Psyllid ID: psy10739

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
HHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
sllsssrvNIVKEAAWTIsnitagnsrqiDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELrkahkddqlfkrrnidqldeieeenvtvieptcmspikmtvPEMIegmkssnpkMRMIATRSARKMlskerhppidelieagvvpicvfqr
Flexible Loop (DISEMBL)
sllsssrvNIVKEAAwtisnitagnsrQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKmsqkvaaidrkasfknagksfdeMRRKRCEMNVelrkahkddqlfkrrnidqldeieeenvtvieptcmspikMTVPEMIEgmkssnpkMRMIATRSARKmlskerhppidelieagvVPICVFQR
Low Complexity Region (SEG)
SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR
Disordered region (IsUnstruct)
*******VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKV********************************************************************NVTVIEPTCM******************************************ELIEAGVVPICVF**
Disordered Region (DISOPRED)
SL*****VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMR********************************************SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR
Disordered Region (DISEMBL)
********NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR
Disordered Region (DISPRO)
*LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNID*****************MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
P52170	522	Importin subunit alpha-1	N/A	N/A	0.588	0.210	0.427	3e-20
P52292	529	Importin subunit alpha-2	yes	N/A	0.540	0.190	0.437	1e-19
P52171	523	Importin subunit alpha-2	N/A	N/A	0.588	0.210	0.435	1e-19
P52295	522	Importin subunit alpha OS	yes	N/A	0.577	0.206	0.405	4e-19
P52293	529	Importin subunit alpha-2	yes	N/A	0.540	0.190	0.419	1e-18
O35344	521	Importin subunit alpha-3	no	N/A	0.588	0.211	0.394	4e-18
O00505	521	Importin subunit alpha-3	no	N/A	0.588	0.211	0.394	5e-18
O35343	521	Importin subunit alpha-4	no	N/A	0.572	0.205	0.384	2e-16
O00629	521	Importin subunit alpha-4	no	N/A	0.572	0.205	0.376	8e-16
A9QM74	516	Importin subunit alpha-8	no	N/A	0.566	0.205	0.394	9e-16

>sp|P52170|IMA1_XENLA Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 81/117 (69%), Gaps = 7/117 (5%)

Query: 68  AIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEP 127
           A +R   FKN GK   E+RR+R E++VELRKA KD+Q+ KRRN+     + EE +   E 
Sbjct: 7   ADERMRKFKNKGKDTAELRRRRVEVSVELRKAKKDEQILKRRNVC----LPEELILSPEK 62

Query: 128 TCMSPIK---MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
             M  ++   +++ E+++GM S +P+  +  T++ARKMLS+ER+PP++++IEAG++P
Sbjct: 63  NAMQSVQVPPLSLEEIVQGMNSGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIP 119

Essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope.
Xenopus laevis (taxid: 8355)

>sp|P52292|IMA2_HUMAN Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 11/112 (9%)

Query: 75  FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVIEPTC 129
           FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+     D    ++E          
Sbjct: 17  FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENR------NN 70

Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              +  +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 71  QGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIP 122

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

>sp|P52171|IMA2_XENLA Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 80/117 (68%), Gaps = 7/117 (5%)

Query: 68  AIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEP 127
           A +R   FKN GK   E+RR+R E++VELRKA KD+Q+ KRRN+       EE +   E 
Sbjct: 7   ADERMRKFKNKGKDTAELRRRRVEVSVELRKAKKDEQILKRRNVC----FPEELILSPEK 62

Query: 128 TCMSPI---KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
             M  I   ++++ E+++GM S + +  + +T++ARKMLSKER+PP++++IEAG++P
Sbjct: 63  NAMQSIQVPQLSLEEIVQGMNSGDNENELRSTQAARKMLSKERNPPLNDIIEAGLIP 119

It is essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope.

Xenopus laevis (taxid: 8355)

>sp|P52295|IMA_DROME Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 78/116 (67%), Gaps = 8/116 (6%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVT--VIEPT 128
           R+ S+K    +  + R +R E+ +ELRK+ K+DQ+FKRRNI+      +E++T  + E  
Sbjct: 9   RQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIN------DEDLTSPLKELN 62

Query: 129 CMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
             SP++++V E++  M S + + + +  +SARKMLS+ER+PPID +I  G+VPIC+
Sbjct: 63  GQSPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICI 118

It is required for normal cell proliferation and may serve as an adapter molecule to form complexes with other proteins. May act as a tumor suppressor in hematopoietic cells. May play a role in the nuclear import of karyophilic proteins and some of these may be required for the normal transmission and function of proliferative signals in the cells.

Drosophila melanogaster (taxid: 7227)

>sp|P52293|IMA2_MOUSE Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 73/112 (65%), Gaps = 11/112 (9%)

Query: 75  FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVIEPTC 129
           FKN GK   EMRR+R E+NVELRKA KD+Q+ KRRN+     D    ++E          
Sbjct: 17  FKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENR------NN 70

Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 71  QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 122

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 4/114 (3%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 130
           R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct: 11  RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVD----ADF 66

Query: 131 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
               +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V
Sbjct: 67  KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILV 120

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.

Mus musculus (taxid: 10090)

>sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 4/114 (3%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 130
           R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct: 11  RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVD----ADF 66

Query: 131 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
               +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V
Sbjct: 67  KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILV 120

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Recognizes NLSs of influenza A virus nucleoprotein probably through ARM repeats 7-9.

Homo sapiens (taxid: 9606)

>sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 74/117 (63%), Gaps = 10/117 (8%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV---IEP 127
           R  +FKN G+  + MRR+R E+ VELRK  +D+ L KRRN+ Q D  E+ ++     ++ 
Sbjct: 11  RLKNFKNKGRDLETMRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQN 70

Query: 128 TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
           T +  I       ++   S N  +++ A ++ARK+LS +R+PPID+LI++G++PI V
Sbjct: 71  TSLEAI-------VQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILV 120

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 10/117 (8%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV---IEP 127
           R  +FKN G+  + MRR+R E+ VELRK  +D+ L KRRN+   D  E+ ++     ++ 
Sbjct: 11  RLKNFKNKGRDLETMRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQN 70

Query: 128 TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
           T +  I       ++   S N  +++ A ++ARK+LS +R+PPID+LI++G++PI V
Sbjct: 71  TSLEAI-------VQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILV 120

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a nonclassical NLS.

Homo sapiens (taxid: 9606)

>sp|A9QM74|IMA8_HUMAN Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 8/114 (7%)

Query: 70  DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL--DEIEEENVTVIEP 127
           +R+  FK  GK     R++R  +++ELRKA KD+Q  KRRNI     D   E+    +  
Sbjct: 9   ERRRKFKYRGKDVSLRRQQRMAVSLELRKAKKDEQTLKRRNITSFCPDTPSEKTAKGVA- 67

Query: 128 TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
                + +T+ E+I+G+ SS+P +   AT++ARKMLS+E++PP+  +IEAG++P
Sbjct: 68  -----VSLTLGEIIKGVNSSDPVLCFQATQTARKMLSQEKNPPLKLVIEAGLIP 116

Functions in nuclear protein import.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
348511215	523	PREDICTED: importin subunit alpha-2 [Ore	0.593	0.212	0.468	2e-22
5802657	523	pendulin [Oreochromis niloticus]	0.593	0.212	0.468	2e-22
223647006	526	Importin subunit alpha-2 [Salmo salar] g	0.582	0.207	0.477	6e-22
410901792	521	PREDICTED: importin subunit alpha-2-like	0.625	0.224	0.433	1e-21
405950951	617	Importin subunit alpha-1 [Crassostrea gi	0.545	0.165	0.483	1e-21
427785233	516	Putative karyopherin importin alpha [Rhi	0.566	0.205	0.462	2e-21
432871172	522	PREDICTED: importin subunit alpha-2-like	0.593	0.212	0.450	3e-21
345488160	520	PREDICTED: importin subunit alpha-2-like	0.609	0.219	0.470	7e-21
91077394	516	PREDICTED: similar to importin alpha 1a	0.593	0.215	0.491	1e-20
380029460	520	PREDICTED: importin subunit alpha-2-like	0.582	0.209	0.464	2e-20

>gi|348511215|ref|XP_003443140.1| PREDICTED: importin subunit alpha-2 [Oreochromis niloticus]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 76/111 (68%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 130
           R   FKN GK  +E+RR+R E+NVELRKA KDDQ+FKRRN+  + E     +      C 
Sbjct: 7   RLNQFKNKGKDVNELRRRRVEVNVELRKAKKDDQIFKRRNVTAMPEDATSPLQERSQNCQ 66

Query: 131 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              + TV E++ G+ S N + ++ AT++ARK+LS+++HPPID+LI AG++P
Sbjct: 67  GLRQWTVEEIVAGVNSGNSESQLQATQAARKLLSRDKHPPIDQLISAGLIP 117

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|5802657|gb|AAD51751.1| pendulin [Oreochromis niloticus]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 76/111 (68%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 130
           R   FKN GK  +E+RR+R E+NVELRKA+KDDQ+FKRRN+  + E     +      C 
Sbjct: 7   RLNQFKNKGKDVNELRRRRVEVNVELRKANKDDQIFKRRNVTAMPEDATSPLQERSQNCQ 66

Query: 131 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              + TV E++ G+ S N + ++ AT++ARK+LS+++HPPID LI AG++P
Sbjct: 67  GLRQWTVEEIVAGVNSGNSESQLQATQAARKLLSRDKHPPIDHLISAGLIP 117

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|223647006|gb|ACN10261.1| Importin subunit alpha-2 [Salmo salar] gi|223672871|gb|ACN12617.1| Importin subunit alpha-2 [Salmo salar]

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 80/113 (70%), Gaps = 4/113 (3%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPT-- 128
           R   FKN GK  +E+RR+R E+NVELRKA KDDQ+FKRRN+  L  ++E    + E +  
Sbjct: 10  RLDKFKNKGKDANELRRRRVEVNVELRKAKKDDQIFKRRNVTTL--VDEATSPLQEKSQN 67

Query: 129 CMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           C +  + +V E++ G+ S+N   ++ AT++ARK+LS+ERHPPID +I AG++P
Sbjct: 68  CQATRQWSVEEILAGVNSNNLDAQLNATQAARKLLSRERHPPIDHIISAGLIP 120

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410901792|ref|XP_003964379.1| PREDICTED: importin subunit alpha-2-like [Takifugu rubripes]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 82/120 (68%), Gaps = 3/120 (2%)

Query: 62  MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEEN 121
           MS+    ++R   FKN GK  +E+RR+R E+NVELRKA KDDQ+FKRRN+    E     
Sbjct: 1   MSENTVRLNR---FKNKGKDANELRRRRVEVNVELRKAKKDDQMFKRRNVAAFPEEATSP 57

Query: 122 VTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +        +  + TV E++ G+ S +P++++ AT++ARK+LS+++HPPID++I AG++P
Sbjct: 58  LQERSQNQQATKQWTVEEIVAGVTSDSPELQLQATQAARKLLSRDKHPPIDQMIHAGLIP 117

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405950951|gb|EKC18904.1| Importin subunit alpha-1 [Crassostrea gigas]

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 18/120 (15%)

Query: 70  DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTC 129
           +R  ++KN G+  DEMRR+R +++VELRK  KDDQL KRRN+     IEE++    EPT 
Sbjct: 6   NRIKTYKNKGRDVDEMRRRRTDVSVELRKQKKDDQLLKRRNV----AIEEDD----EPT- 56

Query: 130 MSPIK--------MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
            SP+K        +T+ E+I G+ S++P+ +M  T++ARK+LSKER+PPID++I+AGV+P
Sbjct: 57  -SPLKDNSNKGPGLTLVEIIAGINSTSPQTQMQCTQAARKLLSKERNPPIDDIIQAGVIP 115

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|427785233|gb|JAA58068.1| Putative karyopherin importin alpha [Rhipicephalus pulchellus]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 79/119 (66%), Gaps = 13/119 (10%)

Query: 70  DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI----DQLDEIEEENVTVI 125
           +R  +FKN GK   EMRR+R E++VELRK  KD+Q+ KRRN+    D +  + E+N    
Sbjct: 5   NRIVNFKNKGKDQQEMRRRRNEVSVELRKQRKDEQILKRRNVSFSEDPVSPLHEQNKGSF 64

Query: 126 EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
                     +V EM+ G+ S +P ++++AT+S RKMLS+ERHPPID +I+AGVVP+ V
Sbjct: 65  ---------ASVDEMVAGLTSPDPDVQLMATQSVRKMLSRERHPPIDAMIQAGVVPVLV 114

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432871172|ref|XP_004071868.1| PREDICTED: importin subunit alpha-2-like [Oryzias latipes]

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 76/111 (68%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 130
           R   FKN GK  +E+RR+R E+NVELRKA KDDQ+FKRRN+    E     +      C 
Sbjct: 6   RLTQFKNKGKDANELRRRRVEVNVELRKAKKDDQMFKRRNVAAAPEEATSPLQERTQNCQ 65

Query: 131 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  + T+ E++ G+ S + + ++ AT++ARK+LS+E+HPPID++I AG++P
Sbjct: 66  NSRQWTIEEIVSGLNSGSRESQLQATQAARKLLSREKHPPIDQMISAGLIP 116

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345488160|ref|XP_001605009.2| PREDICTED: importin subunit alpha-2-like [Nasonia vitripennis]

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 83/119 (69%), Gaps = 5/119 (4%)

Query: 66  VAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI 125
           ++A  R + FK  GK FDE RR+R E++VELRKAHKD+QL K+RNI+    IE+E ++  
Sbjct: 6   MSANSRISKFKFQGK-FDEARRRRTEVSVELRKAHKDNQLLKKRNIN----IEDEPLSPP 60

Query: 126 EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
                    M++ E+I GM S + +  + AT++ RKMLS+ER+PPI+++IE G+VP+CV
Sbjct: 61  SDQKSPVFNMSIDEIIAGMTSEDDQAMLQATQACRKMLSRERNPPINDMIEKGIVPLCV 119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077394|ref|XP_975293.1| PREDICTED: similar to importin alpha 1a [Tribolium castaneum] gi|270001645|gb|EEZ98092.1| hypothetical protein TcasGA2_TC000505 [Tribolium castaneum]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 5/116 (4%)

Query: 70  DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI-EPT 128
           +R  SFKN GK  +EMRR+R    +ELRKA K+DQL KRRNI     ++EE  T + E  
Sbjct: 5   NRIRSFKNKGKDCEEMRRRRAGQTIELRKAKKEDQLLKRRNI----SLQEEASTPLQENN 60

Query: 129 CMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
            +S I M+  E++ GM S +  ++  AT++ RKMLS+ER+PPID +I  GVVP CV
Sbjct: 61  SVSLITMSAEEILMGMMSPDENLQFKATQACRKMLSRERNPPIDHMIRLGVVPRCV 116

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029460|ref|XP_003698390.1| PREDICTED: importin subunit alpha-2-like [Apis florea]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 84/114 (73%), Gaps = 5/114 (4%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 130
           RKA+FK   K  +E RR+R E++VELRKA KD+QL KRRN++    + +E+   +  + +
Sbjct: 11  RKANFKFNNK-HEEARRRRSEISVELRKARKDEQLLKRRNLN----VGKESQNPVSESNL 65

Query: 131 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
           SPI +++ E++ GMKSS+  +++ AT++ RKMLS+E++PPID +I+ G+VP CV
Sbjct: 66  SPISVSIEEIVNGMKSSDQTIQLQATQACRKMLSREKNPPIDIMIQRGIVPRCV 119

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
ZFIN|ZDB-GENE-040718-22	546	kpna2 "karyopherin alpha 2 (RA	0.641	0.219	0.438	2.4e-23
UNIPROTKB|J3KS65	143	KPNA2 "Importin subunit alpha-	0.566	0.741	0.439	2.1e-20
UNIPROTKB|J3QLL0	134	KPNA2 "Importin subunit alpha-	0.566	0.791	0.439	2.1e-20
UNIPROTKB|F1M4P1	522	F1M4P1 "Importin subunit alpha	0.636	0.227	0.418	3.6e-20
UNIPROTKB|F1NJS6	528	KPNA2 "Importin subunit alpha"	0.647	0.229	0.419	4.7e-20
UNIPROTKB|P52292	529	KPNA2 "Importin subunit alpha-	0.566	0.200	0.439	1.3e-19
RGD|621419	529	Kpna2 "karyopherin alpha 2" [R	0.636	0.224	0.398	1.7e-19
UNIPROTKB|Q6P6T9	529	Kpna2 "Importin subunit alpha"	0.636	0.224	0.398	1.7e-19
UNIPROTKB|E2R6L9	529	KPNA2 "Importin subunit alpha"	0.636	0.224	0.398	1.7e-19
UNIPROTKB|J9P954	529	J9P954 "Importin subunit alpha	0.636	0.224	0.398	2.1e-19

ZFIN|ZDB-GENE-040718-22 kpna2 "karyopherin alpha 2 (RAG cohort 1, importin alpha 1)" [Danio rerio (taxid:7955)]

 Score = 258 (95.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 53/121 (43%), Positives = 76/121 (62%)

Query:    61 KMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEE 120
             KMS       R   FKN GK   E+RR+R E+NVELRKA KD+Q+ KRRN+    +    
Sbjct:    21 KMSAANENTARLTQFKNKGKDATELRRRRIEVNVELRKAKKDEQILKRRNVSSFPDEATS 80

Query:   121 NVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVV 180
              +      C +    TV E++ G+ S+N + ++ AT++ARK+LS+ERHPPID +I AG++
Sbjct:    81 PLQEKSQNCQAQ-HWTVEEIVNGVNSNNLETQVQATQAARKLLSRERHPPIDRIISAGLI 139

Query:   181 P 181
             P
Sbjct:   140 P 140

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|J3KS65 KPNA2 "Importin subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 47/107 (43%), Positives = 72/107 (67%)

Query:    75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 134
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +  +           + 
Sbjct:    17 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-DATSPLQENRNNQGTVN 75

Query:   135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct:    76 WSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIP 122

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|J3QLL0 KPNA2 "Importin subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 47/107 (43%), Positives = 72/107 (67%)

Query:    75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 134
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +  +           + 
Sbjct:    17 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-DATSPLQENRNNQGTVN 75

Query:   135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct:    76 WSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIP 122

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|F1M4P1 F1M4P1 "Importin subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 3.6e-20, P = 3.6e-20
 Identities = 51/122 (41%), Positives = 79/122 (64%)

Query:    60 TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEE 119
             TK +   AA  R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + + 
Sbjct:     4 TKNANSTAA--RLKRFKNKGKDSTEMRRRRREVNVELRKAKKDDQMLKRRNVSSFPD-DS 60

Query:   120 ENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGV 179
              +         S +  +V ++++G+ S+N + ++ AT+++RK+LS+E+ PPID +I AG+
Sbjct:    61 TSPLQENRNYQSTVNWSVEDIVKGINSNNLESQLQATQASRKLLSREKQPPIDNIIRAGL 120

Query:   180 VP 181
             +P
Sbjct:   121 IP 122

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|F1NJS6 KPNA2 "Importin subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 4.7e-20, P = 4.7e-20
 Identities = 52/124 (41%), Positives = 81/124 (65%)

Query:    58 INTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEI 117
             ++T  +   AA  R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + 
Sbjct:     1 MSTNENTNTAA--RLNRFKNKGKDTTEMRRRRIEVNVELRKAKKDDQMLKRRNVSTFPDD 58

Query:   118 EEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA 177
                 +       +S    +V E+++G+ S+N ++++ AT++ARK+LS+E+ PPID +I+A
Sbjct:    59 ATSPLQENRSNQVSA-HWSVEEIVKGVNSNNMELQLQATQAARKLLSREKQPPIDNIIQA 117

Query:   178 GVVP 181
             G++P
Sbjct:   118 GLIP 121

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IEA

GO:0008139 "nuclear localization sequence binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|P52292 KPNA2 "Importin subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 47/107 (43%), Positives = 72/107 (67%)

Query:    75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 134
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +  +           + 
Sbjct:    17 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-DATSPLQENRNNQGTVN 75

Query:   135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct:    76 WSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIP 122

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IDA

GO:0008139 "nuclear localization sequence binding" evidence=IDA

GO:0000018 "regulation of DNA recombination" evidence=TAS

GO:0000085 "G2 phase of mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006259 "DNA metabolic process" evidence=TAS

GO:0000072 "M phase specific microtubule process" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0042826 "histone deacetylase binding" evidence=IPI

RGD|621419 Kpna2 "karyopherin alpha 2" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 49/123 (39%), Positives = 78/123 (63%)

Query:    59 NTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIE 118
             N   +   A ++R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +
Sbjct:     4 NENANSTAARLNR---FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-D 59

Query:   119 EENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAG 178
               +           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG
Sbjct:    60 ATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 119

Query:   179 VVP 181
             ++P
Sbjct:   120 LIP 122

GO:0006606 "protein import into nucleus" evidence=ISO;TAS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0008139 "nuclear localization sequence binding" evidence=ISO

GO:0008565 "protein transporter activity" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0046015 "regulation of transcription by glucose" evidence=IDA

UNIPROTKB|Q6P6T9 Kpna2 "Importin subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 49/123 (39%), Positives = 78/123 (63%)

Query:    59 NTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIE 118
             N   +   A ++R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +
Sbjct:     4 NENANSTAARLNR---FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-D 59

Query:   119 EENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAG 178
               +           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG
Sbjct:    60 ATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 119

Query:   179 VVP 181
             ++P
Sbjct:   120 LIP 122

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|E2R6L9 KPNA2 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 49/123 (39%), Positives = 78/123 (63%)

Query:    59 NTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIE 118
             N   +   A ++R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +
Sbjct:     4 NENANSPAARLNR---FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-D 59

Query:   119 EENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAG 178
               +           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG
Sbjct:    60 ATSPLQENRNNQGTVNWSVDDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 119

Query:   179 VVP 181
             ++P
Sbjct:   120 LIP 122

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P954 J9P954 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 49/123 (39%), Positives = 78/123 (63%)

Query:    59 NTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIE 118
             N   +   A ++R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +
Sbjct:     4 NENANSPAARLNR---FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-D 59

Query:   119 EENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAG 178
               +           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG
Sbjct:    60 ATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIPAG 119

Query:   179 VVP 181
             ++P
Sbjct:   120 LIP 122

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-17
pfam01749	97	pfam01749, IBB, Importin beta binding domain	7e-16
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-13
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-11
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.001

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 5/121 (4%)

Query: 62  MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEE 120
            + +     R+ +FK  G+ S DE+RR+R E  VELRK  +++ L KRRN+  + E  E 
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAES 60

Query: 121 NVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVV 180
           +   +E          +P++ + + S + + ++ A    RK+LSKE  PPI  +I+AGVV
Sbjct: 61  SFIPME----QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVV 116

Query: 181 P 181
           P
Sbjct: 117 P 117

Length = 526

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 69.3 bits (170), Expect = 7e-16
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 71  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-DQLDEIEEENVTVIEPTC 129
           R+ S+KN G+  +EMRR+R E+ VELRK  +++QL KRRN+    ++  E    +   + 
Sbjct: 9   RRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSD 68

Query: 130 MSPIKMTVPEMIEGMKSSNP 149
              + + +P M++G+ S +P
Sbjct: 69  ADQLSLELPVMVQGVNSDDP 88

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AI 58
           SLLSS + NI KEA WTISNITAGN+ QI  VI   L+P ++++L + + K++KEA  AI
Sbjct: 334 SLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393

Query: 59  NTKMS 63
           +   S
Sbjct: 394 SNATS 398

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1  SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
          SLLSSS  N+ +EAAW +SN++AGN+  I  V++ G LP +V +L++ D +V K A 
Sbjct: 14 SLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL S    +VK A W + N+ AG       V++ G +P +VN+L++ +  +QK A 
Sbjct: 57  LLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 25 NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
          +      VI+ G +P +V +L + D +VQ+EAA
Sbjct: 1  SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAA 33

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 1  SLLSSSRVNIVKEAAWTISNITA 23
           LLSS    + +EAAW +SN+ A
Sbjct: 19 QLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
KOG0166|consensus	514		99.91
KOG0166|consensus	514		99.9
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.87
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.41
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.39
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.83
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.83
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.63
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.32
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	98.04
KOG4224|consensus	550		98.02
KOG4224|consensus	550		98.01
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.0
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.85
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.42
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.66
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.22
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.97
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.58
PRK09687	280	putative lyase; Provisional	95.27
PF05804	708	KAP: Kinesin-associated protein (KAP)	95.07
KOG1048|consensus	717		94.9
PF05804	708	KAP: Kinesin-associated protein (KAP)	94.82
KOG1048|consensus	717		94.73
KOG2160|consensus	342		94.6
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.87
PRK09687	280	putative lyase; Provisional	92.91
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	92.76
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	91.91
KOG4199|consensus	461		90.06
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	88.13
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	87.46
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	84.36
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	84.17
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	83.56
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	83.39
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	82.81
KOG2171|consensus	1075		81.61

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.96  E-value=6.8e-30  Score=220.20  Aligned_cols=121  Identities=34%  Similarity=0.504  Sum_probs=100.9

Q ss_pred             cchhhhhHhhhhhhccCCC-hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHH
Q psy10739         63 SQKVAAIDRKASFKNAGKS-FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMI  141 (187)
Q Consensus        63 ~t~~~~~~R~~~fKn~g~d-~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv  141 (187)
                      .+..-|++|+.+||+||.. ++++||+|++.+|||||+||||.|.||||......+..+..-    +-.......+|+|.
T Consensus         2 ~srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i----~meqq~~~elp~lt   77 (526)
T COG5064           2 TSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFI----PMEQQFYSELPQLT   77 (526)
T ss_pred             CcccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccC----chhHHhhhhhHHHH
Confidence            3466788999999999864 899999999999999999999999999998433332222211    00112234689999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        142 EGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       142 ~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.++|+|.+.|+.|+..|||+||+|.+||||.||++|+|||||+||
T Consensus        78 ~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm  123 (526)
T COG5064          78 QQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM  123 (526)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHH
Confidence            9999999999999999999999999999999999999999999996

>KOG0166|consensus

Probab=99.91  E-value=7.9e-25  Score=197.73  Aligned_cols=115  Identities=37%  Similarity=0.536  Sum_probs=94.1

Q ss_pred             hhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcC
Q psy10739         67 AAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKS  146 (187)
Q Consensus        67 ~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S  146 (187)
                      ....|.+.||++++|.++|||||+|..|||||+||+|+|+||||.....  ...+    ..+.+......++.++.+++|
T Consensus         4 ~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~S   77 (514)
T KOG0166|consen    4 SSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEEL--MLDE----LLSDSQSQASNLELMLAALYS   77 (514)
T ss_pred             hhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhc--cccc----ccchhHHHhhhhHHHHHHHhC
Confidence            4567889999999999999999999999999999999999999832100  0000    001111111347899999999


Q ss_pred             CCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        147 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       147 ~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +|+..|+.|+++|||+||.++||||++||.+|+||+||+||
T Consensus        78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l  118 (514)
T KOG0166|consen   78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFL  118 (514)
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHH
Confidence            99999999999999999999999999999999999999986

>KOG0166|consensus

Probab=99.90  E-value=1.8e-24  Score=195.45  Aligned_cols=167  Identities=22%  Similarity=0.261  Sum_probs=133.3

Q ss_pred             CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChH
Q psy10739          4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFD   83 (187)
Q Consensus         4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~   83 (187)
                      ++.++.++.||+|+|.|||+|+++|+++|+++|.+|.|+.+|.+++.+|+..|+||++|..++++..|....+....+ .
T Consensus       120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~-p  198 (514)
T KOG0166|consen  120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALD-P  198 (514)
T ss_pred             cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchH-H
Confidence            355689999999999999999999999999999999999999999999999999999999999999998877743322 1


Q ss_pred             HHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC--CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         84 EMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        84 e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~--~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                      -+           +-......+.-.||..|.    .|+++...  ++.-..+...||.+...|++.|++.+.+|||++ .
T Consensus       199 Ll-----------~~l~~~~~~~~lRn~tW~----LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl-s  262 (514)
T KOG0166|consen  199 LL-----------RLLNKSDKLSMLRNATWT----LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL-S  262 (514)
T ss_pred             HH-----------HHhccccchHHHHHHHHH----HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-H
Confidence            11           111222225566888773    33333111  111112236789999999999999999999999 7


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +||.+.|+-||.||++|+||++|++|
T Consensus       263 yLsdg~ne~iq~vi~~gvv~~LV~lL  288 (514)
T KOG0166|consen  263 YLTDGSNEKIQMVIDAGVVPRLVDLL  288 (514)
T ss_pred             HHhcCChHHHHHHHHccchHHHHHHH
Confidence            88999999999999999999999876

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=1.9e-24  Score=186.65  Aligned_cols=167  Identities=19%  Similarity=0.216  Sum_probs=132.7

Q ss_pred             CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHH
Q psy10739          5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDE   84 (187)
Q Consensus         5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e   84 (187)
                      +...-++.||+|+|+||++|+..|+..|+|+|.+|.++.+|++++.+||.+|.|||+|.+++++.+|.-.......++  
T Consensus       126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galep--  203 (526)
T COG5064         126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEP--  203 (526)
T ss_pred             cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHH--
Confidence            455668899999999999999999999999999999999999999999999999999999999988887776522211  


Q ss_pred             HhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC--CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy10739         85 MRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM  162 (187)
Q Consensus        85 ~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~--~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rkl  162 (187)
                      +       .==|-..+.+-.|.  ||.+|.    .|+++.+.  +++.......+|-+.+.|+|-|++...+|||++ .+
T Consensus       204 l-------L~ll~ss~~~isml--Rn~TWt----LSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi-SY  269 (526)
T COG5064         204 L-------LGLLLSSAIHISML--RNATWT----LSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI-SY  269 (526)
T ss_pred             H-------HHHHHhccchHHHH--HHhHHH----HHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HH
Confidence            1       11112333333444  787773    34444221  222233346799999999999999999999999 99


Q ss_pred             hcCCCCCcHHHHHHcCCcccccccC
Q psy10739        163 LSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       163 LS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ||.+.|.-||.||+.|+-+||||+|
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElL  294 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELL  294 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHh
Confidence            9999999999999999999999986

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.87  E-value=4.2e-23  Score=150.50  Aligned_cols=94  Identities=36%  Similarity=0.580  Sum_probs=64.2

Q ss_pred             hhhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhc-ccCCCCCCCccCCHHHHHHH
Q psy10739         65 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVT-VIEPTCMSPIKMTVPEMIEG  143 (187)
Q Consensus        65 ~~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~-~~~~~~~~~~~~~l~~iv~~  143 (187)
                      ...++.|++.|||+|+|++++||||+|++|||||+||||+|+||||+....++..+... .............++.||.+
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            45678999999999999999999999999999999999999999998653322211111 00011122334678999999


Q ss_pred             hcCCCHHHHHHHHHH
Q psy10739        144 MKSSNPKMRMIATRS  158 (187)
Q Consensus       144 l~S~d~~~ql~a~~~  158 (187)
                      ++|+|++.||+||++
T Consensus        83 v~S~d~~~ql~Atq~   97 (97)
T PF01749_consen   83 VNSDDPEVQLEATQQ   97 (97)
T ss_dssp             HTSSCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhCC
Confidence            999999999999985

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.41  E-value=4.1e-13  Score=136.87  Aligned_cols=128  Identities=18%  Similarity=0.177  Sum_probs=104.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      ||.|+++.++++|||+|+||++|+.++++.++++|.+|+|+.+|+++++++++||+|+|++.+.......+..       
T Consensus       617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~-------  689 (2102)
T PLN03200        617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS-------  689 (2102)
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH-------
Confidence            7899999999999999999999999999999999999999999999999999999999998843321100000       


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                             +.     .                     ...++.+++.+.++|.+..-.|+.++-.
T Consensus       690 -----------------------~v-----~---------------------~GaV~pL~~LL~~~d~~v~e~Al~ALan  720 (2102)
T PLN03200        690 -----------------------YA-----A---------------------EDAIKPLIKLAKSSSIEVAEQAVCALAN  720 (2102)
T ss_pred             -----------------------HH-----H---------------------cCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence                                   00     0                     0246789999999999999999999988


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +++...  -..++.+.|+||.||++|
T Consensus       721 Ll~~~e--~~~ei~~~~~I~~Lv~lL  744 (2102)
T PLN03200        721 LLSDPE--VAAEALAEDIILPLTRVL  744 (2102)
T ss_pred             HHcCch--HHHHHHhcCcHHHHHHHH
Confidence            887543  356678899999999875

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.39  E-value=1.1e-12  Score=133.77  Aligned_cols=181  Identities=17%  Similarity=0.125  Sum_probs=117.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC-
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK-   80 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~-   80 (187)
                      ||.|++..+++.|+|+++||++|+.+|.++|+++|.+|+|+++|.++++++|+||+|+++|.+.+.++.|..... .|. 
T Consensus       454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~-aGAI  532 (2102)
T PLN03200        454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES-AGAV  532 (2102)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHH-CCCH
Confidence            688999999999999999999999999999999999999999999999999999999999998765554543322 121 


Q ss_pred             Ch-------HHHhhhhhhHHHHHHhh---chhhHHhhhhccccc-cchhh---------h---hhcccC--CCCCCCccC
Q psy10739         81 SF-------DEMRRKRCEMNVELRKA---HKDDQLFKRRNIDQL-DEIEE---------E---NVTVIE--PTCMSPIKM  135 (187)
Q Consensus        81 d~-------~e~RrrR~e~~veLRK~---kree~l~KrRn~~~~-~~~~~---------s---~~~~~~--~~~~~~~~~  135 (187)
                      .+       .+.+-+ ++..--|-..   -..+++.  .-...+ .+++.         .   ......  .......+.
T Consensus       533 ppLV~LL~sgd~~~q-~~Aa~AL~nLi~~~d~~~I~--~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g  609 (2102)
T PLN03200        533 PALLWLLKNGGPKGQ-EIAAKTLTKLVRTADAATIS--QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND  609 (2102)
T ss_pred             HHHHHHHhCCCHHHH-HHHHHHHHHHHhccchhHHH--HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc
Confidence            00       011111 1111111100   0000000  000000 00000         0   000000  000001235


Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        136 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       136 ~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      -++.|++.+.++++..+.+|+|.+=.+-+ .+...++.+|.+|.||.+|.+|
T Consensus       610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-~~~d~~~avv~agaIpPLV~LL  660 (2102)
T PLN03200        610 ALRTLIQLLSSSKEETQEKAASVLADIFS-SRQDLCESLATDEIINPCIKLL  660 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHH
Confidence            79999999999999999999999977766 4556689999999999999875

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.83  E-value=1.7e-09  Score=66.24  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=37.4

Q ss_pred             ChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739         25 NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus        25 ~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      ++++++.++++|.+|.|+.+|.+.+.+++++|+|+++|.+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999998863

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.83  E-value=2.6e-08  Score=72.03  Aligned_cols=66  Identities=39%  Similarity=0.573  Sum_probs=60.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA   67 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~   67 (187)
                      +|.+++..++..|+|+|.|++.++++..+.+++.|++|.|+.+|.+.+.+++..|+|++++.+...
T Consensus        15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020          15 LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            467778899999999999999999999999999999999999999999999999999998885443

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.63  E-value=3.3e-08  Score=71.54  Aligned_cols=62  Identities=31%  Similarity=0.477  Sum_probs=57.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +|.++++.++..|+|+++||+.+.+.....+++.|++|.|+++|...+.++++.|+|++++.
T Consensus        57 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l  118 (120)
T cd00020          57 LLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL  118 (120)
T ss_pred             HHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            46778899999999999999999888888889999999999999999999999999998765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.32  E-value=3.6e-07  Score=58.92  Aligned_cols=53  Identities=23%  Similarity=0.441  Sum_probs=47.3

Q ss_pred             chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccc
Q psy10739          9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKM   62 (187)
Q Consensus         9 ~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~   62 (187)
                      .+|..|+|+|++++.+..++.+. .-..++|.|+.+|.+.+.+||..|||+|++
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            57899999999999988888877 446689999999999999999999999975

...

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=98.04  E-value=4.2e-06  Score=50.06  Aligned_cols=38  Identities=34%  Similarity=0.419  Sum_probs=34.8

Q ss_pred             hhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739         26 SRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus        26 ~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +++.+.++++|.+|.|+.+|++++.+++++|+|++.|.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl   39 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL   39 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            35788899999999999999999999999999999875

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4224|consensus

Probab=98.02  E-value=4.1e-05  Score=67.87  Aligned_cols=163  Identities=20%  Similarity=0.247  Sum_probs=109.9

Q ss_pred             CCCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcC--ChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhcc
Q psy10739          1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG--LLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNA   78 (187)
Q Consensus         1 ~lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~--~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~   78 (187)
                      +||.+.+..++.-+|-+||||+-. ..+=+.+..++  ++|.|++++.+++.++|=.|..|+.+.+++.. +.+-... +
T Consensus       215 sll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~-a  291 (550)
T KOG4224|consen  215 SLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVE-A  291 (550)
T ss_pred             hhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHh-c
Confidence            478889999999999999999874 44455667787  99999999999999999999999999866643 3333233 2


Q ss_pred             CCChHHHhhhhhhHHHHHHhhch----hhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHH-HHH
Q psy10739         79 GKSFDEMRRKRCEMNVELRKAHK----DDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPK-MRM  153 (187)
Q Consensus        79 g~d~~e~RrrR~e~~veLRK~kr----ee~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~-~ql  153 (187)
                      |--         ..-|+|-..--    -+..+--||+..-+.+. ...         .....+..+|..+.-+|.+ .|.
T Consensus       292 g~l---------P~lv~Llqs~~~plilasVaCIrnisihplNe-~lI---------~dagfl~pLVrlL~~~dnEeiqc  352 (550)
T KOG4224|consen  292 GSL---------PLLVELLQSPMGPLILASVACIRNISIHPLNE-VLI---------ADAGFLRPLVRLLRAGDNEEIQC  352 (550)
T ss_pred             CCc---------hHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cce---------ecccchhHHHHHHhcCCchhhhh
Confidence            311         23444431100    01223335543211100 000         0124577899988777655 999


Q ss_pred             HHHHHHHhhhc-CCCCCcHHHHHHcCCcccccccC
Q psy10739        154 IATRSARKMLS-KERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       154 ~a~~~~RklLS-~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .|+..+|.|-. .|+|  ...++++|.||++.+++
T Consensus       353 hAvstLrnLAasse~n--~~~i~esgAi~kl~eL~  385 (550)
T KOG4224|consen  353 HAVSTLRNLAASSEHN--VSVIRESGAIPKLIELL  385 (550)
T ss_pred             hHHHHHHHHhhhhhhh--hHHHhhcCchHHHHHHH
Confidence            99999998864 4544  56788999999998874

>KOG4224|consensus

Probab=98.01  E-value=1.6e-05  Score=70.36  Aligned_cols=125  Identities=22%  Similarity=0.312  Sum_probs=98.4

Q ss_pred             CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChH
Q psy10739          4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFD   83 (187)
Q Consensus         4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~   83 (187)
                      .+.+..++..|.=+++|+|. ..+.=+.++.+|-+|.|+.+|+++|.++|.=+|-++++..               +|. 
T Consensus       177 kskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa---------------Vd~-  239 (550)
T KOG4224|consen  177 KSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA---------------VDR-  239 (550)
T ss_pred             ccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh---------------hhH-
Confidence            45667899999999999997 4566778899999999999999999999999999998882               220 


Q ss_pred             HHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy10739         84 EMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKML  163 (187)
Q Consensus        84 e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklL  163 (187)
                        |.||.              |.              +.+|          --++.+|+.+.++++..+.+|+-++|.+-
T Consensus       240 --~~Rk~--------------La--------------qaep----------~lv~~Lv~Lmd~~s~kvkcqA~lALrnla  279 (550)
T KOG4224|consen  240 --RARKI--------------LA--------------QAEP----------KLVPALVDLMDDGSDKVKCQAGLALRNLA  279 (550)
T ss_pred             --HHHHH--------------HH--------------hccc----------chHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence              11000              11              0010          24689999999999999999999998887


Q ss_pred             cCCCCCcHHHHHHcCCcccccccC
Q psy10739        164 SKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       164 S~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      |.+  .-+-+|.++|-+|.+|++|
T Consensus       280 sdt--~Yq~eiv~ag~lP~lv~Ll  301 (550)
T KOG4224|consen  280 SDT--EYQREIVEAGSLPLLVELL  301 (550)
T ss_pred             ccc--hhhhHHHhcCCchHHHHHH
Confidence            754  4566889999999999875

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.00  E-value=3.7e-05  Score=70.70  Aligned_cols=159  Identities=15%  Similarity=0.129  Sum_probs=114.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhcc---
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNA---   78 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~---   78 (187)
                      .|.|+++.||.-|||.|.+++..+...++.+.+.+++|.++.+|.++|..|.+.|+=++.+....... -...|.+.   
T Consensus        85 gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~  163 (503)
T PF10508_consen   85 GLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLS  163 (503)
T ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHH
Confidence            47899999999999999999998888899999999999999999999999999999998777554332 22233211   


Q ss_pred             ------CCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHH
Q psy10739         79 ------GKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMR  152 (187)
Q Consensus        79 ------g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~q  152 (187)
                            +...+..|-|=-+..+++=+..  +..+.              ..        ....-++.++..+.++|.-.|
T Consensus       164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~--------------~~--------~~sgll~~ll~eL~~dDiLvq  219 (503)
T PF10508_consen  164 KLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAE--------------AV--------VNSGLLDLLLKELDSDDILVQ  219 (503)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHH--------------HH--------HhccHHHHHHHHhcCccHHHH
Confidence                  1112334444444444442211  11110              00        001358899999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        153 MIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       153 l~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.|+.-+-.|-.  .+.-.+-+.+.|++++++.++
T Consensus       220 lnalell~~La~--~~~g~~yL~~~gi~~~L~~~l  252 (503)
T PF10508_consen  220 LNALELLSELAE--TPHGLQYLEQQGIFDKLSNLL  252 (503)
T ss_pred             HHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHH
Confidence            999999966654  556678888999999988653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.85  E-value=0.00012  Score=61.94  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=99.8

Q ss_pred             CCC-CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhh-hHhhhhhhccC
Q psy10739          2 LLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAA-IDRKASFKNAG   79 (187)
Q Consensus         2 lL~-~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~-~~R~~~fKn~g   79 (187)
                      +|. +.++.|+.-|+++++|.++-+.. -..+-+.|.++.+..+|.+++..+|..|.|++.+.+.... ....+.|-+..
T Consensus        20 lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V   98 (254)
T PF04826_consen   20 LLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV   98 (254)
T ss_pred             HHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            344 45789999999999998764433 3355589999999999999999999999999976644432 23333342211


Q ss_pred             CChHHHhhhhhhHHHHHHhhchhhHHhhh---hccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHH
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKDDQLFKR---RNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIAT  156 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kree~l~Kr---Rn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~  156 (187)
                      .     +     ..+. ..-.-+.|+.--   +|++.. ++           ........++.++..+.+++...+..+.
T Consensus        99 c-----~-----~~~s-~~lns~~Q~agLrlL~nLtv~-~~-----------~~~~l~~~i~~ll~LL~~G~~~~k~~vL  155 (254)
T PF04826_consen   99 C-----E-----ETVS-SPLNSEVQLAGLRLLTNLTVT-ND-----------YHHMLANYIPDLLSLLSSGSEKTKVQVL  155 (254)
T ss_pred             H-----H-----HHhc-CCCCCHHHHHHHHHHHccCCC-cc-----------hhhhHHhhHHHHHHHHHcCChHHHHHHH
Confidence            0     0     0000 000111222211   333210 00           0111224688999999999999998887


Q ss_pred             HHHHhhhcCCCCCc-HHHHHHcCCccccccc
Q psy10739        157 RSARKMLSKERHPP-IDELIEAGVVPICVFQ  186 (187)
Q Consensus       157 ~~~RklLS~e~nPP-Id~VI~aGvVP~~V~~  186 (187)
                      ..+ --||  .||- ..+++.+++++.|+.+
T Consensus       156 k~L-~nLS--~np~~~~~Ll~~q~~~~~~~L  183 (254)
T PF04826_consen  156 KVL-VNLS--ENPDMTRELLSAQVLSSFLSL  183 (254)
T ss_pred             HHH-HHhc--cCHHHHHHHHhccchhHHHHH
Confidence            766 4444  3565 6899999999998865

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.42  E-value=6.9e-05  Score=45.47  Aligned_cols=22  Identities=41%  Similarity=0.732  Sum_probs=20.7

Q ss_pred             CCCCCCcchhHHHHHHHHHhcC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITA   23 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~a   23 (187)
                      ||.|++..++++|+|+|+|||+
T Consensus        20 ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   20 LLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHHHHHhC
Confidence            7889999999999999999985

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.66  E-value=0.0011  Score=45.77  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      .++++.+|.+|+|+|+++-  +.         .++|.|+.+|.+.++.||..|+|+++...
T Consensus        10 ~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen   10 NDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG   59 (88)
T ss_dssp             TSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred             cCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            7888999999999999652  22         34899999999999999999999998773

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.22  E-value=0.0021  Score=37.98  Aligned_cols=22  Identities=50%  Similarity=0.853  Sum_probs=19.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITA   23 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~a   23 (187)
                      ||.+++..++++|||+|+||+.
T Consensus        20 ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185       20 LLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcC
Confidence            6778899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.97  E-value=0.0092  Score=41.25  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhccccccchh
Q psy10739         11 VKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKV   66 (187)
Q Consensus        11 ~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~   66 (187)
                      .|-|.|++.||++ ++.-++.+.+.++++.++++..+. -..+|-=|.|++++.+..
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T   59 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST   59 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence            6889999999987 677788888899999999998765 679999999999998544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=95.58  E-value=0.005  Score=42.30  Aligned_cols=49  Identities=24%  Similarity=0.401  Sum_probs=39.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhcccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTK   61 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~   61 (187)
                      +|.++++.+|..|+|+|+.|  |         +...+|.|.++|.+. +..+|.+|+++|+
T Consensus        39 ~l~d~~~~vr~~a~~aL~~i--~---------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   39 LLKDEDPMVRRAAARALGRI--G---------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTSSSHHHHHHHHHHHHCC--H---------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHh--C---------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            46789999999999999998  2         344788899988875 5567999998875

>PRK09687 putative lyase; Provisional

Probab=95.27  E-value=0.012  Score=50.46  Aligned_cols=25  Identities=8%  Similarity=-0.013  Sum_probs=19.3

Q ss_pred             CCHHHHHHHhc-CCCHHHHHHHHHHH
Q psy10739        135 MTVPEMIEGMK-SSNPKMRMIATRSA  159 (187)
Q Consensus       135 ~~l~~iv~~l~-S~d~~~ql~a~~~~  159 (187)
                      ..+|.+.+.+. +.|+.....|.+++
T Consensus       252 ~a~p~L~~l~~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        252 TLLPVLDTLLYKFDDNEIITKAIDKL  277 (280)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence            35788888885 77888888887776

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=95.07  E-value=0.1  Score=50.27  Aligned_cols=116  Identities=17%  Similarity=0.271  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHHHhhhhh
Q psy10739         11 VKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRC   90 (187)
Q Consensus        11 ~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~RrrR~   90 (187)
                      ..=|+..|.|+|....-.. .+.+.|+++.|+.+|...+.++.--+.+.+...+-         |+. .           
T Consensus       266 lrv~~~lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi---------~~E-N-----------  323 (708)
T PF05804_consen  266 LRVAFYLLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI---------FKE-N-----------  323 (708)
T ss_pred             HHHHHHHHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---------CHH-H-----------
Confidence            3445668999998665544 44589999999999999888877666666543311         111 0           


Q ss_pred             hHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCc
Q psy10739         91 EMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP  170 (187)
Q Consensus        91 e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPP  170 (187)
                                |++ |.+                          ...++.++..+.|++.+.+..|+..+-.| |-..+ -
T Consensus       324 ----------K~~-m~~--------------------------~giV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~-~  364 (708)
T PF05804_consen  324 ----------KDE-MAE--------------------------SGIVEKLLKLLPSENEDLVNVALRLLFNL-SFDPE-L  364 (708)
T ss_pred             ----------HHH-HHH--------------------------cCCHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCHH-H
Confidence                      000 110                          02467888888899988887777766444 43221 2


Q ss_pred             HHHHHHcCCcccccccC
Q psy10739        171 IDELIEAGVVPICVFQR  187 (187)
Q Consensus       171 Id~VI~aGvVP~~V~~~  187 (187)
                      -..++++|+||+||.||
T Consensus       365 R~~mV~~GlIPkLv~LL  381 (708)
T PF05804_consen  365 RSQMVSLGLIPKLVELL  381 (708)
T ss_pred             HHHHHHCCCcHHHHHHh
Confidence            44788999999999875

>KOG1048|consensus

Probab=94.90  E-value=0.027  Score=53.91  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             CCCCCCCcchhHHHHHHHHHhcCCChh--hHHHHHHcCChHHHHHHhhc-CChhhhhhhhccc
Q psy10739          1 SLLSSSRVNIVKEAAWTISNITAGNSR--QIDHVIQEGLLPYIVNILEN-GDAKVQKEAAINT   60 (187)
Q Consensus         1 ~lL~~~~~~i~kea~w~lSNI~aG~~~--qiq~vi~~~~~p~l~~~l~~-~~~~vr~ea~w~l   60 (187)
                      .||.|+...|++-|||++=|+.-|+..  .-=++.+.|=+|.|+++|.+ .|.+|++.++=++
T Consensus       282 ~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~L  344 (717)
T KOG1048|consen  282 ALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGIL  344 (717)
T ss_pred             HHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHH
Confidence            378999999999999999999998766  66688899999999999987 6999999876444

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=94.82  E-value=0.15  Score=49.06  Aligned_cols=49  Identities=22%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             CCCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCCh
Q psy10739          1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDA   50 (187)
Q Consensus         1 ~lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~   50 (187)
                      +||.+++..++..|++.|.|++-.+.- -..++..|++|.|+.+|..+++
T Consensus       338 kLl~s~~~~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~d~~~  386 (708)
T PF05804_consen  338 KLLPSENEDLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLKDPNF  386 (708)
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhCCCch
Confidence            367888889999999999999986554 5588899999999999987653

>KOG1048|consensus

Probab=94.73  E-value=0.051  Score=52.00  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=55.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +|.|..+.++-.|.--+-++|-|...--+.|-.-|-+|.||.+|.+...+|++.||||+-|.
T Consensus       241 mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL  302 (717)
T KOG1048|consen  241 MLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL  302 (717)
T ss_pred             HHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence            57788999999999999999999887666777889999999999999999999999998555

>KOG2160|consensus

Probab=94.60  E-value=0.058  Score=47.56  Aligned_cols=66  Identities=21%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhccccccchhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKVA   67 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~~   67 (187)
                      +|.|++..+|.-|+|+|+-++..|+.--+.|++.|.++.|+.+|++. +..+|.-|.+|++..-..-
T Consensus       132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~  198 (342)
T KOG2160|consen  132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNN  198 (342)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC
Confidence            47789999999999999999999998888999999999999999875 5688899999997664443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.87  E-value=0.028  Score=31.91  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=23.3

Q ss_pred             ChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739         37 LLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus        37 ~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      ++|.++++|.+.+.+||.-|+++++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i   27 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAI   27 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            479999999999999999999998654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PRK09687 putative lyase; Provisional

Probab=92.91  E-value=0.29  Score=41.86  Aligned_cols=57  Identities=23%  Similarity=0.138  Sum_probs=38.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHH-hhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNI-LENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~-l~~~~~~vr~ea~w~l~~~t   64 (187)
                      |+.|+++.+|..|+|+|+.|-.-...      ....+|.|..+ +...++.||..|+.+|+...
T Consensus        62 ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~  119 (280)
T PRK09687         62 LCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRC  119 (280)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence            56677788888888888887532211      12345677766 56677888888888887763

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=92.76  E-value=0.13  Score=43.52  Aligned_cols=66  Identities=17%  Similarity=0.277  Sum_probs=42.6

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChh--hHHHHHH------------------------------------cCChHHHHH
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSR--QIDHVIQ------------------------------------EGLLPYIVN   43 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~--qiq~vi~------------------------------------~~~~p~l~~   43 (187)
                      ||.+|++.++..|+|++-|++.....  +|+..|.                                    ++.+|.|+.
T Consensus        62 lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~  141 (254)
T PF04826_consen   62 LLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS  141 (254)
T ss_pred             HcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH
Confidence            67888888998899999988776433  3332111                                    123466666


Q ss_pred             HhhcCChhhhhhhhccccccchhh
Q psy10739         44 ILENGDAKVQKEAAINTKMSQKVA   67 (187)
Q Consensus        44 ~l~~~~~~vr~ea~w~l~~~t~~~   67 (187)
                      +|..++..+|-.+.+++.|.+...
T Consensus       142 LL~~G~~~~k~~vLk~L~nLS~np  165 (254)
T PF04826_consen  142 LLSSGSEKTKVQVLKVLVNLSENP  165 (254)
T ss_pred             HHHcCChHHHHHHHHHHHHhccCH
Confidence            666777777777777765554443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=91.91  E-value=0.074  Score=33.67  Aligned_cols=20  Identities=30%  Similarity=0.617  Sum_probs=17.9

Q ss_pred             CCCCCCcchhHHHHHHHHHh
Q psy10739          2 LLSSSRVNIVKEAAWTISNI   21 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI   21 (187)
                      +|.+++..||..|||+|+||
T Consensus        36 ~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen   36 LLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HTTSSSHHHHHHHHHHHHCH
T ss_pred             HHcCCCHHHHHHHHHHHhcC
Confidence            57788889999999999987

...

>KOG4199|consensus

Probab=90.06  E-value=0.39  Score=42.73  Aligned_cols=72  Identities=18%  Similarity=0.155  Sum_probs=59.2

Q ss_pred             CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC--ChhhhhhhhccccccchhhhhHhhhhhh
Q psy10739          5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAAINTKMSQKVAAIDRKASFK   76 (187)
Q Consensus         5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~--~~~vr~ea~w~l~~~t~~~~~~R~~~fK   76 (187)
                      ++++.|..|+|-+||=||--.++|-...|++|.--..++.|..-  ...+|+.|||.+-|...-+.+.|.-..-
T Consensus       341 ~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~  414 (461)
T KOG4199|consen  341 SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA  414 (461)
T ss_pred             CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh
Confidence            45789999999999999999999999999999999999999754  4589999999996664555555544444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=88.13  E-value=1  Score=32.98  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc--CChhhhhhhhccccccchhhhhHh
Q psy10739          9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN--GDAKVQKEAAINTKMSQKVAAIDR   71 (187)
Q Consensus         9 ~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~--~~~~vr~ea~w~l~~~t~~~~~~R   71 (187)
                      +++.+..-.|+|+|..+..--..|.+.|-+|.++.....  .++-+|.=|.||+-+...+.++.+
T Consensus         1 g~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ   65 (102)
T PF09759_consen    1 GFKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ   65 (102)
T ss_pred             CcHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence            367888999999999887766666788889999988654  368899999999987766655443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=87.46  E-value=0.45  Score=29.07  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             hhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhh
Q psy10739         71 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRR  109 (187)
Q Consensus        71 R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrR  109 (187)
                      |...|||++...+.-+|||+  .+|+-|.+|-+....-|
T Consensus         3 R~sqYK~~~~~~~Q~eRR~~--~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    3 RLSQYKNKGSALDQEERRRE--FLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TCSCTT-TTTSCSHHHHHHH--HHHHHHSHHSHHHHHHH
T ss_pred             cHHHhhcccchHhHHHHHHH--HHHHHHHHhHHHHHhcc
Confidence            67789998654444444444  67777888877665433

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=84.36  E-value=1.4  Score=24.28  Aligned_cols=22  Identities=18%  Similarity=0.465  Sum_probs=16.4

Q ss_pred             chhHHHHHHHHHhcCCChhhHHHH
Q psy10739          9 NIVKEAAWTISNITAGNSRQIDHV   32 (187)
Q Consensus         9 ~i~kea~w~lSNI~aG~~~qiq~v   32 (187)
                      .+|.+|+|+|+||  |+++-+..+
T Consensus         2 ~vR~~aa~aLg~~--~~~~a~~~L   23 (30)
T smart00567        2 LVRHEAAFALGQL--GDEEAVPAL   23 (30)
T ss_pred             HHHHHHHHHHHHc--CCHhHHHHH
Confidence            5799999999999  555544443

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=84.17  E-value=1.4  Score=43.49  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=17.1

Q ss_pred             hHHHHHHhhcCChhhhhhhhcccccc
Q psy10739         38 LPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus        38 ~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      ++.|+.+|.+.+..||++|+|+|+-.
T Consensus       840 ~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        840 VPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            36666666666667777777776553

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=83.56  E-value=1.2  Score=41.19  Aligned_cols=62  Identities=21%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      |+.+++..+|.-+++++.+|+..+++.-+.+.++|+++.++..|.+.|.-+|.-|+=.++..
T Consensus       168 l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L  229 (503)
T PF10508_consen  168 LMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL  229 (503)
T ss_pred             HHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            34455777899999999999999999999999999999999999998887776555545433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.39  E-value=1.5  Score=39.74  Aligned_cols=54  Identities=28%  Similarity=0.331  Sum_probs=42.9

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      |.|+++.++--|..++|||+  +++-++.     ++|.+..+|.+.++.||+-|+-++.-.
T Consensus        88 l~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i  141 (526)
T PF01602_consen   88 LNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKI  141 (526)
T ss_dssp             HCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            56888899999999999998  4555544     478899999999999999999886433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=82.81  E-value=0.39  Score=27.02  Aligned_cols=22  Identities=23%  Similarity=0.287  Sum_probs=19.0

Q ss_pred             CCCCCCcchhHHHHHHHHHhcC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITA   23 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~a   23 (187)
                      +|.+++..+|.-|++++++|+.
T Consensus         8 ~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    8 LLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHh
Confidence            5789999999999999999974

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2171|consensus

Probab=81.61  E-value=2  Score=43.14  Aligned_cols=66  Identities=23%  Similarity=0.256  Sum_probs=57.5

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc-ccchhhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK-MSQKVAA   68 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~-~~t~~~~   68 (187)
                      +|+|++-.-|+-|.-+||=|+.|..+++...++ .++|.++..|..+++.||--||-|++ |+|...|
T Consensus       356 ~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p  422 (1075)
T KOG2171|consen  356 MLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP  422 (1075)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence            688999999999999999999999999988665 48999999999999999999999985 5554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		9e-20
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		2e-16
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-12
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		2e-07
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		3e-12
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-07
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-12
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		7e-08
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		4e-12
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		7e-08
1ial_A	453	Importin Alpha, Mouse Length = 453		4e-12
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-08
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		4e-12
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-08
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-12
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		2e-07
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		4e-12
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-07
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		4e-12
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		2e-07
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		4e-12
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		2e-07
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		4e-12
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		2e-07
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		4e-12
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-07
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		4e-12
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		2e-07
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		5e-12
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		3e-07
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-11
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		7e-08
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-10
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		6e-05
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		2e-10
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		6e-05
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		3e-10
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		5e-05
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-10
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-05
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-10
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-05
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		3e-10
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		5e-05
4b8j_A	528	Rimp_alpha1a Length = 528		3e-09
1qgk_B	44	Structure Of Importin Beta Bound To The Ibb Domain		2e-08
2yns_A	490	Rimp_alpha_b54nls Length = 490		4e-08
2yns_A	490	Rimp_alpha_b54nls Length = 490		4e-08
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		9e-08
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-05
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		9e-08
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-05
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-06
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		4e-06
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-06
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-06
1qgr_B	27	Structure Of Importin Beta Bound To The Ibb Domain		2e-04
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		9e-04

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 75  FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVIEPTC 129
           FKN GK   EMRR+R E+NVELRKA KD+Q+ KRRN+     D    ++E          
Sbjct: 17  FKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENR------NN 70
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
              +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 71  QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 122

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 71  RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNI----DQLDEIEEENVTV- 124
           R+ +FKN G+ S DE+RR+R    VELRKA +D+ L KRRN     D  D  EE+  +V 
Sbjct: 17  RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 76
Query: 125 IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
            +    S ++  +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 77  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 55  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 309 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 365

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 41  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 89

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 105 LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 162
           LF+R ++D  D   +++++ + +  +    +  +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25  LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 163 LSKERHPPIDELIEAGVVP 181
           LS+E+ PPID +I AG++P
Sbjct: 85  LSREKQPPIDNIIRAGLIP 103

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 105 LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 162
           LF+R ++D  D   +++++ + +  +    +  +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25  LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 163 LSKERHPPIDELIEAGVVP 181
           LS+E+ PPID +I AG++P
Sbjct: 85  LSREKQPPIDNIIRAGLIP 103

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 299 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 355

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 102 DDQLFKRRNI-----DQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIAT 156
           D+Q+ KRRN+     D    ++E             +  +V ++++G+ S+N + ++ AT
Sbjct: 1   DEQMLKRRNVSSFPDDATSPLQENR------NNQGTVNWSVEDIVKGINSNNLESQLQAT 54
Query: 157 RSARKMLSKERHPPIDELIEAGVVP 181
           ++ARK+LS+E+ PPID +I AG++P
Sbjct: 55  QAARKLLSREKQPPIDNIIRAGLIP 79

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 307 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 363

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 51/76 (67%)
Query: 106 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 165
           F+R+++D  D   +++   +       +  +V ++++G+ S+N + ++ AT++ARK+LS+
Sbjct: 12  FERQHMDSPDLGTDDDDKAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 71
Query: 166 ERHPPIDELIEAGVVP 181
           E+ PPID +I AG++P
Sbjct: 72  EKQPPIDNIIRAGLIP 87

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 279 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 335

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 273 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 329

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 5   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 53

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 273 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 329

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 5   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 53

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 273 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 329

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 5   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 53

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 272 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 328

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 4   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 52

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 268 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 324

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 38/47 (80%)
Query: 135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
            +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 2   WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 48

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 272 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 328

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 4   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 52

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 268 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 324

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 38/47 (80%)
Query: 135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
            +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 2   WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 48

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V++L   D K QKEA
Sbjct: 274 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEA 329

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +  +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 6   VNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIP 54

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 315

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 45

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 315

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 45

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 316

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 46

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 47

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 316

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 46

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 47

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 83  DEMRRKRCEMNVELRKAHKDDQLFKRR--NIDQLDEIEEENVTVIEPTCMSPIKMTVPEM 140
           +E RR+R +  VE+RK+ +++ L K+R   +     +     T ++    S     +P M
Sbjct: 25  EEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLES-----LPAM 79
Query: 141 IEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
           I G+ S +  +++ AT   RK+LS ER PPI+E+I++GVVP
Sbjct: 80  IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120

>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 44

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 75  FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 111
           FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 7   FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1   SLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL+ + + +I KEA WTISNITAGN  QI  VI  G++  +VN+L+  +  ++KEAA
Sbjct: 297 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 354

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 106 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 165
           F+R+++D  D   ++     +   M+ I  ++P MI G+ S +  +++ AT   RK+LS 
Sbjct: 12  FERQHMDSPDLGTDD-----DDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSI 66
Query: 166 ERHPPIDELIEAGVVP 181
           ER PPI+E+I++GVVP
Sbjct: 67  ERSPPIEEVIQSGVVP 82

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 9   NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +I KEA WTISNITAGN  QI  VI   + P +++IL+  + + +KEAA
Sbjct: 288 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 336

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVV 180
           M+P  +   +MIE + S +P+ ++ AT+  RK+LSKE +PPIDE+I   GVV
Sbjct: 12  MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVV 63

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 9   NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +I KEA WTISNITAGN  QI  VI   + P +++IL+  + + +KEAA
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVV 180
           M+P  +   +MIE + S +P+ ++ AT+  RK+LSKE +PPIDE+I   GVV
Sbjct: 15  MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVV 66

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AIN 59
           LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA  A++
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 60  TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 98
              S      ++K + K AG + +++ + +   N +++K
Sbjct: 164 NIAS---GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQK 198

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
           LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AIN 59
           LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA  A++
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 60  TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 98
              S      ++K + K AG + +++ + +   N +++K
Sbjct: 164 NIAS---GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQK 198

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AIN 59
           LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA  A++
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205
Query: 60  TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 98
              S      ++K + K AG + +++ + +   N +++K
Sbjct: 206 NIAS---GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQK 240

>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha (Ii Crystal Form, Grown At Low Ph) Length = 27

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 86  RRKRCEMNVELRKAHKDDQLFKRRNI 111
           RR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 1   RRRRIEVNVELRKAKKDDQMLKRRNV 26

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL+S+   + KEAA  ++NI +G    I  ++  G +  +V +L + D++VQKEAA
Sbjct: 52  LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-27
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-08
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-08
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-08
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-20
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-13
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-07
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-07
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-18
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-06
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	4e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-11
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-05
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-09
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-09
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-05
1qgr_B	27	Protein (importin alpha-2 subunit); transport rece	3e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  107 bits (267), Expect = 1e-27
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 6/132 (4%)

Query: 59  NTKMSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLD-- 115
               + K     R+ +FKN G+ S DE+RR+R    VELRKA +D+ L KRRN       
Sbjct: 5   TDSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDG 64

Query: 116 ---EIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPID 172
              + E+E+    +    S ++  +P+M + + S + + ++ AT   R++LS+E  PPID
Sbjct: 65  ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124

Query: 173 ELIEAGVVPICV 184
            +I+AGVVP  V
Sbjct: 125 VVIQAGVVPRLV 136

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 32/57 (56%), Positives = 39/57 (68%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS + NI KEA WTISNITAGN+ QI  VI   L+P +V +LE  + K +KEA 
Sbjct: 348 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LLS     +   A   + NI  GN  Q   VI  G+LP +  +L +    ++KEA 
Sbjct: 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 362

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 50.4 bits (120), Expect = 6e-08
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            L +S++ ++++ A WT+SN+  G   Q D  +    LP +  ++ + D +   +A 
Sbjct: 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 50.0 bits (119), Expect = 9e-08
 Identities = 11/57 (19%), Positives = 27/57 (47%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LL +  V + ++A W + N+   ++   D+V+Q   +  I+ +  +    + + A 
Sbjct: 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +  +    +  EAAW ++NI +G S Q   V+    +P  + +L  G  +V+++A 
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           L+ S     + +A W IS ++ G    I  VI   +   +V +L +    VQ  A 
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 2   LLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL  +     KEA W ISN ++G       I +++ +G +  + ++LE  D ++ +   
Sbjct: 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 86.6 bits (214), Expect = 3e-20
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 83  DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 142
                 R     E   A  + Q     ++   D+ +         +    +  +V ++++
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMA---DIGSNQGTVNWSVEDIVK 64

Query: 143 GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
           G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V
Sbjct: 65  GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 106

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           SLL++ + NI KEA WT+SNITAG   QI  V+  GL+P++V +L   D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 20/57 (35%), Positives = 26/57 (45%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LL ++ + IV  A   I NI  G   Q   VI  G L    ++L N    +QKEA 
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 27/191 (14%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61
           L  +    I  E+AW ++NI +G S Q   V+  G +P  +++L +  A + ++A     
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV---- 164

Query: 62  MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMN-----VELRKAHKDDQL---FKRRNIDQ 113
                       +  N        R    +       + L        L   + R     
Sbjct: 165 -----------WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213

Query: 114 LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE 173
           L  +            +  ++  +P ++  +  ++P++   +  +    L+   +  I+ 
Sbjct: 214 LSNLCRNK---NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY-LTDGPNERIEM 269

Query: 174 LIEAGVVPICV 184
           +++ GVVP  V
Sbjct: 270 VVKKGVVPQLV 280

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LL  +   ++ ++ W IS +T G + +I+ V+++G++P +V +L   +  +   A 
Sbjct: 239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
           SLL+S   +I ++A W + NI    S   D VI+ G +  ++ +L   D        +
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 1   SLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            +LS +     KEAAW I+N T+ G   QI +++  G++  ++N+L   D K+ +   
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 1   SLLSSSRVNIVKE-----AAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKE 55
           +LL+   ++ +         WT+SN+    +        E +LP +V +L + D +V  +
Sbjct: 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 251

Query: 56  AA 57
           + 
Sbjct: 252 SC 253

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 71.9 bits (177), Expect = 5e-16
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 2  LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           L+S     ++ A   +S I +G + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + Q   V + G L  +  +  + + K+QKEA 
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 201

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 74.6 bits (184), Expect = 9e-17
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 201

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS    I++EA W +SNI +G + Q   V + G L  +  +  + + K+QKEA 
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 1  SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            L+S  +     A    S I +  + QI  VI  G LP +V +L + + ++ +EA 
Sbjct: 19 QQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
           +P+M + + S + + ++ ATR   + +  + +  I  +I+AG +P  V
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQ-ILSDGNEQIQAVIDAGALPALV 60

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 75.3 bits (185), Expect = 2e-16
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LLSS + +I KEA WTISNITAGN  QI  VI   + P +++IL+  + + +KEAA
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LL  +   +V  A   + NI  G+  Q   ++    L  ++++L +    ++KEA 
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEAC 297

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 113 QLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPID 172
              E +  N+ +          +   +MIE + S +P+ ++ AT+  RK+LSKE +PPID
Sbjct: 4   GFHEAQINNMEMAPGG------VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID 57

Query: 173 ELI-EAGVVPICV 184
           E+I   GVV   V
Sbjct: 58  EVISTPGVVARFV 70

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL  S  +++ +A W +S ++ G + +I  VI  G+   +V +L + D KV   A 
Sbjct: 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           L       +  E+AW ++NI +GNS Q   VIQ G +P  + +L +    VQ++A 
Sbjct: 73  LKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAV 128

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 50.3 bits (120), Expect = 8e-08
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
               +R+ + + A W +SN+  G S   +       L  +  +L   D  V  +A 
Sbjct: 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADAC 213

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60
            LLSS   ++ ++A W + NI   ++   D+V+   +LP ++ +    +       A+  
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +L ++     KEAAW I+N T+G S  QI ++++ G +  + ++L   D+K+ + A 
Sbjct: 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 59.8 bits (145), Expect = 4e-13
 Identities = 27/42 (64%), Positives = 31/42 (73%)

Query: 70  DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 111
            R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 2   ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            L S  + IV  A  T+ N++A N +  + +   G +  + N++ +    +   +A
Sbjct: 271 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 1   SLLSSSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
               ++ + I++     + N++   A N      + +   L  ++  L++    +   A 
Sbjct: 225 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 8   VNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGDAKVQKEAA 57
           + + + A   ++N+T G+      +   +G +  +V  L++    +Q+  A
Sbjct: 98  ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GLLPYIVNILENG-DAKVQKEAA 57
           + L S   ++ +  A  + N++          ++E G +  ++            K   
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             L S  + IV  A  T+ N++A N +  + +   G +  + N++ +    +   +A
Sbjct: 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
                  + + + A   ++N+T G+   +      +G +  +V  L++    +Q+  A
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 264

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 1   SLLSSSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
               ++ + I++     + N++   A N      + +   L  ++  L++    +   A 
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL S   NI + AA  +  + A +    + +  EG    +  +L + +  V   AA
Sbjct: 601 LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAA 57
            LL S  +N+V  AA  +SN+T  N +    V Q G +  +V  +        + + A 
Sbjct: 406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           ++L S   +++  A  T+ N+          V   G L  +V +L   + K      
Sbjct: 241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 297

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             L+     +V+   WT+ N++   ++Q      EGLL  +V +L + D  V   AA
Sbjct: 367 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAA 420

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
            LL       + +A   +    A        + ++G +P +V +L       Q+  ++
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +LL+ + V  +      +  +  GN      ++  G    +VNI+     +      
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 3/57 (5%), Positives = 20/57 (35%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +++ +     +      +  + +  S     +++ G +  +   L +   ++ +   
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 2   LLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
           L +  R +I + A   + ++T+         + V     LP +V +L         +A +
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAA 57
            LL+     +V +AA  +  ++   + +   +    ++  IV  ++N  D +  +  +
Sbjct: 157 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             +   R+  + EA     +I A +      +     +P  V +L +    +Q+ AA
Sbjct: 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           + +++ V   +  + T+ N+ + +   +  + + G +P +VN+L +    V   A 
Sbjct: 201 MQNTNDVETARCTSGTLHNL-SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL S   NI + AA  +  + A +    + +  EG    +  +L + +  V   AA
Sbjct: 465 LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 519

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            +L S   +++  A  T+ N+          V   G L  +V +L   + K      
Sbjct: 105 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGN---SRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            L +  R +I + A   + ++T+ +       + V     LP +V +L         +A 
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

Query: 58  I 58
           +
Sbjct: 374 V 374

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             L+     +V+   WT+ N++   ++Q      EGLL  +V +L + D  V   AA
Sbjct: 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAA 284

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGD--AKVQKEAA 57
           LL S  +N+V  AA  +SN+T  N +    V Q G +  +V  +        + + A 
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
            LL       + +A   +    A        + ++G +P +V +L       Q+  ++
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 9/56 (16%), Positives = 19/56 (33%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL+ + V  +      +  +  GN      ++  G    +VNI+     +      
Sbjct: 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 1  SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAA 57
           LL+     +V +AA  +  ++   + +   +    ++  IV  ++N  D +  +  A
Sbjct: 21 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           + +++ V   +  A T+ N+ + +   +  + + G +P +V +L +    V   A 
Sbjct: 65  MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 10/57 (17%), Positives = 21/57 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             +   R+  + E      +I A +      +     +P  V +L +    +Q+ AA
Sbjct: 422 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 3/58 (5%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 1   SLLSSSRVNIVKE-AAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +++ +     +    +  +  + +  S     +++ G +  +   L +   ++ +   
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
           LL S    +   AA  +  ++    +     +   L     ++         + A +
Sbjct: 506 LLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS---SLFRTEPMAWNETADL 559

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
           L +  R +I + A   + ++T+ +       + V     LP +V +L         +A +
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            +L S   +++  A  T+ N+          V   G L  +V +L   + K      
Sbjct: 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE--NGDAKVQKEAA 57
            LL S  +N+V  AA  +SN+T  N +    V Q G +  +V  +        + + A 
Sbjct: 273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           LL S   NI + AA  +  + A +    + +  EG    +  +L + +  V   AA
Sbjct: 468 LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
            LL       + +A   +    A        + ++G +P +V +L       Q+  ++
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             L+     +V+   WT+ N++   ++Q      EGLL  +V +L + D  V   AA
Sbjct: 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAA 287

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +LL+ + V  +      +  +  GN      ++  G    +VNI+     +      
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 1  SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAA 57
           LL+     +V +AA  +  ++   + +   +    ++  IV  ++N  D +  +  A
Sbjct: 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           + +++ V   +  A T+ N+ + +   +  + + G +P +V +L +    V   A 
Sbjct: 68  MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 3/57 (5%), Positives = 20/57 (35%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           +++ +     +      +  + +  S     +++ G +  +   L +   ++ +   
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 10/57 (17%), Positives = 21/57 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             +   R+  + E      +I A +      +     +P  V +L +    +Q+ AA
Sbjct: 425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           ++L      +   AA  + ++   N +    V +   +P +V +L++   +V   A 
Sbjct: 55  AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGAC 111

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 10  IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDA--KVQKEAA 57
            V     TI+ + A N      + +   +  +V I ++G+   K  + AA
Sbjct: 419 TVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 1  SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LSS         A+ I +    +      V Q G +  +V++L + +  VQ+ AA
Sbjct: 9  QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 10  IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           I+  A +T+ N+ A   +         +L  I+N+  +  +    EAA
Sbjct: 393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 6/56 (10%), Positives = 22/56 (39%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
           L   +   +  +A + IS +       +   ++      ++  ++    K++ ++A
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 5/57 (8%), Positives = 21/57 (36%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             +      +  ++A+ + N+  G+      +   G++  +V ++    +   +   
Sbjct: 174 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-GDAKVQKEAA 57
            L +    +   AA  I   +   +   + V+  G L  ++ +L+      V+ +A 
Sbjct: 90  YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGDAKVQKEAA 57
           L            A  ++ IT+ + +  + ++     L  +  ++ N    VQ    
Sbjct: 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 7/57 (12%), Positives = 18/57 (31%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
             L    + + + AA  + N+                + ++  + E+ D +     A
Sbjct: 630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 5/57 (8%), Positives = 18/57 (31%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
           L+++    +       I N+          + +  ++  +  + +  D    K   +
Sbjct: 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREV 772

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 1  SLLSSSRVN--IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
          S+L +  +    +  AA  I +     S     V Q   +  ++ +L+  +  VQ+   
Sbjct: 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVC 73

>1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} Length = 27

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 19/27 (70%), Positives = 23/27 (85%)

Query: 86  RRKRCEMNVELRKAHKDDQLFKRRNID 112
           RR+R E+NVELRKA KDDQ+ KRRN+ 
Sbjct: 1   RRRRIEVNVELRKAKKDDQMLKRRNVS 27

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.81
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.8
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.67
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.63
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.63
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.6
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.49
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.39
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.38
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.37
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.37
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.34
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.3
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.29
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.29
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.28
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.27
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.27
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.26
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.26
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.25
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.21
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.1
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.77
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.74
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.7
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.61
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.85
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.44
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.98
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.75
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.75
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.73
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.69
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.63
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.62
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.5
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.49
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	96.19
1qgr_A	876	Protein (importin beta subunit); transport recepto	95.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	95.61
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	94.9
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	94.37
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.21
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	92.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	92.22
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.98
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	91.36
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	88.71
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	88.14
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	87.63
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	87.46
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	86.23
3grl_A	651	General vesicular transport factor P115; vesicle t	84.1
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	81.46
3grl_A	651	General vesicular transport factor P115; vesicle t	80.79
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	80.18

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=1.3e-30  Score=235.03  Aligned_cols=122  Identities=39%  Similarity=0.615  Sum_probs=64.3

Q ss_pred             hhhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHh
Q psy10739         65 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGM  144 (187)
Q Consensus        65 ~~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l  144 (187)
                      .+.|++|++.|||+|+|.+|+||||+|..|||||+||||+|+||||+....++..++.. +...........+++|++++
T Consensus         7 ~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~lv~~l   85 (529)
T 3tpo_A            7 ANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQ-ENRNNQGTVNWSVEDIVKGI   85 (529)
T ss_dssp             -------------------------------------CCSCSCCCCCC----------------CGGGSSCCHHHHHHHH
T ss_pred             CCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhh-hccchhhhHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999999999999998654444333332 22222334457899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        145 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       145 ~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +|+|++.|+.|++++||+||.++||||+.||++|+||+||+||
T Consensus        86 ~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL  128 (529)
T 3tpo_A           86 NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL  128 (529)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.81  E-value=3.6e-21  Score=171.60  Aligned_cols=118  Identities=31%  Similarity=0.447  Sum_probs=59.0

Q ss_pred             hhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhc
Q psy10739         66 VAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK  145 (187)
Q Consensus        66 ~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~  145 (187)
                      ..++.|++.||+ ++|.+++||||+++.|||||+||||+|+||||+....++..++ .  ...........++.+++.+.
T Consensus         9 ~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~-~--~~~~~~~~~~~l~~lv~~L~   84 (528)
T 4b8j_A            9 ERVEVRRNRYKV-AVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA-S--AATGVDKKLESLPAMIGGVY   84 (528)
T ss_dssp             -------------------CCCCC-----------------CCCC-------------------------CHHHHHHHHT
T ss_pred             CChHHHHHhhcc-cCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc-c--cccchhhhHHHHHHHHHHHc
Confidence            356889999998 6899999999999999999999999999999974321111111 0  00111223468999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        146 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       146 S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      |+|++.++.|++.+|+++|.+.+||++.++++|+||.||++|
T Consensus        85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL  126 (528)
T 4b8j_A           85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFL  126 (528)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHh
Confidence            999999999999999999999999999999999999999875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.80  E-value=2.5e-21  Score=173.18  Aligned_cols=128  Identities=35%  Similarity=0.468  Sum_probs=85.8

Q ss_pred             ccccchhhhhHhhhhhhccC-CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccc--cchhhhhhccc-CCCCCC--Cc
Q psy10739         60 TKMSQKVAAIDRKASFKNAG-KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL--DEIEEENVTVI-EPTCMS--PI  133 (187)
Q Consensus        60 l~~~t~~~~~~R~~~fKn~g-~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~--~~~~~s~~~~~-~~~~~~--~~  133 (187)
                      .+|++...++.|++.|||+| +|.+++||||++.+|||||+|||++|+||||+...  .++..++.... ......  ..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (530)
T 1wa5_B            6 DSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQL   85 (530)
T ss_dssp             ------CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC---------------------------
T ss_pred             ccCCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhh
Confidence            47887778899999999999 99999999999999999999999999999998531  01111110000 000111  23


Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        134 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       134 ~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ...++.+++.++|+|++.+..|++.+|+++|.+.+|+++.++++|+||.||++|
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L  139 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM  139 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh
Confidence            467999999999999999999999999999999999999999999999999886

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.67  E-value=1.5e-17  Score=149.41  Aligned_cols=171  Identities=18%  Similarity=0.240  Sum_probs=119.4

Q ss_pred             CCCC-CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~-~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      ||.+ +.+.++.||+|+|+|||+|++++.++|+++|.+|.|+.+|.+++.++|..|+|+|++.+.+.++.|.......+.
T Consensus       108 lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i  187 (510)
T 3ul1_B          108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI  187 (510)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCh
Confidence            5654 457899999999999999999999999999999999999999999999999999999988888777776664222


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhh--HHhhhhccccccchhhhhhcccCCCCCC--CccCCHHHHHHHhcCCCHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDD--QLFKRRNIDQLDEIEEENVTVIEPTCMS--PIKMTVPEMIEGMKSSNPKMRMIAT  156 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree--~l~KrRn~~~~~~~~~s~~~~~~~~~~~--~~~~~l~~iv~~l~S~d~~~ql~a~  156 (187)
                                +..+.+-+....+  ...-.|+..+    ..+.......+...  .....+|.++..+.++|++.+..|+
T Consensus       188 ----------~~Ll~lL~~~~~~~~~~~~~~~a~~----~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~  253 (510)
T 3ul1_B          188 ----------DPLLALLAVPDLSTLACGYLRNLTW----TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC  253 (510)
T ss_dssp             ----------HHHHHHTCSSCGGGSCHHHHHHHHH----HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             ----------HHHHHHHHhccchhhhHHHHHHHHH----HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence                      1122222111111  0111233221    01111100000000  0124578899999999999999999


Q ss_pred             HHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        157 RSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       157 ~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ++++.+ +...+.-++.|+++|++|+||++|
T Consensus       254 ~aL~~L-~~~~~~~~~~i~~~g~i~~Lv~lL  283 (510)
T 3ul1_B          254 WAISYL-TDGPNERIEMVVKKGVVPQLVKLL  283 (510)
T ss_dssp             HHHHHH-TSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHH-hhchhhhHHHHHhcccchhhhhhh
Confidence            999665 555566788899999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.63  E-value=2.6e-16  Score=133.72  Aligned_cols=129  Identities=14%  Similarity=0.133  Sum_probs=106.0

Q ss_pred             CCCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-ChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         1 ~lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      +||.|+++.++..|+|+|+||+.+++..-+.+++.|.+|+|+.+|.+. +..+|+.|+||+++.+.+.+....       
T Consensus        89 ~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~-------  161 (296)
T 1xqr_A           89 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL-------  161 (296)
T ss_dssp             TTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH-------
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH-------
Confidence            489999999999999999999999999999999999999999999964 889999999999988543221000       


Q ss_pred             CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSA  159 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~  159 (187)
                                              .+..                          ...++.++..+.++|+..+.+|+|++
T Consensus       162 ------------------------~~~~--------------------------~ggi~~L~~lL~~~d~~v~~~A~~aL  191 (296)
T 1xqr_A          162 ------------------------QFLR--------------------------LDGFSVLMRAMQQQVQKLKVKSAFLL  191 (296)
T ss_dssp             ------------------------HHHH--------------------------TTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             ------------------------HHHH--------------------------CCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence                                    0110                          01367888899999999999999999


Q ss_pred             HhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        160 RKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       160 RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ..+.+. .+..++.++++|+||.||.+|
T Consensus       192 s~L~~~-~~~~~~~vv~~g~i~~Lv~LL  218 (296)
T 1xqr_A          192 QNLLVG-HPEHKGTLCSMGMVQQLVALV  218 (296)
T ss_dssp             HHHHHH-CGGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHhC-ChHHHHHHHHcCCHHHHHHHH
Confidence            777654 556789999999999999875

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.63  E-value=7.5e-17  Score=145.10  Aligned_cols=168  Identities=17%  Similarity=0.238  Sum_probs=118.1

Q ss_pred             CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHH
Q psy10739          5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDE   84 (187)
Q Consensus         5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e   84 (187)
                      ++.+.++.+|+|+|+|||.|++++.+.|+++|.+|.|+.+|.+++.+++..|+|||++.+.+.++.|.......+.    
T Consensus       131 ~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i----  206 (529)
T 3tpo_A          131 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAI----  206 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH----
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCc----
Confidence            4568899999999999999999999999999999999999999999999999999999988888788776664322    


Q ss_pred             HhhhhhhHHHHHHhhchhh--HHhhhhccccccchhhhhhcccCCCCC--CCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739         85 MRRKRCEMNVELRKAHKDD--QLFKRRNIDQLDEIEEENVTVIEPTCM--SPIKMTVPEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus        85 ~RrrR~e~~veLRK~kree--~l~KrRn~~~~~~~~~s~~~~~~~~~~--~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                            +..+.+-+....+  ...-.|+..+.    .+.......+..  ......+|.++..+.++|++.+..|+|+++
T Consensus       207 ------~~Ll~lL~~~~~~~~~~~~~~~a~~~----L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~  276 (529)
T 3tpo_A          207 ------DPLLALLAVPDLSTLACGYLRNLTWT----LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  276 (529)
T ss_dssp             ------HHHHHTTCSSCGGGSCHHHHHHHHHH----HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHhccchhHhHHHHHHHHHHH----HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence                  1122221111000  01112332211    111110000000  001245788999999999999999999996


Q ss_pred             hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        161 KMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .+ +...+.-++.|+++|++|+||++|
T Consensus       277 ~l-~~~~~~~~~~v~~~g~i~~Lv~lL  302 (529)
T 3tpo_A          277 YL-TDGPNERIEMVVKKGVVPQLVKLL  302 (529)
T ss_dssp             HH-HSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred             Hh-hhhhhhhHHHHHhccchHHHHHHh
Confidence            65 455566788899999999999874

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.60  E-value=3.8e-16  Score=140.21  Aligned_cols=95  Identities=25%  Similarity=0.386  Sum_probs=54.4

Q ss_pred             hhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCC
Q psy10739         90 CEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHP  169 (187)
Q Consensus        90 ~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nP  169 (187)
                      ..-.+|+|+++.+.+..++++... ++++.+..  +..+.+...++++++||++++|+|++.|++||++|||+||+|+||
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p   91 (510)
T 3ul1_B           15 GSGMLETAAALFERNHMDSPDLGT-DDDDLAMA--DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP   91 (510)
T ss_dssp             -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred             CcccHHHHHHHHHhhccCCccccC-Cccccchh--hhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence            344678888888888887776543 12221111  112334455789999999999999999999999999999999999


Q ss_pred             cHHHHHHcCCcccccccC
Q psy10739        170 PIDELIEAGVVPICVFQR  187 (187)
Q Consensus       170 PId~VI~aGvVP~~V~~~  187 (187)
                      |||+||++|+||+||+||
T Consensus        92 pi~~ii~~G~ip~LV~lL  109 (510)
T 3ul1_B           92 PIDNIIRAGLIPKFVSFL  109 (510)
T ss_dssp             CHHHHHHTTHHHHHHHHT
T ss_pred             hHHHHHHCCCHHHHHHHH
Confidence            999999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.54  E-value=9.3e-15  Score=114.73  Aligned_cols=128  Identities=22%  Similarity=0.300  Sum_probs=105.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      ||.|++..++.+|||+|+|++.++.+..+.++++|++|.|+.+|.+++..+|..|+|++++.+.+.++.+.         
T Consensus        20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---------   90 (210)
T 4db6_A           20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ---------   90 (210)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH---------
Confidence            78999999999999999999999999999999999999999999999999999999999888433221111         


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                            .+.+                          ...++.++..+.+.|+..+..|++.+..
T Consensus        91 ----------------------~i~~--------------------------~g~i~~L~~lL~~~~~~v~~~a~~~L~~  122 (210)
T 4db6_A           91 ----------------------AVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN  122 (210)
T ss_dssp             ----------------------HHHH--------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------------------HHHH--------------------------CCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                                  0110                          0247889999999999999999999987


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.. .....++.++++|++|.|+++|
T Consensus       123 l~~-~~~~~~~~~~~~~~i~~L~~ll  147 (210)
T 4db6_A          123 IAS-GGNEQIQAVIDAGALPALVQLL  147 (210)
T ss_dssp             HTT-SCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHc-CCHHHHHHHHHcCcHHHHHHHH
Confidence            754 3344567888999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.49  E-value=4.6e-14  Score=110.72  Aligned_cols=128  Identities=24%  Similarity=0.336  Sum_probs=104.0

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..++..|+|+|+||+.|+.++.+.+++.|.+|.|+.+|.+++..+|++|+|++++.+...++.+.         
T Consensus        62 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---------  132 (210)
T 4db6_A           62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ---------  132 (210)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence            67888999999999999999999999999999999999999999999999999999999888433211000         


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                            .+..                          ...++.++..+.++|+..+..|++.+..
T Consensus       133 ----------------------~~~~--------------------------~~~i~~L~~ll~~~~~~v~~~a~~aL~~  164 (210)
T 4db6_A          133 ----------------------AVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN  164 (210)
T ss_dssp             ----------------------HHHH--------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------------------HHHH--------------------------cCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                                  0110                          0136789999999999999999999988


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.+. ..+..+.+++.|++|.++++|
T Consensus       165 l~~~-~~~~~~~~~~~g~i~~L~~ll  189 (210)
T 4db6_A          165 IASG-GNEQKQAVKEAGALEKLEQLQ  189 (210)
T ss_dssp             HHTS-CHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHcC-CcHHHHHHHHCCCHHHHHHHH
Confidence            8753 234456678999999998874

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.39  E-value=1.2e-13  Score=122.85  Aligned_cols=169  Identities=21%  Similarity=0.263  Sum_probs=117.5

Q ss_pred             CCCCCC-cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~-~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|.+++ ..++.+|+|+|+||+.|+.++.+.++++|++|.|+.+|.+++..+|..|+|++++.+.+.+..|...... |.
T Consensus       125 lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-g~  203 (528)
T 4b8j_A          125 FLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-GA  203 (528)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-Cc
Confidence            466766 8999999999999999999999999999999999999999999999999999999977766666655442 21


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC-CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSA  159 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~-~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~  159 (187)
                       .        ...+++=+...+..+  +++..+    ....+.... ..........++.++..+.++|++.+..|++.+
T Consensus       204 -l--------~~Ll~lL~~~~~~~v--~~~a~~----~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL  268 (528)
T 4b8j_A          204 -L--------LPLLAQLNEHTKLSM--LRNATW----TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWAL  268 (528)
T ss_dssp             -H--------HHHHHTCCTTCCHHH--HHHHHH----HHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             -H--------HHHHHHHhcCCCHHH--HHHHHH----HHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence             0        111111111111111  122111    001111000 000001135689999999999999999999999


Q ss_pred             HhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        160 RKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       160 RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ..+ +...+..++.++++|+||.|+.+|
T Consensus       269 ~~l-~~~~~~~~~~~~~~g~v~~Lv~lL  295 (528)
T 4b8j_A          269 SYL-SDGTNDKIQAVIEAGVCPRLVELL  295 (528)
T ss_dssp             HHH-TSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHH-HcCCHHHHHHHHHcCHHHHHHHHH
Confidence            665 555566688999999999999875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.38  E-value=7.5e-13  Score=106.36  Aligned_cols=128  Identities=27%  Similarity=0.410  Sum_probs=103.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..++.+|+|+|+|++.|+.+..+.+++.|.+|.|+.+|.+++..+|..|+|++++.+...+ .+.         
T Consensus        62 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~---------  131 (252)
T 4db8_A           62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI---------  131 (252)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHH---------
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-hHH---------
Confidence            6788889999999999999999999999999999999999999999999999999999988833211 110         


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                           +.+.+                          ...++.++..+.++|+..+..|++.+..
T Consensus       132 ---------------------~~~~~--------------------------~~~i~~L~~lL~~~~~~v~~~a~~~L~~  164 (252)
T 4db8_A          132 ---------------------QAVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN  164 (252)
T ss_dssp             ---------------------HHHHH--------------------------TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHH--------------------------CCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                                 00110                          0136788899999999999999999977


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.+ ......+.+++.|++|.|+++|
T Consensus       165 l~~-~~~~~~~~~~~~~~i~~L~~ll  189 (252)
T 4db8_A          165 IAS-GGNEQIQAVIDAGALPALVQLL  189 (252)
T ss_dssp             HTT-SCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHc-CChHHHHHHHHCCCHHHHHHHH
Confidence            754 3344566788999999999875

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.37  E-value=3.1e-13  Score=114.76  Aligned_cols=65  Identities=11%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             CCCC-CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739          2 LLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         2 lL~~-~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      ||.+ ++..++++|+|+||||++|+..+++.++++|.+|.|+.+|.++++++|++|||++++.+..
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~  197 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  197 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            4554 4788999999999999999999999999999999999999999999999999999998554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.37  E-value=1.2e-12  Score=105.10  Aligned_cols=128  Identities=24%  Similarity=0.335  Sum_probs=104.1

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      ||.+++..++..|+|+|+||+.+...+++.+++.|++|.|+.+|.+++..++.+|+|++++.+...++.+          
T Consensus       104 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----------  173 (252)
T 4db8_A          104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI----------  173 (252)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH----------
T ss_pred             HHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH----------
Confidence            6788899999999999999999999998999999999999999999999999999999988843321100          


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                           +.+..                          ...++.++..+.+.|+..+..|++.+..
T Consensus       174 ---------------------~~~~~--------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~  206 (252)
T 4db8_A          174 ---------------------QAVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN  206 (252)
T ss_dssp             ---------------------HHHHH--------------------------TTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHH--------------------------CCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence                                 00110                          0247889999999999999999999988


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.+ ......+.+++.|++|.|+++|
T Consensus       207 l~~-~~~~~~~~~~~~g~i~~L~~ll  231 (252)
T 4db8_A          207 IAS-GGNEQKQAVKEAGALEKLEQLQ  231 (252)
T ss_dssp             HTT-SCHHHHHHHHHTTHHHHHHTTT
T ss_pred             Hhc-CCHHHHHHHHHCCcHHHHHHHh
Confidence            764 2334566788999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.37  E-value=2.8e-13  Score=128.75  Aligned_cols=129  Identities=10%  Similarity=0.065  Sum_probs=104.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      ||.|++..+++.|+|+|+||+.|+..+.+.+.++|.+|.|+.+|.+.+..+|++|||+++|.+.+.+......+.+.   
T Consensus       631 LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~---  707 (810)
T 3now_A          631 YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA---  707 (810)
T ss_dssp             HHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTST---
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHc---
Confidence            56788999999999999999999887776663489999999999999999999999999999665321111111100   


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                                                           ..++.++..+.++|++.+..|+|++..
T Consensus       708 -----------------------------------------------------g~I~~Lv~LL~s~d~~vq~~A~~aL~N  734 (810)
T 3now_A          708 -----------------------------------------------------SWLDILHTLIANPSPAVQHRGIVIILN  734 (810)
T ss_dssp             -----------------------------------------------------THHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------CCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence                                                                 126788899999999999999999999


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +++.. ...+..++++|++|.|+.+|
T Consensus       735 L~~~s-~e~~~~l~e~G~i~~L~~LL  759 (810)
T 3now_A          735 MINAG-EEIAKKLFETDIMELLSGLG  759 (810)
T ss_dssp             HHTTC-HHHHHHHHTSTHHHHHTTSC
T ss_pred             HHhCC-HHHHHHHHHCCCHHHHHHHH
Confidence            98743 34678899999999999875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.34  E-value=1.2e-12  Score=116.82  Aligned_cols=168  Identities=16%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             CCCCC-CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~-~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|.++ +..++.+|+|+|+||+.|+.++.+.+++.|++|.|+.+|.+.+..+|..|+|++++.+.+.++.|...+.. |.
T Consensus       138 ~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~~  216 (530)
T 1wa5_B          138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NA  216 (530)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc-Cc
Confidence            57776 78999999999999999999999999999999999999999999999999999999877766666554543 32


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC--CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRS  158 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~--~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~  158 (187)
                       ..        ..+++=+. .+..+  +++..+    ..+.+....  ..........++.++..+.++|+..+..|++.
T Consensus       217 -l~--------~L~~ll~~-~~~~v--~~~a~~----~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~  280 (530)
T 1wa5_B          217 -ME--------PILGLFNS-NKPSL--IRTATW----TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWA  280 (530)
T ss_dssp             -HH--------HHHHGGGS-CCHHH--HHHHHH----HHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -HH--------HHHHHhcc-CCHHH--HHHHHH----HHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence             11        12222111 11111  111110    001111000  00000112568999999999999999999999


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +..+. ....+.++.+++.|++|.|+++|
T Consensus       281 L~~L~-~~~~~~~~~~~~~~~v~~Lv~lL  308 (530)
T 1wa5_B          281 ISYLS-DGPQEAIQAVIDVRIPKRLVELL  308 (530)
T ss_dssp             HHHHH-SSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHh-CCCHHHHHHHHhcCcHHHHHHHH
Confidence            96664 44445688899999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.30  E-value=4.3e-13  Score=127.44  Aligned_cols=167  Identities=10%  Similarity=0.053  Sum_probs=111.7

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhh--------------------------------HHHHHHcCChHHHHHHhhcCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------------IDHVIQEGLLPYIVNILENGD   49 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~q--------------------------------iq~vi~~~~~p~l~~~l~~~~   49 (187)
                      ||.+++..++.+|.|+|+||+.|+..|                                ++.|+++|++|.|+.+|.+++
T Consensus       429 LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s  508 (810)
T 3now_A          429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES  508 (810)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred             HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence            567888999999999999999987422                                589999999999999999999


Q ss_pred             hhhhhhhhccccccchhhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccc----cchhhhhhccc
Q psy10739         50 AKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL----DEIEEENVTVI  125 (187)
Q Consensus        50 ~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~----~~~~~s~~~~~  125 (187)
                      ..+|++|+|++++.+.+ ++.|....+. |.=         ...+.|-+....+  . +++..+.    .....+...  
T Consensus       509 ~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~-Gai---------p~Lv~LL~s~~~~--~-k~~Aa~AL~nL~~~~~p~~~--  572 (810)
T 3now_A          509 HNSQELIARVLNAVCGL-KELRGKVVQE-GGV---------KALLRMALEGTEK--G-KRHATQALARIGITINPEVS--  572 (810)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHT-THH---------HHHHHHHHSSCHH--H-HHHHHHHHHHHHHHSCHHHH--
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHC-CCH---------HHHHHHHccCCHH--H-HHHHHHHHHHHhcCCChhhh--
Confidence            99999999999999654 4577766653 421         1223332221111  1 1222110    000000000  


Q ss_pred             CCCCCCCccCCHHHHHHHhcCC-CHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        126 EPTCMSPIKMTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       126 ~~~~~~~~~~~l~~iv~~l~S~-d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                        .........+|.++..+.++ +...+++|+++++.|.+. .+.-.+.||++|.+|+|++||
T Consensus       573 --~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL  632 (810)
T 3now_A          573 --FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYL  632 (810)
T ss_dssp             --TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHH
T ss_pred             --hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHH
Confidence              00000123689999999876 455668999999887654 233467899999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.29  E-value=3.3e-12  Score=101.59  Aligned_cols=128  Identities=25%  Similarity=0.298  Sum_probs=102.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..++.+|+|+|.|++.+..+..+.+++.|++|.|+.+|.+++..++..|+|++++.+...++.+...++.    
T Consensus        10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----   85 (252)
T 4hxt_A           10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA----   85 (252)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT----
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC----
Confidence            5788889999999999999999999999999999999999999999999999999999988844422222111110    


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                                                           ..++.++..+.++|++.+..|++.+..
T Consensus        86 -----------------------------------------------------~~i~~l~~ll~~~~~~v~~~a~~~L~~  112 (252)
T 4hxt_A           86 -----------------------------------------------------GGVEVLVKLLTSTDSEVQKEAARALAN  112 (252)
T ss_dssp             -----------------------------------------------------THHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------CCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                                                                 125678888889999999999999977


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.. ......+.+++.|++|.++++|
T Consensus       113 l~~-~~~~~~~~~~~~~~i~~L~~~l  137 (252)
T 4hxt_A          113 IAS-GPDEAIKAIVDAGGVEVLVKLL  137 (252)
T ss_dssp             HTT-SCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence            653 3334556678899999998875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.29  E-value=3.1e-12  Score=110.16  Aligned_cols=169  Identities=20%  Similarity=0.167  Sum_probs=116.2

Q ss_pred             CCCCC-CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~-~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|.++ +..++.+|+|+++||+.|+.++.+.+++.|++|.|+.+|.+++..+|..|+|++++...+.++.|...+...+.
T Consensus        72 ~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i  151 (450)
T 2jdq_A           72 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL  151 (450)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence            45666 78999999999999999999999999999999999999999999999999999988877666666555442221


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhccc--CCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI--EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRS  158 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~--~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~  158 (187)
                                +..+++-+...+..+  |++..+.    .......  ...........++.++..+.++|+..+..|++.
T Consensus       152 ----------~~L~~~l~~~~~~~v--~~~a~~~----L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  215 (450)
T 2jdq_A          152 ----------PPLLQLFSKQNRLTM--TRNAVWA----LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWA  215 (450)
T ss_dssp             ----------HHHHHHTTSCCCHHH--HHHHHHH----HHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             ----------HHHHHHhcCCCCHHH--HHHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence                      112222111011111  1111100    0000000  000011123568999999999999999999999


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ++.+. ...++.++.+++.|++|.|+.+|
T Consensus       216 L~~l~-~~~~~~~~~~~~~~~i~~L~~ll  243 (450)
T 2jdq_A          216 LSYLS-DGPNDKIQAVIDAGVCRRLVELL  243 (450)
T ss_dssp             HHHHT-SSSHHHHHHHHHTTTHHHHHHHT
T ss_pred             HHHHH-CCCcHHHHHHHHcCcHHHHHHHH
Confidence            97664 44456678888999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.28  E-value=1.6e-12  Score=115.32  Aligned_cols=141  Identities=13%  Similarity=0.062  Sum_probs=96.7

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh-cCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE-NGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~-~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      ||.++++.++.+|+|+|.||+.++++..+.++++|.+|.|+++|. +++.+++++|+|+|.+.+.. ++.|..... .+.
T Consensus        52 lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i  129 (457)
T 1xm9_A           52 LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DAL  129 (457)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccH
Confidence            688999999999999999999999999999999999999999999 88999999999999888555 333332222 110


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                                ...+++         +..         +.+...    .+ .     .++.   -...|++.+..|+|.++
T Consensus       130 ----------~~Lv~l---------l~~---------~~s~~~----~~-~-----~~~~---~e~~~~~v~~~a~~aL~  168 (457)
T 1xm9_A          130 ----------PVLADR---------VII---------PFSGWC----DG-N-----SNMS---REVVDPEVFFNATGCLR  168 (457)
T ss_dssp             ----------HHHHHH---------TTH---------HHHTCC----------------------CCCHHHHHHHHHHHH
T ss_pred             ----------HHHHHH---------Hhc---------cccccc----cC-c-----cchh---cccccHHHHHHHHHHHH
Confidence                      111111         100         000000    00 0     0000   00257888899999997


Q ss_pred             hhhcCCCCCcHHHHHHc-CCcccccccC
Q psy10739        161 KMLSKERHPPIDELIEA-GVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI~a-GvVP~~V~~~  187 (187)
                      .+-+ . ....+.|+++ |+||.||.+|
T Consensus       169 nLs~-~-~~~~~~i~~~~g~i~~Lv~lL  194 (457)
T 1xm9_A          169 NLSS-A-DAGRQTMRNYSGLIDSLMAYV  194 (457)
T ss_dssp             HHTT-S-HHHHHHHTTSTTHHHHHHHHH
T ss_pred             HHcc-C-HHHHHHHHHcCCCHHHHHHHH
Confidence            7654 3 4567778888 9999998764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.28  E-value=7.6e-12  Score=108.54  Aligned_cols=167  Identities=11%  Similarity=0.033  Sum_probs=112.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCC-ChhhHHHHHHcCChHHHHHHh-hcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLLPYIVNIL-ENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG-~~~qiq~vi~~~~~p~l~~~l-~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      ||.+++..++..|||+|+|++.| +.+..+.|+++|.+|+|+++| .+++..+++.|++++.+.+...++.+.......|
T Consensus       135 LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~G  214 (354)
T 3nmw_A          135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG  214 (354)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTT
T ss_pred             HHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcC
Confidence            78899999999999999999987 556778888999999999975 6678999999999987665533333433332223


Q ss_pred             CChHHHhhhhhhHHHHHHhhchh--------hHHhhhhcccc---ccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKD--------DQLFKRRNIDQ---LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN  148 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kre--------e~l~KrRn~~~---~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d  148 (187)
                      .         ....|++-+...+        +...--||+..   ..++......         ....++.+++.+.+++
T Consensus       215 a---------i~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~---------~~g~i~~Lv~lL~~~~  276 (354)
T 3nmw_A          215 A---------LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR---------ENNCLQTLLQHLKSHS  276 (354)
T ss_dssp             H---------HHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------TTTHHHHHHHHTTCSC
T ss_pred             c---------HHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH---------HcCCHHHHHHHHcCCC
Confidence            1         1223333222111        11111233321   0011000000         0135899999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        149 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       149 ~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ...+.+|++.++.+- ......++.++++|+||.||++|
T Consensus       277 ~~v~~~A~~aL~nLa-~~~~~~~~~i~~~G~i~~Lv~LL  314 (354)
T 3nmw_A          277 LTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLI  314 (354)
T ss_dssp             HHHHHHHHHHHHHHT-SSCHHHHHHHHHTTHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHh-CCCHHHHHHHHHCCCHHHHHHHH
Confidence            999999999998774 33445688899999999999986

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.27  E-value=6e-12  Score=103.71  Aligned_cols=126  Identities=13%  Similarity=0.074  Sum_probs=97.2

Q ss_pred             CCCCCCc--chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          2 LLSSSRV--NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         2 lL~~~~~--~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      +|.|++.  .++.+|+|+|.|++.++.+..+.|+++|.+|+|+++|.+++.++|.+|+|+|.+.+.+.++.|..... . 
T Consensus        16 lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~-~-   93 (233)
T 3tt9_A           16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAE-L-   93 (233)
T ss_dssp             TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-T-
T ss_pred             HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-c-
Confidence            7888888  89999999999999999999999999999999999999999999999999998885432222211111 0 


Q ss_pred             CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHHH
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK-SSNPKMRMIATRS  158 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~-S~d~~~ql~a~~~  158 (187)
                                                                             ..+|.+++.+. +.+++.+-.|+..
T Consensus        94 -------------------------------------------------------GaI~~Lv~lL~~~~~~~~~e~a~~a  118 (233)
T 3tt9_A           94 -------------------------------------------------------NGVPRLLQVLKQTRDLETKKQITGL  118 (233)
T ss_dssp             -------------------------------------------------------THHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             -------------------------------------------------------CCHHHHHHHHccCCCHHHHHHHHHH
Confidence                                                                   23678888887 5789999999988


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +..|-+   .+.+...|-.|.+|.||+++
T Consensus       119 L~nLS~---~~~~k~~i~~~~i~~Lv~ll  144 (233)
T 3tt9_A          119 LWNLSS---NDKLKNLMITEALLTLTENI  144 (233)
T ss_dssp             HHHHHT---SGGGHHHHHHHHHHHHCCCC
T ss_pred             HHHHHc---ChhhHHHHHhccHHHHHHHH
Confidence            866643   34444444445688888754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.27  E-value=4.6e-12  Score=112.36  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=100.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..++.+|+|+|.|++.++....+.|+++|.+|.|+.+|.+++.+++.+|+|++.+.+...++.|..        
T Consensus        10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~--------   81 (457)
T 1xm9_A           10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE--------   81 (457)
T ss_dssp             HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH--------
T ss_pred             HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH--------
Confidence            577889999999999999999988877779999999999999999999999999999998774432211111        


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHHHHH
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK-SSNPKMRMIATRSAR  160 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~-S~d~~~ql~a~~~~R  160 (187)
                                             +.  .                        ...+|.+++.+. |+|++.+..|+|.+.
T Consensus        82 -----------------------i~--~------------------------~G~i~~Lv~lL~~~~~~~~~~~a~~aL~  112 (457)
T 1xm9_A           82 -----------------------TR--R------------------------QNGIREAVSLLRRTGNAEIQKQLTGLLW  112 (457)
T ss_dssp             -----------------------HH--H------------------------TTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             -----------------------HH--H------------------------cCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence                                   10  0                        024789999998 899999999999996


Q ss_pred             hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        161 KMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .+- .. .+.-+.|++ |.+|.||.+|
T Consensus       113 nLa-~~-~~~~~~i~~-g~i~~Lv~ll  136 (457)
T 1xm9_A          113 NLS-ST-DELKEELIA-DALPVLADRV  136 (457)
T ss_dssp             HHH-TS-SSTHHHHHH-HHHHHHHHHT
T ss_pred             HHh-cC-HHhHHHHHh-ccHHHHHHHH
Confidence            654 43 334455788 9999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.26  E-value=3.6e-12  Score=109.77  Aligned_cols=129  Identities=17%  Similarity=0.201  Sum_probs=103.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..++..|+|+|+||+.|+..+.+.+++.|++|.|+.+|.+++..+|++|+|++++.+.+.+....         
T Consensus       242 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~---------  312 (450)
T 2jdq_A          242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ---------  312 (450)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred             HHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence            57788899999999999999999999999999999999999999999999999999999887433211000         


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                            .+..                          ...++.++..+.++++..+..|++.+..
T Consensus       313 ----------------------~~~~--------------------------~~~l~~L~~~l~~~~~~v~~~a~~~L~~  344 (450)
T 2jdq_A          313 ----------------------TVID--------------------------ANIFPALISILQTAEFRTRKEAAWAITN  344 (450)
T ss_dssp             ----------------------HHHH--------------------------TTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ----------------------HHHH--------------------------CCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                                  0110                          0125678888888999999999999998


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +........++.+++.|++|.|+++|
T Consensus       345 l~~~~~~~~~~~l~~~~~i~~L~~ll  370 (450)
T 2jdq_A          345 ATSGGSAEQIKYLVELGCIKPLCDLL  370 (450)
T ss_dssp             HHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred             HHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence            87654334577888999999998875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.26  E-value=7.6e-12  Score=99.48  Aligned_cols=128  Identities=25%  Similarity=0.322  Sum_probs=102.9

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..++..|+|+|+|++.++.+..+.+++.|.+|.|+.+|.+++.+++..|+|++++.+...++.+.         
T Consensus        52 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---------  122 (252)
T 4hxt_A           52 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK---------  122 (252)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred             HHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence            57888899999999999999999899999999999999999999999999999999999888433221110         


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK  161 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk  161 (187)
                                            .+..                          ...++.+++.+.++|+..+..|++.+..
T Consensus       123 ----------------------~~~~--------------------------~~~i~~L~~~l~~~~~~~~~~a~~~L~~  154 (252)
T 4hxt_A          123 ----------------------AIVD--------------------------AGGVEVLVKLLTSTDSEVQKEAARALAN  154 (252)
T ss_dssp             ----------------------HHHH--------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------------------HHHH--------------------------CCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                                  0110                          0136788889999999999999999987


Q ss_pred             hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        162 MLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       162 lLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +.. ......+.+++.|++|.|+.+|
T Consensus       155 l~~-~~~~~~~~~~~~~~i~~L~~ll  179 (252)
T 4hxt_A          155 IAS-GPDEAIKAIVDAGGVEVLVKLL  179 (252)
T ss_dssp             HTT-SCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHc-CCHHHHHHHHHCcCHHHHHHHH
Confidence            754 3333447889999999999875

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.25  E-value=7e-12  Score=108.76  Aligned_cols=107  Identities=13%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             CCCCCCc----chhHHHHHHHHHhcC---CChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739          2 LLSSSRV----NIVKEAAWTISNITA---GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS   74 (187)
Q Consensus         2 lL~~~~~----~i~kea~w~lSNI~a---G~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~   74 (187)
                      ||.+++.    .++++|||+|+|++.   |+.++.+.++++|.+|.|+.+|.++++.++++|+|+|++.+...++.+.. 
T Consensus       222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~-  300 (354)
T 3nmw_A          222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA-  300 (354)
T ss_dssp             HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH-
T ss_pred             HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHH-
Confidence            5666654    499999999999997   99999999999999999999999999999999999999884332111110 


Q ss_pred             hhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHH
Q psy10739         75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMI  154 (187)
Q Consensus        75 fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~  154 (187)
                                                    +.  +                        ...+|.+++.+.|.++..+..
T Consensus       301 ------------------------------i~--~------------------------~G~i~~Lv~LL~s~~~~i~~~  324 (354)
T 3nmw_A          301 ------------------------------LW--D------------------------MGAVSMLKNLIHSKHKMIAMG  324 (354)
T ss_dssp             ------------------------------HH--H------------------------TTHHHHHHTTTTCSSHHHHHH
T ss_pred             ------------------------------HH--H------------------------CCCHHHHHHHHhCCCHHHHHH
Confidence                                          11  0                        023678888999999999999


Q ss_pred             HHHHHHhhhcC
Q psy10739        155 ATRSARKMLSK  165 (187)
Q Consensus       155 a~~~~RklLS~  165 (187)
                      |+++++.|++.
T Consensus       325 A~~aL~nL~~~  335 (354)
T 3nmw_A          325 SAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999888864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.22  E-value=1.4e-11  Score=110.38  Aligned_cols=107  Identities=13%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             CCCCCCcc----hhHHHHHHHHHhcC---CChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739          2 LLSSSRVN----IVKEAAWTISNITA---GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS   74 (187)
Q Consensus         2 lL~~~~~~----i~kea~w~lSNI~a---G~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~   74 (187)
                      ||.+++..    ++++|||+|+||++   |+.++.+.++++|.+|.|+.+|.+++++++++|+|++++.+...++.+.. 
T Consensus       338 LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~-  416 (458)
T 3nmz_A          338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA-  416 (458)
T ss_dssp             HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHH-
T ss_pred             HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHH-
Confidence            56666553    99999999999997   99999999999999999999999999999999999998884332111110 


Q ss_pred             hhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHH
Q psy10739         75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMI  154 (187)
Q Consensus        75 fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~  154 (187)
                                                    +.  +                        ...++.+++.+.+.++..+..
T Consensus       417 ------------------------------i~--~------------------------~G~I~~Lv~LL~s~~~~v~~~  440 (458)
T 3nmz_A          417 ------------------------------LW--D------------------------MGAVSMLKNLIHSKHKMIAMG  440 (458)
T ss_dssp             ------------------------------HH--H------------------------HTHHHHHHTTTTCSSHHHHHH
T ss_pred             ------------------------------HH--H------------------------CCCHHHHHHHHhCCCHHHHHH
Confidence                                          11  0                        013678888899999999999


Q ss_pred             HHHHHHhhhcC
Q psy10739        155 ATRSARKMLSK  165 (187)
Q Consensus       155 a~~~~RklLS~  165 (187)
                      |+++++.|++.
T Consensus       441 Aa~AL~nL~~~  451 (458)
T 3nmz_A          441 SAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcC
Confidence            99999999874

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.21  E-value=3.5e-11  Score=105.84  Aligned_cols=147  Identities=14%  Similarity=0.192  Sum_probs=91.6

Q ss_pred             CCCCCC-cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~-~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|.+++ ..++++|||+|+||++|+..| +.++++|++|.|+++|.++++++|+||+|++++..          |-. |.
T Consensus       363 lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~----------~~~-~~  430 (529)
T 1jdh_A          363 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------FVE-GV  430 (529)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC---------------------CBT-TB
T ss_pred             HhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchh----------hhc-cc
Confidence            677776 489999999999999998877 78899999999999999999999999999998721          111 22


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                      ..++.+.   ...--|..--++.             +......         ....++.++..+.+.+++.+..|++.+.
T Consensus       431 ~~~~i~~---~~~~al~~L~~~~-------------~~~~~l~---------~~~~v~~l~~ll~~~~~~v~~~a~~~l~  485 (529)
T 1jdh_A          431 RMEEIVE---GCTGALHILARDV-------------HNRIVIR---------GLNTIPLFVQLLYSPIENIQRVAAGVLC  485 (529)
T ss_dssp             CHHHHHH---HHHHHHHHHTTSH-------------HHHHHHH---------HTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             cHHHHHH---HHHHHHHHHhcCc-------------hHHHHHh---------ccCCccHHHHHHcCCchHHHHHHHHHHH
Confidence            3333321   1111111111100             0000000         0135789999999999999999999998


Q ss_pred             hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        161 KMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .+..  .++-...+.++|.++.|.+++
T Consensus       486 ~l~~--~~~~~~~i~~~~~~~~L~~l~  510 (529)
T 1jdh_A          486 ELAQ--DKEAAEAIEAEGATAPLTELL  510 (529)
T ss_dssp             HHTT--SHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHhc--CHHHHHHHHHcCChHHHHHHh
Confidence            7653  223344456789999987753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.16  E-value=5e-11  Score=106.82  Aligned_cols=167  Identities=11%  Similarity=0.036  Sum_probs=111.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCC-ChhhHHHHHHcCChHHHHHHh-hcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLLPYIVNIL-ENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG-~~~qiq~vi~~~~~p~l~~~l-~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      ||.+++..++..|||+|+|++.| +.+..+.|+++|.+|+|+++| .+++..+++.|+.++.+.+...++.+.......|
T Consensus       251 LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G  330 (458)
T 3nmz_A          251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG  330 (458)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence            78889999999999999999997 566778888999999999975 5678899999988887765533333433332233


Q ss_pred             CChHHHhhhhhhHHHHHHhhchh--------hHHhhhhcccc---ccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKD--------DQLFKRRNIDQ---LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN  148 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kre--------e~l~KrRn~~~---~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d  148 (187)
                      .         ....+++-+...+        +...--||+..   ...+......         ....++.+++.+.+++
T Consensus       331 a---------l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~---------~~G~i~~Lv~LL~~~~  392 (458)
T 3nmz_A          331 A---------LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR---------ENNCLQTLLQHLKSHS  392 (458)
T ss_dssp             H---------HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------HTTHHHHHHHHSSCSC
T ss_pred             c---------HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH---------HcccHHHHHHHHcCCC
Confidence            1         1222333221111        11122233321   0011000000         0145899999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        149 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       149 ~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .+.+.+|+++++.+-+ ....-++.|+++|+||.||++|
T Consensus       393 ~~v~~~A~~aL~nLa~-~~~~~~~~i~~~G~I~~Lv~LL  430 (458)
T 3nmz_A          393 LTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLI  430 (458)
T ss_dssp             HHHHHHHHHHHHHHHS-SCHHHHHHHHHHTHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999988754 3345577889999999999986

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.14  E-value=3.7e-11  Score=110.68  Aligned_cols=126  Identities=15%  Similarity=0.098  Sum_probs=98.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh-hhhHhhhhhhccCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV-AAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~-~~~~R~~~fKn~g~   80 (187)
                      +|.+++..++.+|+|+|.|+|.++.++.+.|+++|.+|+|+.+|.+++.++|.+|+|+|.+.+.. .++.|....+    
T Consensus        56 ~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~----  131 (584)
T 3l6x_A           56 MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN----  131 (584)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH----
T ss_pred             HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH----
Confidence            68889999999999999999999999999999999999999999999999999999999888432 1211111100    


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKS-SNPKMRMIATRSA  159 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S-~d~~~ql~a~~~~  159 (187)
                                                                           ...++.++..+.+ .+.+.+..|+.++
T Consensus       132 -----------------------------------------------------~GaIp~LV~LL~s~~~~~~~e~aa~aL  158 (584)
T 3l6x_A          132 -----------------------------------------------------CDGVPALVRLLRKARDMDLTEVITGTL  158 (584)
T ss_dssp             -----------------------------------------------------TTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             -----------------------------------------------------cCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                                                                 0236788888887 6888899999888


Q ss_pred             HhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        160 RKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       160 RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ..| |.  +|.....|-.|.||.||++|
T Consensus       159 ~nL-S~--~~~~k~~I~~~alp~Lv~LL  183 (584)
T 3l6x_A          159 WNL-SS--HDSIKMEIVDHALHALTDEV  183 (584)
T ss_dssp             HHH-TT--SGGGHHHHHHHTHHHHHHHT
T ss_pred             HHH-hC--CchhhHHHHhccHHHHHHHH
Confidence            555 54  56666655566699998754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=106.24  Aligned_cols=146  Identities=16%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             CCCCCC-cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~-~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      ||.+++ ..++++|||+|+||++|+..| +.++++|++|.|+++|.++++++|+||+|++++..          |- .|.
T Consensus       360 lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~----------~~-~~~  427 (644)
T 2z6h_A          360 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------FV-EGV  427 (644)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC--------------------C-CSS
T ss_pred             HhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccch----------hc-ccc
Confidence            677775 589999999999999998887 89999999999999999999999999999998721          11 122


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                      +.++.+.   ...--|+.--++....  .           ...         ....++.++..+.+.+++.+..|++.+.
T Consensus       428 ~~~~v~~---~a~~aL~~La~~~~~~--~-----------~l~---------~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  482 (644)
T 2z6h_A          428 RMEEIVE---GCTGALHILARDVHNR--I-----------VIR---------GLNTIPLFVQLLYSPIENIQRVAAGVLC  482 (644)
T ss_dssp             CHHHHHH---HHHHHHHHHTTSHHHH--H-----------HHH---------HTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cHHHHHH---HHHHHHHHHhcCHHHH--H-----------HHH---------hCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3333321   1222222211221000  0           000         0135889999999999999999999998


Q ss_pred             hhhcCCCCCcHHHHH-HcCCcccccccC
Q psy10739        161 KMLSKERHPPIDELI-EAGVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI-~aGvVP~~V~~~  187 (187)
                      .+..   +++...+| ++|.++.|++++
T Consensus       483 ~l~~---~~~~~~~i~~~g~l~~L~~ll  507 (644)
T 2z6h_A          483 ELAQ---DKEAAEAIEAEGATAPLTELL  507 (644)
T ss_dssp             HHHT---SHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHc---CHHHHHHHHHcCChhHHHHHH
Confidence            8653   35666655 579999988764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.10  E-value=1.9e-10  Score=108.42  Aligned_cols=146  Identities=16%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             CCCCCCc-chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSSRV-NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~~-~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      ||.+++. .++++|||+|+||++|+..+ +.++++|++|.|+++|.++++++|+||+|++++..          |-. |.
T Consensus       496 lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~----------~~~-~~  563 (780)
T 2z6g_A          496 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------FVE-GV  563 (780)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------C----------CST-TC
T ss_pred             HhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch----------hhc-cc
Confidence            6777775 89999999999999988777 78899999999999999999999999999988721          221 22


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                      ..++.+.   ...--|..--++...   |          ....         ....++.+++.+.+.++..+..|+..+.
T Consensus       564 ~~~~v~~---~a~~aL~~La~~~~~---~----------~~l~---------~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  618 (780)
T 2z6g_A          564 RMEEIVE---ACTGALHILARDIHN---R----------IVIR---------GLNTIPLFVQLLYSPIENIQRVAAGVLC  618 (780)
T ss_dssp             CHHHHHH---HHHHHHHHHTTSHHH---H----------HHHH---------HTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             ChHHHHH---HHHHHHHHHhcChhh---H----------HHHH---------HCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3344322   122222221111100   0          0000         0135899999999999999999999998


Q ss_pred             hhhcCCCCCcHHHHH-HcCCcccccccC
Q psy10739        161 KMLSKERHPPIDELI-EAGVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI-~aGvVP~~V~~~  187 (187)
                      .+.   .+++....| ++|.++.|+.++
T Consensus       619 ~L~---~~~~~~~~i~~~g~i~~L~~Ll  643 (780)
T 2z6g_A          619 ELA---QDKEAAEAIEAEGATAPLTELL  643 (780)
T ss_dssp             HHH---TSHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHh---cCHHHHHHHHHCCCHHHHHHHH
Confidence            775   246666655 679999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.87  E-value=2.2e-09  Score=94.27  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=99.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC--ChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~--~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      ||.+++..++..|||+|+|++.++.+..+.+++.|.+|.|+++|.+.  +.+++..|+|++++.+...+           
T Consensus       274 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~-----------  342 (529)
T 1jdh_A          274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-----------  342 (529)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-----------
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc-----------
Confidence            56788899999999999999999999999999999999999999863  37999999999988854321           


Q ss_pred             CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC-HHHHHHHHHH
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN-PKMRMIATRS  158 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d-~~~ql~a~~~  158 (187)
                       +.+..|.       .         +.  .                        ...++.++..+.+.+ +..+..|++.
T Consensus       343 -~~~~~~~-------~---------i~--~------------------------~~~i~~L~~lL~~~~~~~v~~~a~~~  379 (529)
T 1jdh_A          343 -EAEMAQN-------A---------VR--L------------------------HYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             -THHHHHH-------H---------HH--H------------------------TTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             -hHHHHHH-------H---------HH--H------------------------cCChhHHHHHhccccchHHHHHHHHH
Confidence             1011110       0         10  0                        013678888888876 6899999999


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ++.+...  ++.-+.+++.|++|.|+++|
T Consensus       380 l~nl~~~--~~~~~~~~~~~~i~~L~~ll  406 (529)
T 1jdh_A          380 IRNLALC--PANHAPLREQGAIPRLVQLL  406 (529)
T ss_dssp             HHHHTTS--GGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHhcC--hhhhHHHHHcCCHHHHHHHH
Confidence            9888653  33456788999999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.77  E-value=3.9e-09  Score=96.61  Aligned_cols=130  Identities=19%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-C-hhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-D-AKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~-~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      ||.+++..++..|||+|+|++.++.+..+.+++.|.+|.|+.+|.+. + ..++..|+|++++.+...+           
T Consensus       271 lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~-----------  339 (644)
T 2z6h_A          271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-----------  339 (644)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-----------
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc-----------
Confidence            57788899999999999999999999999999999999999999874 3 7999999999988854321           


Q ss_pred             CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC-HHHHHHHHHH
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN-PKMRMIATRS  158 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d-~~~ql~a~~~  158 (187)
                       +.+..+       ..++.                                   ...++.+++.+.+.+ +..+..|++.
T Consensus       340 -~~~~~q-------~~v~~-----------------------------------~~~l~~L~~lL~~~~~~~v~~~a~~~  376 (644)
T 2z6h_A          340 -EAEMAQ-------NAVRL-----------------------------------HYGLPVVVKLLHPPSHWPLIKATVGL  376 (644)
T ss_dssp             -THHHHH-------HHHHH-----------------------------------TTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             -hHHHHH-------HHHHH-----------------------------------ccChHHHHHHhCccCchHHHHHHHHH
Confidence             100000       00100                                   012567888887764 7899999999


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ++.+....  .-.+.+++.|+||.||++|
T Consensus       377 L~nLa~~~--~~~~~i~~~~~i~~Lv~lL  403 (644)
T 2z6h_A          377 IRNLALCP--ANHAPLREQGAIPRLVQLL  403 (644)
T ss_dssp             HHHHTTSG--GGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHccCH--HHHHHHHHcCCHHHHHHHH
Confidence            98886532  2337788999999998764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.74  E-value=6.6e-09  Score=85.46  Aligned_cols=62  Identities=13%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh-cCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE-NGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~-~~~~~vr~ea~w~l~~~   63 (187)
                      ||.+++..++.+|+|+|.||+.|+.++..+|+++|.+|+|+++|. +++.++++.|+.+|.+.
T Consensus        60 lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL  122 (233)
T 3tt9_A           60 LLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL  122 (233)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999998 57999999999554333

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.70  E-value=7.2e-09  Score=97.64  Aligned_cols=130  Identities=19%  Similarity=0.187  Sum_probs=97.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc-CC-hhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-GD-AKVQKEAAINTKMSQKVAAIDRKASFKNAG   79 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~-~~-~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g   79 (187)
                      ||.+++..++..|||+|+||+.++.+..+.+++.|.+|.|+.+|.+ .+ .+++..|+|+|++.+...+           
T Consensus       407 lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~-----------  475 (780)
T 2z6g_A          407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-----------  475 (780)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST-----------
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc-----------
Confidence            5778889999999999999999999999999999999999999987 34 3899999999988843211           


Q ss_pred             CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCH-HHHHHHHHH
Q psy10739         80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNP-KMRMIATRS  158 (187)
Q Consensus        80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~-~~ql~a~~~  158 (187)
                       +.+..+.       .         +.   .                       ...++.++..+.+.+. ..+..|++.
T Consensus       476 -~~~~~~~-------~---------v~---~-----------------------~~~l~~L~~lL~~~~~~~v~~~A~~a  512 (780)
T 2z6g_A          476 -DAEMAQN-------A---------VR---L-----------------------HYGLPVVVKLLHPPSHWPLIKATVGL  512 (780)
T ss_dssp             -THHHHHH-------H---------HH---H-----------------------TTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             -hHHHHHH-------H---------HH---H-----------------------cCCHHHHHHHhcCCChHHHHHHHHHH
Confidence             1000000       0         00   0                       0236788888887774 889999999


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ++.+...  ++.-..+++.|+||.||++|
T Consensus       513 L~nLa~~--~~~~~~i~~~g~i~~Lv~lL  539 (780)
T 2z6g_A          513 IRNLALC--PANHAPLREQGAIPRLVQLL  539 (780)
T ss_dssp             HHHHHSS--HHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHhcC--HHHHHHHHHCCCHHHHHHHH
Confidence            9888642  22235677899999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=98.61  E-value=3.3e-08  Score=91.02  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=62.8

Q ss_pred             CCCCCC--------cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC--ChhhhhhhhccccccchhhhhHh
Q psy10739          2 LLSSSR--------VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAAINTKMSQKVAAIDR   71 (187)
Q Consensus         2 lL~~~~--------~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~--~~~vr~ea~w~l~~~t~~~~~~R   71 (187)
                      ||.+++        ..+...|||+|+||++|+.++.+.|+++|.+|.|+.+|.+.  ...+++.|+|++++....+.  =
T Consensus       403 LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e--l  480 (584)
T 3l6x_A          403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE--L  480 (584)
T ss_dssp             TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH--H
T ss_pred             HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH--H
Confidence            566653        46789999999999999999999999999999999999986  78999999999987755532  2


Q ss_pred             hhhhhccCC
Q psy10739         72 KASFKNAGK   80 (187)
Q Consensus        72 ~~~fKn~g~   80 (187)
                      +..||+.|.
T Consensus       481 r~~~kk~G~  489 (584)
T 3l6x_A          481 RKPLEKEGW  489 (584)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHcCC
Confidence            334554454

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.94  E-value=6.6e-06  Score=77.82  Aligned_cols=123  Identities=12%  Similarity=0.176  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHhcCCCh---hhH-HHHHHc-CChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHHH
Q psy10739         11 VKEAAWTISNITAGNS---RQI-DHVIQE-GLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEM   85 (187)
Q Consensus        11 ~kea~w~lSNI~aG~~---~qi-q~vi~~-~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~   85 (187)
                      ++||..+|+|+|+++.   +-+ +.++.. |.+|.|.++|.+.+..+|+.|||+++|.+. .++.+-+.|-+.+ ++   
T Consensus       576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~-~~---  650 (778)
T 3opb_A          576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLE-NP---  650 (778)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCS-SH---
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhc-Cc---
Confidence            8899999999999863   223 567885 999999999999999999999999988855 3333323333221 00   


Q ss_pred             hhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcC
Q psy10739         86 RRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK  165 (187)
Q Consensus        86 RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~  165 (187)
                                             |+.                       ..++.++..+.++|++.+..|++++.-+-| 
T Consensus       651 -----------------------~~~-----------------------~rL~lLV~Ll~s~D~~~r~AAagALAnLts-  683 (778)
T 3opb_A          651 -----------------------QSL-----------------------RNFNILVKLLQLSDVESQRAVAAIFANIAT-  683 (778)
T ss_dssp             -----------------------HHH-----------------------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-
T ss_pred             -----------------------hhh-----------------------ccHHHHHHHHcCCCHHHHHHHHHHHHHhcC-
Confidence                                   000                       015677888888999999999988844433 


Q ss_pred             CCCCcH-HHHHHc-CCccccccc
Q psy10739        166 ERHPPI-DELIEA-GVVPICVFQ  186 (187)
Q Consensus       166 e~nPPI-d~VI~a-GvVP~~V~~  186 (187)
                       .+|+| +.+.+. |.+..++.+
T Consensus       684 -~~~~ia~~ll~~~~gi~~Ll~l  705 (778)
T 3opb_A          684 -TIPLIAKELLTKKELIENAIQV  705 (778)
T ss_dssp             -HCHHHHHHHTTCHHHHHHHHHH
T ss_pred             -CChHHHHHHHHccccHHHHHHH
Confidence             25666 555554 555555543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.85  E-value=3.7e-06  Score=79.54  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhH-HHHHHcC------ChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEG------LLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS   74 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qi-q~vi~~~------~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~   74 (187)
                      ||.+++..|++.|||+|+|+++ +++++ +.+++.+      -++.|+.++..+|+++|+.|+|+++|.+...+......
T Consensus       614 LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l  692 (778)
T 3opb_A          614 LMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL  692 (778)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            6778889999999999999998 45555 5665433      37889999999999999999999999976554444444


Q ss_pred             hh
Q psy10739         75 FK   76 (187)
Q Consensus        75 fK   76 (187)
                      +.
T Consensus       693 l~  694 (778)
T 3opb_A          693 LT  694 (778)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.44  E-value=4.6e-05  Score=70.75  Aligned_cols=63  Identities=16%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHH-HHHhhcCChhhhhhhhccccccchh
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYI-VNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l-~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      |.|++...|..|||+|+||+.+ +...+.++..|+++.+ ..+|.+.+.+||.+|+|++.+.+..
T Consensus        43 L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           43 LKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             HSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999975 4555567777777765 5568889999999999999887644

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.14  E-value=0.00013  Score=53.14  Aligned_cols=23  Identities=13%  Similarity=0.037  Sum_probs=12.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHH
Q psy10739        138 PEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus       138 ~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                      +.++..+.+.|+.....|++++.
T Consensus       107 ~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A          107 AAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHH
Confidence            34445555556666666655543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.98  E-value=0.0037  Score=47.86  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=43.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +|.+++..+|..|+|+|..+..           .+.+|.|+.+|.+++..+|..|+|+++...
T Consensus        22 ~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~   73 (201)
T 3ltj_A           22 NLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG   73 (201)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence            5788999999999999998753           356788899998889999999999987653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.75  E-value=0.00035  Score=59.50  Aligned_cols=64  Identities=13%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      +|.+++..+|..|++++++|+.|.. ++++..+ ..++|.|+..|.+.++.||..|||+++.....
T Consensus       374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            3677888899999999999999865 4443333 57899999999999999999999999777443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.75  E-value=0.00032  Score=51.08  Aligned_cols=54  Identities=26%  Similarity=0.298  Sum_probs=46.1

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      +|.+++..+|..|+|+|+++..           ...+|.|+.+|.+.+..||.+|+|+++.....
T Consensus        50 ~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~  103 (131)
T 1te4_A           50 SLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE  103 (131)
T ss_dssp             GGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH
T ss_pred             HHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence            5788999999999999999963           22478999999999999999999999776643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.73  E-value=0.00032  Score=65.68  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      +|.+++..+|..|+|++++|+.|..+++... -.+++|.|+..|.+.+..||..|+|+++..+..
T Consensus       367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          367 LLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999998877643 356899999999999999999999999876554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.69  E-value=0.0052  Score=47.38  Aligned_cols=52  Identities=19%  Similarity=0.208  Sum_probs=41.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +|.+++..++..|+|+|+++..           .+.+|.|+.+|.+.+..||..|+|+++...
T Consensus        58 ~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~  109 (211)
T 3ltm_A           58 ALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG  109 (211)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4678888899999999998852           356788888888888888888888886653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.63  E-value=0.0044  Score=47.41  Aligned_cols=51  Identities=20%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +|.+++..++..|+|+|+++..           .+.+|.|+.+|.+.+..+|..|+|+++..
T Consensus        53 ~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  103 (201)
T 3ltj_A           53 ALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQI  103 (201)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            4678899999999999999852           25688999999999999999999999765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.62  E-value=0.00082  Score=60.93  Aligned_cols=63  Identities=14%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA   67 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~   67 (187)
                      +|.|+++.||+.|+|++.+|+..+++.+   -+.+++|.|..+|.+.+..|+..|+++++......
T Consensus       129 ~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          129 CLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence            5778889999999999999987766644   34678899999999889999999999987664443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.50  E-value=0.0003  Score=65.85  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      +|.++++.+|..|||++++++.....+.....-.+++|.|+..|...+..||..|+|++++....
T Consensus       408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999975433322233456789999999888999999999999776543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.49  E-value=0.0058  Score=47.07  Aligned_cols=142  Identities=15%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      +|.+++..+|..|++.|+.+..           .+.+|.|+.+|.+.+..+|..|+|+++.......-.....+-+ ..|
T Consensus        27 ~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-~~~   94 (211)
T 3ltm_A           27 NLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK-DED   94 (211)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSS
T ss_pred             HHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-CCC
Confidence            5788999999999999999753           3678999999999999999999999976643222222222221 112


Q ss_pred             hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhccc--CCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI--EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSA  159 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~--~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~  159 (187)
                       ...|.   ...--|.+....+.+..-...  +.+... .....  ..-........++.++..+.+.|+.....|++++
T Consensus        95 -~~vr~---~a~~aL~~~~~~~~~~~L~~~--l~d~~~-~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL  167 (211)
T 3ltm_A           95 -GWVRQ---SAAVALGQIGDERAVEPLIKA--LKDEDW-FVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL  167 (211)
T ss_dssp             -HHHHH---HHHHHHHHHCCGGGHHHHHHH--TTCSSH-HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             -HHHHH---HHHHHHHHhCcHHHHHHHHHH--HhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence             23332   222233322222111110000  000000 00000  0000000123578888888888999999999888


Q ss_pred             Hhh
Q psy10739        160 RKM  162 (187)
Q Consensus       160 Rkl  162 (187)
                      .++
T Consensus       168 ~~~  170 (211)
T 3ltm_A          168 GEI  170 (211)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            776

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=96.19  E-value=0.0036  Score=50.41  Aligned_cols=54  Identities=9%  Similarity=0.007  Sum_probs=25.3

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK   61 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~   61 (187)
                      +.+++..++..|+|+|+++..+......     .++|.|+.+|.+.+..||..|+|+++
T Consensus       100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~  153 (280)
T 1oyz_A          100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAIS  153 (280)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            3455566666666666666533321111     12344444444444444444444443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=95.70  E-value=0.0079  Score=55.41  Aligned_cols=63  Identities=13%  Similarity=0.218  Sum_probs=52.5

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV   66 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~   66 (187)
                      |.+++..+|..|+|++++|+.|.. +.+...+ .+++|.|+..|.+.++.||..|+|+++.....
T Consensus       375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            567788899999999999999876 5565443 55899999999999999999999999766443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=95.61  E-value=0.0038  Score=50.30  Aligned_cols=52  Identities=8%  Similarity=-0.022  Sum_probs=43.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +|.+++..+|..|+|+|+++..           .+.+|.|+.+|.+.+..+|..|+|+++...
T Consensus        31 ~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~   82 (280)
T 1oyz_A           31 LLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK   82 (280)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred             HHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            4778899999999999999962           245788899999999999999999986653

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=94.90  E-value=0.016  Score=34.57  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             hhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhc
Q psy10739         71 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN  110 (187)
Q Consensus        71 R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn  110 (187)
                      |...||+++...++-.|||+  .+++-|.+|-+.++.-|+
T Consensus         3 R~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            3 RLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred             cHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence            77889999877777777777  799999999988776553

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=94.37  E-value=0.024  Score=52.10  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK   65 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~   65 (187)
                      |.+++..+|..|+|++++|+.|.. +.+...++ .++|.|+..|.+.+..||..|+|+++....
T Consensus       378 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T 2bpt_A          378 ITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            567778899999999999999864 66665554 589999999999999999999999875543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=94.21  E-value=0.19  Score=45.32  Aligned_cols=62  Identities=23%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCC---ChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK   65 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG---~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~   65 (187)
                      +|+|.+..|+.||+|++.+++.+   +++.++.++ ..+.+.|+.+++ .+..+|.-|+.+++....
T Consensus       247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~  311 (591)
T 2vgl_B          247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ  311 (591)
T ss_dssp             CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence            68899999999999999999853   345566554 456788887765 789999999999866543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.86  E-value=0.072  Score=51.55  Aligned_cols=62  Identities=16%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhH
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAID   70 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~   70 (187)
                      |+++.++.+|.-|+|++..|++|+..  ..+|     ..|..+++..+..||.-|+.++++.-.+..+.
T Consensus       620 L~~~~d~~VR~gAalALGli~aGn~~--~~ai-----d~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          620 LSKSHNAHVRCGTAFALGIACAGKGL--QSAI-----DVLDPLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTSSSCC--HHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             HHhcCCHHHHHHHHHHHHHhccCCCc--HHHH-----HHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence            56678899999999999999999874  3343     35667778889999999999999887666555

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=92.58  E-value=0.08  Score=48.93  Aligned_cols=47  Identities=9%  Similarity=0.068  Sum_probs=41.3

Q ss_pred             CCCCCCCcchhHHHHHHHHHhcC-CChhhHHHHHHcCChHHHHHHhhc
Q psy10739          1 SLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILEN   47 (187)
Q Consensus         1 ~lL~~~~~~i~kea~w~lSNI~a-G~~~qiq~vi~~~~~p~l~~~l~~   47 (187)
                      .||.+++..|+.+|+|++.|++. |..+-...++..|++|+|..+|..
T Consensus        83 ~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~  130 (684)
T 4gmo_A           83 ETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKA  130 (684)
T ss_dssp             TTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHh
Confidence            37888999999999999999985 457777889999999999999864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=92.22  E-value=0.017  Score=53.15  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhH-HHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qi-q~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +|.+++..+|..|||++++++......+ ..-.-..++|.|+..|.+. ..+|..|+|+++...
T Consensus       416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~  478 (876)
T 1qgr_A          416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence            3567788999999999999997654432 0011135678888888774 899999999986654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=91.98  E-value=0.12  Score=41.70  Aligned_cols=75  Identities=7%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCCh---hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFK   76 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~---~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fK   76 (187)
                      .|.|++..+|.+++.+|+.++.-..   .+....+...++|.|..+|...+..||..|.=+++-.....++.....|-
T Consensus       154 ~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l  231 (249)
T 2qk1_A          154 HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL  231 (249)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHH
T ss_pred             HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3678889999999999888874333   45555555689999999999999999998888876665444444455554

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=91.36  E-value=0.12  Score=45.09  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=48.7

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHH-HHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDH-VIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~-vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +|.+++..+|..|+++++.++.+-...... ..-..++|.+..++.+.+..||..|+|+++...
T Consensus       289 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            456778889999999999998654433221 234567899999999999999999999987664

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=88.71  E-value=0.54  Score=36.86  Aligned_cols=74  Identities=16%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCC-Chhh-HHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAG-NSRQ-IDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFK   76 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG-~~~q-iq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fK   76 (187)
                      .|.|.++.+|.+++-.|+.+.+- ++++ ....+. .++|.|+.+|.+.+.+||..|.=+++......++.-...|-
T Consensus       141 ~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l  216 (242)
T 2qk2_A          141 SLSNKNPSVKSETALFIARALTRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL  216 (242)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred             HHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            36788889999999999996543 2332 223333 68999999999999999999888876654444444455554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=88.14  E-value=0.39  Score=43.58  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK   65 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~   65 (187)
                      |.|+++.++--|.++|++|..  .+-+     ..++|.+..+|.+.+..||+-|+++++....
T Consensus       116 L~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~  171 (618)
T 1w63_A          116 LNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIR  171 (618)
T ss_dssp             HSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            568889999999999999973  3322     3567888999999999999999999865533

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=87.63  E-value=0.071  Score=48.92  Aligned_cols=62  Identities=16%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhH-HHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qi-q~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      .|.++++.+|..|+|++++++..-..++ ..-.-..++|.|+..|.+. ..+|..|||+++...
T Consensus       419 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~  481 (861)
T 2bpt_A          419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV  481 (861)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            3567788999999999999986422211 0001123578888888775 899999999986543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=87.46  E-value=0.23  Score=43.19  Aligned_cols=56  Identities=7%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT   60 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l   60 (187)
                      +|.+++..+|..|+.++++++..-..+.   .-..++|.|..++.+.++.+|..++|++
T Consensus       449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~~~~~~~~R~~a~~~l  504 (588)
T 1b3u_A          449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCI  504 (588)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            4666777788888888888865422221   1245677787777777888888888764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=86.23  E-value=0.079  Score=48.21  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA   67 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~   67 (187)
                      +|.|+++.+||-|++++.+|..+.++.++     ++++.+..+|...++.|+--|+++++-.....
T Consensus       150 ~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          150 LLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence            46788999999999999999998887664     68899999999999999999999986654433

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=84.10  E-value=0.45  Score=44.17  Aligned_cols=68  Identities=7%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHH-Hc-CChHHHHHHhhcCChhhhhhhhccccccchhhhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVI-QE-GLLPYIVNILENGDAKVQKEAAINTKMSQKVAAI   69 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi-~~-~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~   69 (187)
                      ||.+.+..+|.-|.-.|+.++.+..+.+|..| ++ +-+|.|+++|+.....+|.||.-.+...+.+.++
T Consensus       130 lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~  199 (651)
T 3grl_A          130 LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA  199 (651)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence            67888899999999999999999999888877 34 8999999999999999999999998777766554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=81.46  E-value=0.43  Score=45.33  Aligned_cols=53  Identities=17%  Similarity=0.142  Sum_probs=41.1

Q ss_pred             CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      .+-+|.-|||+++.++.--.    .-.-..++|.++..|.+.+..||..||||+..-
T Consensus       471 ~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~  523 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITIEKI  523 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            67899999999999986421    112234678888888888899999999998663

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=80.79  E-value=1  Score=41.79  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=40.9

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHc-CChHHHHHHhhcCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GLLPYIVNILENGD   49 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~-~~~p~l~~~l~~~~   49 (187)
                      +|.+++..||-||.-.|++++.|+.+ ||.++.. |.++.|++++....
T Consensus       174 lL~d~rE~iRneallLL~~Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg  221 (651)
T 3grl_A          174 LLADSREVIRNDGVLLLQALTRSNGA-IQKIVAFENAFERLLDIITEEG  221 (651)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHHT
T ss_pred             HHhCchHHHHHHHHHHHHHHhcCCHH-HHHHHHHhccHHHHHHHHHhcC
Confidence            67888999999999999999998654 8888875 99999999997644

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=80.18  E-value=0.38  Score=40.43  Aligned_cols=62  Identities=6%  Similarity=0.004  Sum_probs=47.8

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +.+++..+++.+|+++..++....+.+...+..+++|.++..+.+.+.+++..|++.++...
T Consensus       226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~  287 (462)
T 1ibr_B          226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (462)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            46678899999999999998655544433333377888888888889999999999876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-26
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.001
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.002
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.002
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 5e-26
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 6/123 (4%)

Query: 71  RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDE-----IEEENVTV 124
           R+ +FKN G+ S DE+RR+R    VELRKA +D+ L KRRN     +      E+E+   
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 125 IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
            +    S ++  +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 185 FQR 187
              
Sbjct: 126 EFM 128

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 4   SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            +    +  EAAW ++NI +G S Q   V+    +P  + +L  G  +V+++A 
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 24/125 (19%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSR---QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LL  +     KEA W ISN ++G  +    I +++ +G +  + ++LE  D ++ +   
Sbjct: 379 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 438

Query: 58  INTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN--IDQLD 115
              +   K+   D++A   N  ++ D + +      +   + +++D+++++    I+   
Sbjct: 439 DALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 498

Query: 116 EIEEE 120
             EE+
Sbjct: 499 GEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.2 bits (144), Expect = 1e-11
 Identities = 21/55 (38%), Positives = 40/55 (72%)

Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
              +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V
Sbjct: 8   QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 8e-04
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 2   LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61
           L  +    I  E+AW ++NI +G S Q   V+  G +P  +++L +  A + ++A     
Sbjct: 65  LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 124

Query: 62  M 62
            
Sbjct: 125 N 125

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 1   SLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            +LS +     KEAAW I+N T+ G   QI +++  G++  ++N+L   D K+ +   
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 1  SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LSS         A+ I +    +      V Q G +  +V++L + +  VQ+ AA
Sbjct: 9  QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 1   SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
            LL S   NI + AA  +  + A +    + +  EG    +  +L + +  V   AA
Sbjct: 467 QLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.86
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.35
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.19
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.14
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.03
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.34
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.07
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.01
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	94.41
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	93.6
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	92.14
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	91.91
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	87.12
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	86.12
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	82.33
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	81.95

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.4e-23  Score=182.72  Aligned_cols=121  Identities=36%  Similarity=0.521  Sum_probs=84.5

Q ss_pred             hhhHhhhhhhccCC-ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhccc-----CCCCCCCccCCHHHH
Q psy10739         67 AAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI-----EPTCMSPIKMTVPEM  140 (187)
Q Consensus        67 ~~~~R~~~fKn~g~-d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~-----~~~~~~~~~~~l~~i  140 (187)
                      .|++|++.||++|+ |++|+||||++..|||||+|||+.|.|||++....+...++...+     ...........++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            47899999999997 999999999999999999999999999998643211111111100     001112234789999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        141 IEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       141 v~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +++++|+|++.++.|+..+|++||.+.+|||+.+|++|++|.||.+|
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l  128 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM  128 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=4.7e-13  Score=115.39  Aligned_cols=168  Identities=17%  Similarity=0.194  Sum_probs=116.7

Q ss_pred             CCCC-CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~-~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|.+ .+..++.+|+|+|+||+.|+..++..+++.|++|.|+.+|.+++.+++..|+|++++.+...++.|...+.. |.
T Consensus       127 ~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~-~~  205 (503)
T d1wa5b_         127 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NA  205 (503)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhh-cc
Confidence            4554 456799999999999999999999999999999999999999999999999999998877777777776664 32


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcc--cCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV--IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRS  158 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~--~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~  158 (187)
                      - ..+        +.+=..... .+  +|+..+.    .+....  ............++.++..+.++|++.+..|++.
T Consensus       206 ~-~~L--------~~ll~~~~~-~~--~~~~~~~----l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~  269 (503)
T d1wa5b_         206 M-EPI--------LGLFNSNKP-SL--IRTATWT----LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWA  269 (503)
T ss_dssp             H-HHH--------HHGGGSCCH-HH--HHHHHHH----HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             c-ccc--------hhhcccCCH-HH--HHHHHHH----HHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            1 111        222111111 11  1222211    011110  0000000112468889999999999999999999


Q ss_pred             HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        159 ARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      +..+. .....-++.+++.|++|.++.++
T Consensus       270 l~~l~-~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         270 ISYLS-DGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HHHHH-SSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHhhc-cCCchhhhhhhhhhhhhhhhhcc
Confidence            96554 43444578899999999998764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.4e-12  Score=99.99  Aligned_cols=128  Identities=13%  Similarity=0.114  Sum_probs=100.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc-CChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-GDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~-~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|+|++..++..|+|+|+|++.+++..-+.+++.|.+|.|+.+|.+ .+..++..|+|++++.....+..+...+..   
T Consensus        67 ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---  143 (264)
T d1xqra1          67 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL---  143 (264)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT---
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHh---
Confidence            6889999999999999999999888777788899999999999975 578999999999988744332111111110   


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR  160 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R  160 (187)
                                                                            ..++.++..+.|+|+..+..|++.+.
T Consensus       144 ------------------------------------------------------~gi~~L~~lL~~~~~~~~~~a~~~L~  169 (264)
T d1xqra1         144 ------------------------------------------------------DGFSVLMRAMQQQVQKLKVKSAFLLQ  169 (264)
T ss_dssp             ------------------------------------------------------THHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------hhhhHHHHHHhcCchHHHHHHHHHHH
Confidence                                                                  12567888889999999999999998


Q ss_pred             hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        161 KMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       161 klLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .+++. ...-...++++|+||.++++|
T Consensus       170 ~l~~~-~~~~~~~~~~~~~v~~L~~lL  195 (264)
T d1xqra1         170 NLLVG-HPEHKGTLCSMGMVQQLVALV  195 (264)
T ss_dssp             HHHHH-CGGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHhc-cHHHHHHHHHhhhHHHHHHHH
Confidence            87753 344566788999999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=6.3e-12  Score=104.90  Aligned_cols=170  Identities=19%  Similarity=0.257  Sum_probs=110.5

Q ss_pred             CCCC-CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739          2 LLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK   80 (187)
Q Consensus         2 lL~~-~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~   80 (187)
                      +|.+ ++..++.+|+|+|+|+|.++++..+.+++.|++|.|+.+|.+.+.+++..|+|++++.+.+.++.|...+.+.+.
T Consensus        64 lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~  143 (434)
T d1q1sc_          64 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI  143 (434)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred             HHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhh
Confidence            4543 456799999999999999999999999999999999999999999999999999998877766666655554332


Q ss_pred             ChHHHhhhhhhHHHHHHhhchhhH--HhhhhccccccchhhhhhcccCCCCCCC---ccCCHHHHHHHhcCCCHHHHHHH
Q psy10739         81 SFDEMRRKRCEMNVELRKAHKDDQ--LFKRRNIDQLDEIEEENVTVIEPTCMSP---IKMTVPEMIEGMKSSNPKMRMIA  155 (187)
Q Consensus        81 d~~e~RrrR~e~~veLRK~kree~--l~KrRn~~~~~~~~~s~~~~~~~~~~~~---~~~~l~~iv~~l~S~d~~~ql~a  155 (187)
                        +        ..+.+-.......  ..-.++..+    ..+... ........   ....++-++..+.++|++.+..|
T Consensus       144 --~--------~l~~~l~~~~~~~~~~~~~~~~~~----~l~~~~-~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a  208 (434)
T d1q1sc_         144 --D--------PLLALLAVPDLSTLACGYLRNLTW----TLSNLC-RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  208 (434)
T ss_dssp             --H--------HHHHHTCSSCGGGSCHHHHHHHHH----HHHHHT-CCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             --h--------HHHHHHHhcccccchHHHHHHHHH----HHHHHh-hcccccchhhhhhhHHHHHHHHHhccccchhhhH
Confidence              1        1122111111100  000011110    001110 00000000   11246777888999999999999


Q ss_pred             HHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        156 TRSARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       156 ~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ++.++.+. .....-+..+++.|++|.|++++
T Consensus       209 ~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll  239 (434)
T d1q1sc_         209 CWAISYLT-DGPNERIEMVVKKGVVPQLVKLL  239 (434)
T ss_dssp             HHHHHHHT-SSCHHHHHHHHTTTCHHHHHHHH
T ss_pred             Hhhhcccc-hhhhhhHHHHhhcccchhccccc
Confidence            99997764 33333455677889999998753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.9e-10  Score=94.52  Aligned_cols=167  Identities=16%  Similarity=0.202  Sum_probs=118.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS   81 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d   81 (187)
                      ||.+++..++..|||+++|++.++.+..+.+.+.|++|.|+.++.+++..++..|++++++.....++.+...++..+. 
T Consensus       196 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~-  274 (434)
T d1q1sc_         196 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-  274 (434)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG-
T ss_pred             HHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhcccc-
Confidence            5778899999999999999999999999999999999999999999999999999999987766555555555553222 


Q ss_pred             hHHHhhhhhhHHHHHHhhchhh----HHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHH
Q psy10739         82 FDEMRRKRCEMNVELRKAHKDD----QLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATR  157 (187)
Q Consensus        82 ~~e~RrrR~e~~veLRK~kree----~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~  157 (187)
                       +        ..+++-.....+    .+.--.++.....+......         ....++.++..+.+.+++.+..|++
T Consensus       275 -~--------~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---------~~~~i~~li~~l~~~~~~v~~~a~~  336 (434)
T d1q1sc_         275 -A--------VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV---------NHGLVPFLVGVLSKADFKTQKEAAW  336 (434)
T ss_dssp             -G--------GHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH---------HTTCHHHHHHHHHSSCHHHHHHHHH
T ss_pred             -c--------hHHHhhcccchhhhHHHHHHHhhhccccchhHHHHh---------hhhhHHHHHHHHhccChHHHHHHHH
Confidence             1        122222221111    11111111110000000000         0246899999999999999999999


Q ss_pred             HHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739        158 SARKMLSKERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       158 ~~RklLS~e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      .+..+.....+.-+..+++.|++|.|+.+|
T Consensus       337 ~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll  366 (434)
T d1q1sc_         337 AITNYTSGGTVEQIVYLVHCGIIEPLMNLL  366 (434)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence            999988766556678899999999999875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.2e-09  Score=87.09  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS   74 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~   74 (187)
                      ||.|+++.++..|+|+|.|+|.|+.+.-..+++.|.+|.|+.+|.+++.++|..|+|+|.+.+.+.++.|...
T Consensus        10 ~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1          10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999999999987765555555443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.3e-09  Score=89.39  Aligned_cols=76  Identities=14%  Similarity=0.046  Sum_probs=66.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKN   77 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn   77 (187)
                      ||.++++.++..|+|+|.|++.++...-+.+.+.|.+|.|+.+|.+++.+++..|+|++.+......+.+...+.+
T Consensus       109 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  184 (529)
T d1jdha_         109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS  184 (529)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            6889999999999999999999999888889999999999999999999999999999987765555556555443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.6e-08  Score=83.81  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=93.6

Q ss_pred             CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHHH
Q psy10739          6 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEM   85 (187)
Q Consensus         6 ~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~   85 (187)
                      .+..++..|+|+|.+++. +.+..+.+++.|.+|.|+.+|++++.+++..|+|++++...+.+..|.. +          
T Consensus        72 ~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~----------  139 (529)
T d1jdha_          72 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA-V----------  139 (529)
T ss_dssp             CCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH-H----------
T ss_pred             CCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH-H----------
Confidence            456799999999999986 5566688999999999999999999999999999998774442211110 0          


Q ss_pred             hhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcC
Q psy10739         86 RRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK  165 (187)
Q Consensus        86 RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~  165 (187)
                                          .  .            .            ..++.++..+.+++++.+..|++.++.+ +.
T Consensus       140 --------------------~--~------------~------------g~i~~Lv~lL~~~~~~~~~~a~~~L~~l-~~  172 (529)
T d1jdha_         140 --------------------R--L------------A------------GGLQKMVALLNKTNVKFLAITTDCLQIL-AY  172 (529)
T ss_dssp             --------------------H--H------------H------------THHHHHHHGGGCCCHHHHHHHHHHHHHH-HT
T ss_pred             --------------------H--h------------c------------CCchHHHHHHHccChHHHHHHHHHHHHH-hh
Confidence                                0  0            0            1257788888999999999999999666 44


Q ss_pred             CCCCcHHHHHHcCCcccccccC
Q psy10739        166 ERHPPIDELIEAGVVPICVFQR  187 (187)
Q Consensus       166 e~nPPId~VI~aGvVP~~V~~~  187 (187)
                      ...+..+.+++.|.+|.++.+|
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll  194 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIM  194 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHH
Confidence            4445566778889999887653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.1e-08  Score=77.10  Aligned_cols=71  Identities=7%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhh
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRK   72 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~   72 (187)
                      +|.+++..++..|+|+|.|++.++.+..+.++++|++|.|+.+|.+++.++|.-|+|++.+...+.++.+.
T Consensus       152 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~  222 (264)
T d1xqra1         152 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR  222 (264)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999877665554443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=8.7e-06  Score=65.19  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=57.5

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc-CChhhhhhhhccccccch
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-GDAKVQKEAAINTKMSQK   65 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~-~~~~vr~ea~w~l~~~t~   65 (187)
                      ||.|+++.++..|+|+|.|++.++.+.-..+++.|.+|.|+.++.+ .+..++..|+|++.+.+.
T Consensus        52 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          52 LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999888889999999999999865 578899999999876654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.07  E-value=6.8e-05  Score=51.41  Aligned_cols=49  Identities=27%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKM   62 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~   62 (187)
                      |.+++..+|..|+|+|+++...           +.+|.|+.+|.+.+..||..|+|+++.
T Consensus        31 l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~VR~~a~~aL~~   79 (111)
T d1te4a_          31 LSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQ   79 (111)
T ss_dssp             GGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHhcchh-----------hhHHHHHhhhccchhHHHHHHHHHHHH
Confidence            4445555555555555554321           123445555555555555555555543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.01  E-value=0.00053  Score=46.65  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=42.5

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      |.++++.||..|.|+|+++.  .          ..++.|+..|.+.++.||..|+|+++...
T Consensus         1 L~D~~~~VR~~A~~aL~~~~--~----------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~   50 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG--D----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ   50 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS--S----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred             CCCcCHHHHHHHHHHHHHhC--H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence            67889999999999999873  2          24678899999999999999999997653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0023  Score=51.17  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      .|.|++..+|.-|+.+++.|+.|.. ..+... -..++|.|+..|.+.+..||..|+|+++...
T Consensus       373 ~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         373 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            3677888899999999999997753 333322 2468899999999999999999999997653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.0058  Score=46.06  Aligned_cols=51  Identities=8%  Similarity=-0.043  Sum_probs=42.2

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +|.|+++.+|..|+.+|..+.  +.         ..+|.|+.+|.+.+..||..|+++++..
T Consensus        27 ~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          27 LLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQI   77 (276)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred             HhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            688999999999999998874  22         2368899999999999999999998543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.0077  Score=53.80  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ   64 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t   64 (187)
                      +|.++++.+|.-|||+++.++.....+...-.-..+++.|+..+.+.+..|+.-||||+....
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            467889999999999999997533222222233567888999999999999999999986553

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.029  Score=49.88  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      .|.|++...|.-|+.+++-|+.|..+.+...+. .++|.|+..|.+.++.||.-|||+++..
T Consensus       403 ~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~  463 (888)
T d1qbkb_         403 LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRY  463 (888)
T ss_dssp             TTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred             hhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            466777788888999999999998766544433 4688999999999999999999998744

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.5  Score=34.66  Aligned_cols=56  Identities=16%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHH-HHhhcCChhhhhhhhcccccc
Q psy10739          2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~-~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +|.+++..++..|+++|+++..+...... +     ++.|+ .++.+.+..||..|+++++..
T Consensus        58 ~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~  114 (276)
T d1oyza_          58 FCSDKNYIRRDIGAFILGQIKICKKCEDN-V-----FNILNNMALNDKSACVRATAIESTAQR  114 (276)
T ss_dssp             HHTCSSHHHHHHHHHHHHHSCCCTTTHHH-H-----HHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhccccccccc-h-----HHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            45677777888888888777543322211 1     11222 234556666777776666433

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.46  Score=40.44  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=48.3

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +.++....+..+++.++.++.|.......-.-..++|.++..+.+.+..||..|+|+++-.
T Consensus       375 l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~  435 (876)
T d1qgra_         375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI  435 (876)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            4566777888899999999988654433333456789999999999999999999998654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.95  E-value=0.43  Score=40.39  Aligned_cols=61  Identities=15%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739          3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS   63 (187)
Q Consensus         3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~   63 (187)
                      +.+++...+.-|+.+++.|+.|.......-.-..++|.++..|.+.+..||..|+|+++..
T Consensus       378 ~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         378 ITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence            4566777888888999999988765544444455899999999999999999999998644