Psyllid ID: psy10790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEYSE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEcc
Coil and Loop (DISEMBL)
msnrgfrdrrrkdqsstnvniggkknlidenspvVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFsadkeyse
Flexible Loop (DISEMBL)
msnrgfrdrrrkdqsstnvniggkknlidenspvVQEFRKYAIimntkqdkyeRLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRafsadkeyse
Low Complexity Region (SEG)
MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEYSE
Disordered region (IsUnstruct)
*******************************SPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAF********
Disordered Region (DISOPRED)
***********************************QEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR*****V**EAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEYSE
Disordered Region (DISEMBL)
*****************NVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEYSE
Disordered Region (DISPRO)
*******************************SPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADK*Y**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLxxxxxxxxxxxxxxxxxxxxxHFKSIKAELVGEDLYQYIRAFSADKEYSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q9JHB5	290	Translin-associated prote	yes	N/A	0.937	0.410	0.424	4e-17
Q4R599	290	Translin-associated prote	N/A	N/A	0.968	0.424	0.413	5e-17
Q5RC21	290	Translin-associated prote	no	N/A	0.968	0.424	0.413	5e-17
Q99598	290	Translin-associated prote	yes	N/A	0.968	0.424	0.413	5e-17
Q9QZE7	290	Translin-associated prote	yes	N/A	0.937	0.410	0.416	3e-16
O74955	231	Translin-associated prote	yes	N/A	0.574	0.316	0.363	5e-05

>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 6/125 (4%)

Query: 5   GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
           GFR +R+ D    N    GK      +SPV+  F+ +   ++T+ DKYERLVK+SRDIT+
Sbjct: 9   GFR-KRKHDNFPHNQRREGKD--ASSSSPVMLAFKSFQQELDTRHDKYERLVKLSRDITV 65

Query: 65  ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
           ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA +   
Sbjct: 66  ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKMLQ-VAQELSGEDMHQFHRAVTTGL 124

Query: 123 KEYSE 127
           +EY E
Sbjct: 125 QEYVE 129

Possible role in spermatogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAD-KEYSE 127
            RA +   +EY E
Sbjct: 117 HRAITTGLQEYVE 129

Possible role in spermatogenesis.

Macaca fascicularis (taxid: 9541)

>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAD-KEYSE 127
            RA +   +EY E
Sbjct: 117 HRAITTGLQEYVE 129

Possible role in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAD-KEYSE 127
            RA +   +EY E
Sbjct: 117 HRAITTGLQEYVE 129

Possible role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 6/125 (4%)

Query: 5   GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
           GFR +R+ D    N    GK   +  +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct: 9   GFR-KRKHDTFPHNQRREGKDASL--SSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query: 65  ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
           ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA +   
Sbjct: 66  ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKILQ-VAQELSGEDMHQFHRAVTTGL 124

Query: 123 KEYSE 127
           +EY E
Sbjct: 125 QEYVE 129

Possible role in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)

Query: 36  QEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNIL 95
           +EF  +   +   QDK E+++++SR+ITI+SKR+IFLLH    SD   + ++ + R +I 
Sbjct: 3   EEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFD-RTSIF 61

Query: 96  ---MQTHFKSIKAELVG 109
              +    +S+K EL G
Sbjct: 62  EKKIHKELESLKRELAG 78

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
345488032	326	PREDICTED: translin-associated protein X	0.866	0.337	0.548	7e-24
158293907	317	AGAP004585-PA [Anopheles gambiae str. PE	0.732	0.293	0.557	2e-23
157126085	313	translin associated factor x [Aedes aegy	0.740	0.300	0.562	3e-23
307169093	288	Translin-associated protein X [Camponotu	0.992	0.437	0.473	1e-20
125773329	299	GA18631 [Drosophila pseudoobscura pseudo	0.740	0.314	0.5	2e-20
195158256	299	GL13728 [Drosophila persimilis] gi|19411	0.740	0.314	0.5	3e-20
195444555	289	GK11778 [Drosophila willistoni] gi|19416	0.866	0.380	0.452	3e-20
312376229	349	hypothetical protein AND_12975 [Anophele	0.771	0.280	0.5	5e-20
195113537	294	GI22036 [Drosophila mojavensis] gi|19391	0.866	0.374	0.464	7e-20
380025754	244	PREDICTED: translin-associated protein X	0.866	0.450	0.467	2e-19

>gi|345488032|ref|XP_003425818.1| PREDICTED: translin-associated protein X-like [Nasonia vitripennis]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 83/113 (73%), Gaps = 3/113 (2%)

Query: 12  KDQSSTNVNIGGKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRV 69
           K++   NV   G++ L  I+ENSPV+++F++YA+ ++ K D+YERL+KISRDITIESKR+
Sbjct: 20  KNRKQINVGDKGREVLAKINENSPVIKQFQEYAVELDAKHDRYERLIKISRDITIESKRI 79

Query: 70  IFLLHTLLR-SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           IFLLHTL + S    VL EAE RLN L+   FK+I  EL GED Y Y+RA+ A
Sbjct: 80  IFLLHTLDKESKKNAVLGEAEKRLNNLITVLFKNIAQELDGEDSYHYLRAYRA 132

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293907|ref|XP_315244.4| AGAP004585-PA [Anopheles gambiae str. PEST] gi|157016527|gb|EAA10577.4| AGAP004585-PA [Anopheles gambiae str. PEST]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DEN+P++Q FR+YA I++ K DKYER+VKISRDITIESKR+IFLLHT+   +++ QKV 
Sbjct: 28  VDENNPIIQCFREYATILDAKHDKYERIVKISRDITIESKRIIFLLHTIDPRKNNLQKVC 87

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFS 120
            EA+ RL  + + HF +I  EL  +D YQY RA++
Sbjct: 88  NEAKDRLEAIFRNHFVNIAKELKDQDPYQYTRAYT 122

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126085|ref|XP_001654528.1| translin associated factor x [Aedes aegypti] gi|108873372|gb|EAT37597.1| AAEL010419-PA [Aedes aegypti]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DEN+PVVQ FR+YA  ++ K D+YER+VK SRDITIESKR+IFLLHT+   +++  KV 
Sbjct: 43  VDENNPVVQCFREYARELDAKHDRYERIVKCSRDITIESKRIIFLLHTVDSKKNNQSKVC 102

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
            EA++RL  L +THF +I  EL G+D YQ++RA++A
Sbjct: 103 AEAKNRLQQLCRTHFATIAKELHGQDPYQFLRAYTA 138

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169093|gb|EFN61935.1| Translin-associated protein X [Camponotus floridanus]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 7/133 (5%)

Query: 1   MSNRGFRDRRRKDQSSTNVNIG--GKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MS +G R R R       +N+G  GK+ L  ID+N+ +VQ+FR YA  ++ K D+YER+ 
Sbjct: 1   MSGKGGR-RHRGHHDKDKINLGDKGKEVLENIDDNNIIVQQFRGYAAELDAKHDRYERIF 59

Query: 57  KISRDITIESKRVIFLLHTLLR-SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           KI+RD+ IESKR+IFLLHT+ + S    VL+ A+SRL+ + +T FK I  EL G+D YQ+
Sbjct: 60  KINRDVGIESKRIIFLLHTIDKESKRNVVLDAAKSRLDNMARTLFKDIANELNGQDAYQF 119

Query: 116 IRAFSAD-KEYSE 127
            RA+ A  +EY E
Sbjct: 120 HRAYRAGLEEYVE 132

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125773329|ref|XP_001357923.1| GA18631 [Drosophila pseudoobscura pseudoobscura] gi|54637657|gb|EAL27059.1| GA18631 [Drosophila pseudoobscura pseudoobscura]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DE++P+VQ FR Y+I + TK D++ER+VK+SRDITIESKR+IF LH++   + + +K+L
Sbjct: 23  VDEDNPIVQAFRNYSIELTTKHDRHERIVKLSRDITIESKRIIFTLHSIDSRKQNKEKIL 82

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           EEA+ RL  L++ +F++I  EL  +D+YQ+  A+SA
Sbjct: 83  EEAQKRLQKLIEVNFRAIALELRDQDVYQFRNAYSA 118

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158256|ref|XP_002020008.1| GL13728 [Drosophila persimilis] gi|194116777|gb|EDW38820.1| GL13728 [Drosophila persimilis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DE++P+VQ FR Y+I + TK D++ER+VK+SRDITIESKR+IF LH++   + + +K+L
Sbjct: 23  VDEDNPIVQAFRNYSIELTTKHDRHERIVKLSRDITIESKRIIFTLHSIDSRKQNKEKIL 82

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           EEA+ RL  L++ +F++I  EL  +D+YQ+  A+SA
Sbjct: 83  EEAQKRLQKLIEVNFRAIALELRDQDVYQFRNAYSA 118

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444555|ref|XP_002069921.1| GK11778 [Drosophila willistoni] gi|194166006|gb|EDW80907.1| GK11778 [Drosophila willistoni]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 80/115 (69%), Gaps = 5/115 (4%)

Query: 12  KDQSSTNVNIGGKKNLI---DENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKR 68
           K+    N N G +K  +   DE++P+VQ FR Y+  +  K DK+ER++K+SRDITIESKR
Sbjct: 3   KNSGCGNRNNGHRKRPVQQMDEDNPIVQAFRNYSNELTAKHDKHERIIKLSRDITIESKR 62

Query: 69  VIFLLHTL--LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           +IFLLH++   + +  K+LEEAE+RLN L++ +F+ +  EL  +D+YQ+  A+S 
Sbjct: 63  IIFLLHSIDSRKENKDKILEEAETRLNKLIKVNFRDVALELRNQDVYQFRAAYSP 117

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376229|gb|EFR23384.1| hypothetical protein AND_12975 [Anopheles darlingi]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 23  GKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSD 80
           G  + +DE +P++Q FR YA  ++ K D++ER+VK SRDITIESKR+IFLLHT+   +++
Sbjct: 40  GSGSSLDETNPIIQSFRGYARELDAKHDRHERIVKCSRDITIESKRIIFLLHTIDPRKNN 99

Query: 81  TQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFS 120
             KV EEA+ RL  L +  F  I  EL G+D YQY RA++
Sbjct: 100 DAKVCEEAKQRLENLFRNQFFIIAKELRGQDAYQYARAYT 139

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113537|ref|XP_002001324.1| GI22036 [Drosophila mojavensis] gi|193917918|gb|EDW16785.1| GI22036 [Drosophila mojavensis]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 79/114 (69%), Gaps = 4/114 (3%)

Query: 12  KDQSSTNVNIGGKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRV 69
           K+    N N G +K    +DE +PVVQ FR YA  ++ K D++ER++K+SRDITIESKR+
Sbjct: 3   KNPGYRNNNNGPRKRQAQLDEQNPVVQAFRSYATELDAKHDRHERILKLSRDITIESKRI 62

Query: 70  IFLLHTL--LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           IF LH++   + +  KVLEEA+ RLN L++ +F++I  EL  +D+YQ+  A+S 
Sbjct: 63  IFFLHSIDSRKQNKTKVLEEAQQRLNKLIEVNFRAIALELRNQDVYQFRAAYSP 116

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025754|ref|XP_003696633.1| PREDICTED: translin-associated protein X-like [Apis florea]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 12/122 (9%)

Query: 3   NRGFRDRRRKDQSSTNVNIGGKKNLI----DENSPVVQEFRKYAIIMNTKQDKYERLVKI 58
           NRG+R  ++       +N G KK  I    +ENS V+Q+FR YA  ++ K D++ER+VK 
Sbjct: 10  NRGYRFNKK-------INCGNKKKEIVESTNENSFVLQQFRAYATELDDKHDRFERIVKT 62

Query: 59  SRDITIESKRVIFLLHTL-LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIR 117
            RDITIESKR+IFLLHT+  +S  + VL EA+ RL  + Q HFK I  EL  +D Y Y++
Sbjct: 63  GRDITIESKRIIFLLHTIDKKSKQESVLCEADLRLQNVAQNHFKVISQELENQDPYLYLK 122

Query: 118 AF 119
           A+
Sbjct: 123 AY 124

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0038327	298	Trax "Translin associated fact	0.787	0.335	0.475	1.3e-20
UNIPROTKB|Q99598	290	TSNAX "Translin-associated pro	0.968	0.424	0.413	1.7e-18
RGD|621574	290	Tsnax "translin-associated fac	0.937	0.410	0.424	1.7e-18
UNIPROTKB|J9P139	290	TSNAX "Uncharacterized protein	0.937	0.410	0.408	7.5e-18
UNIPROTKB|F1RGU1	290	TSNAX "Uncharacterized protein	0.937	0.410	0.408	9.5e-18
MGI|MGI:1855672	290	Tsnax "translin-associated fac	0.937	0.410	0.416	1.2e-17
ZFIN|ZDB-GENE-050913-80	281	tsnax "translin-associated fac	0.803	0.362	0.466	2e-17
UNIPROTKB|Q5VVQ1	163	TSNAX "Translin-associated pro	0.968	0.754	0.4	2.5e-17
UNIPROTKB|E1BQ90	135	LOC100859597 "Uncharacterized	0.661	0.622	0.5	3.2e-17
UNIPROTKB|G3MY03	290	TSNAX "Uncharacterized protein	0.937	0.410	0.4	6.7e-17

FB|FBgn0038327 Trax "Translin associated factor X" [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/103 (47%), Positives = 77/103 (74%)

Query:    28 IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
             +DE+SP+VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVL
Sbjct:    24 LDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVL 83

Query:    86 EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD-KEYSE 127
             EEA  RLN L+  +F+++  EL  +D+YQ+  ++S   +E+ E
Sbjct:    84 EEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIE 126

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA

UNIPROTKB|Q99598 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 55/133 (41%), Positives = 84/133 (63%)

Query:     1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
             MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct:     1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query:    57 KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
             K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct:    58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query:   116 IRAFSAD-KEYSE 127
              RA +   +EY E
Sbjct:   117 HRAITTGLQEYVE 129

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

RGD|621574 Tsnax "translin-associated factor X" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 53/125 (42%), Positives = 80/125 (64%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK      +SPV+  F+ +   ++T+ DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--ASSSSPVMLAFKSFQQELDTRHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
             ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA +   
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKMLQ-VAQELSGEDMHQFHRAVTTGL 124

Query:   123 KEYSE 127
             +EY E
Sbjct:   125 QEYVE 129

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

UNIPROTKB|J9P139 TSNAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 51/125 (40%), Positives = 80/125 (64%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
             ESKR IFLLH +  + D +++L E+E +L+ + Q   + +  EL GED++Q+ RA +   
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESEIKLDGVRQKILQ-VAQELSGEDMHQFHRAITTGL 124

Query:   123 KEYSE 127
             +EY E
Sbjct:   125 QEYVE 129

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1RGU1 TSNAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 51/125 (40%), Positives = 80/125 (64%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--LNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
             ESKR IFLLH +  + D +++L E+E +L+ + Q   + +  EL GED++Q+ RA +   
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESEIKLDGVRQKILQ-VAQELSGEDMHQFHRAITTGL 124

Query:   123 KEYSE 127
             +EY E
Sbjct:   125 QEYVE 129

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

MGI|MGI:1855672 Tsnax "translin-associated factor X" [Mus musculus (taxid:10090)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 52/125 (41%), Positives = 80/125 (64%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   +  +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDTFPHNQRREGKDASL--SSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
             ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA +   
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKILQ-VAQELSGEDMHQFHRAVTTGL 124

Query:   123 KEYSE 127
             +EY E
Sbjct:   125 QEYVE 129

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050913-80 tsnax "translin-associated factor X" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 49/105 (46%), Positives = 71/105 (67%)

Query:    25 KNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SDTQK 83
             ++ ++ NS V+  F+ +   ++T+ DKYERLVKISRD+TIESKR IFLLH +    D ++
Sbjct:    22 EDCMNPNSVVISAFKVFQQELDTRYDKYERLVKISRDVTIESKRTIFLLHRVASVPDVEE 81

Query:    84 VLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD-KEYSE 127
             +L EAE +L+ + Q     I  EL GEDL+Q+ RAF+   +EY E
Sbjct:    82 ILNEAEVKLDGVRQK-IGQIAEELRGEDLHQFHRAFTPGIQEYVE 125

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5VVQ1 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 56/140 (40%), Positives = 84/140 (60%)

Query:     1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
             MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct:     1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query:    57 KISRDITIESKRVIFLLHTLLRS--------DTQKVLEEAESRLNILMQTHFKSIKAELV 108
             K+SRDIT+ESKR IFLLH +  S        D + +L E+E +L+ + Q  F+ +  EL 
Sbjct:    58 KLSRDITVESKRTIFLLHRITSSQYLDHSAPDMEDILTESEIKLDGVRQKIFQ-VAQELS 116

Query:   109 GEDLYQYIRAFSAD-KEYSE 127
             GED++Q+ RA +   +EY E
Sbjct:   117 GEDMHQFHRAITTGLQEYVE 136

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|E1BQ90 LOC100859597 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/86 (50%), Positives = 62/86 (72%)

Query:    41 YAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDT-QKVLEEAESRLNILMQTH 99
             + + ++T+ DKYERLVK+SRDITIESKR IFLLH  + +   ++VL E+E +L+ + +  
Sbjct:    13 FQLELDTRHDKYERLVKLSRDITIESKRTIFLLHRYISAPNGEEVLNESEVKLDAVRRK- 71

Query:   100 FKSIKAELVGEDLYQYIRAFSADKEY 125
              K +  EL+GED+YQ+ RA S D EY
Sbjct:    72 IKQVAQELIGEDMYQFHRAISPDLEY 97

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|G3MY03 TSNAX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 50/125 (40%), Positives = 79/125 (63%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
             ESKR IFLLH +  + D +++L E+E +L+ + Q   + +  EL  ED++Q+ RA +   
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESEVKLDGVRQKILQ-VAQELSVEDMHQFHRAITTGL 124

Query:   123 KEYSE 127
             +EY E
Sbjct:   125 QEYVE 129

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
pfam01997	187	pfam01997, Translin, Translin family	2e-12
COG2178	204	COG2178, COG2178, Predicted RNA-binding protein of	7e-05

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 49  QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELV 108
            D  E L+KISRDIT  SK+ IF LH     + +++L+EA+  L          +K  L 
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELL--------AKLKELLK 52

Query: 109 GEDLYQYIRAFS-ADKEYSE 127
           G   Y+Y  A+S A +EY E
Sbjct: 53  GHPYYRYSGAWSNALQEYVE 72

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 47  TKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAE 106
            K    E  +K+SR+I   S   IFLLH       +   EEAE +L        + +K  
Sbjct: 14  EKDKAREEALKLSREIVRLSGEAIFLLH-------RGDFEEAEKKLKK-ASEAVEKLKRL 65

Query: 107 LVG-EDLYQYIRAFSADKEYSE 127
           L G  +LY      +A +EY E
Sbjct: 66  LAGFPELYFAGFVTTALQEYVE 87

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG3066|consensus	271		99.97
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	99.84
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	99.81
KOG3067|consensus	226		99.45
COG2178	204	Predicted RNA-binding protein of the translin fami	99.01

>KOG3066|consensus

Probab=99.97  E-value=2.5e-32  Score=219.11  Aligned_cols=121  Identities=31%  Similarity=0.347  Sum_probs=111.8

Q ss_pred             CCcccccccCCCCCCCCcCCCCcccccCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC-CC
Q psy10790          2 SNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SD   80 (127)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~-~~   80 (127)
                      |.+|+|.++ +...|++.+..++  .+..++|++..|.+|+++|++.||+||||||+|||||++|||+||+|||+.+ ++
T Consensus         6 sSafqRvaf-mlmaPklkpqkar--tmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~   82 (271)
T KOG3066|consen    6 SSAFQRVAF-MLMAPKLKPQKAR--TMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGF   82 (271)
T ss_pred             cchHHHHHH-HHhCcccCccccc--ccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCC
Confidence            457888888 7788888875442  4678899999999999999999999999999999999999999999999987 89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhccccCccc
Q psy10790         81 TQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEY  125 (127)
Q Consensus        81 ~~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~yrY~r~~s~Glq~  125 (127)
                      +++++.++...|+.|+.+.|.+++.||+|.|+|+|+|++++|||+
T Consensus        83 ~e~~l~~~~~~le~vr~k~f~~l~~EL~G~d~~kf~rA~t~GlQE  127 (271)
T KOG3066|consen   83 PEPKLFDRTSILEKVRHKEFESLKRELAGLDADKFSRACTHGLQE  127 (271)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcccHHH
Confidence            999999999999999999999999999999999999999999997

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=99.84  E-value=1.1e-21  Score=152.85  Aligned_cols=75  Identities=41%  Similarity=0.656  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhccccCccc
Q psy10790         49 QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEY  125 (127)
Q Consensus        49 hDrRERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~yrY~r~~s~Glq~  125 (127)
                      ||+||+|||+|||||++||++||+|||++.+.+.+++++|++.+++|.. .+.+|+ ++++.++|+|+++|++|+|+
T Consensus         1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE   75 (200)
T PF01997_consen    1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQE   75 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999987788999999999999997 999999 99999999999999999996

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=99.81  E-value=7.6e-20  Score=143.92  Aligned_cols=84  Identities=21%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCch
Q psy10790         34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLY  113 (127)
Q Consensus        34 v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~y  113 (127)
                      +.++|++|+++||++||+||+|+|+|||||+.||++||+|||..       +.+|.+.+.++.. .+..|+..+++..+|
T Consensus         2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~-------~~~a~~~l~~a~~-~~~~l~~~~~~~~~~   73 (204)
T PRK14562          2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGD-------FEEAEKLLKEAEE-LVKELKELLKDHPEL   73 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHH-HHHHHHHHhccCchh
Confidence            46789999999999999999999999999999999999999952       6778888999888 899999999999999


Q ss_pred             hhhhccccCccc
Q psy10790        114 QYIRAFSADKEY  125 (127)
Q Consensus       114 rY~r~~s~Glq~  125 (127)
                      +|+++|++|+|+
T Consensus        74 ~y~~~~~~~lQE   85 (204)
T PRK14562         74 YYAGYVGTALQE   85 (204)
T ss_pred             hhhhhcchHHHH
Confidence            999999999996

>KOG3067|consensus

Probab=99.45  E-value=2.4e-13  Score=107.74  Aligned_cols=89  Identities=13%  Similarity=0.208  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q psy10790         35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDL  112 (127)
Q Consensus        35 ~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~--~~~~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~  112 (127)
                      ..+|.+||+.||+.|+.||.|.++++.|+..+|.|-.+|+-++.  ...++.|..|++++..|++ .+..||..++..+|
T Consensus         5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy   83 (226)
T KOG3067|consen    5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY   83 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence            48999999999999999999999999999999999999999997  6789999999999999998 99999999999999


Q ss_pred             hhhhhccccCcc
Q psy10790        113 YQYIRAFSADKE  124 (127)
Q Consensus       113 yrY~r~~s~Glq  124 (127)
                      |||+.+|++-+|
T Consensus        84 yry~~~w~~~~Q   95 (226)
T KOG3067|consen   84 YRYNGHWRRSTQ   95 (226)
T ss_pred             EEecchHHHHHH
Confidence            999999998776

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=1.1e-09  Score=87.09  Aligned_cols=83  Identities=25%  Similarity=0.287  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchh
Q psy10790         35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQ  114 (127)
Q Consensus        35 ~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~yr  114 (127)
                      ...+.++++.|++..+.||+++++||+|+.+|+.+||++|+-.       +.+|+.+++.+.. .+..|...|.+-.-..
T Consensus         2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~-------~eeA~~~l~~a~~-~v~~Lk~~l~~~pel~   73 (204)
T COG2178           2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGD-------FEEAEKKLKKASE-AVEKLKRLLAGFPELY   73 (204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHH-HHHHHHHHHhhhHHHH
Confidence            3568999999999999999999999999999999999999952       6789999999887 8888988888766555


Q ss_pred             hhhccccCccc
Q psy10790        115 YIRAFSADKEY  125 (127)
Q Consensus       115 Y~r~~s~Glq~  125 (127)
                      |.-..+-|+|+
T Consensus        74 ~ag~~~~a~QE   84 (204)
T COG2178          74 FAGFVTTALQE   84 (204)
T ss_pred             HHHhhcchHHH
Confidence            65555666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
3axj_B	298	High Resolution Crystal Structure Of C3po Length =		2e-21
3pja_J	290	Crystal Structure Of Human C3po Complex Length = 29		4e-18
3riu_C	269	Crystal Structure Of Drosophila Hexameric C3po Form		5e-18

>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po Length = 298

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DE+SP+VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVL
Sbjct: 24  LDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVL 83
Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           EEA  RLN L+  +F+++  EL  +D+YQ+  ++S 
Sbjct: 84  EEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSP 119

>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex Length = 290

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116
Query: 116 IRAFSAD-KEYSE 127
            RA +   +EY E
Sbjct: 117 HRAITTGLQEYVE 129

>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 269

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 34  VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLEEAESR 91
           +VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVLEEA  R
Sbjct: 1   IVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQR 60
Query: 92  LNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           LN L+  +F+++  EL  +D+YQ+  ++S 
Sbjct: 61  LNKLIAVNFRAVALELRDQDVYQFRSSYSP 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	2e-18
3qb5_K	290	Translin-associated protein X; alpha helical bundl	2e-17
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	2e-14
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score = 77.6 bits (190), Expect = 2e-18
 Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 6/123 (4%)

Query: 1   MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISR 60
           M   G    R        +        +DE+SP+VQ+FR Y+  +  K D++ER+VK+SR
Sbjct: 1   MPKNGGAGHRNTAPRKRQI----PAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSR 56

Query: 61  DITIESKRVIFLLHTL--LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRA 118
           DITIESKR+IFLLH++   + + +KVLEEA  RLN L+  +F+++  EL  +D+YQ+  +
Sbjct: 57  DITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSS 116

Query: 119 FSA 121
           +S 
Sbjct: 117 YSP 119

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score = 74.8 bits (183), Expect = 2e-17
 Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 10/133 (7%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR R+  +          +   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFRKRKHDNFPHNQ---RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLH-TLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH      D + +L E+E +L+ + +     +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV-RQKIFQVAQELSGEDMHQF 116

Query: 116 IRAFS-ADKEYSE 127
            RA +   +EY E
Sbjct: 117 HRAITTGLQEYVE 129

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 29  DENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLE 86
             N   +  F  Y   ++ +Q+  E +  + R+I   SK     L  +    S       
Sbjct: 15  MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACG 74

Query: 87  EAESRLNILMQTHFKSIKAELVGEDLYQYIRAFS-ADKEYSE 127
            A  ++  L    ++ +   +     Y+Y   ++   +    
Sbjct: 75  LARKQVE-LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIF 115

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score = 63.9 bits (155), Expect = 1e-13
 Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 22  GGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLH----TLL 77
           G   +    +  V + F +    +  +QD  E + K+ + +   ++ ++ LL        
Sbjct: 3   GSHHHHHHGSMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAG 62

Query: 78  RSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFS 120
             D  K   +A       ++TH  S+K +   E  Y++   + 
Sbjct: 63  FQDIPKRCLKAREHFGT-VKTHLTSLKTKFPAEQYYRFHEHWR 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 3   NRGFRDRR-RKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRD 61
           +  F +++ R D ++ N + G   N +       Q+ + Y   +     KYERLV    D
Sbjct: 499 DFRFLEQKIRHDSTAWNAS-GSILNTL-------QQLKFYKPYICDNDPKYERLVNAILD 550

Query: 62  --ITIESKRVIF----LLHTLLRSDTQKVLEEAESRL 92
               IE   +      LL   L ++ + + EEA  ++
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
3qb5_K	290	Translin-associated protein X; alpha helical bundl	100.0
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	99.97
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	99.94
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	99.94
1gak_A	141	SP18, fertilization protein; helical bundle, cell	86.88

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=100.00  E-value=2e-36  Score=247.16  Aligned_cols=119  Identities=40%  Similarity=0.673  Sum_probs=92.6

Q ss_pred             CcccccccCCCCCCCCcCCCCcccccCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC-CCh
Q psy10790          3 NRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SDT   81 (127)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~-~~~   81 (127)
                      ++|||+|| |+++++|.++.++.  +++++||++||++|+++||++||+||||||+|||||++||++||+|||+++ +++
T Consensus         7 ~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~   83 (290)
T 3qb5_K            7 SGGFRKRK-HDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDM   83 (290)
T ss_dssp             ---------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred             CCccccCC-CCCCccCCCccccC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence            57999999 66688888766654  789999999999999999999999999999999999999999999999987 679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhccccCccc
Q psy10790         82 QKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEY  125 (127)
Q Consensus        82 ~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~yrY~r~~s~Glq~  125 (127)
                      +++|++|+++|++|++ +|..|+++|++.++|+|+++|++|||+
T Consensus        84 ~~il~ea~~~L~~i~~-~~~~La~~l~~~~~yry~~~~s~~lQE  126 (290)
T 3qb5_K           84 EDILTESEIKLDGVRQ-KIFQVAQELSGEDMHQFHRAITTGLQE  126 (290)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHSSSCSTTTGGGTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            9999999999999987 999999999999999999999999996

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=99.97  E-value=2.1e-31  Score=218.30  Aligned_cols=100  Identities=47%  Similarity=0.755  Sum_probs=95.1

Q ss_pred             cccCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHHHHHHH
Q psy10790         26 NLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSI  103 (127)
Q Consensus        26 ~~~~~~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~--~~~~~i~~ea~~~l~~I~~~~l~~i  103 (127)
                      .++++++||.+||..|+++||++||+||||+|+|||||++||++||+|||+++  .+.+++|++|+++|.+|+.++|..|
T Consensus        22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l  101 (298)
T 3axj_B           22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV  101 (298)
T ss_dssp             -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999997  7789999999999999987688999


Q ss_pred             hhhhccCCchhhhhccccCccc
Q psy10790        104 KAELVGEDLYQYIRAFSADKEY  125 (127)
Q Consensus       104 a~el~g~~~yrY~r~~s~Glq~  125 (127)
                      |++|++.++|+|+++|++|||+
T Consensus       102 a~~l~~~~~y~y~~~~s~~lQE  123 (298)
T 3axj_B          102 ALELRDQDVYQFRSSYSPGLQE  123 (298)
T ss_dssp             HHHTTTSCTTTTHHHHHHHHHH
T ss_pred             HHHcCccCHHHHHhccCHHHHH
Confidence            9999999999999999999996

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=99.94  E-value=2e-27  Score=190.46  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=89.8

Q ss_pred             CChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10790         31 NSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAELV  108 (127)
Q Consensus        31 ~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~--~~~~~i~~ea~~~l~~I~~~~l~~ia~el~  108 (127)
                      ++++.+||..|+++||++||+||||+|+|||||+.||++||+|||+++  .+.+++|++|+++|+++++ ++..|+++++
T Consensus        17 ~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l~   95 (249)
T 3axj_A           17 NFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELVP   95 (249)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            578999999999999999999999999999999999999999999985  4578999999999999998 8999999999


Q ss_pred             cCCchhhhhccccCccc
Q psy10790        109 GEDLYQYIRAFSADKEY  125 (127)
Q Consensus       109 g~~~yrY~r~~s~Glq~  125 (127)
                      +.++|+|+++|++|+|+
T Consensus        96 ~~~~yrY~~~~s~~lQE  112 (249)
T 3axj_A           96 AGQYYRYSDHWTFITQR  112 (249)
T ss_dssp             TTCHHHHGGGTHHHHHH
T ss_pred             cCchHHHhhhccHHHHH
Confidence            99999999999999996

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=99.94  E-value=5.3e-27  Score=187.04  Aligned_cols=94  Identities=17%  Similarity=0.288  Sum_probs=89.5

Q ss_pred             CChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC----CChHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10790         31 NSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR----SDTQKVLEEAESRLNILMQTHFKSIKAE  106 (127)
Q Consensus        31 ~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~----~~~~~i~~ea~~~l~~I~~~~l~~ia~e  106 (127)
                      ++|+.++|+.|+++||++||+||||+|+|||||+.||++||+|||+++    ++.+++|++|+++|++++. ++..|+++
T Consensus        12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~   90 (240)
T 1j1j_A           12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK   90 (240)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            689999999999999999999999999999999999999999999982    5688999999999999998 99999999


Q ss_pred             hccCCchhhhhccccCccc
Q psy10790        107 LVGEDLYQYIRAFSADKEY  125 (127)
Q Consensus       107 l~g~~~yrY~r~~s~Glq~  125 (127)
                      +++.++|+|+++|++|+|+
T Consensus        91 l~~~~~yrY~~~~s~~lQE  109 (240)
T 1j1j_A           91 FPAEQYYRFHEHWRFVLQR  109 (240)
T ss_dssp             SCGGGHHHHGGGTHHHHHH
T ss_pred             cccchHHHHhccccHHHHH
Confidence            9999999999999999996

>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1

Probab=86.88  E-value=0.35  Score=35.54  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=26.1

Q ss_pred             HHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHH
Q psy10790         52 YERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEE   87 (127)
Q Consensus        52 RERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~e   87 (127)
                      |||+++.|+|-++.|||||.+=|+   +...+.++.
T Consensus        53 reRlm~~C~~y~~~Skkii~L~~~---~lNkk~f~k   85 (141)
T 1gak_A           53 RERMMRYCMDYARYSKKILQLKHL---PVNKKTLTK   85 (141)
T ss_dssp             HHHHHHBHHHHHHHHHHHHHHTTC---CCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---cccHHHHHH
Confidence            899999999999999999988666   334444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	6e-14

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 6e-14
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 34  VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRS----DTQKVLEEAE 89
           V + F +    +  +QD  E + K+ + +   ++ ++ LL  + +     D  K   +A 
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 90  SRLNILMQTHFKSIKAELVGEDLYQYIRAFS 120
                 ++TH  S+K +   E  Y++   + 
Sbjct: 63  EHFGT-VKTHLTSLKTKFPAEQYYRFHEHWR 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1gaka_	137	SP18 {Green abalone (Haliotis fulgens) [TaxId: 645	88.79

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.7e-28  Score=185.59  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=88.5

Q ss_pred             ChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC----CChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10790         32 SPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR----SDTQKVLEEAESRLNILMQTHFKSIKAEL  107 (127)
Q Consensus        32 ~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~----~~~~~i~~ea~~~l~~I~~~~l~~ia~el  107 (127)
                      +++.+||.+|+++||++||+||+|+|+|||||+.||++||+|||+++    .+.+.+|++|++.|++|++ .+..|++++
T Consensus         1 m~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~l~~~~   79 (217)
T d1j1ja_           1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTKF   79 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence            46889999999999999999999999999999999999999999975    4567899999999999998 999999999


Q ss_pred             ccCCchhhhhccccCccc
Q psy10790        108 VGEDLYQYIRAFSADKEY  125 (127)
Q Consensus       108 ~g~~~yrY~r~~s~Glq~  125 (127)
                      ++.++|+|+++|++|+|+
T Consensus        80 ~~~~~y~y~~~~~~~lQE   97 (217)
T d1j1ja_          80 PAEQYYRFHEHWRFVLQR   97 (217)
T ss_dssp             CGGGHHHHGGGTHHHHHH
T ss_pred             ccCcHHHHHhHhHHHHHH
Confidence            999999999999999996

>d1gaka_ a.19.1.1 (A:) SP18 {Green abalone (Haliotis fulgens) [TaxId: 6456]}

class: All alpha proteins
fold: Fertilization protein
superfamily: Fertilization protein
family: Fertilization protein
domain: SP18
species: Green abalone (Haliotis fulgens) [TaxId: 6456]

Probab=88.79  E-value=0.11  Score=36.41  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=26.5

Q ss_pred             HHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHH
Q psy10790         52 YERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEE   87 (127)
Q Consensus        52 RERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~e   87 (127)
                      |||+++.|+|-++.|||||.+=|+   +...+.++.
T Consensus        53 reRlm~~C~~Y~~~Skkii~L~~~---~lNkk~f~k   85 (137)
T d1gaka_          53 RERMMRYCMDYARYSKKILQLKHL---PVNKKTLTK   85 (137)
T ss_dssp             HHHHHHBHHHHHHHHHHHHHHTTC---CCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---cccHHHHHH
Confidence            899999999999999999988666   444444444