|++++|+.++++++.+-      +.-+.+++++|.++..+|++++|+.+|++++++.+
T Consensus        65 ~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          65 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhhHHHHHHHhcccchhhhhhhcccccc------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            346688999999999999999999999998762      22247899999999999999999999999998854

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.18  E-value=1.4e-10  Score=62.44  Aligned_cols=70  Identities=21%  Similarity=0.237  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      .......++.++|.++..+|++++|+.++++++.+-      +.-..++.++|.++...|++++|+..|++++.+-
T Consensus        59 ~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          59 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             cchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344567789999999999999999999999998762      1234789999999999999999999999999764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=8.3e-10  Score=63.95  Aligned_cols=80  Identities=18%  Similarity=0.054  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   98 (104)
                      +.....+.++|.++...|++++|+.++++++...+..++.+..+.++..+|.+|...|++++|++.+++++++.++.+..
T Consensus       248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~  327 (366)
T d1hz4a_         248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI  327 (366)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcH
Confidence            44556778899999999999999999999999999999999999999999999999999999999999999998877653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.8e-10  Score=65.11  Aligned_cols=72  Identities=14%  Similarity=0.065  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ..+..+.+++++|.+|...|++++|+.+|++++.+-.      ..+.++.++|.++...|++++|+..|++++++.+.
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC------CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            4667888999999999999999999999999987621      12467888999999999999999999999877543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=1.5e-10  Score=62.27  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+....++.++|.++...|++++|+..+.+++++-      +....++.++|.++..+|++++|+..|++++++-+
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            45677889999999999999999999999998762      23357899999999999999999999999998743

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.1e-11  Score=62.51  Aligned_cols=82  Identities=11%  Similarity=0.025  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      |++|+..+++. .-.+....++.++|.++...|++++|+..+++++++-      +....++.++|.++...|++++|+.
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------p~~~~a~~~~g~~~~~~g~~~eA~~   99 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------KKYIKGYYRRAASNMALGKFRAALR   99 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc------ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            45555544432 2224457788999999999999999999999998772      2234678999999999999999999


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      .+++++.+.
T Consensus       100 ~~~~a~~~~  108 (159)
T d1a17a_         100 DYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHcC
Confidence            999999764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.9e-09  Score=61.04  Aligned_cols=94  Identities=14%  Similarity=0.027  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHh------CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736          5 PNDRLKIAREF------GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY   78 (104)
Q Consensus         5 ~~~a~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   78 (104)
                      +++|+.++++.      ++......++..+|.++...|++++|+.++++++.+....++......++.+++.++...|++
T Consensus        28 ~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (366)
T d1hz4a_          28 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL  107 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            45566655432      355667788999999999999999999999999999999999998999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcch
Q psy10736         79 PTAIDYHLRHLIIAQQLMDR   98 (104)
Q Consensus        79 ~~A~~~~~~a~~~~~~~~~~   98 (104)
                      ..+...+.+++.+......+
T Consensus       108 ~~a~~~~~~al~~~~~~~~~  127 (366)
T d1hz4a_         108 QTAWETQEKAFQLINEQHLE  127 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhHhcccc
Confidence            99999999999988776543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2e-10  Score=66.79  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..++.. ...+....++..+|.++...|++++|++++++++++-      +....++.++|.+|...|++++|+.
T Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh------hccHHHHHHHHHHHHHCCCHHHHHH
Confidence            44555544432 1112345678899999999999999999999988762      1124678999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy10736         84 YHLRHLIIAQQLMD   97 (104)
Q Consensus        84 ~~~~a~~~~~~~~~   97 (104)
                      +|++++++.+....
T Consensus       262 ~~~~al~l~p~~~~  275 (323)
T d1fcha_         262 HFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHhCCcChh
Confidence            99999998776544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.07  E-value=1.7e-10  Score=58.21  Aligned_cols=63  Identities=14%  Similarity=-0.003  Sum_probs=45.9

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ...++..+|.++...|++++|+.++++++++-      +.-..++.++|.+|...|++++|++.+++.+
T Consensus        49 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          49 REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhHHHhhcccccccccc------cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            35677778888888888888888888877662      1223567778888888888888888877764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.3e-10  Score=57.67  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             HHHHHHHHhHHHHHHh---ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFL---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....+++++|.++...   +++++|+..+++++..    ...+....+++++|.+|...|++++|+.+|++++++-+
T Consensus        31 ~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          31 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence            3456788999998764   4566788888776642    22344567899999999999999999999999998743

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.6e-10  Score=60.93  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+...|+.+...|++++|+.+|.+++.+-      +..+.++.++|.+|...|++++|+.+|++++++-
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRN------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            446788999999999999999999999872      1235789999999999999999999999998763

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.6e-09  Score=56.73  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .+..+...|+.+...|++++|+.+|++++.+.      +....++.++|.++...|++++|+..|++++++-+
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p   75 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK   75 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccc------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc
Confidence            45567788999999999999999999999872      22357889999999999999999999999998743

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.5e-09  Score=52.88  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      +...|+.+...|++++|+..|.+++.+.      +....++.++|.++...|++++|+..+++++++.+.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC------CcchhhhhcccccccccccccccchhhhhHHHhccc
Confidence            5678999999999999999999998762      223468999999999999999999999999987543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=8.4e-09  Score=55.41  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+..+...|+.+...|++++|+..|++++.+......         ......++.++|.+|...|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4667789999999999999999999999998654322         1233567889999999999999999999999987


Q ss_pred             H
Q psy10736         92 A   92 (104)
Q Consensus        92 ~   92 (104)
                      -
T Consensus        92 ~   92 (170)
T d1p5qa1          92 D   92 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.5e-09  Score=61.23  Aligned_cols=66  Identities=20%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ...++.++|.++...|++++|+..+++++.+...      ...++.++|.++...|++++|+..+++++++.
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            4667899999999999999999999999987322      23578999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.91  E-value=6.4e-09  Score=52.27  Aligned_cols=64  Identities=17%  Similarity=0.029  Sum_probs=55.3

Q ss_pred             HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      ...+|..+...|++++|+..+++++....      ....++..+|.++...|++++|+.++++++++-+.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccc------ccchhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence            46789999999999999999999987632      23578999999999999999999999999987543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.89  E-value=2.2e-08  Score=53.58  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=60.5

Q ss_pred             HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC---------ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---------DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .+..+...|+.+...|++.+|+..|.+++.+.....         .......++.++|.+|..+|++.+|+.++++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            466788999999999999999999999998764321         12334667889999999999999999999999987


Q ss_pred             HH
Q psy10736         92 AQ   93 (104)
Q Consensus        92 ~~   93 (104)
                      -+
T Consensus        94 ~p   95 (168)
T d1kt1a1          94 DS   95 (168)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.76  E-value=6.8e-08  Score=50.93  Aligned_cols=73  Identities=25%  Similarity=0.292  Sum_probs=59.3

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD----------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL   89 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   89 (104)
                      ..+..+...|+.+...|++.+|+..|.+++.+......          ......++.++|.+|..+|++++|+.++++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            34556778899999999999999999999987643321          11235678899999999999999999999999


Q ss_pred             HHH
Q psy10736         90 IIA   92 (104)
Q Consensus        90 ~~~   92 (104)
                      ++-
T Consensus        95 ~~~   97 (153)
T d2fbna1          95 KID   97 (153)
T ss_dssp             HHS
T ss_pred             ccc
Confidence            764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=1.3e-08  Score=53.37  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhc----------cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLG----------EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY   72 (104)
Q Consensus         4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   72 (104)
                      .|++|+..++.. ...|....++.++|.++...+          .+++|+..+++++++      .+.-..+++++|.+|
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cchhhHHHhhHHHHH
Confidence            356777666543 223455678889999887654          457788888888765      122346789999999


Q ss_pred             HHhCC-----------hhHHHHHHHHHHHHH
Q psy10736         73 TLLRD-----------YPTAIDYHLRHLIIA   92 (104)
Q Consensus        73 ~~~g~-----------~~~A~~~~~~a~~~~   92 (104)
                      ..+|+           +.+|+++|++++++-
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            87754           577777787777664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=7.4e-09  Score=56.68  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD----------RAVEAQACYSLGNTYT   73 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~   73 (104)
                      +++|++.+++. ...+....++.++|.++..+|++++|+..+++++...+....          ......+++++|.++.
T Consensus        52 ~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~  131 (192)
T d1hh8a_          52 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA  131 (192)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHH
Confidence            44555444332 222345778999999999999999999999999876433211          1122467889999999


Q ss_pred             HhCChhHHHHHHHHHHHHH
Q psy10736         74 LLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        74 ~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..|++++|++.+++++.+.
T Consensus       132 ~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_         132 KKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HTTCHHHHHHHHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHHHhcC
Confidence            9999999999999988653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4e-08  Score=57.34  Aligned_cols=82  Identities=13%  Similarity=0.074  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +++|+..+++.- ..|....++..+|.++...|++++|+.+++++++...      ....++..+|.++...|++++|+.
T Consensus        15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~a~~~l~~~~~~~g~~~~A~~   88 (388)
T d1w3ba_          15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP------LLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHhhhhcccccccc
Confidence            566666655431 1123356788999999999999999999999987621      224678999999999999999999


Q ss_pred             HHHHHHHHH
Q psy10736         84 YHLRHLIIA   92 (104)
Q Consensus        84 ~~~~a~~~~   92 (104)
                      .+..+....
T Consensus        89 ~~~~~~~~~   97 (388)
T d1w3ba_          89 HYRHALRLK   97 (388)
T ss_dssp             HHHHHHHHC
T ss_pred             ccccccccc
Confidence            999888654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.67  E-value=1.6e-07  Score=50.04  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=57.9

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG----------DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      +..+...|..+...|++++|+..|.+++.+.....          ..+..+.++.++|.++...|++++|+..+++++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            34467789999999999999999999998754221          12345678899999999999999999999999976


Q ss_pred             H
Q psy10736         92 A   92 (104)
Q Consensus        92 ~   92 (104)
                      -
T Consensus       107 ~  107 (169)
T d1ihga1         107 D  107 (169)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.8e-08  Score=56.14  Aligned_cols=83  Identities=14%  Similarity=0.024  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736          5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus         5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      +.+|+..+++. ...|....++..+|.++...|++++|+.++.+++++..      .....+..+|.++...|++++|++
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~  108 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP------DNQTALMALAVSFTNESLQRQACE  108 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc------cccccccccccccccccccccccc
Confidence            55666665543 33344567899999999999999999999999987632      123678889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      .+++++.+.+
T Consensus       109 ~~~~~~~~~~  118 (323)
T d1fcha_         109 ILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHTST
T ss_pred             chhhHHHhcc
Confidence            9999886544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.9e-09  Score=60.39  Aligned_cols=66  Identities=18%  Similarity=0.122  Sum_probs=48.6

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ...+..++.++...|++++|+.++++++++.      +....++.++|.++...|++++|+.+|++++++.+
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3455666777777777777777777766542      12246788999999999999999999999987643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.3e-08  Score=59.24  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=56.7

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.++|.++...+++++|+.+|.+++.+....      +.+++++|.++...|+..+|+.+|.+++.+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN------GQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            4678999999999999999999999999884333      467899999999999999999999999854

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.3e-08  Score=58.47  Aligned_cols=64  Identities=11%  Similarity=-0.054  Sum_probs=36.0

Q ss_pred             HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.++|.++...|++++|+..+.+++.+-      +.-..++.++|.++...|++++|+.++++++++
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhh------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4455555555555555555555555555431      111245566666666666666666666666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.6e-07  Score=54.86  Aligned_cols=85  Identities=12%  Similarity=-0.017  Sum_probs=63.6

Q ss_pred             CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhc-cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736          3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT   80 (104)
Q Consensus         3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   80 (104)
                      +.+++|+..+... .-.|.-..+++++|.++...| ++++|+.++++++.+-      +.-..++.++|.++...|++++
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~------p~~~~a~~~~~~~~~~l~~~~e  130 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------PKNYQVWHHRRVLVEWLRDPSQ  130 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTT
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH------HhhhhHHHHHhHHHHhhccHHH
Confidence            3456666655433 223344567889999988876 5899999999987762      2235788999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy10736         81 AIDYHLRHLIIAQ   93 (104)
Q Consensus        81 A~~~~~~a~~~~~   93 (104)
                      |+.++++++++-.
T Consensus       131 Al~~~~kal~~dp  143 (315)
T d2h6fa1         131 ELEFIADILNQDA  143 (315)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHhhhhhhhh
Confidence            9999999998643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.1e-06  Score=47.42  Aligned_cols=69  Identities=13%  Similarity=0.009  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      +....++.+++.++...|++++|+.++++++.+-.      .--.++..++.++...|++.+|+..|+++.....
T Consensus        64 ~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          64 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999987621      2236789999999999999999999999987654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.6e-07  Score=45.67  Aligned_cols=65  Identities=15%  Similarity=-0.008  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10736          4 QPNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL   74 (104)
Q Consensus         4 ~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   74 (104)
                      ++++|+.+..... .....+.++.++|.++...|++++|+.++++++++-      +....++.+++.+...
T Consensus        27 ~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          27 WMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PEHQRANGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHH
Confidence            3455555444332 223457889999999999999999999999999872      2223567777665443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.9e-06  Score=40.96  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHh---CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREF---GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         5 ~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +++|+.+++..   +..+....+++++|.+|...|++++|+.++++++++
T Consensus        52 ~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          52 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            45688877765   345666789999999999999999999999999987

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.2e-06  Score=54.06  Aligned_cols=73  Identities=12%  Similarity=-0.017  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      .+.....+.++|..+...|++++|+..+.+++....        ..++.++|.++..+|++++|+.+|++++++.+..+.
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~  187 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ  187 (497)
T ss_dssp             ---------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH
Confidence            344556677888888888888888888888776532        357889999999999999999999999998766655


Q ss_pred             h
Q psy10736         98 R   98 (104)
Q Consensus        98 ~   98 (104)
                      .
T Consensus       188 ~  188 (497)
T d1ya0a1         188 P  188 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=4.3e-05  Score=41.03  Aligned_cols=74  Identities=14%  Similarity=0.006  Sum_probs=59.4

Q ss_pred             HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-----CC-h----------HHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736         20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-----GD-R----------AVEAQACYSLGNTYTLLRDYPTAID   83 (104)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~-~----------~~~~~~~~~l~~~~~~~g~~~~A~~   83 (104)
                      .....+...|......|++++|++.|.+++.+.+..     .+ .          .....++.+++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            456678889999999999999999999999875421     11 1          1234678899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10736         84 YHLRHLIIAQ   93 (104)
Q Consensus        84 ~~~~a~~~~~   93 (104)
                      ++++++.+..
T Consensus        89 ~~~~al~~~P   98 (179)
T d2ff4a2          89 ELEALTFEHP   98 (179)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHhCC
Confidence            9999997643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.88  E-value=1.4e-05  Score=41.47  Aligned_cols=58  Identities=14%  Similarity=0.082  Sum_probs=43.2

Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh----------CChhHHHHHHHHHHHHHH
Q psy10736         30 NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----------RDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        30 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~   93 (104)
                      ..+...+.+++|+..+++++++-      +.-+.++.++|.++...          +.+++|+..|++++++-+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P   72 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSN------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   72 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHccHHHHHHHHHHHHhhC------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            34567788999999999998772      22346788888888754          445778888888887743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.00029  Score=35.58  Aligned_cols=66  Identities=12%  Similarity=0.028  Sum_probs=48.0

Q ss_pred             HHHHHHhHHHHHHh---ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIFL---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        22 ~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+-.+.|.+....   .+..+++..+++.+.   .  ++...-.+++++|..|...|++++|..++++++++-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~---~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---H--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh---c--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34555666666544   456777777776543   2  233344789999999999999999999999999764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=7.5e-05  Score=37.94  Aligned_cols=78  Identities=13%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hC
Q psy10736          5 PNDRLKIAREFGDKAAERRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LR   76 (104)
Q Consensus         5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g   76 (104)
                      .++++.+++..-+ .....++..+|..|..    ..++++|+++++++.+.    +++    .++.++|.+|..    ..
T Consensus        39 ~~~a~~~~~~aa~-~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~----g~~----~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          39 KQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQ----DGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHhhhhc-ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc----Ccc----hHHHHHHHHHHcCCccCC
Confidence            3455555544311 1224556778888765    34789999999887543    433    467889998876    45


Q ss_pred             ChhHHHHHHHHHHHH
Q psy10736         77 DYPTAIDYHLRHLII   91 (104)
Q Consensus        77 ~~~~A~~~~~~a~~~   91 (104)
                      ++.+|..+|+++.++
T Consensus       110 d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         110 NEKQAVKTFEKACRL  124 (133)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC
Confidence            789999999988754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.75  E-value=0.00012  Score=40.89  Aligned_cols=60  Identities=15%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLI   90 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~   90 (104)
                      ..+.++|..+...+++++|+.+++++.+    .++.    .++.++|.+|..    ..++..|..+++.+..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~----~g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACD----LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCH----HHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            4678899999999999999999999854    3443    467888998887    5577888888777653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.72  E-value=4.7e-05  Score=43.35  Aligned_cols=56  Identities=14%  Similarity=0.091  Sum_probs=39.3

Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         32 HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        32 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      ....|++++|+..+++++..      .+.-..++.+++.++...|++++|+..+++++++..
T Consensus         6 aL~~G~l~eAl~~l~~al~~------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P   61 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   61 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            34567888888888877654      222245677888888888888888888888876643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=3e-05  Score=44.97  Aligned_cols=61  Identities=7%  Similarity=-0.122  Sum_probs=49.3

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ   93 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   93 (104)
                      .++..+...+++++|+..+.+++..      .+....++..+|.++...|++++|+.+|++++++-+
T Consensus       247 ~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         247 LSVEKSTVLQSELESCKELQELEPE------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhh------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            5677777788888888887776644      334568899999999999999999999999998743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=7.6e-05  Score=37.75  Aligned_cols=47  Identities=19%  Similarity=0.143  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736          5 PNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus         5 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      .++++.+.+..  .++.....+++++|..|...|++++|..++++++++
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45667666554  244456789999999999999999999999999887

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.63  E-value=0.00015  Score=40.50  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=49.3

Q ss_pred             HHHHHHhHHHHHH----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q psy10736         22 RRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII   91 (104)
Q Consensus        22 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~   91 (104)
                      ..++.++|..+..    ..++++|+.+|.++.+.    ++    ..++++||.+|..    ..++.+|.++|+++.+.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----g~----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc----cC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            4567888888877    56899999999998553    44    3577899999975    34899999999999865

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.33  E-value=0.00082  Score=38.11  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh----------------------------
Q psy10736          5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL----------------------------   55 (104)
Q Consensus         5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------   55 (104)
                      +++|+..++ .+...|....+...++.++...|++++|+..+++++++....                            
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~   91 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAK   91 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEE
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhh
Confidence            456665444 344556667889999999999999999999999988752110                            


Q ss_pred             --CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736         56 --GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM   96 (104)
Q Consensus        56 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   96 (104)
                        ++ +.....+...+..+...|++++|...++++.++....+
T Consensus        92 ~~~~-p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          92 VLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             CCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             cccC-chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence              11 12234556778889999999999999999988765543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.0028  Score=36.39  Aligned_cols=64  Identities=11%  Similarity=-0.127  Sum_probs=46.5

Q ss_pred             hHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736          6 NDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL   75 (104)
Q Consensus         6 ~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   75 (104)
                      .+++..+ +.....+....++..+|.++...|++++|++++++++++     +| .....+..++..+...
T Consensus       259 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l-----dP-~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV-----DP-MRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH-----CG-GGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----Cc-ccHHHHHHHHHHHhHh
Confidence            3444433 344566778899999999999999999999999999887     23 2344566666666543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.024  Score=26.09  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL   51 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   51 (104)
                      +...+..+..-+.-+...|.|++|+++.++|...
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445555666666666667777777777766554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.58  E-value=0.026  Score=28.07  Aligned_cols=73  Identities=14%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHh---CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCC
Q psy10736          5 PNDRLKIAREF---GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRD   77 (104)
Q Consensus         5 ~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~   77 (104)
                      +++|+.++++.   ++.    .++.+++.  ....+.++|+.+++++.+.    ++    ..++..+|.+|..    ..+
T Consensus         9 ~~~A~~~~~kaa~~g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~~g~~~~~d   74 (133)
T d1klxa_           9 LKKAIQYYVKACELNEM----FGCLSLVS--NSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKD   74 (133)
T ss_dssp             HHHHHHHHHHHHHTTCT----THHHHHHT--CTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCC
T ss_pred             HHHHHHHHHHHHHCCCh----hhhhhhcc--ccccCHHHHHHHHhhhhcc----cc----hhhhhhHHHhhhhccccchh
Confidence            45666665543   332    23344432  3446889999999887543    44    3567889998876    457


Q ss_pred             hhHHHHHHHHHHHH
Q psy10736         78 YPTAIDYHLRHLII   91 (104)
Q Consensus        78 ~~~A~~~~~~a~~~   91 (104)
                      +.+|.++|+++.+.
T Consensus        75 ~~~A~~~~~~aa~~   88 (133)
T d1klxa_          75 LRKAAQYYSKACGL   88 (133)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHhhhhcc
Confidence            89999999998753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.38  E-value=0.056  Score=30.57  Aligned_cols=51  Identities=12%  Similarity=-0.027  Sum_probs=28.6

Q ss_pred             hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         35 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        35 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      .|+.+.|...+++++....   +.   ...+...+......|+++.|...|++++..
T Consensus       182 ~~~~~~a~~i~e~~l~~~p---~~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYG---DI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHHHHHhhh---hh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3555555555555554321   11   133445556666777777777777777653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.031  Score=31.64  Aligned_cols=64  Identities=8%  Similarity=-0.084  Sum_probs=35.6

Q ss_pred             HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736         23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII   91 (104)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   91 (104)
                      ..+...+......|+++.|...+++++....  .+   ...++...+......|+++.|...|+++++.
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~--~~---~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~  163 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIED--ID---PTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--SC---THHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhc--CC---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3455556667777777777777777664311  01   1123344445555556666666666665543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.056  Score=24.84  Aligned_cols=38  Identities=13%  Similarity=0.050  Sum_probs=31.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736         57 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ   94 (104)
Q Consensus        57 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   94 (104)
                      .|...+..+...+.-+...|.|++|+++.+++......
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            36677788888999999999999999999999876554

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=94.84  E-value=0.13  Score=28.23  Aligned_cols=70  Identities=3%  Similarity=-0.200  Sum_probs=49.4

Q ss_pred             HHHHHHHhHHHHHH-----hccHHHHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736         21 ERRANSNLGNSHIF-----LGEYQAASEHYKRTLVLAQDL---GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI   90 (104)
Q Consensus        21 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   90 (104)
                      .+..+.-.|..|+.     .|.-+.|...|++|.+++...   .+|..++.+++.-...|.-.++.++|.+..+.|.+
T Consensus       117 kVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~  194 (220)
T d2o8pa1         117 KFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK  194 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33333344666554     367799999999999998753   23555566666666667778999999999888843

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.24  E-value=0.19  Score=27.67  Aligned_cols=78  Identities=12%  Similarity=0.040  Sum_probs=57.1

Q ss_pred             CCHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-h--CChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-L--GDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++...+..+.-.|..|...-+          .+.|.+.|++|+++++. .  -+|..++.+++.-...|.-.|+.++|.
T Consensus       110 ~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~  189 (230)
T d2o02a1         110 SQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKAC  189 (230)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHH
Confidence            4566666666666887776532          35799999999999875 3  245566666666666677789999999


Q ss_pred             HHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQ   93 (104)
Q Consensus        83 ~~~~~a~~~~~   93 (104)
                      ...++++.-+-
T Consensus       190 ~lak~afd~ai  200 (230)
T d2o02a1         190 SLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.13  E-value=0.18  Score=23.68  Aligned_cols=37  Identities=14%  Similarity=0.013  Sum_probs=29.1

Q ss_pred             CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736         17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      .....+..+...|.-+-..|++++|+.+|.++++++.
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3455666777888888888999999999999888753

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=92.68  E-value=0.39  Score=26.36  Aligned_cols=77  Identities=19%  Similarity=0.165  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736         18 KAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQDL-----GDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      ....+..+.-.|..|+..-+          .+.|.+.|++|++++++.     -+|..++.+++.-...|.-.++.++|.
T Consensus        93 ~eskvFY~KmKgDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~  172 (223)
T d3efza1          93 EGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAM  172 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             hHHHHHHHHHhchHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            33344334444776666532          256999999999998862     256666666666555666789999999


Q ss_pred             HHHHHHHHHHHH
Q psy10736         83 DYHLRHLIIAQQ   94 (104)
Q Consensus        83 ~~~~~a~~~~~~   94 (104)
                      ...+++++-+..
T Consensus       173 ~lAk~Afd~~~~  184 (223)
T d3efza1         173 KFANRAIQAAEN  184 (223)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999875543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.20  E-value=0.25  Score=23.13  Aligned_cols=26  Identities=8%  Similarity=-0.042  Sum_probs=12.6

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736         67 SLGNTYTLLRDYPTAIDYHLRHLIIA   92 (104)
Q Consensus        67 ~l~~~~~~~g~~~~A~~~~~~a~~~~   92 (104)
                      ..+.-+...|++++|+.+|.++++++
T Consensus        20 ~~Av~~D~~g~y~eA~~~Y~~aie~l   45 (93)
T d1wfda_          20 KRAVELDAESRYQQALVCYQEGIDML   45 (93)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            33344444455555555555554443

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=92.15  E-value=0.29  Score=25.01  Aligned_cols=69  Identities=10%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC--h---HHHHHHHHHHHHHH-HHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--R---AVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      ..-|..+...|+|-+|-+.++..   ......  +   ...+.+....|... ...|+...|...+.+++...+..+.
T Consensus        21 ~~~Gi~lfN~g~y~eaHE~lEe~---W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~~   95 (145)
T d2ijqa1          21 VVHGVRLYNSGEFHESHDCFEDE---WYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN   95 (145)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH---TTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHH---HHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            44567788889999998888774   433221  1   22344444555553 6899999999999999998876654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=90.58  E-value=0.73  Score=25.41  Aligned_cols=77  Identities=17%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH-h--CChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736         16 GDKAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD-L--GDRAVEAQACYSLGNTYTLLRDYPTAI   82 (104)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~l~~~~~~~g~~~~A~   82 (104)
                      .++...+..+.-.|..|...-+          .+.|.+.|++|.++++. .  -+|..++.+++.-...|.-.|+.++|.
T Consensus       115 ~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~  194 (236)
T d1o9da_         115 ASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRAC  194 (236)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHH
Confidence            4455566566666777766522          46789999999999875 2  245555555555555556679999999


Q ss_pred             HHHHHHHHHH
Q psy10736         83 DYHLRHLIIA   92 (104)
Q Consensus        83 ~~~~~a~~~~   92 (104)
                      ...++++.-+
T Consensus       195 ~lak~afd~a  204 (236)
T d1o9da_         195 NLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888887655

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.62  Score=20.84  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=9.6

Q ss_pred             HHHHHHhccHHHHHHHHHHHHH
Q psy10736         29 GNSHIFLGEYQAASEHYKRTLV   50 (104)
Q Consensus        29 ~~~~~~~~~~~~A~~~~~~al~   50 (104)
                      |.-.-..|++++|+.+|.++++
T Consensus        18 Av~~D~~~~y~~A~~~Y~~a~~   39 (77)
T d1wr0a1          18 AAQEDKAGNYEEALQLYQHAVQ   39 (77)
T ss_dssp             HHHHHHTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            3333344444444444444443

>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein TTHA0068
species: Thermus thermophilus [TaxId: 274]

Probab=86.55  E-value=0.88  Score=21.29  Aligned_cols=66  Identities=8%  Similarity=-0.083  Sum_probs=41.0

Q ss_pred             HhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736         27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR---AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD   97 (104)
Q Consensus        27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   97 (104)
                      .-|..+...|+|-+|-+.++..-.   ...++   ...+.+....|......|+  .+...+.+++...+..+.
T Consensus         6 ~~gi~lfn~g~y~eaHE~lE~~W~---~~~~~er~~~qgLIQ~Ava~~h~~~~~--ga~~ll~ka~~~L~~~~~   74 (94)
T d2cwya1           6 EEVLGLWRAGRYYEVHEVLEPYWL---KATGEERRLLQGVILLAAALHQRRLGR--PGLRNLRKAEARLEGLPC   74 (94)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcCCc
Confidence            346677788999999888887543   33222   2334455555554444443  567778888877766543

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.08  E-value=3.1  Score=22.71  Aligned_cols=51  Identities=12%  Similarity=0.026  Sum_probs=34.9

Q ss_pred             CchhHHHHHHHH-hC-CHHHHHHHHHHhHHH-HHHhccHHHHHHHHHHHHHHHH
Q psy10736          3 VQPNDRLKIARE-FG-DKAAERRANSNLGNS-HIFLGEYQAASEHYKRTLVLAQ   53 (104)
Q Consensus         3 ~~~~~a~~~~~~-~~-~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~   53 (104)
                      ..|++|+.++.. +. ..|.......|.+.. |-..++.++|++..+++.+-+-
T Consensus       147 ~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai  200 (230)
T d2o02a1         147 QAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            357888888865 33 234444555555555 4556899999999999887653