Psyllid ID: psy10821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MLTLVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccEEEccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccEEcccccccccEcccccHHHHHHccccccccccccEEEcccccEEEEcccEEEccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHEEEEEccHHHccccccc
Coil and Loop (DISEMBL)
mltlvtiaptpehrcaipdveingtvldwnsTEVLTWIhkkddgkfescrmfdaftnktmtchswvydktyyktsrTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTvlrntglgvGSMCARLSAALTPLiglmdsfdkriptTIFATITLMSGILstflpetwnmvCDRRWMLAVAQMTYMFGVFTGAVtlgsladk
Flexible Loop (DISEMBL)
mltlvtiaptpehrcaipdveingtvldwnSTEVLTWIHKKDDGKFESCRMFDAftnktmtchswvYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK
Low Complexity Region (SEG)
MLTLVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK
Disordered region (IsUnstruct)
***LVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLG*****
Disordered Region (DISOPRED)
MLTLVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGS****
Disordered Region (DISEMBL)
MLTLVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK
Disordered Region (DISPRO)
MLTLVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLA**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTLVTIAPTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q8HY24	542	Solute carrier family 22	no	N/A	0.425	0.156	0.4	8e-15
Q66J52	552	Solute carrier family 22	N/A	N/A	0.395	0.143	0.455	1e-14
Q7ZX53	487	Solute carrier family 22	N/A	N/A	0.42	0.172	0.440	2e-14
Q70BM6	543	Solute carrier family 22	yes	N/A	0.42	0.154	0.416	3e-14
O88909	537	Solute carrier family 22	yes	N/A	0.42	0.156	0.416	5e-14
Q6A4L0	551	Solute carrier family 22	no	N/A	0.39	0.141	0.423	6e-14
Q9WTN6	564	Solute carrier family 22	no	N/A	0.41	0.145	0.378	6e-14
O76082	557	Solute carrier family 22	yes	N/A	0.415	0.149	0.380	7e-14
Q28ES4	487	Solute carrier family 22	no	N/A	0.42	0.172	0.428	9e-14
Q9R1U7	536	Solute carrier family 22	yes	N/A	0.42	0.156	0.404	3e-13

>sp|Q8HY24|S22A8_RABIT Solute carrier family 22 member 8 OS=Oryctolagus cuniculus GN=SLC22A8 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 57/85 (67%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +  FGK C++GSF+ ++ Y++ELFPTV+R TG+G+ ++ AR+ + ++PL+ +       I
Sbjct: 414 LAVFGKGCLSGSFSCLFLYTSELFPTVIRQTGMGISNVWARVGSMISPLVKITGEIQPFI 473

Query: 144 PTTIFATITLMSGILSTFLPETWNM 168
           P  I+ T+ L+ G  + FLPET N 
Sbjct: 474 PNIIYGTVALLGGSAALFLPETLNQ 498

Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney.
Oryctolagus cuniculus (taxid: 9986)

>sp|Q66J52|S226B_XENLA Solute carrier family 22 member 6-B OS=Xenopus laevis GN=slc22a6-b PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 50/79 (63%)

Query: 87  FGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTT 146
           FGK C+A SF  +Y Y+ EL+PTV+R TG+G+G+M ARL   + PL  +       +P  
Sbjct: 432 FGKGCLAASFNCLYLYTGELYPTVIRQTGMGLGAMMARLGGIIAPLAQMTGDIYHSLPLI 491

Query: 147 IFATITLMSGILSTFLPET 165
           IF  + ++SGI   FLPET
Sbjct: 492 IFGCLPILSGIAGCFLPET 510

Involved in the renal elimination of endogenous and exogenous organic anions. Mediates the sodium-independent uptake of p-aminohippurate (PAH), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP) and edaravone sulfate. PAH uptake is inhibited by furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, furosemide, indomethacin, bumetamide, losartan, probenecid, phenol red, urate, and alpha-ketoglutarate.

Xenopus laevis (taxid: 8355)

>sp|Q7ZX53|S22FL_XENLA Solute carrier family 22 member 15-like OS=Xenopus laevis GN=slc22a15b PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +  FGK  ++ +F V+Y Y++EL+PTV+RN GLGV +M  R    L+P I  M SF+  +
Sbjct: 376 LALFGKLSVSAAFNVVYIYTSELYPTVVRNAGLGVCAMACRFGGILSPFIPAMKSFNPSM 435

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P   F    + +GILS  LPET N
Sbjct: 436 PFVAFGISGISAGILSLLLPETRN 459

Probably transports organic cations.

Xenopus laevis (taxid: 8355)

>sp|Q70BM6|S22A8_PIG Solute carrier family 22 member 8 OS=Sus scrofa GN=SLC22A8 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +  FGK C++GSF+ ++ Y++EL+PTV+R TG+G  ++ AR+ +   PL+ +       I
Sbjct: 415 LAVFGKGCLSGSFSCLFLYTSELYPTVIRQTGMGASNLWARVGSMTAPLVKITGELQPFI 474

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P  IF TI L+ G  + FLPET N
Sbjct: 475 PNIIFGTIALLGGSAALFLPETLN 498

Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney.

Sus scrofa (taxid: 9823)

>sp|O88909|S22A8_MOUSE Solute carrier family 22 member 8 OS=Mus musculus GN=Slc22a8 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +  FGK C++GSF+ ++ Y++EL+PTVLR TG+G+ ++ AR+ + + PL+ +       I
Sbjct: 414 LAVFGKGCLSGSFSCLFLYTSELYPTVLRQTGMGISNIWARVGSMIAPLVKITGELQPFI 473

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P  IF T+TL+ G  + FL ET N
Sbjct: 474 PNVIFGTMTLLGGSAAFFLLETLN 497

Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney. Mediates the uptake of p-amino-hippurate (PAH) and estron sulfate (ES). Also mediates uptake of several organic compounds such as prostaglandin E(2), prostaglandin F(2-alpha), allopurinol, 6-mercaptopurine (6-MP), 5-fluorouracil (5-FU), and L-carnitine.

Mus musculus (taxid: 10090)

>sp|Q6A4L0|S22AD_MOUSE Solute carrier family 22 member 13 OS=Mus musculus GN=Slc22a13 PE=2 SV=3

 Score = 77.4 bits (189), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 54/78 (69%)

Query: 88  GKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTI 147
           GKF  A +F + Y Y+AELFPT++R TG+G+ S+ +R+   +TPL+ L++ + + IP  I
Sbjct: 425 GKFASAAAFTISYVYTAELFPTIIRQTGMGLVSIFSRVGGIITPLVMLLEQYHQAIPMVI 484

Query: 148 FATITLMSGILSTFLPET 165
           F ++ + +G+L   LPET
Sbjct: 485 FGSLPIGAGLLCALLPET 502

Mus musculus (taxid: 10090)

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 58/82 (70%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +V  GKF I  +++++Y Y+AEL+PTV+RN G+GV S  +RL + L+P    + ++D+R+
Sbjct: 434 LVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRRL 493

Query: 144 PTTIFATITLMSGILSTFLPET 165
           P  +  ++T+++ I++ F PE+
Sbjct: 494 PYILMGSLTILTAIITLFFPES 515

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.

Mus musculus (taxid: 10090)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 59/84 (70%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +V  GKF +  +F+++Y Y+AEL+PTV+RN G+GV S  +RL + L+P    + ++D+ +
Sbjct: 431 LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFL 490

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P  +  ++T+++ IL+ FLPE++ 
Sbjct: 491 PYILMGSLTILTAILTLFLPESFG 514

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

>sp|Q28ES4|S22FL_XENTR Solute carrier family 22 member 15-like OS=Xenopus tropicalis GN=slc22a15b PE=2 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +  FGK  ++ +F V+Y Y++EL+PTV+RN GLGV +M  R    L+P I  M S +  +
Sbjct: 376 LALFGKLSVSAAFNVVYIYTSELYPTVVRNAGLGVCAMACRFGGILSPFIPTMKSLNPSM 435

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P   F    + +GILS  LPET N
Sbjct: 436 PFVAFGISGISAGILSLLLPETRN 459

Probably transports organic cations.

Xenopus tropicalis (taxid: 8364)

>sp|Q9R1U7|S22A8_RAT Solute carrier family 22 member 8 OS=Rattus norvegicus GN=Slc22a8 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 54/84 (64%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           +  FGK C++GSF+ ++ Y++EL+PTVLR TG+G+ ++ AR+ + + PL+ +       I
Sbjct: 414 LAVFGKGCLSGSFSCLFLYTSELYPTVLRQTGMGISNVWARVGSMIAPLVKITGELQPFI 473

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P  IF T  L+ G  + FL ET N
Sbjct: 474 PNVIFGTTALLGGSAAFFLLETLN 497

Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney. Functions as one of the detoxification systems on the choroid plexus (CP) by removing substrates from the cerebrospinal fluid (CSF). Functions as an organic anion/dicarboxylate exchanger that couples organic anion uptake indirectly to the sodium gradient. Mediates the uptake from brain of organic anions, such as p-aminohippurate (PAH), ochratoxin A, and estrone sulfate (ES) and a cationic compound, cimetidine in a sodium independent manner. Mediates the uptake of benzylpenicillin (PCG), 2,4-dichloro-phenoxyacetate (2,4-D) and PAH in CP. Mediates the efflux of PAH, pravastatin, pitavastatin and PCG from the cerebrum into the blood circulation across the blood-brain barrier (BBB). Involved in regulating the CSF concentration of H(2)-receptor antagonists at the CP. Mediates the renal uptake of indoxyl sulfate (IS), 3-carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) pravastatin, PCG, dehydroepiandrosterone sulfate (DHEAS) and is partly involved in the renal uptake of temocaprilat and ES.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
156551862	551	PREDICTED: organic cation transporter pr	0.155	0.056	0.690	2e-27
340715694	570	PREDICTED: organic cation transporter pr	0.385	0.135	0.666	3e-26
350396754	570	PREDICTED: organic cation transporter pr	0.385	0.135	0.666	4e-26
322779445	566	hypothetical protein SINV_01969 [Solenop	0.36	0.127	0.655	7e-26
383862061	553	PREDICTED: organic cation transporter pr	0.415	0.150	0.638	8e-26
328785777	543	PREDICTED: organic cation transporter pr	0.38	0.139	0.666	5e-25
242024691	462	organic cation transporter, putative [Pe	0.435	0.188	0.632	6e-25
332031328	559	Organic cation transporter protein [Acro	0.35	0.125	0.630	7e-25
307210583	567	Organic cation transporter protein [Harp	0.325	0.114	0.619	7e-25
270002247	348	hypothetical protein TcasGA2_TC001230 [T	0.415	0.238	0.686	7e-25

>gi|156551862|ref|XP_001604656.1| PREDICTED: organic cation transporter protein-like [Nasonia vitripennis]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 71/84 (84%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           IV FGK CIAGSFA+IYNY+AELFPTVLRNT LG+GSMCARLS ALTP+I L+DSF+ ++
Sbjct: 414 IVLFGKACIAGSFAIIYNYTAELFPTVLRNTALGIGSMCARLSGALTPMIMLLDSFNPKV 473

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P T+F  I L++G L+ +LPET N
Sbjct: 474 PATVFGFIALLAGFLALYLPETVN 497

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715694|ref|XP_003396344.1| PREDICTED: organic cation transporter protein-like isoform 1 [Bombus terrestris] gi|340715696|ref|XP_003396345.1| PREDICTED: organic cation transporter protein-like isoform 2 [Bombus terrestris]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
           I+ IV FGK CIAGSFAVIYNY+AELFPTV+RNT LG+GSMCAR S ALTPLI L+DS +
Sbjct: 421 IVTIVLFGKACIAGSFAVIYNYTAELFPTVVRNTALGIGSMCARFSGALTPLIMLLDSLN 480

Query: 141 KRIPTTIFATITLMSGILSTFLPETWN 167
            ++P  +F  + L+SG LS +LPET N
Sbjct: 481 PKVPAVLFGFVALVSGFLSLYLPETVN 507

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396754|ref|XP_003484654.1| PREDICTED: organic cation transporter protein-like [Bombus impatiens]

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
           I+ IV FGK CIAGSFAVIYNY+AELFPTV+RNT LG+GSMCAR S ALTPLI L+DS +
Sbjct: 421 IVTIVLFGKACIAGSFAVIYNYTAELFPTVVRNTALGIGSMCARFSGALTPLIMLLDSLN 480

Query: 141 KRIPTTIFATITLMSGILSTFLPETWN 167
            ++P  +F  + L+SG LS +LPET N
Sbjct: 481 PKVPAVLFGFVALVSGFLSLYLPETVN 507

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779445|gb|EFZ09637.1| hypothetical protein SINV_01969 [Solenopsis invicta]

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 70/87 (80%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
           I+ IV  GK CIAGSFA++YNY+AELFPTV+RNT LG+GSMCARLS ALTP+I L+DS D
Sbjct: 426 IVTIVLIGKGCIAGSFAIVYNYTAELFPTVVRNTALGIGSMCARLSGALTPMIFLLDSLD 485

Query: 141 KRIPTTIFATITLMSGILSTFLPETWN 167
            R+P T+F    L++G LS +LPET N
Sbjct: 486 PRVPATLFGFTALVAGFLSLYLPETVN 512

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862061|ref|XP_003706502.1| PREDICTED: organic cation transporter protein-like [Megachile rotundata]

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 73/94 (77%)

Query: 74  TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLI 133
           TS +   I+ IV  GK CIA SFAVIYNY+AELFPTV+RNT LG+GSMCARLS ALTPLI
Sbjct: 402 TSISSTAIVTIVLVGKACIAVSFAVIYNYTAELFPTVVRNTALGIGSMCARLSGALTPLI 461

Query: 134 GLMDSFDKRIPTTIFATITLMSGILSTFLPETWN 167
            L+DSF+ ++P  +F  + L+SG LS +LPET N
Sbjct: 462 MLLDSFNPKVPAVLFGFVALVSGFLSMYLPETVN 495

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785777|ref|XP_003250654.1| PREDICTED: organic cation transporter protein-like [Apis mellifera]

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 69/87 (79%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
           I+ IV FGK  I+GSFAVIYNY+AELFPTV+RNTGLG+GSMCARLS  LTP I L+DS D
Sbjct: 421 IVGIVLFGKSNISGSFAVIYNYTAELFPTVVRNTGLGIGSMCARLSGTLTPAIMLLDSLD 480

Query: 141 KRIPTTIFATITLMSGILSTFLPETWN 167
            ++P  +F  I L+SG LS +LPET N
Sbjct: 481 PKVPAILFGFIALVSGFLSMYLPETAN 507

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024691|ref|XP_002432760.1| organic cation transporter, putative [Pediculus humanus corporis] gi|212518245|gb|EEB20022.1| organic cation transporter, putative [Pediculus humanus corporis]

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 71/87 (81%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
           ++ IV  GKF +AGSFA+IYNY+AELFPTV+R+T +G+G MCARLS A+TPL+ L+DS D
Sbjct: 337 VIAIVMIGKFALAGSFAIIYNYTAELFPTVVRSTAVGIGGMCARLSGAITPLLILLDSLD 396

Query: 141 KRIPTTIFATITLMSGILSTFLPETWN 167
           K +P  IFA+I ++SGILS  LPET N
Sbjct: 397 KTLPVLIFASIAIISGILSLLLPETVN 423

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031328|gb|EGI70841.1| Organic cation transporter protein [Acromyrmex echinatior]

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 68/84 (80%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           IV  GK CIAGSFAV+YNY+AELFPTV+RNT LG+GSMCARLS +LTP+I L+D+ D R+
Sbjct: 424 IVLVGKCCIAGSFAVVYNYTAELFPTVVRNTALGIGSMCARLSGSLTPMIFLLDTLDPRV 483

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P  +F  + L++G L+ +LPET N
Sbjct: 484 PAALFGFVALVAGFLALYLPETLN 507

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210583|gb|EFN87051.1| Organic cation transporter protein [Harpegnathos saltator]

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 68/84 (80%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
           IV  GK C+AGSFAV+YNY+AELFPTV+RNT LG+GSMCARLS ALTP+I L+DS + ++
Sbjct: 428 IVLIGKACVAGSFAVVYNYTAELFPTVVRNTALGIGSMCARLSGALTPMIFLLDSLNPKV 487

Query: 144 PTTIFATITLMSGILSTFLPETWN 167
           P  +F  + L++G L+ +LPET N
Sbjct: 488 PAVLFGLVALLAGFLALYLPETLN 511

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002247|gb|EEZ98694.1| hypothetical protein TcasGA2_TC001230 [Tribolium castaneum]

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 67/83 (80%)

Query: 85  VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIP 144
           V  GKF IA SFA+IYNYSAELFPTV+RN+ LG+G+MCAR S ALTPLI L+DSFD  +P
Sbjct: 214 VVTGKFLIASSFAIIYNYSAELFPTVVRNSALGIGAMCARTSGALTPLITLLDSFDPTLP 273

Query: 145 TTIFATITLMSGILSTFLPETWN 167
           + IFA I L+SG L+ FLPET N
Sbjct: 274 SIIFAVIALISGFLTLFLPETLN 296

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
FB|FBgn0038407	555	CG6126 [Drosophila melanogaste	0.42	0.151	0.666	2.2e-44
UNIPROTKB|F1NXX1	557	F1NXX1 "Uncharacterized protei	0.435	0.156	0.413	6.9e-21
UNIPROTKB|E2QT45	557	SLC22A5 "Uncharacterized prote	0.415	0.149	0.397	1.3e-18
FB|FBgn0033809	563	CG4630 [Drosophila melanogaste	0.42	0.149	0.465	1.3e-18
FB|FBgn0086365	567	Orct2 "Organic cation transpor	0.435	0.153	0.413	3.8e-18
UNIPROTKB|F1RJV4	581	SLC22A5 "Uncharacterized prote	0.415	0.142	0.397	6.4e-18
UNIPROTKB|Q2KJE9	557	SLC22A5 "Solute carrier family	0.415	0.149	0.397	8.6e-18
UNIPROTKB|O76082	557	SLC22A5 "Solute carrier family	0.415	0.149	0.385	8.9e-18
FB|FBgn0019952	548	Orct "Organic cation transport	0.435	0.158	0.425	9.1e-18
UNIPROTKB|E2R879	607	SLC22A8 "Uncharacterized prote	0.42	0.138	0.404	1.1e-17

FB|FBgn0038407 CG6126 [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
 Identities = 56/84 (66%), Positives = 66/84 (78%)

Query:    84 IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
             +V  GK  IAGSFAVIYNYSAELFPTV+RN+ +G+GSMCARLS ALTPLI L+DSFD +I
Sbjct:   422 VVMAGKLLIAGSFAVIYNYSAELFPTVVRNSAMGLGSMCARLSGALTPLITLLDSFDPKI 481

Query:   144 PTTIFATITLMSGILSTFLPETWN 167
             P  +F  + L+SG    FLPET N
Sbjct:   482 PAVLFGVVALISGFWVMFLPETMN 505

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NXX1 F1NXX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
 Identities = 36/87 (41%), Positives = 62/87 (71%)

Query:    82 LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDK 141
             + +V  GKF I  +F+++Y Y+AEL+PTV+RN G+G  SM +RL + L+P    + ++D+
Sbjct:   429 ILLVMLGKFGITSAFSMVYVYTAELYPTVVRNMGVGASSMASRLGSILSPYFAYLGAYDR 488

Query:   142 RIPTTIFATITLMSGILSTFLPETWNM 168
              +P  +  ++T++SGIL+ FLPE++ M
Sbjct:   489 FLPYILMGSLTVLSGILTLFLPESYGM 515

GO:0016021 "integral to membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

UNIPROTKB|E2QT45 SLC22A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 33/83 (39%), Positives = 59/83 (71%)

Query:    84 IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
             +V  GKF +  +F+++Y Y+AEL+PTV+RN G+GV S  +RL + L+P    + ++D+ +
Sbjct:   431 LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFL 490

Query:   144 PTTIFATITLMSGILSTFLPETW 166
             P  +  ++T+++ IL+ FLPET+
Sbjct:   491 PYILMGSLTILTAILTLFLPETF 513

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033809 CG4630 [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
 Identities = 40/86 (46%), Positives = 59/86 (68%)

Query:    82 LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDK 141
             L++V  GK  I  SFAVIY ++AE+ PTV+R+ G+GV S  AR  A L P + L+ S+  
Sbjct:   465 LFLV--GKLGITSSFAVIYTFTAEMMPTVIRSGGVGVMSTFARFGAMLAPFVPLLASYYD 522

Query:   142 RIPTTIFATITLMSGILSTFLPETWN 167
              +P  +F T++L++G+LS  LPET+N
Sbjct:   523 PLPLLLFGTLSLVAGLLSLLLPETFN 548

GO:0015226 "carnitine transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0086365 Orct2 "Organic cation transporter 2" [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
 Identities = 36/87 (41%), Positives = 52/87 (59%)

Query:    81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
             I+     GK  I  S+  +Y +SAE FPTV+RN  LG  SM AR+S  + P +  + +  
Sbjct:   428 IVACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFLNFLATIW 487

Query:   141 KRIPTTIFATITLMSGILSTFLPETWN 167
             K +P  I  ++TL++G+LS  LPET N
Sbjct:   488 KPLPLLICGSLTLVAGLLSLLLPETHN 514

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=NAS

GO:0015695 "organic cation transport" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0007390 "germ-band shortening" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

UNIPROTKB|F1RJV4 SLC22A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
 Identities = 33/83 (39%), Positives = 59/83 (71%)

Query:    84 IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
             +V  GKF I  +F+++Y Y+AEL+PTV+RN G+GV S  +RL + L+P    + ++D+ +
Sbjct:   455 LVMVGKFGITAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFIYLGAYDRFL 514

Query:   144 PTTIFATITLMSGILSTFLPETW 166
             P  +  ++T+++ IL+ FLPE++
Sbjct:   515 PYILMGSLTILTAILTLFLPESF 537

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q2KJE9 SLC22A5 "Solute carrier family 22 (Organic cation/carnitine transporter), member 5" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
 Identities = 33/83 (39%), Positives = 59/83 (71%)

Query:    84 IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
             +V  GKF +  +F+++Y Y+AEL+PTV+RN G+GV S  +RL + L+P    + ++D+ +
Sbjct:   431 LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFL 490

Query:   144 PTTIFATITLMSGILSTFLPETW 166
             P  +  ++T+++ IL+ FLPET+
Sbjct:   491 PYILMGSLTILTAILTLFLPETF 513

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O76082 SLC22A5 "Solute carrier family 22 member 5" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 32/83 (38%), Positives = 59/83 (71%)

Query:    84 IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
             +V  GKF +  +F+++Y Y+AEL+PTV+RN G+GV S  +RL + L+P    + ++D+ +
Sbjct:   431 LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFL 490

Query:   144 PTTIFATITLMSGILSTFLPETW 166
             P  +  ++T+++ IL+ FLPE++
Sbjct:   491 PYILMGSLTILTAILTLFLPESF 513

GO:0005524 "ATP binding" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0042895 "antibiotic transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IC;TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0070715 "sodium-dependent organic cation transport" evidence=IDA

GO:0015651 "quaternary ammonium group transmembrane transporter activity" evidence=IDA

GO:0015697 "quaternary ammonium group transport" evidence=IDA

GO:0015879 "carnitine transport" evidence=IMP;IDA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IMP;IDA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IMP

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0031526 "brush border membrane" evidence=ISS;IDA

GO:0015893 "drug transport" evidence=IC

GO:0015238 "drug transmembrane transporter activity" evidence=IC

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=IC

FB|FBgn0019952 Orct "Organic cation transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
 Identities = 37/87 (42%), Positives = 50/87 (57%)

Query:    81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFD 140
             I+     GK  I  S+  IY +SAE FPTV+RN GLG  SM AR+   L P + L+    
Sbjct:   422 IVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPYLKLLGEIW 481

Query:   141 KRIPTTIFATITLMSGILSTFLPETWN 167
             + +P  I   ++L +G+LS  LPET N
Sbjct:   482 RPLPLIICGALSLTAGLLSLLLPETLN 508

GO:0015695 "organic cation transport" evidence=ISS

GO:0006915 "apoptotic process" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2R879 SLC22A8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 34/84 (40%), Positives = 55/84 (65%)

Query:    84 IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRI 143
             +  FGK C++ SF+ ++ Y++EL+PTV+R TG+G+ ++  R+ +   PL+ +   F   I
Sbjct:   479 LAVFGKGCLSSSFSCLFLYTSELYPTVIRQTGMGISNLWTRVGSMAAPLVKITADFQPFI 538

Query:   144 PTTIFATITLMSGILSTFLPETWN 167
             P  +F TITL+ G  + FLPET N
Sbjct:   539 PNVLFGTITLLGGSATLFLPETLN 562

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	200
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-19
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-04

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 33/81 (40%), Positives = 52/81 (64%)

Query: 85  VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIP 144
              GKF I  +F ++Y Y+AEL+PTV+RN G+GV S  AR+ + ++P +  +      +P
Sbjct: 417 AVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLP 476

Query: 145 TTIFATITLMSGILSTFLPET 165
             +F  + L++GIL+ FLPET
Sbjct: 477 LVLFGGLALLAGILTLFLPET 497

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDS 138
           +L  +    F +  +F  +   ++EL P   R T  G+ +    L  AL PL+   L+D+
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327

Query: 139 FDKRIPTTIFATITLMSGILSTFLP 163
                   I A + L++ +L   LP
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 81  ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG 134
           +L +     F + G  + +Y   A  +PT +R TG+G      RL A + P++ 
Sbjct: 341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 166 WNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK 200
           W++VC+  W + + Q  +  GV  G+   G L+D+
Sbjct: 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG0253|consensus	528		99.71
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.48
TIGR00898	505	2A0119 cation transport protein.	99.46
KOG0252|consensus	538		99.44
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.43
TIGR00898	505	2A0119 cation transport protein.	99.35
KOG0569|consensus	485		99.31
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.29
PRK10642	490	proline/glycine betaine transporter; Provisional	99.18
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.08
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.06
KOG0254|consensus	513		99.04
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.95
PRK03545	390	putative arabinose transporter; Provisional	98.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.93
KOG0255|consensus	521		98.93
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.91
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.89
TIGR00893	399	2A0114 d-galactonate transporter.	98.89
PRK09952	438	shikimate transporter; Provisional	98.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.88
PRK11663	434	regulatory protein UhpC; Provisional	98.87
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.87
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.85
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.85
PRK10091	382	MFS transport protein AraJ; Provisional	98.84
TIGR00891	405	2A0112 putative sialic acid transporter.	98.84
KOG0255|consensus	521		98.83
PRK03699	394	putative transporter; Provisional	98.83
PRK15075	434	citrate-proton symporter; Provisional	98.83
PRK10642	490	proline/glycine betaine transporter; Provisional	98.82
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.82
TIGR00900	365	2A0121 H+ Antiporter protein.	98.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.77
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.77
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.76
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.75
PLN00028	476	nitrate transmembrane transporter; Provisional	98.73
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.7
PRK10489	417	enterobactin exporter EntS; Provisional	98.68
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.67
PRK10054	395	putative transporter; Provisional	98.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.65
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.64
TIGR00895	398	2A0115 benzoate transport.	98.64
PRK09874	408	drug efflux system protein MdtG; Provisional	98.63
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.63
PRK09952	438	shikimate transporter; Provisional	98.63
KOG0569|consensus	485		98.62
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.62
PRK12307	426	putative sialic acid transporter; Provisional	98.61
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.6
PRK09705	393	cynX putative cyanate transporter; Provisional	98.6
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.6
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.6
PRK11043	401	putative transporter; Provisional	98.6
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.59
PRK03893	496	putative sialic acid transporter; Provisional	98.58
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.57
PRK05122	399	major facilitator superfamily transporter; Provisi	98.56
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.55
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.54
PRK10489	417	enterobactin exporter EntS; Provisional	98.52
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.5
KOG0254|consensus	513		98.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.49
PRK12382	392	putative transporter; Provisional	98.49
PRK05122	399	major facilitator superfamily transporter; Provisi	98.47
PRK10504	471	putative transporter; Provisional	98.47
PRK11010	491	ampG muropeptide transporter; Validated	98.46
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.46
KOG1330|consensus	493		98.46
PRK15075	434	citrate-proton symporter; Provisional	98.39
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.37
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.36
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.36
KOG2532|consensus	466		98.34
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.33
PRK15011	393	sugar efflux transporter B; Provisional	98.31
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.28
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.28
PRK03633	381	putative MFS family transporter protein; Provision	98.27
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.26
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.26
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.25
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.24
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.24
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.23
PRK11663	434	regulatory protein UhpC; Provisional	98.22
TIGR00901	356	2A0125 AmpG-related permease.	98.21
PRK10133	438	L-fucose transporter; Provisional	98.2
PRK12307	426	putative sialic acid transporter; Provisional	98.2
PTZ00207	591	hypothetical protein; Provisional	98.2
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.18
KOG3764|consensus	464		98.17
PRK09528	420	lacY galactoside permease; Reviewed	98.16
PRK12382	392	putative transporter; Provisional	98.16
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.15
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.14
PRK03893	496	putative sialic acid transporter; Provisional	98.08
KOG2615|consensus	451		98.07
PRK15011	393	sugar efflux transporter B; Provisional	98.06
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.06
PRK09705	393	cynX putative cyanate transporter; Provisional	98.04
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.04
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.99
TIGR00893	399	2A0114 d-galactonate transporter.	97.97
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.96
PRK11902	402	ampG muropeptide transporter; Reviewed	97.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.92
PRK03545	390	putative arabinose transporter; Provisional	97.89
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.87
PRK03699	394	putative transporter; Provisional	97.84
PRK09874	408	drug efflux system protein MdtG; Provisional	97.82
PLN00028	476	nitrate transmembrane transporter; Provisional	97.81
TIGR00891	405	2A0112 putative sialic acid transporter.	97.79
PRK03633	381	putative MFS family transporter protein; Provision	97.74
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.72
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.71
KOG2533|consensus	495		97.7
TIGR00805	633	oat sodium-independent organic anion transporter.	97.68
PRK11010	491	ampG muropeptide transporter; Validated	97.66
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.58
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.57
TIGR00895	398	2A0115 benzoate transport.	97.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.53
PRK10504	471	putative transporter; Provisional	97.5
PF13347	428	MFS_2: MFS/sugar transport protein	97.48
KOG0253|consensus	528		97.44
KOG2816|consensus	463		97.43
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.4
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.39
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.33
PRK09528	420	lacY galactoside permease; Reviewed	97.3
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.29
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.2
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.19
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.18
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.18
KOG2504|consensus	509		97.14
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.09
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.07
PRK11462	460	putative transporter; Provisional	97.03
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.01
TIGR00900	365	2A0121 H+ Antiporter protein.	97.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.84
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.81
PRK10091	382	MFS transport protein AraJ; Provisional	96.8
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.76
PRK09669	444	putative symporter YagG; Provisional	96.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.67
PRK10054	395	putative transporter; Provisional	96.59
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.58
PRK11902	402	ampG muropeptide transporter; Reviewed	96.57
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.54
TIGR00901	356	2A0125 AmpG-related permease.	96.51
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.48
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.45
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.43
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.38
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.14
PRK10429	473	melibiose:sodium symporter; Provisional	96.13
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.11
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.99
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.92
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.77
PRK11043	401	putative transporter; Provisional	95.63
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	95.63
KOG0252|consensus	538		95.61
PRK09669	444	putative symporter YagG; Provisional	95.55
KOG3762|consensus	618		95.48
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.45
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	95.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.29
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.17
PRK10473	392	multidrug efflux system protein MdtL; Provisional	94.94
PRK10133	438	L-fucose transporter; Provisional	94.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	94.9
PRK09848	448	glucuronide transporter; Provisional	94.85
KOG4686|consensus	459		94.8
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	94.66
PRK10429	473	melibiose:sodium symporter; Provisional	94.59
KOG2504|consensus	509		94.58
PRK11652	394	emrD multidrug resistance protein D; Provisional	94.16
PRK10213	394	nepI ribonucleoside transporter; Reviewed	94.06
PRK09584	500	tppB putative tripeptide transporter permease; Rev	93.78
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	93.76
COG0477	338	ProP Permeases of the major facilitator superfamil	93.56
KOG2563|consensus	480		93.52
TIGR00896	355	CynX cyanate transporter. This family of proteins	93.02
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	91.44
PF13347	428	MFS_2: MFS/sugar transport protein	91.2
PRK10207	489	dipeptide/tripeptide permease B; Provisional	91.08
PRK11462	460	putative transporter; Provisional	90.96
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.33
COG2211	467	MelB Na+/melibiose symporter and related transport	90.15
PRK09848	448	glucuronide transporter; Provisional	88.19
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	86.92
KOG2533|consensus	495		84.75
COG2211	467	MelB Na+/melibiose symporter and related transport	82.93
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	81.74
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	81.33

>KOG0253|consensus

Probab=99.71  E-value=2.2e-18  Score=144.15  Aligned_cols=149  Identities=21%  Similarity=0.377  Sum_probs=119.5

Q ss_pred             CCCCcccccccccceeeeeecCCCCeeeEEEEEecccchhHHHHHhHhhhhhh-cc--ccchHHHHHHHHHHHHHHhhhh
Q psy10821         20 VEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYY-KT--SRTMEYILYIVFFGKFCIAGSF   96 (200)
Q Consensus        20 ~~~~~~~~~w~~~~~~~~~p~~~~G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~   96 (200)
                      +.++...+++++.. -.|+. |-||..+++.++||+|||..++..++...+.. ..  ..+........+...++.++.+
T Consensus       375 ~c~~s~~~dYrdll-itsla-efPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f  452 (528)
T KOG0253|consen  375 NCPLSVAKDYRDLL-ITSLA-EFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF  452 (528)
T ss_pred             cCCccchhHHHHHH-HHHHh-hCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh
Confidence            34566667775543 12222 35799999999999999988776555433322 21  2233455666777889999999


Q ss_pred             hhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhcc-cCCCCCc
Q psy10821         97 AVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLP-ETWNMVC  170 (200)
Q Consensus        97 ~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-et~~~~l  170 (200)
                      .+.|+|.+|.|||.+|++|+|.+..++++++++.|++++..+.....+..+++.+++++++++.++| |||||++
T Consensus       453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            9999999999999999999999999999999999999988888888999999999999999999987 9999875

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.48  E-value=6.4e-14  Score=128.75  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=99.3

Q ss_pred             CCCeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         42 DDGKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        42 ~~G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      .+|.++++++.||+|||+++..+.+...+.   .....+..+++...++..++..+.++..+.+++|+||++.|++++|+
T Consensus       609 i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi  688 (742)
T TIGR01299       609 LPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGF  688 (742)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            357788899999999998776544333222   12223334445555566667777888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhcccCCCCCc
Q psy10821        119 GSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVC  170 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~~~~l  170 (200)
                      .+.+++++++++|++. .+...+...++++.+++.++++++.+++|||+++.+
T Consensus       689 ~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       689 LNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            9999999999999998 444455667888888888888888888899998765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00898 2A0119 cation transport protein

Probab=99.46  E-value=3e-13  Score=119.07  Aligned_cols=119  Identities=19%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++.+.+.||+|||+.+..+......   ......+...+.+..++.+++.++.......+++|.+|.+.|+...++....
T Consensus       145 ~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~  224 (505)
T TIGR00898       145 FVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF  224 (505)
T ss_pred             HhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHH
Confidence            3457788999999877654332222   1222445666777778888888888999999999999999999999998666


Q ss_pred             HHHHHHHHHHHHH-HhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        123 ARLSAALTPLIGL-MDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       123 ~~i~~~~~p~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ..++..+.|.+.. ..+  |+..+++.++..++..+..+++||+.
T Consensus       225 ~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       225 FSLGLVLLPLVAYFIPD--WRWLQLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            6678888888773 333  77788888777777777777788864

>KOG0252|consensus

Probab=99.44  E-value=1.3e-13  Score=118.27  Aligned_cols=136  Identities=18%  Similarity=0.211  Sum_probs=106.6

Q ss_pred             CCCeeeEEEEEecccchhHHHHHhHhhhhhhcc---c-----cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHh
Q psy10821         42 DDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKT---S-----RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRN  113 (200)
Q Consensus        42 ~~G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~  113 (200)
                      .||+.+...++|++|||...+.++++.......   .     ......+...+...+.+.+.++...++.+|.||+++|+
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~  441 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS  441 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence            469999999999999998777655544332221   1     11223345555566778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--Hh-----hcCchHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHH
Q psy10821        114 TGLGVGSMCARLSAALTPLIGL--MD-----SFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLA  177 (200)
Q Consensus       114 tg~~l~~~~~~i~~~~~p~i~~--~~-----~~~~~~~~~~~~~~~~~~~i~~~~lpet~~~~l~~~~~~~  177 (200)
                      ++.|++.+.|.+|++++.+.+.  .+     ..+....+++++.++.+..+..+++||||+++++|...+.
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE  512 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence            9999999999999999999883  33     3456678888888998888889999999999999865444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.43  E-value=1.4e-13  Score=121.49  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=87.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hc--c-c-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YK--T-S-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~--~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      |.++++++.||+|||+.++.+.......   ..  . . ..........+...++..+..+..+.+.+|+||++.|+++.
T Consensus       351 g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~  430 (502)
T TIGR00887       351 GYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH  430 (502)
T ss_pred             HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHH
Confidence            3445567999999997765433222111   00  0 1 11111122212222334456677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-H-Hhh----------cCchHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHH
Q psy10821        117 GVGSMCARLSAALTPLIG-L-MDS----------FDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWM  175 (200)
Q Consensus       117 ~l~~~~~~i~~~~~p~i~-~-~~~----------~~~~~~~~~~~~~~~~~~i~~~~lpet~~~~l~~~~~  175 (200)
                      ++...+++++++++|++. . .+.          .+....+++++++++++.+..+++|||+++++||..+
T Consensus       431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhhC
Confidence            999999999999999998 3 332          2234567777877777766666779999999877543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=99.35  E-value=1.3e-12  Score=115.00  Aligned_cols=129  Identities=28%  Similarity=0.460  Sum_probs=97.0

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hc-cccc-hHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YK-TSRT-MEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      |.++.+.+.||+|||..+..........   .. .... ..+.....++..++....++..+.+.+|++|++.|++++|+
T Consensus       371 ~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~  450 (505)
T TIGR00898       371 AKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGV  450 (505)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhH
Confidence            4445567889999997665443322211   11 1222 23344455556667777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q psy10821        119 GSMCARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDR  172 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~~~~l~~  172 (200)
                      ....+++++.++|++......+...++.++++..+++.+..+++|||++++++|
T Consensus       451 ~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       451 CSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            999999999999998865555667788888888888888888899999998876

>KOG0569|consensus

Probab=99.31  E-value=3.7e-12  Score=111.58  Aligned_cols=136  Identities=16%  Similarity=0.104  Sum_probs=97.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhhhc-------cccch-HHH-----HHHHHHHHHHHhhhhhhHHHhhccccchh
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTYYK-------TSRTM-EYI-----LYIVFFGKFCIAGSFAVIYNYSAELFPTV  110 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~-------~~~~~-~~~-----~~~~~l~~~~~~~~~~~~~~~~sElfPt~  110 (200)
                      .++++.+++||.|||+++..+...+.....       ..... .|.     ....+....+..|..++.|.+.+|+||++
T Consensus       321 ~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~  400 (485)
T KOG0569|consen  321 STLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS  400 (485)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc
Confidence            346678999999999877654433322111       11111 221     22333344566788899999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH-Hhh-cCchHHHHHHHHHHHHHHHHHh-hcccCCCCCchHHHHHHHhh
Q psy10821        111 LRNTGLGVGSMCARLSAALTPLIGL-MDS-FDKRIPTTIFATITLMSGILST-FLPETWNMVCDRRWMLAVAQ  180 (200)
Q Consensus       111 vR~tg~~l~~~~~~i~~~~~p~i~~-~~~-~~~~~~~~~~~~~~~~~~i~~~-~lpet~~~~l~~~~~~~~~~  180 (200)
                      -|..+.+++..++++..++..+.++ +.+ .+. +.++.+.+.+.+..+..+ ++||||||+..|..++-.++
T Consensus       401 ~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  401 ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            9999999999999999999999983 444 444 777888887777766655 47999999999887765543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.29  E-value=9.1e-14  Score=120.47  Aligned_cols=134  Identities=21%  Similarity=0.269  Sum_probs=89.7

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhhh---hhh-----ccccc----hHHHHHHHHH-HHHHHhhhhhhHHHhhccccch
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYDK---TYY-----KTSRT----MEYILYIVFF-GKFCIAGSFAVIYNYSAELFPT  109 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~-----~~~~~----~~~~~~~~~l-~~~~~~~~~~~~~~~~sElfPt  109 (200)
                      .+...+..++||+|||+....+.....   ...     .....    ..+.+....+ ...+..+..+..+.+.+|+||+
T Consensus       301 ~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt  380 (451)
T PF00083_consen  301 LGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT  380 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence            466777899999999966543322211   111     11111    1112222222 2333446667778999999999


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHH--HhhcCchHHHHHHHHHHHHHHHH-HhhcccCCCCCchHHHHH
Q psy10821        110 VLRNTGLGVGSMCARLSAALTPLIGL--MDSFDKRIPTTIFATITLMSGIL-STFLPETWNMVCDRRWML  176 (200)
Q Consensus       110 ~vR~tg~~l~~~~~~i~~~~~p~i~~--~~~~~~~~~~~~~~~~~~~~~i~-~~~lpet~~~~l~~~~~~  176 (200)
                      ++|+++.++++.++++++.+.|++..  .+..+....+.++++++++..+. ..++||||+++++|.+++
T Consensus       381 ~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  381 KVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            99999999999999999999999883  33444456666666666665554 455799999999987754

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.18  E-value=6.4e-11  Score=104.43  Aligned_cols=127  Identities=17%  Similarity=0.147  Sum_probs=85.8

Q ss_pred             eeEEEEEecccchhHHHHHhHh-h---hh--hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVY-D---KT--YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~-~---~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +..+.+.||+|||+.+..+... .   ..  ....+.+........++..++.....+....+.+|+||++.|+++.++.
T Consensus       304 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~  383 (490)
T PRK10642        304 PVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA  383 (490)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHH
Confidence            3457788999999765533221 1   11  1111222333333444445555566777888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-H-Hhhc-CchHHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q psy10821        120 SMCARLSAALTPLIG-L-MDSF-DKRIPTTIFATITLMSGILSTFLPETWNMVCDR  172 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~-~-~~~~-~~~~~~~~~~~~~~~~~i~~~~lpet~~~~l~~  172 (200)
                      ++++.+++.++|++. . .+.. ++..++++..+.++++.+..+++||++++.+++
T Consensus       384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~  439 (490)
T PRK10642        384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKG  439 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence            999998888999888 3 3333 356666666777777777777789998876643

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.08  E-value=3.2e-10  Score=98.95  Aligned_cols=131  Identities=15%  Similarity=0.144  Sum_probs=84.0

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhh---h--c-cccchH-HHHHHHHHHHHHHh-hhhhhHHHhhccccchhHHhHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTY---Y--K-TSRTME-YILYIVFFGKFCIA-GSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~---~--~-~~~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      ++++.+.||+|||..+..+.......   .  . ...... +.....++..+... ...+..+.+++|.||++.|+++.|
T Consensus       324 ~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g  403 (479)
T PRK10077        324 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA  403 (479)
T ss_pred             HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHH
Confidence            34457789999997665433322111   0  1 111111 22222222222222 233567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-H-------hhcCchHHHHHHHHHHHHHHHHHhh-cccCCCCCchHHHHH
Q psy10821        118 VGSMCARLSAALTPLIGL-M-------DSFDKRIPTTIFATITLMSGILSTF-LPETWNMVCDRRWML  176 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~~-~-------~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~~l~~~~~~  176 (200)
                      +...++++++++++.+.. .       +..++...+.++++.++++.++.++ .||+|+++++|..++
T Consensus       404 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        404 IAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            999999999888877773 2       2456667777777777777666554 699999988765443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.06  E-value=1.5e-09  Score=91.57  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.++.+.+.||+|||+.+..+.....   .......+.+......++.++..+...+....+..|.+|.+.|++..++..
T Consensus        56 ~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (385)
T TIGR00710        56 GQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILM  135 (385)
T ss_pred             HHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            55778899999999977664332222   111223344455556666667777777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh-hcccCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST-FLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpet~~  167 (200)
                      ....++..++|.+.  ..+..+|+..+.+.++..++..+... ..||++.
T Consensus       136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999888  35567888888887777666655544 4577654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0254|consensus

Probab=99.04  E-value=1.2e-09  Score=96.99  Aligned_cols=135  Identities=19%  Similarity=0.149  Sum_probs=89.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh-------hcc-cc------chHH--HHHHHHHHHHHHhhhhhhHHHhhcccc
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY-------YKT-SR------TMEY--ILYIVFFGKFCIAGSFAVIYNYSAELF  107 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~-------~~~-~~------~~~~--~~~~~~l~~~~~~~~~~~~~~~~sElf  107 (200)
                      +..++.+++||+|||+.++.+.......       ... ..      ...+  +....+....+..+..++.|.+.+|+|
T Consensus       345 ~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEif  424 (513)
T KOG0254|consen  345 GTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIF  424 (513)
T ss_pred             HHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccC
Confidence            3445578999999997766433222111       111 11      1122  233344445666778888999999999


Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHH-Hhhc-CchHHHHHHHHHHHHHHH--HHhhcccCCCCCchHHHHHHH
Q psy10821        108 PTVLRNTGLGVGSMCARLSAALTPLIGL-MDSF-DKRIPTTIFATITLMSGI--LSTFLPETWNMVCDRRWMLAV  178 (200)
Q Consensus       108 Pt~vR~tg~~l~~~~~~i~~~~~p~i~~-~~~~-~~~~~~~~~~~~~~~~~i--~~~~lpet~~~~l~~~~~~~~  178 (200)
                      |.++|+++.+++..++++.+++.....+ .... +....+.+++..+.+..+  ..+++||||+++++|.++...
T Consensus       425 p~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  425 PLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             cHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence            9999999999999999987777766663 3333 335566666666666555  455579999999998776443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.97  E-value=4.6e-09  Score=89.53  Aligned_cols=124  Identities=16%  Similarity=0.121  Sum_probs=88.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+........++.++..+..+...+.+.+|.+|.+.|+++.++.+
T Consensus        54 ~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  133 (392)
T PRK10473         54 AMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLN  133 (392)
T ss_pred             HHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            45678999999999987664332221   112223344455555566666666777788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy10821        121 MCARLSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGILS-TFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~  167 (200)
                      ....++..++|.+. . .+..+|+..+++.++.+++..+.. .+.||++.
T Consensus       134 ~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        134 GITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            88888888888887 3 456678888888777776655543 44677643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.96  E-value=1.6e-09  Score=95.73  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             CCeeeEEEEEecccchhHHHHHhH---hhhhhhccccc------hHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHh
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWV---YDKTYYKTSRT------MEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRN  113 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~  113 (200)
                      .|.++.+.+.||+|||+.+..+..   ..........+      ...+....++.+++.++.++....+.+|.+|++.|+
T Consensus        71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg  150 (502)
T TIGR00887        71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG  150 (502)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence            356677899999999976653322   11111111111      345667777888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--Hh-----------------------hcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        114 TGLGVGSMCARLSAALTPLIGL--MD-----------------------SFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       114 tg~~l~~~~~~i~~~~~p~i~~--~~-----------------------~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ++.++.+....++..+++.+..  ..                       +++|+.++.+.++.+++..+..+++||++
T Consensus       151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESp  228 (502)
T TIGR00887       151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETP  228 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            9999998888787777776651  11                       13588888777777777777777789973

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.95  E-value=6.7e-09  Score=87.74  Aligned_cols=123  Identities=20%  Similarity=0.311  Sum_probs=89.0

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+........++.+++.+........+.+|.+|.+.|++..++.+
T Consensus        42 ~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (377)
T PRK11102         42 GQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVT  121 (377)
T ss_pred             HHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            56778999999999977664433221   112223344445555666667777777788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS-TFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~  166 (200)
                      ....++..++|.+.  +.+..+|+..+.+.+..+++..+.. ++.||++
T Consensus       122 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        122 LVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            98889999999887  3556788888888777777765544 4457653

>PRK03545 putative arabinose transporter; Provisional

Probab=98.94  E-value=7.5e-09  Score=88.33  Aligned_cols=122  Identities=11%  Similarity=0.055  Sum_probs=87.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+++..+.....   .......+.+++.+..++.++..+..++....+.+|.+|.+.|+++.|+..
T Consensus        60 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~  139 (390)
T PRK03545         60 MSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLA  139 (390)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHH
Confidence            33455788999999987764433222   222224455566666666666666667778899999999999999999988


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh-hcccC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST-FLPET  165 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpet  165 (200)
                      ....++..++|.+.  +.+..+|+..+.+.++++++..+..+ ..||.
T Consensus       140 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        140 TGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            88889999999888  35667899998888887776655443 35654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.7e-08  Score=86.41  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++-..+.||+.||+++.........   .....++...+...+++..+..+..++....+.+|+-|++.|++++++....
T Consensus        66 p~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G  145 (394)
T COG2814          66 PLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG  145 (394)
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH
Confidence            4446778999999887754433322   2233677888899999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cc
Q psy10821        123 ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LP  163 (200)
Q Consensus       123 ~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lp  163 (200)
                      ..+...++.-+.  +-+.++|+..|...+.++++..+..+. +|
T Consensus       146 ~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         146 LTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            887777655555  467789999999999999998777655 68

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.93  E-value=2.8e-09  Score=91.12  Aligned_cols=123  Identities=17%  Similarity=0.139  Sum_probs=87.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+....+.....   .......+.+......++.++..+...+....+.+|.+|.+.|+++.++.+
T Consensus        66 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  145 (406)
T PRK11551         66 GALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMY  145 (406)
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            55677899999999977664432221   112223455556666677777777778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHH-HhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGIL-STFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~-~~~lpet~  166 (200)
                      ....+++.++|.+.  ..+..+|+..+++.+++.++..+. ..++||++
T Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        146 CGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            88888999988887  245566777777766655554443 34467753

>KOG0255|consensus

Probab=98.93  E-value=1.8e-08  Score=89.43  Aligned_cols=136  Identities=29%  Similarity=0.381  Sum_probs=97.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh-----hhccccch-HHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT-----YYKTSRTM-EYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      .........||+|||...+.+......     ........ ........++.++....+...+.+.+|++||.+|.++.+
T Consensus       366 ~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~  445 (521)
T KOG0255|consen  366 AYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVG  445 (521)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            344445777899999766543322211     11111112 245667777788888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhhcCchHHHHHHHHHHHHHHHHH-hhcccCCCCCchHHHHHHHh
Q psy10821        118 VGSMCARLSAALTPLIGL-MDSFDKRIPTTIFATITLMSGILS-TFLPETWNMVCDRRWMLAVA  179 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~~-~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~~~l~~~~~~~~~  179 (200)
                      .....++++++++|++.. .........+.+++..+.+.+... .++|||+++.+.+..++.++
T Consensus       446 ~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~  509 (521)
T KOG0255|consen  446 AISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN  509 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence            999999999999999994 444444444444566666655554 77899999999888777663

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.91  E-value=6.9e-09  Score=74.50  Aligned_cols=122  Identities=25%  Similarity=0.270  Sum_probs=85.0

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+...........   ......+........++.++..+...+....+..|.+|++.|+++.++..
T Consensus        14 ~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T TIGR00880        14 YSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMS   93 (141)
T ss_pred             HHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHH
Confidence            345566778999999766543322211   11122344445555566667777778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPET  165 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet  165 (200)
                      ....++..++|.+.  ..+..++...+.+.+...++..+...+ .||+
T Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        94 AGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999888  345556767777777777766655554 4553

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.89  E-value=1e-08  Score=87.82  Aligned_cols=124  Identities=18%  Similarity=0.097  Sum_probs=86.3

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+.+......++.++..+...+..+.+..|.+|.+.|.++.++..
T Consensus        64 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  143 (406)
T PRK15402         64 LQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMA  143 (406)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            34567889999999987654332221   111123344445555566566666666777889999999999999999988


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh-hcccCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST-FLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpet~~  167 (200)
                      ....++..++|.+.  ..+..+|+..+++.++.++++.+..+ ..||+++
T Consensus       144 ~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        144 NVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            88888888888887  34556788888887777777665443 4687653

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.89  E-value=4.9e-09  Score=87.71  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+....   ........+.+......++.+++.+...+....+.+|.+|.+.|+++.++..
T Consensus        45 ~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  124 (399)
T TIGR00893        45 GQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFN  124 (399)
T ss_pred             HHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4566788999999997655433221   1111223355566667777777888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~  166 (200)
                      ....++..++|.+.  ..+..+|+..+.+.++..++..+..++ .||++
T Consensus       125 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (399)
T TIGR00893       125 SAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP  173 (399)
T ss_pred             HhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence            99899999998888  366778888888887777766555444 45544

>PRK09952 shikimate transporter; Provisional

Probab=98.88  E-value=6e-09  Score=90.68  Aligned_cols=120  Identities=15%  Similarity=0.230  Sum_probs=80.8

Q ss_pred             eEEEEEecccchhHHHHHhHhhhhh-----h-ccccchHHH-HHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYDKTY-----Y-KTSRTMEYI-LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~~~~-----~-~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      ..+++.||+|||+....+.......     . ....+..+. ....++..+......+..+.+.+|.||++.|+++.++.
T Consensus       305 ~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~  384 (438)
T PRK09952        305 CFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVG  384 (438)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHH
Confidence            3467899999997655332221110     1 112222222 22333444555666778899999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHH-H-Hhhc--CchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        120 SMCAR-LSAALTPLIG-L-MDSF--DKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       120 ~~~~~-i~~~~~p~i~-~-~~~~--~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ++++. +++.++|++. . .+..  ++..++.+.++.++++.+..+.++|++
T Consensus       385 ~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        385 YQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            99987 8999999998 3 3322  356677777778888877777777754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.88  E-value=1.7e-08  Score=86.69  Aligned_cols=122  Identities=12%  Similarity=0.041  Sum_probs=89.4

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      .+..+.+.||+|||+.+..+......   ......+.+......++.++..+...+....+.+|.+|.+.|+++.++...
T Consensus        72 ~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~  151 (394)
T PRK10213         72 SLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFG  151 (394)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHH
Confidence            34557888999999876644332222   112244566667777787888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh-hcccCC
Q psy10821        122 CARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST-FLPETW  166 (200)
Q Consensus       122 ~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpet~  166 (200)
                      ...++..++|.+.  +.+..+|+..+.+.++++++..+... ..||.+
T Consensus       152 ~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        152 AVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            8889988989888  35567888888887766665544433 357754

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.87  E-value=2.3e-08  Score=86.85  Aligned_cols=122  Identities=15%  Similarity=0.154  Sum_probs=85.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+......   ......+...+....++.++..+..++....+++|.||.+.|++++++.+
T Consensus        74 ~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~  153 (434)
T PRK11663         74 SKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWN  153 (434)
T ss_pred             HHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHH
Confidence            567789999999999766543332222   11123333444444555566666667778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHH-HHhhcccC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGI-LSTFLPET  165 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet  165 (200)
                      ....+++.++|.+.  ..+..+|+..+++.++.+++..+ ..+++||+
T Consensus       154 ~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        154 TAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999998877  45667888888887776665443 33345543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.87  E-value=5.1e-09  Score=96.68  Aligned_cols=123  Identities=16%  Similarity=0.220  Sum_probs=89.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.++.+.+.||+|||+.+..+.+....   ......+.+.+.+..++.+++.++..+..+.+++|.+|.+.|++..++..
T Consensus       218 G~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~  297 (742)
T TIGR01299       218 GAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC  297 (742)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            556678999999999776644332211   11123345566777888888888889999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH--HHhh-------------cCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDS-------------FDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ....+++.+++.+.  +...             .+|+..+++.++.+++..+..+++||++
T Consensus       298 ~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESP  358 (742)
T TIGR01299       298 MFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESP  358 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            88888888888765  2221             2456666666666666666677789984

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.87  E-value=1.9e-08  Score=86.93  Aligned_cols=124  Identities=16%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+...++...++.+++.+......+.+..|.||.+.|.+.+++..
T Consensus        67 ~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (413)
T PRK15403         67 LQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIIT  146 (413)
T ss_pred             HHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45667899999999987664433221   222224455566666677666665555666788999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS-TFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~  167 (200)
                      ....++..++|.+.  +.+..+|+..|++.++..++..+.. +.+||+++
T Consensus       147 ~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        147 SIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99888888999887  3556688899988888777766553 45788754

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.85  E-value=2.8e-09  Score=91.63  Aligned_cols=127  Identities=19%  Similarity=0.246  Sum_probs=85.0

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhc-----ccc------chHHHHHHHHHHHHHHhhhhhhHHHhhccccchh
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYK-----TSR------TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTV  110 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~-----~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~  110 (200)
                      .++.+.+.||+|||+....+......   ...     ...      ...+.....++...+..+..+....+.+|.+|++
T Consensus       336 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  415 (481)
T TIGR00879       336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS  415 (481)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence            34457788999999765533221111   111     111      1112222333333334444566778889999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCCCCCch
Q psy10821        111 LRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETWNMVCD  171 (200)
Q Consensus       111 vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~~l~  171 (200)
                      .|+++.++......+++.++|.+.  ..++.++...+.+.+++++++.++.++ .||+|+++.+
T Consensus       416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       416 LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            999999999999999999999888  356667778888888888887776654 6999887664

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.85  E-value=5e-09  Score=91.46  Aligned_cols=123  Identities=14%  Similarity=0.047  Sum_probs=87.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhhhc---c---------ccc---hHHHHHHHHHHHHHHhhhhhhHHHhhccccc
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTYYK---T---------SRT---MEYILYIVFFGKFCIAGSFAVIYNYSAELFP  108 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~---~---------~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~sElfP  108 (200)
                      |.++.+.+.||+|||+++..+.........   .         ..+   ...+....++.+++.++..+....+++|.+|
T Consensus        71 ~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~  150 (479)
T PRK10077         71 GGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP  150 (479)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC
Confidence            556678899999999776543222111100   0         111   2344667788888889999999999999999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHH-H---------hhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        109 TVLRNTGLGVGSMCARLSAALTPLIGL-M---------DSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       109 t~vR~tg~~l~~~~~~i~~~~~p~i~~-~---------~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      .+.|++.+++......++..+++.+.. .         ...+|+..+.+.++..++..+..+++||++
T Consensus       151 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~  218 (479)
T PRK10077        151 AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP  218 (479)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            999999999987777777777766542 1         245788888887777777666666788875

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.84  E-value=2.5e-08  Score=84.98  Aligned_cols=123  Identities=11%  Similarity=0.024  Sum_probs=87.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+++..+.....   .......+.+.+....++.+++.+...+....+..|.+|.+.|++..++..
T Consensus        54 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
T PRK10091         54 GAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMV  133 (382)
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHH
Confidence            45666888999999977664333222   222224456666666777777777667777888999999999999999888


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS-TFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~  166 (200)
                      ....++..++|.+.  ..+..+|+..+.+.++..++..+.. ..+||.+
T Consensus       134 ~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        134 SGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            77778888888776  3456788888888777766655443 4467754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.84  E-value=1.3e-08  Score=86.27  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=86.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.++.+.+.||+|||+.+..+....   ........+...+....++.+++.+..++....+.+|.+|.+.|++..++..
T Consensus        63 ~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  142 (405)
T TIGR00891        63 GALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLI  142 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHH
Confidence            5567789999999997766433222   1122223445556666777777777888888999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH--HHhhcC--chHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFD--KRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~--~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ....++..++|.+.  .....+  |+..+.+.++..++..+.....||++
T Consensus       143 ~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       143 SGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            88888988888887  233344  67777665555555544455568764

>KOG0255|consensus

Probab=98.83  E-value=2.2e-08  Score=88.90  Aligned_cols=121  Identities=17%  Similarity=0.111  Sum_probs=95.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.++.+.+.||+|||+++..+......   ....+.+.+...+..++.+++.++...+.+.+.+|+++++.|+.+..+ .
T Consensus       134 G~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~  212 (521)
T KOG0255|consen  134 GSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-G  212 (521)
T ss_pred             HHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-H
Confidence            556678999999999887755443332   223367788889999999999999999999999999999999999999 8


Q ss_pred             HHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        121 MCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ...+.++.+.|... ...+ +|+..+++..+...+..+..++.||++
T Consensus       213 ~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  213 GFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            88777777666666 4333 888888888888877777655556875

>PRK03699 putative transporter; Provisional

Probab=98.83  E-value=5.1e-09  Score=89.63  Aligned_cols=117  Identities=10%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.+..+.+.||+|||+.+..+......   ......+........++.+++.+...+....+++|.+|.+.|++..++.+
T Consensus        58 ~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~  137 (394)
T PRK03699         58 SIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTD  137 (394)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHH
Confidence            456678899999999776544332211   11223344455556666666666667777889999999999999999888


Q ss_pred             HHHHHHHHHHHHHH--HH-hhcCchHHHHHHHHHHHHHHHHHh
Q psy10821        121 MCARLSAALTPLIG--LM-DSFDKRIPTTIFATITLMSGILST  160 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~-~~~~~~~~~~~~~~~~~~~~i~~~  160 (200)
                      ....+++.+.|.+.  .. +..+|+..+.+.+++.++..+..+
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        138 SFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888876  23 346788888887777666555443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.83  E-value=1.3e-08  Score=88.32  Aligned_cols=123  Identities=15%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhhh---hhhccccchH--------HHHHHHHHHHHHHhhhhhhHHHhhccccchhH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTME--------YILYIVFFGKFCIAGSFAVIYNYSAELFPTVL  111 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v  111 (200)
                      .|.++.+.+.||+|||+.+..+.....   .......+..        .++...++.++..+..++....+++|.+|++.
T Consensus        71 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  150 (434)
T PRK15075         71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR  150 (434)
T ss_pred             hHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence            355677899999999987664332221   1111222222        23455666666666677777899999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHH----------HhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        112 RNTGLGVGSMCARLSAALTPLIGL----------MDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       112 R~tg~~l~~~~~~i~~~~~p~i~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      |++..++......++..+++.+..          ....+|+.++++......+........||+
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~  214 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEET  214 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999987776655555444431          245778888876444332222222234664

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.82  E-value=9e-09  Score=90.81  Aligned_cols=124  Identities=16%  Similarity=0.073  Sum_probs=86.0

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhhhh---hhccccchH--------HHHHHHHHHHHHHhhhhhhHHHhhccccchhH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTME--------YILYIVFFGKFCIAGSFAVIYNYSAELFPTVL  111 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v  111 (200)
                      .|.++.+.+.||+|||+++..+......   .....++..        .++...++.+++.++.++....+++|.+|.+.
T Consensus        72 ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~  151 (490)
T PRK10642         72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK  151 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence            4677789999999999877654332222   112223322        25667778888888999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH-H---------HhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        112 RNTGLGVGSMCARLSAALTPLIG-L---------MDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       112 R~tg~~l~~~~~~i~~~~~p~i~-~---------~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      |++..++......+|..+++.+. .         ..+++|+..|++.+..++++.++...+||+.
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            99998887766556655555443 1         1257899998887666665555555678864

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.82  E-value=2.2e-08  Score=86.51  Aligned_cols=124  Identities=13%  Similarity=0.062  Sum_probs=90.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+....   .......++...+....++.+++.+...+....+++|.||.+.|++..++..
T Consensus        59 ~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  138 (412)
T TIGR02332        59 CGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFM  138 (412)
T ss_pred             HHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            3455678899999997765433222   1222224556667777888888888888888889999999999999999998


Q ss_pred             HHHHHHHHHHHHHH-HHh-------hcCchHHHHHHHHHHHHHHHH-HhhcccCCC
Q psy10821        121 MCARLSAALTPLIG-LMD-------SFDKRIPTTIFATITLMSGIL-STFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~~~-------~~~~~~~~~~~~~~~~~~~i~-~~~lpet~~  167 (200)
                      ....++..++|.+. ...       ..+|+..+++.++.+++..++ .+++||+++
T Consensus       139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       139 IAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            88888888888887 222       357888888887777665444 445688764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.81  E-value=3.2e-08  Score=82.40  Aligned_cols=118  Identities=10%  Similarity=-0.021  Sum_probs=84.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccc-----cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTS-----RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      +.+..+.+.||+|||+.+..+.....   ......     .+.+......++.+++.+...+....+.+|.+|.+.|++.
T Consensus        50 ~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (365)
T TIGR00900        50 LSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQA  129 (365)
T ss_pred             HHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            45677899999999977654322211   111111     1445556666666777777788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        116 LGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      .++......++..++|.+.  +.+..+|+..+.+.++..+++.+..+.
T Consensus       130 ~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       130 NSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999888  356678888887776666665544443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.77  E-value=2e-08  Score=84.33  Aligned_cols=124  Identities=19%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhhhh---hhccccchH--------HHHHHHHHHHHHHhhhhhhHHHhhccccchhH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTME--------YILYIVFFGKFCIAGSFAVIYNYSAELFPTVL  111 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v  111 (200)
                      .|.++.+.+.||+|||+.+..+......   ......+..        ......++.++..+...+....+.+|.+|.+.
T Consensus        50 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (394)
T TIGR00883        50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK  129 (394)
T ss_pred             hHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence            4667889999999999876644332221   111122211        23444455555666667778899999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHH-H---------hhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        112 RNTGLGVGSMCARLSAALTPLIGL-M---------DSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       112 R~tg~~l~~~~~~i~~~~~p~i~~-~---------~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      |++..++......++..+++.+.. .         ...+|+.++.+.++..+++.+.....||++
T Consensus       130 r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       130 RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            999999988877788777777651 1         345677777776666655555444556653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.77  E-value=1.2e-08  Score=88.41  Aligned_cols=124  Identities=12%  Similarity=0.068  Sum_probs=72.4

Q ss_pred             eeEEEEEecccchhHHHHHhHhh---hh-hh--ccccchHHH-HHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYD---KT-YY--KTSRTMEYI-LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~---~~-~~--~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      ++.+.+.||+|||+.........   .. ..  ....+..+. .....+..+......+..+.+.+|+||++.|+++.|+
T Consensus       297 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~  376 (432)
T PRK10406        297 PLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGL  376 (432)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhH
Confidence            34578899999996554322111   11 11  111111222 2222222233333445677899999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHH-HHhhcC-chHHHHHHHHHHHHHHHHHhhcccCCCCCc
Q psy10821        119 GSMCAR-LSAALTPLIG-LMDSFD-KRIPTTIFATITLMSGILSTFLPETWNMVC  170 (200)
Q Consensus       119 ~~~~~~-i~~~~~p~i~-~~~~~~-~~~~~~~~~~~~~~~~i~~~~lpet~~~~l  170 (200)
                      .+++++ +++...|++. .++..+ +...+++.++.++++.+..++ .++++|++
T Consensus       377 ~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~~  430 (432)
T PRK10406        377 SYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM-LHRKGKGM  430 (432)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-hhhccccc
Confidence            999988 4566788877 455455 334555555666666665555 44455554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.76  E-value=1.8e-08  Score=86.63  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=88.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh---hhhhcc---ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD---KTYYKT---SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      +.+..+.+.||+|||+.+..+....   ......   ..+.+.++...++.+++.+........+.+|.+|.+.|+++.+
T Consensus        87 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  166 (481)
T TIGR00879        87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTS  166 (481)
T ss_pred             HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhh
Confidence            4567789999999997765432211   111111   1222356667777777788888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH---HH--hhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        118 VGSMCARLSAALTPLIG---LM--DSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~---~~--~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      +......++..++|.+.   ..  ...+|+..+.+.+...++..+..+++||++
T Consensus       167 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       167 LYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP  220 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            98888889999988887   32  456788888886666666666666678764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.76  E-value=2.4e-08  Score=85.24  Aligned_cols=122  Identities=12%  Similarity=0.019  Sum_probs=86.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhhh---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTYY---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||++............   ....+..++....++.++.... ........+|.+|.+.|+++.++..
T Consensus        42 ~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~  120 (368)
T TIGR00903        42 LTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLS  120 (368)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            34556899999999976653332221111   1123556677777777766654 4455566699999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHH-HhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGIL-STFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~-~~~lpet~  166 (200)
                      ....++..++|.+.  +.+..+|+..+++.++++++..+. .+++||.+
T Consensus       121 ~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       121 FAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            98889999998887  356788999988888877776554 44568764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.75  E-value=1.5e-08  Score=87.86  Aligned_cols=125  Identities=16%  Similarity=0.111  Sum_probs=83.8

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhh---hhhhccccch--------HHHHHHHHHHHHHHhhhhhhHHHhhccccchhH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTM--------EYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL  111 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v  111 (200)
                      .|.++.+.+.||+|||+.+..+....   ........+.        ..++..+++.+++.++.++....+++|.+|.+.
T Consensus        78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  157 (432)
T PRK10406         78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR  157 (432)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence            45667788999999998766433222   1111111221        235667778888888889999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH-H---------HhhcCchHHHHHHHHHHHHHHHHHhhcccCCC
Q psy10821        112 RNTGLGVGSMCARLSAALTPLIG-L---------MDSFDKRIPTTIFATITLMSGILSTFLPETWN  167 (200)
Q Consensus       112 R~tg~~l~~~~~~i~~~~~p~i~-~---------~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~~  167 (200)
                      |++..++.+.....+..+++.+. .         ...++|+.+|++.++.+++.......+||++.
T Consensus       158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~  223 (432)
T PRK10406        158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ  223 (432)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            99988876555445555555443 1         12578999998877777666554445677643

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.73  E-value=2.5e-08  Score=87.85  Aligned_cols=119  Identities=15%  Similarity=0.190  Sum_probs=74.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.++.+.+.||+|||+.+..+.+.....   .....+...+....++.+++.+.. .....+++|.||.+.|+++.++..
T Consensus        87 ~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~  165 (476)
T PLN00028         87 SRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAA  165 (476)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHH
Confidence            4456678889999997665433222111   112333444444455555554443 334567899999999999999998


Q ss_pred             HHHHHHHHHHHHHH-----HHhh------cCchHHHHHHHHHHHHHHHHHhhcc
Q psy10821        121 MCARLSAALTPLIG-----LMDS------FDKRIPTTIFATITLMSGILSTFLP  163 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-----~~~~------~~~~~~~~~~~~~~~~~~i~~~~lp  163 (200)
                      ..+.+++.+++.+.     ....      .+|+..+++.++++++..+..++++
T Consensus       166 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        166 GWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            77666666555444     1111      3688888888888777666555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.71  E-value=2.9e-08  Score=82.93  Aligned_cols=116  Identities=13%  Similarity=0.144  Sum_probs=76.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+......   ......+.+.......+.+++.+..+.....+..|.+| +.|++..++..
T Consensus        54 ~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  132 (377)
T TIGR00890        54 SMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIII  132 (377)
T ss_pred             HhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHH
Confidence            567788999999999776543332221   11123344444555556666666666677778888888 56999999887


Q ss_pred             HHHHHHHHHH-HHHH-HHhhcCchHHHHHHHHHHHHHHHHHh
Q psy10821        121 MCARLSAALT-PLIG-LMDSFDKRIPTTIFATITLMSGILST  160 (200)
Q Consensus       121 ~~~~i~~~~~-p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~  160 (200)
                      ....++..+. |... ..+..+|+..+.+.++.+++..+..+
T Consensus       133 ~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890       133 GGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7777776654 4444 35566788888888887777655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.70  E-value=5.6e-08  Score=84.78  Aligned_cols=124  Identities=12%  Similarity=0.175  Sum_probs=90.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+...++...++.+++.+...+....++.|.+|.+.|+++.++..
T Consensus        53 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  132 (485)
T TIGR00711        53 SIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWG  132 (485)
T ss_pred             HHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            44667889999999977664332221   222224455666677777777778888889999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh-hcccCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST-FLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpet~~  167 (200)
                      ....++..++|.+.  +.+..+|+..+++.+.++++..+... ..||.+.
T Consensus       133 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            88889999999887  35667888888887777766655544 3566543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.68  E-value=1.1e-07  Score=81.78  Aligned_cols=123  Identities=12%  Similarity=0.084  Sum_probs=82.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh-----h---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK-----T---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      +.+..+.+.||+|||+.+..+.....     .   ......+..++....++.+++.+...+....+.+|.+|.+.|+++
T Consensus        68 ~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (417)
T PRK10489         68 GLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQA  147 (417)
T ss_pred             HHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHH
Confidence            45677899999999965442211110     0   111122334444455555555555666778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        116 LGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      .++......++..++|.+.  +.+..++.+.+.+.++..++..+..+.+||++
T Consensus       148 ~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        148 GAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9998888889999999888  35556777777776666666666666677653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.67  E-value=4.3e-08  Score=85.61  Aligned_cols=119  Identities=9%  Similarity=0.023  Sum_probs=87.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hh--ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YY--KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      +.+.++.+.||+|||+.+..+......   ..  ....+....+...++.+++.+..++....+.+|.+|.+.|++..++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            456678899999999766543322211   11  1122334566677777888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhh-cCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        119 GSMCARLSAALTPLIG--LMDS-FDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~-~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ......++..++|.+.  +... .+|+..+++.++.+++..+..++.
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            9998899999988887  3455 388889988888777766655543

>PRK10054 putative transporter; Provisional

Probab=98.66  E-value=1.2e-07  Score=81.53  Aligned_cols=123  Identities=8%  Similarity=0.045  Sum_probs=82.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+......   ......+.+.......+.........+....+.+|.+|.+.|+++.++.+
T Consensus        59 ~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  138 (395)
T PRK10054         59 FSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNY  138 (395)
T ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence            346678999999999766543322211   11122233333333333344444556667888999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCC
Q psy10821        121 MCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILS-TFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~  166 (200)
                      ....++..++|.+. .+...+++..+.+.+++.++..+.. +++||++
T Consensus       139 ~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        139 TMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999888 4445678888888777777765544 3356553

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.7e-08  Score=86.53  Aligned_cols=116  Identities=11%  Similarity=0.088  Sum_probs=89.8

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhhh---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTYY---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++.+.+.||.+.|..+..+++.+....   ..+.+...+.+...+-+.+++..++++.-.++-.||.+.|++..|+=+..
T Consensus        82 f~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~s  161 (448)
T COG2271          82 FVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTS  161 (448)
T ss_pred             HHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhh
Confidence            566899999999976665555444322   23444455566666778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH----HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        123 ARLSAALTPLIG----LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       123 ~~i~~~~~p~i~----~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      .++||.+.|.+.    ...+.+|+..|++-++++++..++.++
T Consensus       162 hNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         162 HNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             hhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            999888877776    245568889999988888886666555

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.64  E-value=2.9e-07  Score=79.20  Aligned_cols=121  Identities=12%  Similarity=0.071  Sum_probs=84.6

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      .+..+.+.||+|||+.+..+......   ......+.+++....++.++..+...+....++.|.+|.+.|+++.|+...
T Consensus        63 ~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  142 (400)
T PRK11646         63 GIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMM  142 (400)
T ss_pred             HhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            35678999999999776643332221   112233444555555555666556667778889999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHH-HhhcccC
Q psy10821        122 CARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGIL-STFLPET  165 (200)
Q Consensus       122 ~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~-~~~lpet  165 (200)
                      ...++..++|.+. .+...+++..+++.+...++..+. ..+.||.
T Consensus       143 ~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        143 QDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999888 444677888888777766665444 3445664

>TIGR00895 2A0115 benzoate transport

Probab=98.64  E-value=3.7e-08  Score=82.98  Aligned_cols=123  Identities=19%  Similarity=0.220  Sum_probs=86.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.++.+.+.||+|||+.+..+.....   .......+.+......++.+++.+...+....+.+|.+|.+.|+++.++..
T Consensus        68 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  147 (398)
T TIGR00895        68 GALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMF  147 (398)
T ss_pred             HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHh
Confidence            55677899999999977654332221   111223344455555666667777778889999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHH-HHhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGI-LSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet~  166 (200)
                      ....++..++|.+.  +.+..+++..+.+.++...+..+ ...++||+.
T Consensus       148 ~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       148 CGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            88889999999887  35566777777777655554443 444567653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.63  E-value=2.8e-07  Score=78.56  Aligned_cols=121  Identities=19%  Similarity=0.071  Sum_probs=79.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.++.+.+.||+|||+.+..+......   ......+.+......++.++.. +..+....+..|.+|.+.|++..++..
T Consensus        70 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (408)
T PRK09874         70 ASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLS  148 (408)
T ss_pred             HHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHH
Confidence            345567899999999776543322211   1112333444444555554443 345566678889999999999999998


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh-hcccC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST-FLPET  165 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpet  165 (200)
                      ....++..++|.+.  +.+..+++..+.+.++..++..+... +.||.
T Consensus       149 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        149 TGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88888888888888  34567788888877777666555443 34553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.63  E-value=3.1e-08  Score=81.72  Aligned_cols=157  Identities=22%  Similarity=0.209  Sum_probs=102.3

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+....+......   ......+........++.++..+...+....+.+|.+|.+.|++..++..
T Consensus        50 ~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (352)
T cd06174          50 GSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFS  129 (352)
T ss_pred             HHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHH
Confidence            456678899999999766543332221   11123444555666666677777778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcc-cC------------------------CCCC-chH
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLP-ET------------------------WNMV-CDR  172 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-et------------------------~~~~-l~~  172 (200)
                      ....++..++|.+.  ..+..+++..+.+.++..++..+...+.+ ..                        ..+. -.+
T Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (352)
T cd06174         130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS  209 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999888  35555677777666665555444333222 00                        0000 001


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhccccCC
Q psy10821        173 RWMLAVAQMTYMFGVFTGAVTLGSLADK  200 (200)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~  200 (200)
                      ..+.........++..++..+.|+++||
T Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~  237 (352)
T cd06174         210 AAEAGLLLSLFGLGGILGALLGGLLSDR  237 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112233456677888888888888876

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=98.63  E-value=5.1e-08  Score=84.86  Aligned_cols=123  Identities=13%  Similarity=0.048  Sum_probs=81.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh---hhhhccccchH--------HHHHHHHHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTME--------YILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      |.++.+.+.||+|||+.+..+....   .......++..        .++..+++.++..++.++....+.+|.+|.+.|
T Consensus        80 g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r  159 (438)
T PRK09952         80 GGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKK  159 (438)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCC
Confidence            4555688999999998766433222   21112222322        255567777888888888889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HH---------hhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        113 NTGLGVGSMCARLSAALTPLIG-LM---------DSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       113 ~tg~~l~~~~~~i~~~~~p~i~-~~---------~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ++..+.......++..+++.+. .+         ..++|+.++++.++..++........||++
T Consensus       160 g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~  223 (438)
T PRK09952        160 AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA  223 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            9888877666556666665443 11         246888888887766555444334457764

>KOG0569|consensus

Probab=98.62  E-value=6.7e-08  Score=85.02  Aligned_cols=124  Identities=19%  Similarity=0.154  Sum_probs=92.3

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---h---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---Y---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      |.+.++.+.||+|||..+....++...   .   .........++...++.+...+...+..+.|..|+-|.+.|+....
T Consensus        76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~  155 (485)
T KOG0569|consen   76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT  155 (485)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence            667778999999999554432222211   1   1123456677888999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHH---H-hhcCchHHHHHHHHHHHHHHHHHhhcccCCC
Q psy10821        118 VGSMCARLSAALTPLIGL---M-DSFDKRIPTTIFATITLMSGILSTFLPETWN  167 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~~---~-~~~~~~~~~~~~~~~~~~~~i~~~~lpet~~  167 (200)
                      +......++-.++..+.+   + .+..|++.+....+.+++..+...++||+.+
T Consensus       156 ~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  156 LLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK  209 (485)
T ss_pred             HHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            887777777777766652   3 3444777777778888888888889999853

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.62  E-value=2.1e-07  Score=78.04  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hcccc-chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSR-TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +.+..+.+.||+|||+.+..+.......   ..... +.+......++.++.. +.+.....+++|.+|.+.|++..++.
T Consensus        53 ~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~  131 (366)
T TIGR00886        53 LRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLA  131 (366)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHH
Confidence            4567789999999997665433322221   11223 4444455555555543 34556678999999999999999998


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10821        120 SMCARLSAALTPLIG  134 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~  134 (200)
                      .....++..+++.+.
T Consensus       132 ~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       132 AGWGNMGGGVAQFVM  146 (366)
T ss_pred             HHHhHHHHHHHHHHH
Confidence            876666665555554

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.61  E-value=6.2e-08  Score=83.34  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=83.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.+..+.+.||+|||+.+..+......   ......+........++.+++.+..++....+.+|.+|.+.|+++.++..
T Consensus        69 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  148 (426)
T PRK12307         69 GGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLV  148 (426)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHH
Confidence            456678899999999877644332222   11223445556666777777778888888999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ....++..++|.+.  +.+..+|+..+++.....++........||++
T Consensus       149 ~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        149 SGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESK  196 (426)
T ss_pred             HHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence            87778888888776  34556788877764433333222222346653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.60  E-value=2.7e-07  Score=79.21  Aligned_cols=120  Identities=13%  Similarity=0.033  Sum_probs=80.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      ..++.+.+.||+|||+++..+.....   .......+   .....++.+++.+...+....+++|++|.+.|+++.|+..
T Consensus        54 ~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~  130 (393)
T PRK11195         54 LAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWME  130 (393)
T ss_pred             HHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            45778899999999987654332211   11111111   1445566677788888889999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        121 MCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ....++..++|.+. .+.+..+...+.+.+...+++.+....+||.+
T Consensus       131 ~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        131 GSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            88888889999988 33333344445444444444444455567654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.60  E-value=1.3e-07  Score=81.12  Aligned_cols=112  Identities=11%  Similarity=-0.005  Sum_probs=77.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+++..+......   .....++...++...++.+++.+........++.|.|| +.|++..++..
T Consensus        60 ~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~  138 (393)
T PRK09705         60 LALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWS  138 (393)
T ss_pred             HhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHH
Confidence            456678889999999887754433322   22234556666777888888888888888889999998 77999999988


Q ss_pred             HHHHHHHHHHHHHH-H-Hhh-cCchHHHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG-L-MDS-FDKRIPTTIFATITLMSG  156 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~-~~~-~~~~~~~~~~~~~~~~~~  156 (200)
                      ....+++.+++.+. . .+. .+|+..+.++++..++..
T Consensus       139 ~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        139 AALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            77777777777766 2 333 256666655555444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.60  E-value=2.7e-08  Score=83.20  Aligned_cols=123  Identities=9%  Similarity=0.075  Sum_probs=85.9

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      .+.+..+.+.||+|||+.+..+.....   .......+.+......++.+++.+...+....+.+|.+|.+.|++..++.
T Consensus        45 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  124 (379)
T TIGR00881        45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFW  124 (379)
T ss_pred             hhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeeh
Confidence            356778999999999976654433221   11122334455566666667777777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HH--HHhhcCchHHHHHHHHHHHHHHHH-HhhcccC
Q psy10821        120 SMCARLSAALTPL-IG--LMDSFDKRIPTTIFATITLMSGIL-STFLPET  165 (200)
Q Consensus       120 ~~~~~i~~~~~p~-i~--~~~~~~~~~~~~~~~~~~~~~~i~-~~~lpet  165 (200)
                      .....+++.++|. +.  .....+|+..+.+.+++.++..+. ..+.||+
T Consensus       125 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             hccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            8888899998884 44  345567888877777666665444 3344554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.60  E-value=4.1e-07  Score=80.43  Aligned_cols=123  Identities=19%  Similarity=0.096  Sum_probs=88.3

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhcccc-chhHHhHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELF-PTVLRNTGLGVGS  120 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElf-Pt~vR~tg~~l~~  120 (200)
                      .+..+.+.||+|||+.+..+......   ......+.+.++....+.+++.+...+.....+.+.+ |.+.|+++.|+..
T Consensus        58 ~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~  137 (495)
T PRK14995         58 VLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWA  137 (495)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35568899999999877654432222   2222455666666777777777776666666666665 7899999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS-TFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~  167 (200)
                      ....++..++|.+.  +.+..+|++.|++...++++..+.. .++||.++
T Consensus       138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999998  4567789998888777777665544 34576543

>PRK11043 putative transporter; Provisional

Probab=98.60  E-value=4.4e-07  Score=77.60  Aligned_cols=122  Identities=16%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+......   ......+.+......++.+++..........+.+|.+|.+.|.+..+...
T Consensus        57 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (401)
T PRK11043         57 GQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIM  136 (401)
T ss_pred             HHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            567789999999999876644332221   11223344445555555555555555556678899999999999888888


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      ....+++.++|.+.  ..+..+|+..+++.++..++..+..++.+|.
T Consensus       137 ~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        137 PLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            87778888888887  3566788888888877777766666555543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.59  E-value=1.9e-07  Score=81.16  Aligned_cols=122  Identities=10%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hcc----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKT----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      +.+..+.+.||+|||+....+.......   ...    ..+........++.+++.+..++....+..|.+|.+.|+++.
T Consensus        77 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~  156 (438)
T TIGR00712        77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV  156 (438)
T ss_pred             hhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence            5677899999999997655332221111   111    112222334445556666666777788889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHh-hcCchHHHHHHHHHHHHHHHH-HhhcccC
Q psy10821        117 GVGSMCARLSAALTPLIG--LMD-SFDKRIPTTIFATITLMSGIL-STFLPET  165 (200)
Q Consensus       117 ~l~~~~~~i~~~~~p~i~--~~~-~~~~~~~~~~~~~~~~~~~i~-~~~lpet  165 (200)
                      ++.+....+++.++|.+.  ... ..+|+..+++.++.+++..+. .+++||+
T Consensus       157 ~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       157 SIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            998888888888877665  233 357888888888777775544 4445654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.58  E-value=9.9e-08  Score=83.72  Aligned_cols=123  Identities=17%  Similarity=0.091  Sum_probs=84.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+.+.+....++.+++.++.++....++.|.+|.+.|+++.++..
T Consensus        71 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  150 (496)
T PRK03893         71 GGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI  150 (496)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            34566889999999986654332221   111223445556666777777778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ....++..++|.+.  ..+..+|+..+.+.+...++..+.....||.+
T Consensus       151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~  198 (496)
T PRK03893        151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAE  198 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            88889999999888  35566777776654433333333334456653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.57  E-value=6.4e-07  Score=86.19  Aligned_cols=91  Identities=9%  Similarity=-0.089  Sum_probs=67.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh----hhh--hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD----KTY--YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      +.+.++.+.||+|||+++..+....    ...  .....+.+.+.+..++.+++.+...+....+++|++|.+.|+++.|
T Consensus        63 ~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  142 (1146)
T PRK08633         63 LSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANG  142 (1146)
T ss_pred             HhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhh
Confidence            5567899999999998765432211    111  1112334455666666777777788888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10821        118 VGSMCARLSAALTPLIG  134 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~  134 (200)
                      +......++..++|.+.
T Consensus       143 ~~~~~~~ig~~lg~~l~  159 (1146)
T PRK08633        143 LLEAFTIVAILAGTALF  159 (1146)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988887

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.57  E-value=3.3e-07  Score=79.98  Aligned_cols=122  Identities=8%  Similarity=0.048  Sum_probs=78.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhcc----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKT----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      +.+..+.+.||+|||+++..+.....   .....    ..+........++.+++.+..++.....+.|.+|.+.|+++.
T Consensus        79 ~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~  158 (452)
T PRK11273         79 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV  158 (452)
T ss_pred             HHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHH
Confidence            55778999999999976654332211   11111    123334455555666666666676777889999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHH--HHhhcCchHHHHHHHHHHHHHHH-HHhhcccC
Q psy10821        117 GVGSMCARLSAA-LTPLIG--LMDSFDKRIPTTIFATITLMSGI-LSTFLPET  165 (200)
Q Consensus       117 ~l~~~~~~i~~~-~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet  165 (200)
                      ++......+++. ..|.+.  .....+|+..+++.++++++..+ ..+++||+
T Consensus       159 ~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        159 SVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            997776667764 455543  22334777788877776666544 44455664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.56  E-value=2.4e-07  Score=79.08  Aligned_cols=127  Identities=13%  Similarity=0.027  Sum_probs=85.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +..+.+.||+|||+....+......   ......+........++.+++.+..++.......|.+|.+.|+++.++....
T Consensus       267 ~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (399)
T PRK05122        267 LLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF  346 (399)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4456778999998765533222111   1111223333344444555566666666677788999999999999999888


Q ss_pred             HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q psy10821        123 ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDR  172 (200)
Q Consensus       123 ~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~~~~l~~  172 (200)
                      ..+++.++|.+.  ..+..++...+.+.+++.+++.+...++++.++|+.+|
T Consensus       347 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (399)
T PRK05122        347 LDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE  398 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            888888777776  45667778888888888888777777777666655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.55  E-value=2.3e-07  Score=76.91  Aligned_cols=115  Identities=19%  Similarity=0.156  Sum_probs=87.3

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.......   .....+.+......++.+++.+...+....+++|.+|.+.|++..++..
T Consensus        48 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  127 (352)
T PF07690_consen   48 FSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILS  127 (352)
T ss_dssp             HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence            3456688899999998665443322221   1112344466777777888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGIL  158 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i~  158 (200)
                      ....++..++|.+. . .+..+|+..+++.+++.++..++
T Consensus       128 ~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  128 AGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            99999999999998 3 45667888888888888887764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.54  E-value=4.3e-07  Score=87.67  Aligned_cols=123  Identities=12%  Similarity=0.047  Sum_probs=86.3

Q ss_pred             CeeeEEEEEecccchhHHH----HHhHhhh--hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTC----HSWVYDK--TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      ..++++.+.||+|||+++.    .......  .......+.+.+++..++.+++.+...+....++.|++|.+.|.+++|
T Consensus        68 ~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~  147 (1140)
T PRK06814         68 FSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANA  147 (1140)
T ss_pred             HhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhH
Confidence            4466799999999997532    1111111  111112455666777777788888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        118 VGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      +......++..++|.+.  +....+|...+....+..+++.++.+++|+++
T Consensus       148 ~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        148 LVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999998  34556666666444444445555556666543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.52  E-value=3.3e-07  Score=78.92  Aligned_cols=131  Identities=11%  Similarity=-0.077  Sum_probs=83.9

Q ss_pred             eEEEEEecccchhHHHHHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCA  123 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~  123 (200)
                      +.+++.||.++++.+..+....   ........+........++.+++..........+..|..|.+.|+++.|+.+...
T Consensus       278 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  357 (417)
T PRK10489        278 TSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQN  357 (417)
T ss_pred             HHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence            3456677766654433222211   1111122333233333444444444455566788999999999999999999988


Q ss_pred             HHHHHHHHHHH--HHhhcCchHHHHHHHHHHHH-HHHHHhhcccCCCCCchHHHHHH
Q psy10821        124 RLSAALTPLIG--LMDSFDKRIPTTIFATITLM-SGILSTFLPETWNMVCDRRWMLA  177 (200)
Q Consensus       124 ~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~-~~i~~~~lpet~~~~l~~~~~~~  177 (200)
                      .+++.++|.+.  +.+..+....+...++..++ +.+....+||+|+++.+|..+|.
T Consensus       358 ~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (417)
T PRK10489        358 VTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA  414 (417)
T ss_pred             hhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            89999999998  35566766666666655555 44555667999999988876654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.50  E-value=1.5e-07  Score=83.31  Aligned_cols=116  Identities=8%  Similarity=0.011  Sum_probs=75.3

Q ss_pred             CeeeEEEEEecc-cchhHHHHHhHhhhhhh-c--ccc-chHHHHHHHHHHHHHHhhhhhhHHHhhccccchh--HHhHHH
Q psy10821         44 GKFESCRMFDAF-TNKTMTCHSWVYDKTYY-K--TSR-TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTV--LRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~-GRr~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~--vR~tg~  116 (200)
                      +.++++++.||+ |||+....+........ .  ... ..........+..++.+...+....+++|+||++  .|.++.
T Consensus        61 ~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf  140 (493)
T PRK15462         61 TPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF  140 (493)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence            345678999999 99987664433222111 1  111 1122222222222333444456678999999986  799999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH
Q psy10821        117 GVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS  159 (200)
Q Consensus       117 ~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~  159 (200)
                      ++.|+.+++++.++|.+.  +.++.+|+..|...++..+++.+..
T Consensus       141 ~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        141 SLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999  3567788888887665555544443

>KOG0254|consensus

Probab=98.50  E-value=1.9e-07  Score=83.05  Aligned_cols=124  Identities=16%  Similarity=0.155  Sum_probs=92.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhH-hhh--hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWV-YDK--TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.+.++.+.|++|||..+..+.+ +..  .......+..++.+.+++.+++.++...+.+.|.+|+-|++.|+.-.+...
T Consensus       105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~  184 (513)
T KOG0254|consen  105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ  184 (513)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence            56777889999999966553322 222  222234577888999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHH-Hhh--cCchHHHHHHHHHHHHHHHHHhhcccCCC
Q psy10821        121 MCARLSAALTPLIGL-MDS--FDKRIPTTIFATITLMSGILSTFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~~-~~~--~~~~~~~~~~~~~~~~~~i~~~~lpet~~  167 (200)
                      ....++..++-.+.. ..+  .+|+.++....+.+++..+..++.||+.+
T Consensus       185 l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~  234 (513)
T KOG0254|consen  185 LFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPR  234 (513)
T ss_pred             HHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            887766555522223 222  37888888888888888777777898753

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.49  E-value=1.4e-06  Score=74.32  Aligned_cols=124  Identities=12%  Similarity=0.076  Sum_probs=83.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   .......+...+....++.+++.+........+..|.+|.+.|++..++..
T Consensus        59 ~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (394)
T PRK11652         59 SQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLN  138 (394)
T ss_pred             HHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45678999999999987654332221   111223344555555666666555555666778899999999999988877


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHH-HHhhcccCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGI-LSTFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet~~  167 (200)
                      ....++..++|.+.  +.+..+|+..+.+.++..++..+ ..++.||++.
T Consensus       139 ~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        139 MGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            66668888888887  34556788888887766655444 3445687643

>PRK12382 putative transporter; Provisional

Probab=98.49  E-value=1.3e-06  Score=74.45  Aligned_cols=108  Identities=10%  Similarity=0.013  Sum_probs=70.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hh----cc----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YY----KT----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      +.+..+.+.||+|||+.+..+......   ..    ..    ..+...+....++.+++.+...+....+..|.+|.+.|
T Consensus        67 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  146 (392)
T PRK12382         67 TRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHS  146 (392)
T ss_pred             HhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence            456779999999999876643222111   10    00    12334455556666666666666677888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHH
Q psy10821        113 NTGLGVGSMCARLSAALTPLIG-L-MDSFDKRIPTTIFATI  151 (200)
Q Consensus       113 ~tg~~l~~~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~  151 (200)
                      +++.++......++..++|.+. . .+..++...+.+..+.
T Consensus       147 ~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        147 GKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            9999998766667888888887 3 4556666554444333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.47  E-value=1.3e-06  Score=74.64  Aligned_cols=121  Identities=9%  Similarity=-0.025  Sum_probs=78.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhh-c--ccc-----chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYY-K--TSR-----TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~-~--~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      +.+..+.+.||+|||+++..+.....   ... .  ...     +...++...++.+++.+........+..|.+|.+.|
T Consensus        67 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  146 (399)
T PRK05122         67 SRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHT  146 (399)
T ss_pred             hchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhh
Confidence            45678999999999987664432211   111 1  111     122345556666677777777778888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhccc
Q psy10821        113 NTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPE  164 (200)
Q Consensus       113 ~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpe  164 (200)
                      +++.++......++..++|.+.  +.+..++...+.+.++..++..+.....|+
T Consensus       147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  200 (399)
T PRK05122        147 GRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPA  200 (399)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999987766667777778876  356677777666655554444333333344

>PRK10504 putative transporter; Provisional

Probab=98.47  E-value=9.8e-07  Score=77.07  Aligned_cols=122  Identities=13%  Similarity=0.075  Sum_probs=88.3

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+....+.....   .......+.+......++.+++.+...+....+..|.+|.+.|+++.++..
T Consensus        61 ~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (471)
T PRK10504         61 MLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVT  140 (471)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            45677889999999976654322211   111223445556666777777777778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPET  165 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet  165 (200)
                      ....++..++|.+.  ..+..+|+..+.+....+.+..+.... .|+.
T Consensus       141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            88889999998888  356678888888877766666555444 3544

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.46  E-value=2.8e-06  Score=75.24  Aligned_cols=123  Identities=14%  Similarity=0.173  Sum_probs=85.6

Q ss_pred             CeeeEEEEEecc-----cchhHHH-HHhH---hhhh--hhcc-ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH
Q psy10821         44 GKFESCRMFDAF-----TNKTMTC-HSWV---YDKT--YYKT-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL  111 (200)
Q Consensus        44 G~~~~~~l~Dr~-----GRr~~~~-~~~~---~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v  111 (200)
                      +.++.+.+.||+     |||+..+ .+..   ....  .... ..+..+.....++..++.+........+.+|.+|.+.
T Consensus        61 ~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~  140 (491)
T PRK11010         61 FKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE  140 (491)
T ss_pred             HHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            345567888999     9986422 2111   1111  1111 2234455556666667777777788899999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH-H-Hh-hcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        112 RNTGLGVGSMCARLSAALTPLIG-L-MD-SFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       112 R~tg~~l~~~~~~i~~~~~p~i~-~-~~-~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      |+++.++......++..+++.+. . .+ ..+|+..+++.++..++..+..++.||++
T Consensus       141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999988888888888777 3 34 35899999998888777766666677763

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.46  E-value=1.8e-06  Score=72.63  Aligned_cols=122  Identities=12%  Similarity=0.033  Sum_probs=74.9

Q ss_pred             eeeEEEEEecccchhHHH-HHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH--HHH
Q psy10821         45 KFESCRMFDAFTNKTMTC-HSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG--LGV  118 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg--~~l  118 (200)
                      .+..+.+.||+|||+.+. .+.....   .......+.+.+.....+.....+...+....+..|..|.+.|..+  .+.
T Consensus        50 ~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  129 (375)
T TIGR00899        50 SQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSV  129 (375)
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHH
Confidence            345578899999886433 2222211   1112233333344444444444444555666778898888877755  466


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCC
Q psy10821        119 GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETW  166 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~  166 (200)
                      ......++..++|.+.  +.+..+|+..+++.+...++..+..++ +||.+
T Consensus       130 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       130 MRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            6666668888888877  345678888998888877776655444 67654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG1330|consensus

Probab=98.46  E-value=3.4e-09  Score=91.55  Aligned_cols=120  Identities=18%  Similarity=0.125  Sum_probs=91.4

Q ss_pred             eeeEEEEEecccchhHHHH---HhHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCH---SWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      +++++++.||+.||.+++.   .|....+....+.+.+.++....+.+++.+.+.+..+.+++++||-..|+++.++.|.
T Consensus        85 sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~  164 (493)
T KOG1330|consen   85 SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF  164 (493)
T ss_pred             HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence            3667899999999987763   3544444444455566678889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-H-H-hhcCchHHHHHHHHHHHHHHHHHhh-ccc
Q psy10821        122 CARLSAALTPLIG-L-M-DSFDKRIPTTIFATITLMSGILSTF-LPE  164 (200)
Q Consensus       122 ~~~i~~~~~p~i~-~-~-~~~~~~~~~~~~~~~~~~~~i~~~~-lpe  164 (200)
                      ...+|++++-.+. . . ....|++.+...++++++.+++.++ .+|
T Consensus       165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence            9888777665554 2 2 2223888888888888887766554 443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.39  E-value=5.6e-07  Score=78.09  Aligned_cols=129  Identities=12%  Similarity=0.098  Sum_probs=74.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh----h--hc-cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT----Y--YK-TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~----~--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      |.++.+++.||+|||+....+......    .  .. .............+..++.+...+..+.+.+|.+|.+.|+++.
T Consensus       290 ~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~  369 (434)
T PRK15075        290 WLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGF  369 (434)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchhe
Confidence            344567889999999765432211110    0  11 1112222222223333444555566778899999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHH--HHhhcCchH-HHHHHHHHHHHHHHHHhhcccCCCCCchH
Q psy10821        117 GVGSMCARL-SAALTPLIG--LMDSFDKRI-PTTIFATITLMSGILSTFLPETWNMVCDR  172 (200)
Q Consensus       117 ~l~~~~~~i-~~~~~p~i~--~~~~~~~~~-~~~~~~~~~~~~~i~~~~lpet~~~~l~~  172 (200)
                      ++.++++.. ++.++|.+.  ..+..+..+ ..++.....++..+..+.+++.++.+++.
T Consensus       370 g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK15075        370 SLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQA  429 (434)
T ss_pred             eHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence            999998884 588888888  345555422 22222223334444555567766666643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.37  E-value=2e-06  Score=76.27  Aligned_cols=111  Identities=8%  Similarity=-0.080  Sum_probs=71.4

Q ss_pred             eeEEEEEec-ccchhHHHHHhHhhhhh---hccccchHH-HHHHHHHHHHHHhhhhhhHHHhhccccchhH--HhHHHHH
Q psy10821         46 FESCRMFDA-FTNKTMTCHSWVYDKTY---YKTSRTMEY-ILYIVFFGKFCIAGSFAVIYNYSAELFPTVL--RNTGLGV  118 (200)
Q Consensus        46 ~~~~~l~Dr-~GRr~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v--R~tg~~l  118 (200)
                      ++++++.|| +|||+....+.......   .....+... +.....+..++.+...+....+++|.||.+.  |.++.++
T Consensus        68 ~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~  147 (489)
T PRK10207         68 SIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTL  147 (489)
T ss_pred             hhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhH
Confidence            467899999 99998776543322221   111222222 2234444556666677778899999999885  4677888


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHH
Q psy10821        119 GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSG  156 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~  156 (200)
                      .+...+++..++|.+.  +.+..+|++.|++.++..+++.
T Consensus       148 ~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~  187 (489)
T PRK10207        148 FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIAL  187 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            7777778888887777  3556688887777544333333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.36  E-value=3e-06  Score=72.39  Aligned_cols=83  Identities=12%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-HhhcCchHHHHHHHHHHHHHHHHHh
Q psy10821         82 LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGL-MDSFDKRIPTTIFATITLMSGILST  160 (200)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~  160 (200)
                      +....+..++....++..+.+.+|.+|++.|+++.|+.+..+++++...|.+.. .. .+....+..+++..+++.+...
T Consensus       284 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       284 FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI-SSAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence            334444556666777788899999999999999999999999999999998882 22 2556677777777777776665


Q ss_pred             hcccC
Q psy10821        161 FLPET  165 (200)
Q Consensus       161 ~lpet  165 (200)
                      .++++
T Consensus       363 ~~~~~  367 (368)
T TIGR00903       363 LLPND  367 (368)
T ss_pred             hCCCC
Confidence            44554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00897 2A0118 polyol permease family

Probab=98.36  E-value=1.2e-06  Score=75.14  Aligned_cols=100  Identities=5%  Similarity=-0.110  Sum_probs=63.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hh---cc-ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YY---KT-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      +.++.+.+.||+|||+.+..+......   ..   .. ..+.........+.+++.+........+..|.+|.+.|+++.
T Consensus        64 ~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~  143 (402)
T TIGR00897        64 SAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAV  143 (402)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHH
Confidence            456678999999999876543322111   11   11 223333444455555554445555667788999999999999


Q ss_pred             HHHHHHHHHHH-HHHHHHH--HHhhcCchH
Q psy10821        117 GVGSMCARLSA-ALTPLIG--LMDSFDKRI  143 (200)
Q Consensus       117 ~l~~~~~~i~~-~~~p~i~--~~~~~~~~~  143 (200)
                      |+......++. ..+|.+.  +.+..++..
T Consensus       144 g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~  173 (402)
T TIGR00897       144 GWFWAVYSIGIGVFGSYYSSYAIPAFGEMN  173 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccchHH
Confidence            99998888775 4677765  344455433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.36  E-value=7.2e-07  Score=78.19  Aligned_cols=118  Identities=11%  Similarity=0.007  Sum_probs=71.1

Q ss_pred             eeeEEEEEecccchhHHHHHh---Hhhh--hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSW---VYDK--TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      .+..+.+.||+|||+......   ....  .......+........+..+++..+..........|.+|.+.|+++.|+.
T Consensus       311 ~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~  390 (467)
T PRK09556        311 SLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIK  390 (467)
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            344578889999985443211   1111  11111222222223333333333333334456777999999999999999


Q ss_pred             HHHHHH-HHHHHHHHH--HHh------------hcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        120 SMCARL-SAALTPLIG--LMD------------SFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       120 ~~~~~i-~~~~~p~i~--~~~------------~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ...+.+ ++.++|.+.  ..+            ..++...+.+..+.++++.+..+++
T Consensus       391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            999996 668888888  344            3456777777777777766655543

>KOG2532|consensus

Probab=98.34  E-value=1.6e-06  Score=76.46  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhhhcc-----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTYYKT-----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      +.+.++.++||+|-|++...+.....+....     ..+.+.+++.+++.++..+..++.+..+.+...|++.|++..++
T Consensus        89 ~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ai  168 (466)
T KOG2532|consen   89 GQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAI  168 (466)
T ss_pred             HHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHH
Confidence            3456688999999998776443333222211     22233567888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhh-cCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        119 GSMCARLSAALTPLIG--LMDS-FDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~-~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      .+....++.+++-.+.  +.+. .||+..|++.++++++..++++++
T Consensus       169 l~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  169 LTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999888777654444  4455 899999999999999877766553

>TIGR00889 2A0110 nucleoside transporter

Probab=98.34  E-value=4.8e-06  Score=72.19  Aligned_cols=122  Identities=12%  Similarity=0.099  Sum_probs=78.2

Q ss_pred             eEEEEEecccchhHHHHHhHhhhhh---hcc-ccch---HHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYDKTY---YKT-SRTM---EYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      ..+.+.||+|||+++..+.......   ... ..+.   .......++.++......+....+++|.+|++.|+++.|+.
T Consensus       270 ~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~  349 (418)
T TIGR00889       270 TIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLF  349 (418)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            3456789999997766444332221   111 1111   12233344445555566677788999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHH--HHhh------cCchHHHHHHHHHHHHHHHH-HhhcccCCCC
Q psy10821        120 SMC-ARLSAALTPLIG--LMDS------FDKRIPTTIFATITLMSGIL-STFLPETWNM  168 (200)
Q Consensus       120 ~~~-~~i~~~~~p~i~--~~~~------~~~~~~~~~~~~~~~~~~i~-~~~lpet~~~  168 (200)
                      +.. ..+++.++|.+.  +.+.      .+++..+.+.+++.++..+. .+++||++++
T Consensus       350 ~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       350 TLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            754 568888999888  3444      24566677777766665554 4446888664

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00896 CynX cyanate transporter

Probab=98.33  E-value=1.4e-06  Score=73.29  Aligned_cols=109  Identities=12%  Similarity=-0.055  Sum_probs=69.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+.....   ... ...+...+....++.+++.+........+..|.+| +.|++..++..
T Consensus        51 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  128 (355)
T TIGR00896        51 LAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYS  128 (355)
T ss_pred             HHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHH
Confidence            45667889999999977654332211   111 22334444555566666666666667778889997 57999999988


Q ss_pred             HHHHHHHHHHHHHH-H-Hhhc--CchHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG-L-MDSF--DKRIPTTIFATITLM  154 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~-~~~~--~~~~~~~~~~~~~~~  154 (200)
                      ....++..++|.+. . .+..  +|+..+.+.++..++
T Consensus       129 ~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       129 MALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            87778888888776 2 2332  255566555544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.31  E-value=1.3e-06  Score=74.79  Aligned_cols=119  Identities=6%  Similarity=-0.003  Sum_probs=77.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++.+.+.||+|||+....+......   ......+..+.+...++..+......+....+..|.+|.+ |+++.++....
T Consensus       270 ~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~  348 (393)
T PRK15011        270 LIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNT  348 (393)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHH
Confidence            3456778999999655432221111   1111223333333333344444444555667889999975 99999998888


Q ss_pred             HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        123 ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       123 ~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      ..+++.++|.+.  ..+..++...+.+.++..+++.+..++.||+
T Consensus       349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  393 (393)
T PRK15011        349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV  393 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            889999999888  3555677778877777777777777777764

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.28  E-value=4.9e-09  Score=90.89  Aligned_cols=125  Identities=23%  Similarity=0.187  Sum_probs=90.8

Q ss_pred             CCCeeeEEEEEecccchhHHHHHhHhhhh---hhcccc---chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         42 DDGKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSR---TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        42 ~~G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      ..|.++++.+.||+|||+.+..+......   ....+.   +...+....++.+++.++.......|..|.-|++.|+..
T Consensus        60 ~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~  139 (451)
T PF00083_consen   60 IVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL  139 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45889999999999999766544332222   112233   556667778888888899999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-H----hhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        116 LGVGSMCARLSAALTPLIGL-M----DSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~~-~----~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      .++......+|..++..+.. .    .+..|+..+.+.++.+++..+...++||+.
T Consensus       140 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP  195 (451)
T PF00083_consen  140 SSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP  195 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88777766666666665552 1    224577777777777777666677789873

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.28  E-value=2.1e-06  Score=75.77  Aligned_cols=118  Identities=11%  Similarity=-0.011  Sum_probs=79.7

Q ss_pred             CeeeEEEEEec-ccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH---HhHHH
Q psy10821         44 GKFESCRMFDA-FTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL---RNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr-~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v---R~tg~  116 (200)
                      +.+.++.+.|| +|||+.+..+.......   .....+.........+.+++.+...+....+.+|.+|.+.   |.++.
T Consensus        64 ~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~  143 (475)
T TIGR00924        64 LTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGF  143 (475)
T ss_pred             HHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccccee
Confidence            44567889999 89997766443322221   1122233334444445555566667778899999999764   89999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        117 GVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       117 ~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      ++.+...++++.++|.+.  +.++.+++..+...++..+++.+...+
T Consensus       144 ~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       144 TLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998  355668888888776655555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.27  E-value=4.1e-06  Score=71.27  Aligned_cols=91  Identities=12%  Similarity=-0.088  Sum_probs=64.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+......   ......+.+.+....++.++..+...+.......+..|.+.|++..+...
T Consensus        57 ~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (381)
T PRK03633         57 GTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYM  136 (381)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456678899999999766543322221   11223445555666666666666666666666778899999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG  134 (200)
Q Consensus       121 ~~~~i~~~~~p~i~  134 (200)
                      ....++..++|.+.
T Consensus       137 ~~~~~g~~~g~~~~  150 (381)
T PRK03633        137 MVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88889999999888

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.26  E-value=2.9e-06  Score=74.10  Aligned_cols=72  Identities=18%  Similarity=0.147  Sum_probs=54.5

Q ss_pred             hhhHHHhhccccchhHHhHHHHHHHHHHHHHHHH-HHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc--ccCCC
Q psy10821         96 FAVIYNYSAELFPTVLRNTGLGVGSMCARLSAAL-TPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL--PETWN  167 (200)
Q Consensus        96 ~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~-~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l--pet~~  167 (200)
                      ......+..|.+|++.|+++.|+....+.+++.+ +|.+.  ..+..++...+.+.++.++++++.....  +|+|+
T Consensus       365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  441 (452)
T PRK11273        365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRH  441 (452)
T ss_pred             HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            3344567789999999999999999998887654 68776  4667788888888888888877766554  55443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.26  E-value=8.4e-06  Score=70.58  Aligned_cols=122  Identities=9%  Similarity=0.028  Sum_probs=83.5

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhhhcc------ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTYYKT------SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      +.+..+.+.||+|||+....+..........      ..+........++.+++.+........+..|+.|.+.|++..+
T Consensus        54 ~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~  133 (410)
T TIGR00885        54 MAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLN  133 (410)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHH
Confidence            3455678999999998776544332221111      2234455666677777788888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HH-h--------------------------hcCchHHHHHHHHHHHHHHHHHhh--cccC
Q psy10821        118 VGSMCARLSAALTPLIG-LM-D--------------------------SFDKRIPTTIFATITLMSGILSTF--LPET  165 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~-~~-~--------------------------~~~~~~~~~~~~~~~~~~~i~~~~--lpet  165 (200)
                      +......++..++|.+. .. .                          ..+|+.++...+++.++..+...+  .||.
T Consensus       134 ~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~  211 (410)
T TIGR00885       134 LAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPAL  211 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99888888888888887 22 1                          124677787777766665544433  4653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.25  E-value=1.5e-06  Score=74.27  Aligned_cols=117  Identities=15%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             eeEEEEEecccchhHHHHHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +..+.+.||+|||+.....+...   ........+........++.+++..+..+..+.+.+|.+|++.|+++.|+.+..
T Consensus       273 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  352 (406)
T PRK11551        273 LLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAV  352 (406)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence            44567889999987654332211   111112223333344444455556667778889999999999999999999999


Q ss_pred             HHHHHHHHHHHH-H-HhhcCch-HHHHHHHHHHHHHHHHHhhc
Q psy10821        123 ARLSAALTPLIG-L-MDSFDKR-IPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       123 ~~i~~~~~p~i~-~-~~~~~~~-~~~~~~~~~~~~~~i~~~~l  162 (200)
                      +.+++.++|.+. . .+..+.. ..+.......+++.++.+.+
T Consensus       353 ~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        353 GRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998 3 3433333 33444444444455555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.24  E-value=3.3e-06  Score=71.02  Aligned_cols=118  Identities=8%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +..+.+.||+|||+....+.......   .....+.+......++.+++.+...+....+..|.+|.+. +++.++.+..
T Consensus       253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  331 (375)
T TIGR00899       253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRA-GAATTLYTNT  331 (375)
T ss_pred             HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHH
Confidence            34567889999997655332222111   1112222333333444455555566777788999999865 5999999999


Q ss_pred             HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhccc
Q psy10821        123 ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPE  164 (200)
Q Consensus       123 ~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpe  164 (200)
                      ..++..++|.+.  ..+..++...+.+.++..+++.+...+++|
T Consensus       332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            889999999988  356667778888888777777776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.24  E-value=1.1e-06  Score=73.26  Aligned_cols=112  Identities=10%  Similarity=0.049  Sum_probs=73.9

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhccccc-hHH-HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRT-MEY-ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      .+..+++.||+|||+....+......   ......+ ..+ ......+..+..+...+..+.+.+|.+|++.|++..|+.
T Consensus       257 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  336 (377)
T TIGR00890       257 RPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFL  336 (377)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHH
Confidence            34557789999999765433222111   1111111 111 222233344445555666778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHH
Q psy10821        120 SMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSG  156 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~  156 (200)
                      .....+++.++|.+.  ..+..++...+.+.+++++++.
T Consensus       337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            999999999999988  4566777777777776666543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.23  E-value=2.6e-06  Score=70.22  Aligned_cols=118  Identities=19%  Similarity=0.276  Sum_probs=87.6

Q ss_pred             CeeeEEEEEecccchh-HHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKT-MTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +.+..+.+.||+|||+ ....+......   ......+........++.+++.....+....+..|..|.+.|++..|+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T cd06174         227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLF  306 (352)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHH
Confidence            4556677889999998 65543332221   1122333444555666667777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        120 SMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      .....+++.++|.+.  ..+..++...+.+.+++.+++.+..++
T Consensus       307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            999999999999998  355677888888888888887766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.22  E-value=6.2e-06  Score=71.64  Aligned_cols=75  Identities=17%  Similarity=0.042  Sum_probs=57.6

Q ss_pred             hhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCCCC
Q psy10821         94 GSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETWNM  168 (200)
Q Consensus        94 ~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~  168 (200)
                      +.......+.+|.+|++.|+++.|+.+..+.+++.++|.+.  +.+..++...++..+++++++.+.... .++.+++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        353 GPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             hHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            33444567789999999999999999999999999999888  466678888888888877776655443 4554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.21  E-value=2.9e-05  Score=65.25  Aligned_cols=122  Identities=12%  Similarity=0.021  Sum_probs=78.4

Q ss_pred             eeeEEEEEecc-----cchhHHH-HH---hHhh--hhhhccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         45 KFESCRMFDAF-----TNKTMTC-HS---WVYD--KTYYKTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        45 ~~~~~~l~Dr~-----GRr~~~~-~~---~~~~--~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      .++.+.+.||+     |||+... .+   ....  ...+..+ .+...+....++...+..........+++|.+|.+.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            56678889997     8886532 21   1111  1111111 2222333333344455566667778899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HHhhcC--------chHHHHHHHHHHHHHHHHHhh-cccCC
Q psy10821        113 NTGLGVGSMCARLSAALTPLIG--LMDSFD--------KRIPTTIFATITLMSGILSTF-LPETW  166 (200)
Q Consensus       113 ~tg~~l~~~~~~i~~~~~p~i~--~~~~~~--------~~~~~~~~~~~~~~~~i~~~~-lpet~  166 (200)
                      +.+.++......++..++|.+.  +....+        |+..+++.++..++..+..++ .||.+
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            9999998887778888888777  234455        888888887777766655554 46653

>PRK10133 L-fucose transporter; Provisional

Probab=98.20  E-value=5.3e-06  Score=72.41  Aligned_cols=90  Identities=9%  Similarity=0.012  Sum_probs=65.0

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhhh------ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTYY------KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      .+..+.+.||+|||+.+..+........      ....+...+....++.+++.+........++.|..|.+.|....++
T Consensus        78 ~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~  157 (438)
T PRK10133         78 PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL  157 (438)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHH
Confidence            3556788999999987764433222111      1244556667777788888888888888888898888888878888


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10821        119 GSMCARLSAALTPLIG  134 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~  134 (200)
                      ......++..++|.+.
T Consensus       158 ~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        158 AQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8887778888888775

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.20  E-value=2.9e-06  Score=72.99  Aligned_cols=97  Identities=13%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhhh----ccccchHHHHHHHHHH-HHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTYY----KTSRTMEYILYIVFFG-KFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +..+.+.||+|||+....+........    ....+........+++ .+...+..+..+.++.|.+|++.|+++.|+.+
T Consensus       284 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  363 (426)
T PRK12307        284 IVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIY  363 (426)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHH
Confidence            345677899999976654332221111    1111111222222222 12223445667788899999999999999999


Q ss_pred             HHHHHHHHHHHHHH-H-HhhcCch
Q psy10821        121 MCARLSAALTPLIG-L-MDSFDKR  142 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~-~~~~~~~  142 (200)
                      .++.+++.++|.+. . .+..+..
T Consensus       364 ~~~~~~~~~gp~~~g~l~~~~g~~  387 (426)
T PRK12307        364 NLAATSGTFNSMAATWLGITMGLG  387 (426)
T ss_pred             HHHhHHHHHHHHHHHHHHHcccHH
Confidence            99999999999998 3 4445533

>PTZ00207 hypothetical protein; Provisional

Probab=98.20  E-value=5.9e-06  Score=74.72  Aligned_cols=112  Identities=11%  Similarity=-0.032  Sum_probs=71.4

Q ss_pred             eEEEEEecccchhHHHHHhHhhhhhh---ccc------cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYDKTYY---KTS------RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      .++.+.||+|||.++..+.+......   ...      .+.+.+.+..++.+++.+..+........+.|| +.|++..|
T Consensus        80 p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~G  158 (591)
T PTZ00207         80 PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVA  158 (591)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHH
Confidence            46888999999977654332221111   111      233334445556666666666777788899998 78999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Q psy10821        118 VGSMCARLSAAL-TPLIGLMDSFDKRIPTTIFATITLMSGILS  159 (200)
Q Consensus       118 l~~~~~~i~~~~-~p~i~~~~~~~~~~~~~~~~~~~~~~~i~~  159 (200)
                      +......+++.+ +++.......++...+++.+++.++..+..
T Consensus       159 i~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        159 IMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999888875 444443333456666666666666654443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.18  E-value=1.1e-06  Score=77.15  Aligned_cols=117  Identities=14%  Similarity=0.024  Sum_probs=79.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhh---hh--h---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYD---KT--Y---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~---~~--~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      +.+..+.+.||+|||+++..+....   ..  .   .....+...+....++.+++.+..++....+++|.||.+.|+++
T Consensus        80 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a  159 (467)
T PRK09556         80 GKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRF  159 (467)
T ss_pred             HHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeee
Confidence            4567899999999997654322111   11  1   11134455666777777888888888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-H-Hhh---cCchHHHHHHHHHHHHHHHHHh
Q psy10821        116 LGVGSMCARLSAALTPLIG-L-MDS---FDKRIPTTIFATITLMSGILST  160 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~-~-~~~---~~~~~~~~~~~~~~~~~~i~~~  160 (200)
                      .|+....+.+++.+++.+. . ...   .+|...+.+.+++.++..+..+
T Consensus       160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence            9998887778888877776 2 222   1456666666666655444433

>KOG3764|consensus

Probab=98.17  E-value=2.9e-06  Score=72.50  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=100.1

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH-HhHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL-RNTGLGVGS  120 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v-R~tg~~l~~  120 (200)
                      ++..+.++||+|+|..+.++..+...   .+....+.+.+.+.+.+.++..+.....-.+..++.||.+. |++++|...
T Consensus       123 np~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGial  202 (464)
T KOG3764|consen  123 NPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIAL  202 (464)
T ss_pred             cccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHH
Confidence            35678899999999877766654433   33345667788888999999999999999999999999987 699999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL-PETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l-pet~  166 (200)
                      ....+|-.++|-..  +.+..|...||.++++++++-..+.++. +.++
T Consensus       203 gfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  203 GFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             HHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            99999999998887  5788899999999999999988877764 4433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.16  E-value=2e-06  Score=74.14  Aligned_cols=119  Identities=17%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             eeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +..+.+.||+|||+....+.....   .......+..+.+....+..+...........+.+|.+|.+.|++..+..++.
T Consensus       280 ~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  359 (420)
T PRK09528        280 FFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQF  359 (420)
T ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHH
Confidence            345678899999976543322211   11112333444444444444444455556678899999999999987775544


Q ss_pred             -HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-ccc
Q psy10821        123 -ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPE  164 (200)
Q Consensus       123 -~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpe  164 (200)
                       ..+++.++|.+.  +.+..++...+...+++.++..+..++ +++
T Consensus       360 ~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        360 AKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence             448888888888  466678888888887777766555444 344

>PRK12382 putative transporter; Provisional

Probab=98.16  E-value=6.9e-06  Score=69.97  Aligned_cols=116  Identities=15%  Similarity=0.028  Sum_probs=78.7

Q ss_pred             eeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +..+.+.||+|||+....+.....   .......+.........+.++..+...+.......|.+|.+.|+++.|+.+..
T Consensus       267 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (392)
T PRK12382        267 VLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAF  346 (392)
T ss_pred             HHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            445678899999865443222111   11111233333333444445555556667778889999999999999999999


Q ss_pred             HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        123 ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       123 ~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      ..+++.++|.+.  ..+..++...+.+.+++.+++.+..++
T Consensus       347 ~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        347 QDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            889999999888  466678888888888777777665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.15  E-value=3.7e-06  Score=73.64  Aligned_cols=117  Identities=14%  Similarity=0.105  Sum_probs=76.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHH-HHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILY-IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +.++.+.+.||+|||+.+..+.....   .......+.+.... ..++.++..+........+..|.|| +.|+++.++.
T Consensus        70 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~  148 (455)
T TIGR00892        70 GGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLA  148 (455)
T ss_pred             hhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHH
Confidence            34566889999999976654332211   11111222222222 2244444444444556677889996 7899999999


Q ss_pred             HHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        120 SMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      .....+++.++|.+.  +.+..+|+..++..+++.++..+..++
T Consensus       149 ~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       149 MAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             HhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            999888888888777  466778999999988877766554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.14  E-value=9.6e-06  Score=71.36  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=86.1

Q ss_pred             eeEEEEEecccchhHHHHH---hHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHS---WVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +.++++.||+|-|+++..+   |...........+...+.+..++.+++.+..+ ....++...||.+.|+++.|+....
T Consensus        80 Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg  158 (511)
T TIGR00806        80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAA  158 (511)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            4567889999999776533   33333333334456667788888888888888 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHhhcCchHHH---HHHHHHHHHHHHHHhhcc
Q psy10821        123 ARLSAALTPLIG-LMDSFDKRIPT---TIFATITLMSGILSTFLP  163 (200)
Q Consensus       123 ~~i~~~~~p~i~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~lp  163 (200)
                      ..+|..+++.+. .+...+|....   ++-.....++.++.+++|
T Consensus       159 ~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       159 VLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            989999888888 45556666532   233344455667778887

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.08  E-value=2.7e-06  Score=74.64  Aligned_cols=107  Identities=18%  Similarity=0.268  Sum_probs=67.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh----hccccchHHHH-HHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY----YKTSRTMEYIL-YIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      |....+++.||+|||+....+.......    ........+.. ...++..+...+..+..+.+..|.+|.+.|+++.++
T Consensus       327 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  406 (496)
T PRK03893        327 GCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF  406 (496)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence            3455678889999997655333221111    11112222222 222222333344556677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHH
Q psy10821        119 GSMCARLSAALTPLIG--LMDSFDKRIPTTIFAT  150 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~  150 (200)
                      .+..+.+++.++|.+.  ..+..++...+...+.
T Consensus       407 ~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        407 TYNVGALGGALAPILGALIAQRLDLGTALASLSF  440 (496)
T ss_pred             hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            9999999999999988  3556666655544443

>KOG2615|consensus

Probab=98.07  E-value=3.4e-06  Score=71.79  Aligned_cols=117  Identities=20%  Similarity=0.293  Sum_probs=74.1

Q ss_pred             EEEEecccchhHHHHHhHhhhhhhc---cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHH
Q psy10821         49 CRMFDAFTNKTMTCHSWVYDKTYYK---TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARL  125 (200)
Q Consensus        49 ~~l~Dr~GRr~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i  125 (200)
                      +.+.||+|||+++..+.+....++.   .+.+...++...++++++ .+..++.-++++|+++.+.|+.+++.......+
T Consensus        89 G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~-kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~l  167 (451)
T KOG2615|consen   89 GCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF-KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGL  167 (451)
T ss_pred             hhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCchHHHHHHHHhhcChhhccceeeeeehhhhc
Confidence            6788999999877655443333222   233333344445555544 455678889999999999999999998888888


Q ss_pred             HHHHHHHHH-HHhh---cCchHHHHH----HHHHHHH-HHHHHhhcccCC
Q psy10821        126 SAALTPLIG-LMDS---FDKRIPTTI----FATITLM-SGILSTFLPETW  166 (200)
Q Consensus       126 ~~~~~p~i~-~~~~---~~~~~~~~~----~~~~~~~-~~i~~~~lpet~  166 (200)
                      |-+++|.+. ++..   ....+++.+    ..+.+.. ..+..+++|||-
T Consensus       168 GfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  168 GFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             chhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            888888887 3222   333334333    2222222 233456689983

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.06  E-value=4.4e-05  Score=65.32  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             eeEEEEEecccchhHHH-HHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH--HHHH
Q psy10821         46 FESCRMFDAFTNKTMTC-HSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG--LGVG  119 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg--~~l~  119 (200)
                      +.+.. .||+|||+... .+....   ........+.+.+.....+.........+....+..|..|.+-|..+  .++.
T Consensus        70 ~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (393)
T PRK15011         70 FLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFL  148 (393)
T ss_pred             HHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            33455 89999986532 222211   11111223333333333333333344455566777777766655432  3566


Q ss_pred             HHHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHHHH-hhcccCC
Q psy10821        120 SMCARLSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGILS-TFLPETW  166 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~  166 (200)
                      .....++..++|.+. . .+..+|+..++..++..++..+.. .++||.+
T Consensus       149 ~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        149 RAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            666678888888888 3 457799988888887777665554 4467653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.06  E-value=2.1e-05  Score=71.15  Aligned_cols=112  Identities=20%  Similarity=0.142  Sum_probs=73.9

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhhh---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTYY---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++.+.+.|.||||...+.+-.+.....   ....+....+....+.++. .+........++|+.|.|.|..+.++....
T Consensus        96 ~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~  174 (599)
T PF06609_consen   96 PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIP  174 (599)
T ss_pred             HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHH
Confidence            455788999999987775443332222   1234445555555555555 344445667789999999999888777654


Q ss_pred             HHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHHH
Q psy10821        123 ARLSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGIL  158 (200)
Q Consensus       123 ~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i~  158 (200)
                      ..+....+|.+. . ..+.+|++.+++..+...++++.
T Consensus       175 ~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  175 FIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            445555677777 2 34567999888888777776554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.04  E-value=1.4e-05  Score=68.54  Aligned_cols=125  Identities=10%  Similarity=0.056  Sum_probs=75.4

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhh---h-ccccchHHHHHHHHHHHHHHhhhhhhHHHhhcccc-chhHHhHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTY---Y-KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELF-PTVLRNTGLGVG  119 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElf-Pt~vR~tg~~l~  119 (200)
                      .+..+.+.||+|||+....+.......   . ....+....  ..++.++.....++.......+.+ |++.|++..++.
T Consensus       257 ~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~  334 (393)
T PRK09705        257 ALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFM  334 (393)
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            344567889999986554332221111   1 112222222  122334444455555555666666 578999999999


Q ss_pred             HHHHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHH-hhcccCCCCCch
Q psy10821        120 SMCARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILS-TFLPETWNMVCD  171 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~-~~lpet~~~~l~  171 (200)
                      +.++.+++.++|.+.  +.+..+ ....+++.+..+++..++. .+.|||++|...
T Consensus       335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK09705        335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWV  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence            999999999999998  355555 4455666565555555543 446998877543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.04  E-value=2.9e-05  Score=66.75  Aligned_cols=113  Identities=19%  Similarity=0.176  Sum_probs=72.4

Q ss_pred             eEEEEEecccchhHHHHHh---Hhhhhhhcc---ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSW---VYDKTYYKT---SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      .-+.+.||+|-|++...+.   .++......   ..+.+.++.+.++.+ ..++.+++...+.++.||.|.++++.|+.-
T Consensus        68 ~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G-~~GasFav~m~~~s~~fP~~~qG~AlGI~g  146 (417)
T COG2223          68 PYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG-LAGASFAVGMPNASFFFPKEKQGLALGIAG  146 (417)
T ss_pred             HHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHh-cccceehcccccccccCChhhhhHHHHHhc
Confidence            3478999999986654332   333332222   222223333333333 335567777889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH--HhhcC---chHHHHHHHHHHHHHHHHHhh
Q psy10821        121 MCARLSAALTPLIGL--MDSFD---KRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       121 ~~~~i~~~~~p~i~~--~~~~~---~~~~~~~~~~~~~~~~i~~~~  161 (200)
                       .|++|..+..++.+  ....+   |.....++....++..+..++
T Consensus       147 -~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         147 -AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             -cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             88888887777772  44445   666666666666665554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.99  E-value=0.00011  Score=64.78  Aligned_cols=86  Identities=16%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             EEEEEecccchhHHHHHhH---hhhhhhcc-----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHSWV---YDKTYYKT-----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      .+.+.||+|.|++...+..   ........     .++...+....++.++. +..++.....+++.||.+.|+++.|+.
T Consensus        90 ~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~  168 (462)
T PRK15034         90 YSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGIN  168 (462)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHH
Confidence            4788899999865543322   22221111     13455566666666665 667888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10821        120 SMCARLSAALTPLIG  134 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~  134 (200)
                      ...+.++..+.+++.
T Consensus       169 ~g~G~~G~~l~~~l~  183 (462)
T PRK15034        169 GGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHhhHHHHHHHHH
Confidence            866666665554444

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.97  E-value=1e-05  Score=67.53  Aligned_cols=69  Identities=12%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             HHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-H-HhhcC-chHHHHHHHHHHHHHHHHH
Q psy10821         91 CIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-L-MDSFD-KRIPTTIFATITLMSGILS  159 (200)
Q Consensus        91 ~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~~-~~~~~~~~~~~~~~~~i~~  159 (200)
                      +..+..+..+.+.+|.+|++.|+++.++...+..+++.++|.+. . .+..+ +...+.+.++..+++.+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       324 FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            33346788899999999999999999999999999999999998 3 45555 6666666666666655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.96  E-value=3.6e-05  Score=68.44  Aligned_cols=111  Identities=7%  Similarity=-0.103  Sum_probs=71.0

Q ss_pred             eeEEEEEec-ccchhHHHHHhHhhhh---hhccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH--HhHHHHH
Q psy10821         46 FESCRMFDA-FTNKTMTCHSWVYDKT---YYKTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL--RNTGLGV  118 (200)
Q Consensus        46 ~~~~~l~Dr-~GRr~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v--R~tg~~l  118 (200)
                      ++++++.|| +|||+....+......   ..... ...........+.+++.+...+....+.+|.||.+.  |..+.++
T Consensus        75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~  154 (500)
T PRK09584         75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTM  154 (500)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchH
Confidence            356899999 5999766543322221   11112 222233333444455555566677789999998643  4567787


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHH
Q psy10821        119 GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSG  156 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~  156 (200)
                      .+...++++.++|.+.  +.+..+|+..|.+.++...++.
T Consensus       155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            7888889999999998  3566788888887665444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.96  E-value=0.00013  Score=62.67  Aligned_cols=123  Identities=15%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             CeeeEEEEEecc-----cchh-HHHHHhH---hhhh--hhccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH
Q psy10821         44 GKFESCRMFDAF-----TNKT-MTCHSWV---YDKT--YYKTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL  111 (200)
Q Consensus        44 G~~~~~~l~Dr~-----GRr~-~~~~~~~---~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v  111 (200)
                      ..++.+.+.||+     |||+ .+..+..   ....  ..... .+.+.+....++..++.+........+.+|.+|.+.
T Consensus        48 ~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  127 (402)
T PRK11902         48 FKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE  127 (402)
T ss_pred             HHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            345667889999     8874 3322111   1111  11112 222333333344456666677778899999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH-H-Hhh-cCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        112 RNTGLGVGSMCARLSAALTPLIG-L-MDS-FDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       112 R~tg~~l~~~~~~i~~~~~p~i~-~-~~~-~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      |+++.++......++..+++.+. . .+. .+|+..+++.++..++..+..++.||++
T Consensus       128 r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        128 RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999987778888877776 3 343 4788888888887776655555667653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.92  E-value=8.7e-05  Score=66.44  Aligned_cols=117  Identities=15%  Similarity=0.067  Sum_probs=79.7

Q ss_pred             eeEEEEEecccchhHHHHHhHhh--------hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYD--------KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      +.++.+.||+.||+++...-...        ........+.+.+....++.+++.+...+...++++|+.|.+.-..+.+
T Consensus        63 l~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~a  142 (524)
T PF05977_consen   63 LFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANA  142 (524)
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHH
Confidence            45788999999997765322111        1111112334445566666777778888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        118 VGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      +.....++...++|.+.  +....+....|.+-++.-+++.++....
T Consensus       143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            98888888888888888  3555666666666555444444443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03545 putative arabinose transporter; Provisional

Probab=97.89  E-value=4e-05  Score=65.38  Aligned_cols=117  Identities=9%  Similarity=-0.014  Sum_probs=74.5

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh--hh-ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT--YY-KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      .+..+.+.||+|||.+..........  .. ....+........++.++..............|..| +.|+++.|+...
T Consensus       258 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  336 (390)
T PRK03545        258 SVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSG  336 (390)
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence            34457788999998654332221111  11 112233333333444444444444455667778877 688999999988


Q ss_pred             HHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        122 CARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       122 ~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ...++..++|.+.  ..+..+....+...+.+.+++.+.....
T Consensus       337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            8888998999998  4677888888888888777776665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.88  E-value=8.5e-06  Score=68.38  Aligned_cols=104  Identities=16%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             eEEEEEecccchhHHHHH-hHh--hh---hhhc-cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHS-WVY--DK---TYYK-TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~-~~~--~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +.+.+.||+|||+..... ...  ..   .... ...+........++..++....++....+.+|.+|.+.|+++.++.
T Consensus       274 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  353 (394)
T TIGR00883       274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLA  353 (394)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeeh
Confidence            446788999999754421 111  11   1111 1222233334444555666677788899999999999999999998


Q ss_pred             HHHHH-HHHHHHHHHH--HHhhcC-chHHHHHHHH
Q psy10821        120 SMCAR-LSAALTPLIG--LMDSFD-KRIPTTIFAT  150 (200)
Q Consensus       120 ~~~~~-i~~~~~p~i~--~~~~~~-~~~~~~~~~~  150 (200)
                      ++++. +++.++|.+.  +.+..+ +....++...
T Consensus       354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            87766 6777999888  355555 4444444333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.87  E-value=0.00023  Score=61.31  Aligned_cols=124  Identities=13%  Similarity=0.024  Sum_probs=68.8

Q ss_pred             CCeeeEEEEEec----ccchh-HHHHHhH---hhhhhhc-ccc-c----hHHHHHHHHHHHHHHhhhhhhHHHhhcccc-
Q psy10821         43 DGKFESCRMFDA----FTNKT-MTCHSWV---YDKTYYK-TSR-T----MEYILYIVFFGKFCIAGSFAVIYNYSAELF-  107 (200)
Q Consensus        43 ~G~~~~~~l~Dr----~GRr~-~~~~~~~---~~~~~~~-~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~~sElf-  107 (200)
                      ...+..+.+.||    +|||+ .+..+..   ....... .+. .    ..+.....++...+.+....+..++.+|+. 
T Consensus        50 i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~  129 (437)
T TIGR00792        50 ITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL  129 (437)
T ss_pred             hccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC
Confidence            356788999998    67753 3322211   1111111 111 1    122222333333344444455677888987 


Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHH--HH-------hhcCchHHHHHHHHHHHHHHHHH-hhcccCC
Q psy10821        108 PTVLRNTGLGVGSMCARLSAALTPLIG--LM-------DSFDKRIPTTIFATITLMSGILS-TFLPETW  166 (200)
Q Consensus       108 Pt~vR~tg~~l~~~~~~i~~~~~p~i~--~~-------~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~  166 (200)
                      +.+.|.+..++....+.+++.+.+.+.  +.       +..+|...+.+.++++++..+.. ...||.+
T Consensus       130 ~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       130 DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            578999999988777767666555443  11       13456667777777776665543 4457654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03699 putative transporter; Provisional

Probab=97.84  E-value=1.7e-05  Score=67.82  Aligned_cols=119  Identities=8%  Similarity=0.065  Sum_probs=77.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++.+.+.||+|||+.+........   .......+..+.....+..+++..+.++....+..|..|.+ |++..+.....
T Consensus       259 ~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~  337 (394)
T PRK03699        259 WIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTC  337 (394)
T ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHh
Confidence            344677899999976553222111   11112333344444445555666667777777888887754 67778888888


Q ss_pred             HHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        123 ARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       123 ~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      +.+++.++|.+.  +.+..+....++..+++.+++.+....++++
T Consensus       338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (394)
T PRK03699        338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFV  382 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            889999999998  4566777777777777777766665555544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.82  E-value=3.1e-05  Score=65.98  Aligned_cols=114  Identities=9%  Similarity=0.062  Sum_probs=78.7

Q ss_pred             EEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCAR  124 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~  124 (200)
                      .+.+.||+|||+....+.......   .....+.+......++.+++.+...+....+..|..|.+.|++..++......
T Consensus       278 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  357 (408)
T PRK09874        278 LGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD  357 (408)
T ss_pred             HHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH
Confidence            356889999987655433222111   11122333334444455566666677777788889999999999999998888


Q ss_pred             HHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        125 LSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       125 i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      ++..++|.+.  ..+..++...+.+.+++.+++.+..++
T Consensus       358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999988  356677888888888888877766554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.81  E-value=1.3e-05  Score=70.56  Aligned_cols=117  Identities=7%  Similarity=0.094  Sum_probs=70.9

Q ss_pred             eeeEEEEEecccchh-------HHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhH
Q psy10821         45 KFESCRMFDAFTNKT-------MTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNT  114 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~t  114 (200)
                      .++.+++.||+|||.       ..........   .......+....+...++..++.....+..+.+.+|+.| +.|++
T Consensus       305 ~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~  383 (476)
T PLN00028        305 RPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGV  383 (476)
T ss_pred             HhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchh
Confidence            345678999998751       1111111111   111112222223333334444445556667777888765 79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        115 GLGVGSMCARLSAALTPLIGLMD-SFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       115 g~~l~~~~~~i~~~~~p~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ..|+....+.+++.++|++.... ..++...+++.+++.+++.++.++.
T Consensus       384 ~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        384 ISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            99999888888999999876432 2346667777777777777776665

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.79  E-value=1.9e-05  Score=66.78  Aligned_cols=95  Identities=22%  Similarity=0.326  Sum_probs=63.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh----hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT----YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      +..+.+.||+|||+....+......    ......+........++..++..+.++..+.+.+|.+|++.|+++.|+.+.
T Consensus       292 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  371 (405)
T TIGR00891       292 CVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQ  371 (405)
T ss_pred             HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHH
Confidence            3456788999999765533322211    111122222233333444455566677788899999999999999999999


Q ss_pred             HHHHHHHHHHHHH-H-HhhcC
Q psy10821        122 CARLSAALTPLIG-L-MDSFD  140 (200)
Q Consensus       122 ~~~i~~~~~p~i~-~-~~~~~  140 (200)
                      ++.+++.++|.+. . .+..+
T Consensus       372 ~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       372 LGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998 3 44444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.74  E-value=0.00017  Score=61.38  Aligned_cols=117  Identities=9%  Similarity=0.002  Sum_probs=71.8

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhhhc-cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTYYK-TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCA  123 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~  123 (200)
                      ....+.+.||+|||+.+..+......... .... ........+.++......+....+..|..|.+.+....+......
T Consensus       252 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (381)
T PRK03633        252 QWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSY  330 (381)
T ss_pred             HhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            34456788999999765433222111110 0111 112222223333334556777788889999988777777666556


Q ss_pred             HHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        124 RLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       124 ~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      .+++.++|.+.  ..+..++...+.+.+.+.++..+..+..
T Consensus       331 ~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        331 TVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            68899999888  4677788888888777777666555544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.72  E-value=5.1e-05  Score=65.96  Aligned_cols=67  Identities=16%  Similarity=0.074  Sum_probs=50.8

Q ss_pred             HHhhccccchhHHhHHHHHHHHHHHHHH-HHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCC
Q psy10821        100 YNYSAELFPTVLRNTGLGVGSMCARLSA-ALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETW  166 (200)
Q Consensus       100 ~~~~sElfPt~vR~tg~~l~~~~~~i~~-~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~  166 (200)
                      .....|.+|.+.|+++.|+.+..+.+++ .++|.+.  ..+..++...+.+..+..+++.+..++ .||.|
T Consensus       367 ~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       367 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567899999999999999999888765 5788887  356667777777777766666665554 47765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.71  E-value=8.8e-05  Score=63.20  Aligned_cols=120  Identities=5%  Similarity=0.032  Sum_probs=70.1

Q ss_pred             CeeeEEEEEecccch----hHHH-HHhHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAFTNK----TMTC-HSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      +.+..+.+.||+|||    +..+ ..............+.+.+.....+.+++.+...+....+..+.  .+.|.++.+.
T Consensus        55 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~  132 (382)
T PRK11128         55 GSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGK  132 (382)
T ss_pred             hhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcch
Confidence            445556789999984    2222 21111111111223333344444444555555555555555554  4558888888


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        119 GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      ....+.++..++|.+.  +.+..+|+..++..++..++..+...+.||.
T Consensus       133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            8888889999999998  3566788888877665544444444445654

>KOG2533|consensus

Probab=97.70  E-value=5.4e-05  Score=67.23  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             CeeeEEEEEecccchhHHH-H--HhHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTC-H--SWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.+.++.+.||+.-...+. .  .|...........+.+..++..++.+++.++.++....+++-.|..+.|++-+++-+
T Consensus        97 ~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~  176 (495)
T KOG2533|consen   97 GQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWY  176 (495)
T ss_pred             HHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHH
Confidence            5567788999998544333 2  222221111113456678889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--------hhcCchHHHHHHHHHHHHHHHHHhh-cccCC
Q psy10821        121 MCARLSAALTPLIGLM--------DSFDKRIPTTIFATITLMSGILSTF-LPETW  166 (200)
Q Consensus       121 ~~~~i~~~~~p~i~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~  166 (200)
                      +.+.++++++.+++..        ...+|.+.|++-+++++...+..++ +|+..
T Consensus       177 a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  177 ASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             HhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            9999999998888832        3467999999999988887766554 66543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.68  E-value=5.8e-05  Score=69.07  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-H-Hhhc-------------------
Q psy10821         81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-L-MDSF-------------------  139 (200)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~-------------------  139 (200)
                      +++..++.+++.+..++....++.|.+|.+.|++..++.+....++..+++.+. . ...+                   
T Consensus       175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr  254 (633)
T TIGR00805       175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR  254 (633)
T ss_pred             hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence            345667777777788888899999999999999999999999888888888877 2 2111                   


Q ss_pred             ---CchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        140 ---DKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       140 ---~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                         .|+..|++.+++.++.++..+++|++
T Consensus       255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       255 WIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence               15566777777777766655666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.66  E-value=8.2e-05  Score=65.95  Aligned_cols=122  Identities=10%  Similarity=0.052  Sum_probs=77.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhH---hhhhhh---ccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWV---YDKTYY---KTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~---~~~~~~---~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      |.++++.+.||+|||+.......   .....+   ... .+........++..+..+...+..+.+..|+.|.+.+++..
T Consensus       275 G~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~  354 (491)
T PRK11010        275 GALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQF  354 (491)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence            44556788899998765442211   111110   111 12222222333333344445566788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        117 GVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       117 ~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      ++.+....+++.+.+.+.  ..+..++...+.+.+++++.+.+....++++
T Consensus       355 gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        355 ALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998888877666655  4666787777888888888877776666543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.65  E-value=7.1e-05  Score=64.65  Aligned_cols=55  Identities=15%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             hhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-H-HhhcC-chHHHHHHHH
Q psy10821         96 FAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-L-MDSFD-KRIPTTIFAT  150 (200)
Q Consensus        96 ~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~~-~~~~~~~~~~  150 (200)
                      .+..+....|.+|++.|+++.|+.+..+++++.++|.+. . .+..+ +...+.+.++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       351 MAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             hhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            344556778999999999999999999999999999988 3 44443 4555544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00897 2A0118 polyol permease family

Probab=97.58  E-value=0.00028  Score=60.55  Aligned_cols=116  Identities=19%  Similarity=0.160  Sum_probs=71.9

Q ss_pred             eeeEEEEEecccchhHHH-HH---hHhhhhhh---c--cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         45 KFESCRMFDAFTNKTMTC-HS---WVYDKTYY---K--TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~-~~---~~~~~~~~---~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      .+..+.+.||+|||+... ..   ........   .  ...+........++.+++.....+ .....+|..|. .|+++
T Consensus       274 ~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~~g~~  351 (402)
T TIGR00897       274 NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-HKGAA  351 (402)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-hhHHH
Confidence            345578899999885432 11   11111111   1  112222333333344444444333 34566787664 79999


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        116 LGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      .|+.+....+++.++|.+.  ..+..++...+.+.+++.+++.+...++
T Consensus       352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988  4667787888888887777776665553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.57  E-value=0.00017  Score=63.83  Aligned_cols=126  Identities=17%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             CCeeeEEEEEecccch--hHHHHH---hHh-hhhhhc-------cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccch
Q psy10821         43 DGKFESCRMFDAFTNK--TMTCHS---WVY-DKTYYK-------TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPT  109 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr--~~~~~~---~~~-~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt  109 (200)
                      +|.++.+++-||+|.|  +++...   +.. +.....       ...+.+......++.+++.++.++..=.+.+|+-|.
T Consensus       332 ~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~  411 (477)
T PF11700_consen  332 IGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP  411 (477)
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence            4677778899999999  544422   211 111111       022334456667778888899999999999999999


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHH-H-HhhcC-chHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy10821        110 VLRNTGLGVGSMCARLSAALTPLIG-L-MDSFD-KRIPTTIFATITLMSGILSTFLPETWNM  168 (200)
Q Consensus       110 ~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~~-~~~~~~~~~~~~~~~~i~~~~lpet~~~  168 (200)
                      ...+.-.|+-...++..++++|++. . .+..+ .+..+....++.+++.++.+..++.|++
T Consensus       412 g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~  473 (477)
T PF11700_consen  412 GREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR  473 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence            9999999999999999999999999 3 34443 6677888888888888888777776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00895 2A0115 benzoate transport

Probab=97.56  E-value=9.7e-05  Score=62.13  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             eeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ++.+.+.||+|||...........   .......+........++.+++.+...+....+.+|.+|++.|+++.|+...+
T Consensus       303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  382 (398)
T TIGR00895       303 IIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGI  382 (398)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            445678899999844332211111   11111223334445555666777778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy10821        123 ARLSAALTPLIG  134 (200)
Q Consensus       123 ~~i~~~~~p~i~  134 (200)
                      +.+++.++|.+.
T Consensus       383 ~~~g~~~g~~~~  394 (398)
T TIGR00895       383 GRLGAIIGPILA  394 (398)
T ss_pred             HHHHHHHHHHhH
Confidence            999999998775

>TIGR01272 gluP glucose/galactose transporter

Probab=97.53  E-value=0.00084  Score=56.00  Aligned_cols=91  Identities=21%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhh----------------
Q psy10821         77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDS----------------  138 (200)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~----------------  138 (200)
                      +..+.+...++.+.+.+........|++++.|.+.|++-+++......+|..++|++.  +...                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            3556677777778888889999999999999999999999999999999999999999  2311                


Q ss_pred             cCchHHHHHHHHHHHHHHHHHhh--cccCCC
Q psy10821        139 FDKRIPTTIFATITLMSGILSTF--LPETWN  167 (200)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~i~~~~--lpet~~  167 (200)
                      .++..+++..+.+..+..+...+  +||.+.
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~  119 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQE  119 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence            24566777666655554444433  466543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10504 putative transporter; Provisional

Probab=97.50  E-value=0.00088  Score=58.49  Aligned_cols=88  Identities=14%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             eEEEEEecccchhHHHHHhHhhh---h--hhccccchHH-HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYDK---T--YYKTSRTMEY-ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+.+.||+|||+.+..+.....   .  .........+ .....++.++..+..++....+..+..|.+.|+++.++..
T Consensus       316 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  395 (471)
T PRK10504        316 IVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS  395 (471)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence            35678899999876553322111   1  1111112222 2223333445566667778899999999999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG  134 (200)
Q Consensus       121 ~~~~i~~~~~p~i~  134 (200)
                      ....++..++|.+.
T Consensus       396 ~~~~~g~~ig~~i~  409 (471)
T PRK10504        396 MIMQLSMSIGVTIA  409 (471)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88878888887776

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.48  E-value=0.0014  Score=56.69  Aligned_cols=120  Identities=11%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             eeeEEEEEe----cccchhHHH-HHhH---hhh--hhhc-c---cc--chHHHHHHHHHHHHHHhhhhhhHHHhhccccc
Q psy10821         45 KFESCRMFD----AFTNKTMTC-HSWV---YDK--TYYK-T---SR--TMEYILYIVFFGKFCIAGSFAVIYNYSAELFP  108 (200)
Q Consensus        45 ~~~~~~l~D----r~GRr~~~~-~~~~---~~~--~~~~-~---~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfP  108 (200)
                      .++.+.++|    |+|||+-.. .+..   +..  .... .   +.  ...|.....++..++......+..++.+|+.+
T Consensus        54 dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~  133 (428)
T PF13347_consen   54 DPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP  133 (428)
T ss_pred             CCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccc
Confidence            467899999    799884221 1111   111  1111 1   11  11233334444456666677778899999998


Q ss_pred             -hhHHhHHHHHHHHHHHHHHHHHHHHH--HH---hhc----CchHHHHHHHHHHHHHHHHHhh-ccc
Q psy10821        109 -TVLRNTGLGVGSMCARLSAALTPLIG--LM---DSF----DKRIPTTIFATITLMSGILSTF-LPE  164 (200)
Q Consensus       109 -t~vR~tg~~l~~~~~~i~~~~~p~i~--~~---~~~----~~~~~~~~~~~~~~~~~i~~~~-lpe  164 (200)
                       .+.|.+..+.....+.+++.+...+.  ..   .+.    ++.....+.+++.++..+...+ .+|
T Consensus       134 ~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  134 DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence             56899999988888777765544444  11   111    3445555566666655544444 577

>KOG0253|consensus

Probab=97.44  E-value=0.00053  Score=58.71  Aligned_cols=124  Identities=12%  Similarity=0.082  Sum_probs=92.6

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |...-+...|++|||+..........   .....+.+..++.....+.+++.++ .+...++-.|.-|...|.+-+-.. 
T Consensus       129 ga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-  206 (528)
T KOG0253|consen  129 GAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-  206 (528)
T ss_pred             hhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-
Confidence            55566889999999976654333222   2223466777788888888888777 888889999999999999988877 


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETWNMV  169 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~~~~  169 (200)
                      ....++......+.  .+.+.+|++..+.......+.+...+.+||..+-.
T Consensus       207 ~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  207 FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY  257 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence            66668888888887  47788888887777766666677777788876543

>KOG2816|consensus

Probab=97.43  E-value=0.00028  Score=62.22  Aligned_cols=121  Identities=16%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             eEEEEEecccchhHHHHHhHhh---hhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYD---KTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCA  123 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~  123 (200)
                      .-+.+.||+|||..+.......   ........  +|... ..-........++....|+++.-..+.|....++....-
T Consensus        81 ~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~  157 (463)
T KOG2816|consen   81 LIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTF  157 (463)
T ss_pred             hhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHH
Confidence            3478899999997665333222   22222222  33322 111223345667788999999999999999999999988


Q ss_pred             HHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCCCCCc
Q psy10821        124 RLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS-TFLPETWNMVC  170 (200)
Q Consensus       124 ~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~~~l  170 (200)
                      ..+..++|...  .....+...++.+..+..++..+.. +++||+...+.
T Consensus       158 ~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~  207 (463)
T KOG2816|consen  158 GAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE  207 (463)
T ss_pred             HHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence            88888888888  3555666677777777777776654 45788765443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.40  E-value=0.0042  Score=52.93  Aligned_cols=116  Identities=11%  Similarity=-0.018  Sum_probs=71.3

Q ss_pred             EEEEEecccchhHHHHH--hH----hhhhhhc-cc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHS--WV----YDKTYYK-TS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~--~~----~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      ..+..||.|||+..+..  ..    ....... .. ....+.........++.+......-.+..|..+.+.|+...+..
T Consensus        59 ~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~  138 (390)
T TIGR02718        59 DNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQ  138 (390)
T ss_pred             hccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHH
Confidence            35678889988654211  11    1111111 11 11233333333344455555555667788999999888877776


Q ss_pred             HHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcc
Q psy10821        120 SMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLP  163 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lp  163 (200)
                      .....+|..+++...  +.+..+|+.++++.+++.++..+..++.+
T Consensus       139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            665567777777665  46778999999998888877666655553

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.39  E-value=0.003  Score=56.05  Aligned_cols=79  Identities=10%  Similarity=-0.104  Sum_probs=48.9

Q ss_pred             HHHHHhhhhhhHHHhhccccchhHHh--HHHHHHHHHHHHHHHHHHHHH-HH--hh--------------cCchHHHHHH
Q psy10821         88 GKFCIAGSFAVIYNYSAELFPTVLRN--TGLGVGSMCARLSAALTPLIG-LM--DS--------------FDKRIPTTIF  148 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~sElfPt~vR~--tg~~l~~~~~~i~~~~~p~i~-~~--~~--------------~~~~~~~~~~  148 (200)
                      ..+......++.-++++|+.|.+.|.  .+.++......+|+.+++.+. ..  .+              .+.+..|++-
T Consensus       124 ld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~  203 (477)
T TIGR01301       124 LDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLID  203 (477)
T ss_pred             HHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHH
Confidence            34566667778889999999999875  455555555556666666655 21  11              1234456666


Q ss_pred             HHHHHHHHHHHh-hcccCC
Q psy10821        149 ATITLMSGILST-FLPETW  166 (200)
Q Consensus       149 ~~~~~~~~i~~~-~lpet~  166 (200)
                      +++.+++..... ..||.+
T Consensus       204 a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       204 IILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHeeeeeccC
Confidence            665555555444 457754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.33  E-value=0.00061  Score=58.68  Aligned_cols=88  Identities=13%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             eEEEEEecccchhHHHHHhHhhhhh---hc-cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccc-------hhHHhHH
Q psy10821         47 ESCRMFDAFTNKTMTCHSWVYDKTY---YK-TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFP-------TVLRNTG  115 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfP-------t~vR~tg  115 (200)
                      +.+.+.||+|||+....+.......   .. ...+........++.++..+..++..+.+.+|..|       .+.+++.
T Consensus       276 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  355 (437)
T TIGR00792       276 LFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV  355 (437)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence            3456789999986655333222111   11 12222333344445556666777888888888865       4556778


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy10821        116 LGVGSMCARLSAALTPLIG  134 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~  134 (200)
                      .|+......+++.+++.+.
T Consensus       356 ~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       356 YSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888887788888888877

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.30  E-value=0.00022  Score=61.41  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=36.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        111 LRNTGLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       111 vR~tg~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      .|+...+.....+.++..++|.+. .+.+.+++.+++..++.+++..+..++.
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcc
Confidence            345566677777778888888888 4555678888887777777666665554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.30  E-value=0.00082  Score=59.31  Aligned_cols=117  Identities=9%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh------hhccc---cchHHHHHHHHHHHHHHhhhhhhHHHhhccccch------
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT------YYKTS---RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPT------  109 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt------  109 (200)
                      .++++++.||+|+|+++..++.....      .....   .+........+...+..+..++..+-+++..||.      
T Consensus       303 rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~  382 (462)
T PRK15034        303 RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRV  382 (462)
T ss_pred             HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcc
Confidence            35789999999999766543331111      11111   1112222233333455566777888899999985      


Q ss_pred             ---------------hHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHHhh
Q psy10821        110 ---------------VLRNTGLGVGSMCARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       110 ---------------~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~~~  161 (200)
                                     +.=+...|+...++.+|+++.|.+.  ..+..+ ....++.+.+..+++.++.+.
T Consensus       383 ~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        383 KMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             cccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence                           1345677888888889999999887  344434 445566666666666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.29  E-value=0.00071  Score=57.69  Aligned_cols=112  Identities=12%  Similarity=0.007  Sum_probs=72.8

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhhh---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTYY---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      ..+..+.||+|+|+.+..+........   ...++.+.+....++-++..+........++++. |.+.|+++.++....
T Consensus       258 ~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~  336 (382)
T TIGR00902       258 AFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNAL  336 (382)
T ss_pred             HHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHH
Confidence            334567788998877664444332211   1233444445555666666677777788888888 999999999997655


Q ss_pred             HH-HHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH
Q psy10821        123 AR-LSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS  159 (200)
Q Consensus       123 ~~-i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~  159 (200)
                      .. ++..++|.+.  +.+..+ ...+...+++++++.+..
T Consensus       337 ~~g~g~~~g~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       337 AMGGLIAIFTAFAGFIYPTLG-AGTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence            54 7888888888  355555 355666666666554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.20  E-value=0.0022  Score=54.81  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=72.0

Q ss_pred             EEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH-H
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC-A  123 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~-~  123 (200)
                      .+.+.||+|||+....+......   ......+.++.....++.++...........+..|.+|.+.|+++.+..++. .
T Consensus       274 ~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~  353 (396)
T TIGR00882       274 APLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAK  353 (396)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHH
Confidence            35678999999766543332211   1112334444444444444444444555667888999999999988875544 4


Q ss_pred             HHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH
Q psy10821        124 RLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS  159 (200)
Q Consensus       124 ~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~  159 (200)
                      .+++.++|.+.  +.+..+....+.+.+++.++..+..
T Consensus       354 ~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       354 QLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            58999999888  4566788888888777776655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.19  E-value=0.0019  Score=56.15  Aligned_cols=122  Identities=16%  Similarity=0.083  Sum_probs=80.9

Q ss_pred             EEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCAR  124 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~  124 (200)
                      +-.+++|+|.|+.+..+......   .....++.+++...-++-++-.....-...-|+++.||+|..+|...+..+...
T Consensus       279 ~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~  358 (412)
T PF01306_consen  279 SPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAK  358 (412)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTH
T ss_pred             HHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence            34677889999777644333222   222345566666666666666667777788999999999999999999988877


Q ss_pred             -HHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHH-hhcccCCCCC
Q psy10821        125 -LSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILS-TFLPETWNMV  169 (200)
Q Consensus       125 -i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~~~  169 (200)
                       ++..+.+...  +.++.|....+.+++.+++...+.. +.++..+++.
T Consensus       359 ~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  359 QIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence             7777666666  5788887878888887777655554 4466555433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.00022  Score=61.54  Aligned_cols=119  Identities=18%  Similarity=0.144  Sum_probs=83.9

Q ss_pred             CCCeeeEEEEEecc--cchhHHHHHhH----hhhhhhcc-c-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHh
Q psy10821         42 DDGKFESCRMFDAF--TNKTMTCHSWV----YDKTYYKT-S-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRN  113 (200)
Q Consensus        42 ~~G~~~~~~l~Dr~--GRr~~~~~~~~----~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~  113 (200)
                      .||+++++++.||.  |||......+.    .+...+-. + .+........+..+++..+..-.......|.-|.+.-+
T Consensus       302 l~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaG  381 (448)
T COG2271         302 LPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAG  381 (448)
T ss_pred             hHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhcc
Confidence            57889999999995  88844432221    22221112 2 22344455566667788888888899999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHHHHh
Q psy10821        114 TGLGVGSMCARL-SAALTPLIG-L-MDSFDKRIPTTIFATITLMSGILST  160 (200)
Q Consensus       114 tg~~l~~~~~~i-~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i~~~  160 (200)
                      ++.|+.-..+.+ |...+.... . .+.++|...|+++.+.++++.+...
T Consensus       382 tA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         382 TATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             chhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            999999999997 666666666 3 4567899888888777777655443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.18  E-value=0.001  Score=56.65  Aligned_cols=114  Identities=10%  Similarity=-0.035  Sum_probs=70.5

Q ss_pred             eeeEEEEEecccchhHHHHHhHhh---hhhhc--c----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccch-hHHhH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYD---KTYYK--T----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPT-VLRNT  114 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt-~vR~t  114 (200)
                      ....+.+.||+|+|+....+....   .....  .    ............+..+..+...+.......+..+. +.|++
T Consensus       261 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  340 (390)
T TIGR02718       261 CGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGT  340 (390)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHH
Confidence            344567889999987654332211   01000  0    11112222222333444555666667777777766 89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHH
Q psy10821        115 GLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGIL  158 (200)
Q Consensus       115 g~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~  158 (200)
                      ..++.+....+++.++|.+.  +.+..+....+...+++.+++.+.
T Consensus       341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998  456667767777666666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.18  E-value=0.00077  Score=54.76  Aligned_cols=116  Identities=16%  Similarity=0.100  Sum_probs=64.2

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh-----hhcc----ccchHHHHHHH-HHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT-----YYKT----SRTMEYILYIV-FFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      ..++.++||+|.+..+..+.+....     ....    .....|..... ++.+......+........+.||. .|++.
T Consensus        54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v  132 (250)
T PF06813_consen   54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV  132 (250)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence            4458899999999765533222111     1111    11223333322 223333333445556667799995 79999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHH-HHHHHHHHhhc
Q psy10821        116 LGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATI-TLMSGILSTFL  162 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~-~~~~~i~~~~l  162 (200)
                      .|+.-....+++.+-..+. ...+.+....+.+.+.. .+++.+...++
T Consensus       133 vgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  133 VGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             ehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence            9999999888887777776 33333433334444443 33344444554

>KOG2504|consensus

Probab=97.14  E-value=0.00063  Score=60.78  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhhhcc----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTYYKT----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      ++.+.+.||+|.|.+.+.+..+.......    +.-....+...++.+++.+..+.+....++ .|-.+.|+.+.|++..
T Consensus        99 pl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~  177 (509)
T KOG2504|consen   99 PLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVS  177 (509)
T ss_pred             cHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhc
Confidence            45567889999998777654444333322    222333455566666777777777777777 6667889999999999


Q ss_pred             HHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        122 CARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       122 ~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ...+|..+.|.+.  ++++.+|+..+.+.+.+.+-..++...+
T Consensus       178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~  220 (509)
T KOG2504|consen  178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALL  220 (509)
T ss_pred             cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            9999988888777  5889999999999988887777776665

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.09  E-value=0.00059  Score=59.78  Aligned_cols=81  Identities=10%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-H-Hhhc-CchHHHHHHHHHHH
Q psy10821         77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-L-MDSF-DKRIPTTIFATITL  153 (200)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~-~~~~~~~~~~~~~~  153 (200)
                      +.+......++.++..+........+..|.+|.+.|+++.++......+++.++|.+. . .+.. ++...+++.+++.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~l  411 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVV  411 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHH
Confidence            3444444555556666677778889999999999999999999999999999999988 3 4444 36666666666555


Q ss_pred             HHHH
Q psy10821        154 MSGI  157 (200)
Q Consensus       154 ~~~i  157 (200)
                      ++.+
T Consensus       412 i~~~  415 (455)
T TIGR00892       412 SAGL  415 (455)
T ss_pred             HHHH
Confidence            5444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.07  E-value=0.0055  Score=52.18  Aligned_cols=104  Identities=5%  Similarity=0.017  Sum_probs=63.8

Q ss_pred             eeEEEEEecccchhHH----HHHh-HhhhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMT----CHSW-VYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      ++.+.+.||+||+...    ..+. .+.........+.+.+.....+...+.+...+....+..|  +.+.|++..|...
T Consensus        57 ~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~  134 (382)
T TIGR00902        57 LFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVR  134 (382)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHH
Confidence            4456788999985322    2111 1111111123344444444444445555455555566554  2577899999999


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTTIFATI  151 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~  151 (200)
                      ..+.++..++|.+.  +.+..+|+..+......
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            99999999999887  46777888877766554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11462 putative transporter; Provisional

Probab=97.03  E-value=0.019  Score=50.55  Aligned_cols=55  Identities=7%  Similarity=-0.092  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccccc-hhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         80 YILYIVFFGKFCIAGSFAVIYNYSAELFP-TVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~sElfP-t~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      |.....++...+......+..++.+|+-+ .+.|.+..++-...+.+++.+++.+.
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555666666777889999888 99999999999988888877776665

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.01  E-value=0.0006  Score=58.25  Aligned_cols=116  Identities=16%  Similarity=0.019  Sum_probs=61.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhH---hhhhh---hccccc----hHH-HHHHHHHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWV---YDKTY---YKTSRT----MEY-ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~---~~~~~---~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      +.+..+.+.||+|||+.+.....   .....   ......    ..+ .....++..+..+...+....+..|.-  +.|
T Consensus        54 ~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~  131 (396)
T TIGR00882        54 FQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNS  131 (396)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhc
Confidence            34566889999999976653211   11111   001110    011 111122222333333333344444432  223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        113 NTGLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       113 ~tg~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      +...+.....+.++..++|.+. ...+.+++.+++..+.+.++..+..+.
T Consensus       132 ~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       132 NFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             ccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence            3455666677778888888887 455678888888887777776655554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.00  E-value=0.0049  Score=51.08  Aligned_cols=87  Identities=8%  Similarity=-0.070  Sum_probs=59.7

Q ss_pred             EEEEEecccchhHHHHHhHhhhh---hhcccc-chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYDKT---YYKTSR-TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCA  123 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~  123 (200)
                      .+.+.||+|||.....+......   ...... +........++.+++.....+....+..|..|++.|++..|+.....
T Consensus       267 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (365)
T TIGR00900       267 LGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLS  346 (365)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35667888888665533221111   111122 23333444555566667777788899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10821        124 RLSAALTPLIG  134 (200)
Q Consensus       124 ~i~~~~~p~i~  134 (200)
                      .+++.++|.+.
T Consensus       347 ~~~~~~g~~~~  357 (365)
T TIGR00900       347 HAAWPLGLILA  357 (365)
T ss_pred             HHHHHHHHHHH
Confidence            99999988887

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.90  E-value=0.0031  Score=52.95  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhh---hhhcc---cc-chH-HHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDK---TYYKT---SR-TME-YILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~~~---~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      .++.+.+.||+|||+....+.....   .....   .. ... .......+.++...........+..|.+| +.|+++.
T Consensus       259 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~  337 (385)
T TIGR00710       259 GFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTAS  337 (385)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHH
Confidence            3445678899999865543221111   11110   11 112 22223334455566677777888899998 5799999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHH
Q psy10821        117 GVGSMCARL-SAALTPLIGLM  136 (200)
Q Consensus       117 ~l~~~~~~i-~~~~~p~i~~~  136 (200)
                      ++....... ++..+|.+...
T Consensus       338 ~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            998888774 55556655533

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.87  E-value=0.0031  Score=53.12  Aligned_cols=89  Identities=11%  Similarity=0.035  Sum_probs=47.2

Q ss_pred             eeEEEEEecccchhHHHHHhHhh---hhhh-c--c-ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYD---KTYY-K--T-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~---~~~~-~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      ...+.+.||+|||+....+....   .... .  . ............+..............+..|..| +.|+++.++
T Consensus       248 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~  326 (377)
T PRK11102        248 IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSL  326 (377)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHH
Confidence            33467789999997554332211   1111 0  1 1111222222222222333344445567788888 899999998


Q ss_pred             HHHHHH-HHHHHHHHHHH
Q psy10821        119 GSMCAR-LSAALTPLIGL  135 (200)
Q Consensus       119 ~~~~~~-i~~~~~p~i~~  135 (200)
                      ...... +++.+++++..
T Consensus       327 ~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        327 AGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            777655 56666666553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.84  E-value=0.0009  Score=55.75  Aligned_cols=58  Identities=28%  Similarity=0.258  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCch
Q psy10821         85 VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKR  142 (200)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~  142 (200)
                      .+..+++..+.....+.+.+|.+|++.|+++.|+......+++.++|.+.  +.+..++.
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            33334444455566678899999999999999999999999999999887  34555543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.84  E-value=0.0019  Score=62.47  Aligned_cols=90  Identities=9%  Similarity=-0.004  Sum_probs=58.0

Q ss_pred             eeeEEEEEecccchhHHHHHhHh---hhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVY---DKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      .++.+.+.||+++|.....+.+.   .........+........++.+++.+........++.|..|.+.|+++.|+...
T Consensus       286 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~  365 (1146)
T PRK08633        286 SLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF  365 (1146)
T ss_pred             HHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence            34456777888877544322221   111111222333344444555566666677788999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q psy10821        122 CARLSAALTPLIG  134 (200)
Q Consensus       122 ~~~i~~~~~p~i~  134 (200)
                      +..+++.+++.+.
T Consensus       366 ~~~lg~~~~~~~~  378 (1146)
T PRK08633        366 LQNVGMLLFLALT  378 (1146)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777666665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.83  E-value=0.021  Score=49.48  Aligned_cols=54  Identities=31%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             HHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHH-HHHHHHHHHH--HHhhcCch
Q psy10821         89 KFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCAR-LSAALTPLIG--LMDSFDKR  142 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~-i~~~~~p~i~--~~~~~~~~  142 (200)
                      +...+..+.....|+.|..|.+.|+++.++...... +++.++.++.  +.++.+..
T Consensus       312 G~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  312 GLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             hHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence            444556667778999999999999999999998877 8888888888  45555544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.81  E-value=0.00081  Score=58.74  Aligned_cols=85  Identities=12%  Similarity=0.098  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-H-Hhhc--C-chHHHHHHHHHHHHHHHHH
Q psy10821         85 VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-L-MDSF--D-KRIPTTIFATITLMSGILS  159 (200)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~--~-~~~~~~~~~~~~~~~~i~~  159 (200)
                      ..+..++.............|..|. .+++..++....+.+++.++|.+. . .+..  + +...+.+.++..+++.+..
T Consensus       368 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       368 LTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            3333344444445555566677775 899999999999999999999888 3 3322  2 5566777777777776666


Q ss_pred             hhcccCCCCCc
Q psy10821        160 TFLPETWNMVC  170 (200)
Q Consensus       160 ~~lpet~~~~l  170 (200)
                      .+.++.+.++.
T Consensus       447 ~~~~~~~~~~w  457 (465)
T TIGR00894       447 LIFGSAERQDW  457 (465)
T ss_pred             eeeecceecCC
Confidence            55554444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.80  E-value=0.014  Score=49.66  Aligned_cols=117  Identities=10%  Similarity=-0.008  Sum_probs=61.4

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhc-cccchHHHHHHHHHHHHHHhhhhh-hHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYK-TSRTMEYILYIVFFGKFCIAGSFA-VIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~sElfPt~vR~tg~~l  118 (200)
                      |.+..+.+.||+|||+....+......   ... ...+.+......++..+...+... .......+.+|.+.++.+.  
T Consensus       251 g~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--  328 (382)
T PRK10091        251 GNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--  328 (382)
T ss_pred             HhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--
Confidence            456678999999998765533222111   111 122222222222222222222222 2234555666766666553  


Q ss_pred             HHHHHHHHHHHHHHHH-H-Hhh-cCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        119 GSMCARLSAALTPLIG-L-MDS-FDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~-~-~~~-~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ......++..++|.+. . .+. .++...+.+.++.+++...+..+.
T Consensus       329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            3445568888999988 3 443 456666666666666655544443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.0027  Score=54.79  Aligned_cols=116  Identities=11%  Similarity=0.035  Sum_probs=77.5

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh-----hhccc-----cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT-----YYKTS-----RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      +.++.+.||+|.++.+...+.....     ....+     .+........+...++.....+..+-.++.+||.+. +..
T Consensus       272 p~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~-G~v  350 (417)
T COG2223         272 PLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET-GAV  350 (417)
T ss_pred             hccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhh-hHH
Confidence            5679999999988665543332211     11111     122233444445556677778888999999998844 567


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHHhhc
Q psy10821        116 LGVGSMCARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      .|+....+.+||+..|...  ..+..+ ....+.++....+++.+..+..
T Consensus       351 ~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         351 TGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999998  355555 5567777777777777765554

>PRK09669 putative symporter YagG; Provisional

Probab=96.71  E-value=0.12  Score=44.96  Aligned_cols=122  Identities=7%  Similarity=-0.063  Sum_probs=64.9

Q ss_pred             CeeeEEEEEec----ccch-hHHHHHh---Hhhh-hhhccc-----cchHHHHHHHHHHHHHHhhhhhhHHHhhcccc-c
Q psy10821         44 GKFESCRMFDA----FTNK-TMTCHSW---VYDK-TYYKTS-----RTMEYILYIVFFGKFCIAGSFAVIYNYSAELF-P  108 (200)
Q Consensus        44 G~~~~~~l~Dr----~GRr-~~~~~~~---~~~~-~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElf-P  108 (200)
                      ..++.+.+.||    +||| +.+..+.   .... ..+..+     ....+.....++..........+..++.+|+. +
T Consensus        61 ~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~  140 (444)
T PRK09669         61 TDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND  140 (444)
T ss_pred             ccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC
Confidence            45778999999    7775 3332211   1111 111111     11223333333334444455556678899988 6


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHH--HHh-------hcCchHHHHHHHHHHHHHHHHHhh-cccC
Q psy10821        109 TVLRNTGLGVGSMCARLSAALTPLIG--LMD-------SFDKRIPTTIFATITLMSGILSTF-LPET  165 (200)
Q Consensus       109 t~vR~tg~~l~~~~~~i~~~~~p~i~--~~~-------~~~~~~~~~~~~~~~~~~~i~~~~-lpet  165 (200)
                      .+.|.+..++....+.+++.+++.+.  +..       +.++...+.++++++++..+..++ .+|.
T Consensus       141 ~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        141 PRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            68899888888887777777666544  111       123334455555555554443333 3553

>TIGR00788 fbt folate/biopterin transporter

Probab=96.67  E-value=0.012  Score=51.86  Aligned_cols=120  Identities=17%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             eeEEEEEeccc-----chhHHHHHhHhh-hhhh--cc-ccc-hHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         46 FESCRMFDAFT-----NKTMTCHSWVYD-KTYY--KT-SRT-MEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        46 ~~~~~l~Dr~G-----Rr~~~~~~~~~~-~~~~--~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      ++.+.+.||++     ||+.+..++... ....  .. ..+ ........++..++.+......-.+..|..+ +.+..+
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~  156 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAG  156 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcC
Confidence            45688999997     565444333322 1111  11 122 2223334555666777777788899999998 555443


Q ss_pred             ---HHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        116 ---LGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       116 ---~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                         .++.+..-.+|..+++.+.  +.+..+|...+++.+++.++..+...++||.+
T Consensus       157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence               3444554447777787777  35566888888888888777766667778864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10054 putative transporter; Provisional

Probab=96.59  E-value=0.025  Score=48.55  Aligned_cols=108  Identities=12%  Similarity=0.046  Sum_probs=64.3

Q ss_pred             EEEecccchhHHHHHhHhhhh---hhccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHH
Q psy10821         50 RMFDAFTNKTMTCHSWVYDKT---YYKTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARL  125 (200)
Q Consensus        50 ~l~Dr~GRr~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i  125 (200)
                      .+.||.+||.....+......   ..... .+.+.......+.+++.....+....++.|.-|++.|++..+. ++.+.+
T Consensus       266 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~-~~~~~~  344 (395)
T PRK10054        266 RRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSA-QSLGWL  344 (395)
T ss_pred             HHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhH-HHHHHH
Confidence            446888888765543322111   11111 2222233344444555555566677889999999999998875 346668


Q ss_pred             HHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHH
Q psy10821        126 SAALTPLIG--LMDSFDKRIPTTIFATITLMSGIL  158 (200)
Q Consensus       126 ~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~  158 (200)
                      +..++|.+.  +.+..+....+.+.+....+..+.
T Consensus       345 G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        345 GAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            999999998  456666555555554444444333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.58  E-value=0.088  Score=44.83  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             EEEEEecccchhHHHH---HhHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhH-HHhhcc----ccchhHHhHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCH---SWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVI-YNYSAE----LFPTVLRNTGLGVG  119 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~sE----lfPt~vR~tg~~l~  119 (200)
                      .+.+.||+|||+..+.   .+..... ....++...++...+++++..+..+++. .-++.|    =||.+..+.-.+..
T Consensus        89 ~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~  167 (354)
T PF05631_consen   89 VGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLA  167 (354)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            3678899999976543   2222222 2335667777888888888777666653 334444    45555544444433


Q ss_pred             HHHH-HHHHHHHHHHH----HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCCCC
Q psy10821        120 SMCA-RLSAALTPLIG----LMDSFDKRIPTTIFATITLMSGILSTF-LPETWNM  168 (200)
Q Consensus       120 ~~~~-~i~~~~~p~i~----~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~  168 (200)
                      ...+ .+.++.+..+.    -....+...||.....+.+++.+++.. .+|..+.
T Consensus       168 tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  168 TFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            3222 23333333343    223345678888888877777766654 4775443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.57  E-value=0.0063  Score=52.13  Aligned_cols=118  Identities=11%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             CeeeEEEEEecccchhHHHHHhHh---hhhhh---cc-ccchHHHHHHH----HHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVY---DKTYY---KT-SRTMEYILYIV----FFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~---~~~~~---~~-~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      |..+++.+.||+|||+........   .....   .. ..+.+......    +...+...........+..|.+|.+.+
T Consensus       262 g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  341 (402)
T PRK11902        262 GALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY  341 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            444557778999988655422211   11111   11 12222222222    223344556677778899999998776


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcccC
Q psy10821        113 NTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLPET  165 (200)
Q Consensus       113 ~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet  165 (200)
                      +...+    ...+++...+.+.  +.+..++...+...+++++++.++....+.+
T Consensus       342 ~~~~~----~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        342 ALLSA----LASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            54222    2223333222233  4677888888888888888877777666544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.54  E-value=0.0018  Score=56.10  Aligned_cols=126  Identities=14%  Similarity=0.098  Sum_probs=91.3

Q ss_pred             CCeeeEEEEEecccchhHHHHHhH---hhhhhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWV---YDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +|..+.+++-||+|-|++...+.+   +............-.....++.+.+.++.++..=.|.+++.|.+.-++..|+-
T Consensus       303 lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgly  382 (438)
T COG2270         303 LGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLY  382 (438)
T ss_pred             HHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehh
Confidence            366777888899999976654332   22222222233334556667778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHh--hcCchHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy10821        120 SMCARLSAALTPLIG-LMD--SFDKRIPTTIFATITLMSGILSTFLPETWNM  168 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~-~~~--~~~~~~~~~~~~~~~~~~~i~~~~lpet~~~  168 (200)
                      ...++..++++|+.. ...  ..+.+..+....++-.++.+...+.|+.+++
T Consensus       383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~  434 (438)
T COG2270         383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRR  434 (438)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCCc
Confidence            999999999999999 332  2335566666677777777777777655443

>TIGR00901 2A0125 AmpG-related permease

Probab=96.51  E-value=0.0011  Score=55.56  Aligned_cols=80  Identities=5%  Similarity=-0.022  Sum_probs=51.9

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh-----hhcc-c--------cchHHHHHHHHHHHHHHhhhhhhHHHhhccccch
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT-----YYKT-S--------RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPT  109 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~-----~~~~-~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt  109 (200)
                      |.++++.+.||+|||+....+......     .... .        .+........++..+.....++....+..|.+|+
T Consensus       261 g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  340 (356)
T TIGR00901       261 GGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP  340 (356)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence            445567888999988654422221111     1111 1        1222334444455677788899999999999999


Q ss_pred             hHHhHHHHHHHHHH
Q psy10821        110 VLRNTGLGVGSMCA  123 (200)
Q Consensus       110 ~vR~tg~~l~~~~~  123 (200)
                      +.|++..|+.+...
T Consensus       341 ~~~g~~~g~~~~~~  354 (356)
T TIGR00901       341 KFGATQMALLSSLS  354 (356)
T ss_pred             CccHHHHHHHHHHH
Confidence            99999999987654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.48  E-value=0.078  Score=47.13  Aligned_cols=121  Identities=17%  Similarity=0.066  Sum_probs=72.5

Q ss_pred             eEEEEEecccchhHHHHHhH-----hhhhhh-ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHH--------
Q psy10821         47 ESCRMFDAFTNKTMTCHSWV-----YDKTYY-KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR--------  112 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR--------  112 (200)
                      +-+.+.|+-|+|+-+.....     ...... ....+..+...+.++...+.........++++|+-+.+-+        
T Consensus        89 ~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~  168 (477)
T PF11700_consen   89 FLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPS  168 (477)
T ss_pred             HHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhh
Confidence            34677899888854432211     111111 2233333345555556667777777788999999999988        


Q ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHHH--HhhcC--------chHHHHHHHHHHHH-HHHHHhhcc
Q psy10821        113 ------------------NTGLGVGSMCARLSAALTPLIGL--MDSFD--------KRIPTTIFATITLM-SGILSTFLP  163 (200)
Q Consensus       113 ------------------~tg~~l~~~~~~i~~~~~p~i~~--~~~~~--------~~~~~~~~~~~~~~-~~i~~~~lp  163 (200)
                                        ++-.+..+..|.+|+.+.-.+.+  ....+        .+..+.+.++.-++ +....+++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~  248 (477)
T PF11700_consen  169 ANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLP  248 (477)
T ss_pred             ccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence                              89999999999998888777662  11111        23334444443333 444455567


Q ss_pred             cCCC
Q psy10821        164 ETWN  167 (200)
Q Consensus       164 et~~  167 (200)
                      |.++
T Consensus       249 ~~~~  252 (477)
T PF11700_consen  249 DRPG  252 (477)
T ss_pred             CCCC
Confidence            7654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.48  E-value=0.0047  Score=53.84  Aligned_cols=90  Identities=11%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhh---hhc--c--ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKT---YYK--T--SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      .++++.+.||+|||+....+......   ...  .  ..+........++.+++.+..+........|..|.+.|+++.+
T Consensus       308 ~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       308 SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS  387 (485)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence            34557788999999766543322211   111  1  1222333444445556666666666777778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10821        118 VGSMCARLSAALTPLIG  134 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~  134 (200)
                      +......+++.+++.+.
T Consensus       388 ~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALI  404 (485)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888888888776

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.45  E-value=0.0063  Score=50.75  Aligned_cols=100  Identities=13%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.+++..+.||+|+|+++..+.......   ...... .......++.+++.+..++.......|.+|.+. +++.++ .
T Consensus       194 Gr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~~asai-~  270 (310)
T TIGR01272       194 GRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG-YVAMWFVLALGLFNSIMFPTIFSLALNALGRHT-SQGSGI-L  270 (310)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhHHH-H
Confidence            3455567789999876554332222111   111111 222334445678888999999999999888753 455555 3


Q ss_pred             HHHHHHHHHHHHHH--HHhhcCchHHHH
Q psy10821        121 MCARLSAALTPLIG--LMDSFDKRIPTT  146 (200)
Q Consensus       121 ~~~~i~~~~~p~i~--~~~~~~~~~~~~  146 (200)
                      ..+.+|+.+.|.+.  ..+..+....++
T Consensus       271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       271 CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            66778999999877  456667655554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.43  E-value=0.017  Score=51.92  Aligned_cols=93  Identities=17%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHH
Q psy10821         75 SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATIT  152 (200)
Q Consensus        75 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~  152 (200)
                      ..+.+......++.+++.........+..-+.-|.++|++..|+...+...+..++.++.  +.+..+....+.+.++..
T Consensus       304 ~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l  383 (524)
T PF05977_consen  304 SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL  383 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            333344444555556666667777788899999999999999999888877777777777  456677776666666555


Q ss_pred             HHHHHHHhh--cccCCC
Q psy10821        153 LMSGILSTF--LPETWN  167 (200)
Q Consensus       153 ~~~~i~~~~--lpet~~  167 (200)
                      +++.++...  +|+.+.
T Consensus       384 ll~~~~~~~~~l~~~~~  400 (524)
T PF05977_consen  384 LLSALIALRFPLRQGEE  400 (524)
T ss_pred             HHHHHHHHHhcCccccc
Confidence            555544433  454443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.011  Score=50.92  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh----hhcc--ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT----YYKT--SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      ..++++.+|+|+|.-...++.....    ....  ..+....+...++...+..........|++.+.|.+.-+.=+++.
T Consensus        66 lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~  145 (422)
T COG0738          66 LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLA  145 (422)
T ss_pred             ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHH
Confidence            3457888999999665544432222    1111  233444455556666677777888889999999999889999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10821        120 SMCARLSAALTPLIG  134 (200)
Q Consensus       120 ~~~~~i~~~~~p~i~  134 (200)
                      ...+.+|+.++|.+.
T Consensus       146 q~fn~lGa~~gp~~g  160 (422)
T COG0738         146 QAFNGLGAILGPLLG  160 (422)
T ss_pred             HHhhhhHHHHHHHHH
Confidence            999999999999988

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.38  E-value=0.013  Score=48.27  Aligned_cols=85  Identities=18%  Similarity=0.269  Sum_probs=58.7

Q ss_pred             eEEEEEecccchhHHHH---HhHhhhhhhcc---ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         47 ESCRMFDAFTNKTMTCH---SWVYDKTYYKT---SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        47 ~~~~l~Dr~GRr~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      ..+.+.||+|+|+....   ...........   ..+..+.....++.+++.+..++....+..|.+|++.|++..|+..
T Consensus       262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  341 (352)
T PF07690_consen  262 LAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFN  341 (352)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44677799988643321   11111111111   2233455555556666777788899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy10821        121 MCARLSAALTP  131 (200)
Q Consensus       121 ~~~~i~~~~~p  131 (200)
                      ....+++.++|
T Consensus       342 ~~~~~~~~igP  352 (352)
T PF07690_consen  342 SIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
Confidence            99999998887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.14  E-value=0.014  Score=49.91  Aligned_cols=88  Identities=11%  Similarity=-0.022  Sum_probs=49.2

Q ss_pred             eeEEEEEecccchhHHHHHhHhhh---hh--h---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDK---TY--Y---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~---~~--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      +..+.+.||+|||+....+.....   ..  .   ....+..+.....++.+++.....+......... +.+.|++..+
T Consensus       269 ~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~  347 (406)
T PRK15402        269 LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSA  347 (406)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHH
Confidence            444677799999865543322111   10  0   1122233333334444444444444443333333 3388999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10821        118 VGSMCARLSAALTPLIG  134 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~  134 (200)
                      +......++..+++.+.
T Consensus       348 ~~~~~~~~~~~~g~~~~  364 (406)
T PRK15402        348 AMGMLSMLIFTVGIELS  364 (406)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888888888888777

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.13  E-value=0.23  Score=43.74  Aligned_cols=90  Identities=6%  Similarity=-0.050  Sum_probs=51.1

Q ss_pred             eeeEEEEEe----cccch-hHHHHHhHhhhh----hhccc--cc---hHHHHHHHHHHHHHHhhhhhhHHHhhcccc-ch
Q psy10821         45 KFESCRMFD----AFTNK-TMTCHSWVYDKT----YYKTS--RT---MEYILYIVFFGKFCIAGSFAVIYNYSAELF-PT  109 (200)
Q Consensus        45 ~~~~~~l~D----r~GRr-~~~~~~~~~~~~----~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~sElf-Pt  109 (200)
                      .++.+.+.|    |+||| +.+..+......    .+...  +.   ..+.....++...+......+..++.+|+- +.
T Consensus        59 dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~  138 (473)
T PRK10429         59 DPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK  138 (473)
T ss_pred             hchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH
Confidence            466789999    56995 333222111111    11111  11   122333333444555666667778899998 69


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821        110 VLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus       110 ~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      +.|.+..++....+.+++.+.+.+.
T Consensus       139 ~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429        139 REREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887666666655554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.11  E-value=0.0033  Score=55.44  Aligned_cols=118  Identities=11%  Similarity=0.025  Sum_probs=79.4

Q ss_pred             eeEEEEEecc-cchhHHHHH-hHhhhh--hhccc--cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH--HhHHHH
Q psy10821         46 FESCRMFDAF-TNKTMTCHS-WVYDKT--YYKTS--RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL--RNTGLG  117 (200)
Q Consensus        46 ~~~~~l~Dr~-GRr~~~~~~-~~~~~~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v--R~tg~~  117 (200)
                      .+++++.||+ |+|+..+.+ .++...  ....+  .....+.....+...+.+..=+....+++|+||.+.  |-.+.+
T Consensus        79 i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt  158 (498)
T COG3104          79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFT  158 (498)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCcc
Confidence            4568999995 888655533 222221  11122  223344333344445566666677889999998532  778888


Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcc
Q psy10821        118 VGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLP  163 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lp  163 (200)
                      +-|...++|+.++|++.  ..++.++...|...++-...+++..+..+
T Consensus       159 ~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         159 LFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             EEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            88999999999999999  46778888888888887777777666543

>TIGR00788 fbt folate/biopterin transporter

Probab=95.99  E-value=0.044  Score=48.36  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcC-----chH---HHHHHHHH
Q psy10821         82 LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFD-----KRI---PTTIFATI  151 (200)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~-----~~~---~~~~~~~~  151 (200)
                      .....+..+.....+.+...+++|+-|.+.+++..++...+..++..+++.+.  +.+..+     .+.   ...+..+.
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~  434 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLA  434 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHH
Confidence            33344455555666777799999999999999999999999999988888765  233333     222   22233334


Q ss_pred             HHHHHHHHhhccc
Q psy10821        152 TLMSGILSTFLPE  164 (200)
Q Consensus       152 ~~~~~i~~~~lpe  164 (200)
                      .++.....+++|+
T Consensus       435 ~l~~l~~~~llP~  447 (468)
T TIGR00788       435 PLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHhCCC
Confidence            4444445556786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.96  E-value=0.15  Score=43.34  Aligned_cols=108  Identities=13%  Similarity=0.091  Sum_probs=62.1

Q ss_pred             EEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCAR  124 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~  124 (200)
                      .+.+.||+|+|+.+..+......   .....++.+......++.++...........+..|. |.+.+++..++......
T Consensus       260 ~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  338 (382)
T PRK11128        260 SNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAM  338 (382)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHH
Confidence            34677899998765543332221   111233334444444455555555566667777887 45556888887766655


Q ss_pred             -HHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHH
Q psy10821        125 -LSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGI  157 (200)
Q Consensus       125 -i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i  157 (200)
                       ++..++|.+. . .+..+. ..++..+++.+.+++
T Consensus       339 ~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        339 GGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence             5667888888 3 455554 455555555544443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.92  E-value=0.04  Score=47.35  Aligned_cols=73  Identities=16%  Similarity=0.108  Sum_probs=48.8

Q ss_pred             HHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-H-Hhhc---C-chHHHHHHHHHHHHHHHH
Q psy10821         86 FFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-L-MDSF---D-KRIPTTIFATITLMSGIL  158 (200)
Q Consensus        86 ~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~---~-~~~~~~~~~~~~~~~~i~  158 (200)
                      .+.........+....+..|..|.+.|++..|+......++..++|.+. . .+..   + ...++...++++++..+.
T Consensus       305 ~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        305 CLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            3334444455566678899999999999999998777778999999888 3 3332   2 234444445555555444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.77  E-value=0.029  Score=48.13  Aligned_cols=122  Identities=7%  Similarity=-0.096  Sum_probs=66.4

Q ss_pred             EEEEecccchhHHHHHhHhhhhh--hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH-HhHHHHHHHHHHHH
Q psy10821         49 CRMFDAFTNKTMTCHSWVYDKTY--YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL-RNTGLGVGSMCARL  125 (200)
Q Consensus        49 ~~l~Dr~GRr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v-R~tg~~l~~~~~~i  125 (200)
                      ..+.||.++|++...+.......  .....+..+.....++.+++.............|.-|.+. |+++.++.+....+
T Consensus       262 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~  341 (393)
T PRK11195        262 ARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENL  341 (393)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHH
Confidence            45567777775544333222111  1112222223333334445555545556666778766665 79999998888888


Q ss_pred             HHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHH--hhcccCCCCCc
Q psy10821        126 SAALTPLIG-LMDSFDKRIPTTIFATITLMSGILS--TFLPETWNMVC  170 (200)
Q Consensus       126 ~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~--~~lpet~~~~l  170 (200)
                      +..++..+. .....+....+.+.+...+.++...  +...|..++..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK11195        342 AMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWRWHRRNQRQF  389 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            887777776 5667776666555444444444333  33344444433

>PRK11043 putative transporter; Provisional

Probab=95.63  E-value=0.031  Score=47.65  Aligned_cols=49  Identities=8%  Similarity=0.043  Sum_probs=35.5

Q ss_pred             HHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         85 VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      ..+..+..+..++.......|.+| +.|+++.|+...++..++..++.+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~  351 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLV  351 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666666677778887 4799999999988877777777766

>TIGR00889 2A0110 nucleoside transporter

Probab=95.63  E-value=0.021  Score=49.55  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=23.3

Q ss_pred             HHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        125 LSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       125 i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ++..++|.+. .......+.+++..++..++..+..+++||++
T Consensus       141 lG~~ig~~l~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       141 IGFIAAMWAVSLLDIELSNIQLYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4455555555 23222234466666666666665666678763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0252|consensus

Probab=95.61  E-value=0.0014  Score=57.32  Aligned_cols=125  Identities=18%  Similarity=0.085  Sum_probs=76.0

Q ss_pred             CCeeeEEEEEecccchhHHHHH---hHhhh----hhhcc-c--cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHS---WVYDK----TYYKT-S--RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR  112 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~---~~~~~----~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR  112 (200)
                      .|.+..+++-||+|||.+....   .+++.    ..... +  ....|+.+.+.+.+++.++=++...+.++|.--.+-|
T Consensus        99 ~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R  178 (538)
T KOG0252|consen   99 FGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR  178 (538)
T ss_pred             HHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc
Confidence            4667789999999999543211   11221    11111 1  2345677778888899999999999999999999999


Q ss_pred             hHHHHHHHHHH---HHHHHHHHHHH-H-Hh----h--------cCchHHHHHHHHHHHHHHHHHhhcccCCC
Q psy10821        113 NTGLGVGSMCA---RLSAALTPLIG-L-MD----S--------FDKRIPTTIFATITLMSGILSTFLPETWN  167 (200)
Q Consensus       113 ~tg~~l~~~~~---~i~~~~~p~i~-~-~~----~--------~~~~~~~~~~~~~~~~~~i~~~~lpet~~  167 (200)
                      ++-.+...++.   .+.|++...+. . .+    .        .-|+..+.+.++.++.....-+..|||+.
T Consensus       179 Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~  250 (538)
T KOG0252|consen  179 GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETAR  250 (538)
T ss_pred             cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchh
Confidence            99888775553   33333333333 1 11    1        11333444444444444444445699864

>PRK09669 putative symporter YagG; Provisional

Probab=95.55  E-value=0.048  Score=47.41  Aligned_cols=89  Identities=10%  Similarity=0.047  Sum_probs=52.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhh---h-hhcc-ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH-----H--h
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDK---T-YYKT-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL-----R--N  113 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v-----R--~  113 (200)
                      ++...+.||+|||+....+.....   . .... ..+........++.++.........+...+|..+.+.     |  +
T Consensus       282 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g  361 (444)
T PRK09669        282 LLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG  361 (444)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence            344578899999976553322111   1 1111 2233334444555667777788889999999987332     2  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy10821        114 TGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus       114 tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      ...|.......++..++|.+.
T Consensus       362 ~~~s~~~~~~klg~alg~~i~  382 (444)
T PRK09669        362 LVFSTNLFAIKLGLAIGGAVV  382 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344555555567777777766

>KOG3762|consensus

Probab=95.48  E-value=0.0037  Score=55.77  Aligned_cols=118  Identities=21%  Similarity=0.231  Sum_probs=84.3

Q ss_pred             CCeeeEEEEEecccchhHHHHHhHhhh--hhhcc-ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWVYDK--TYYKT-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVG  119 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~  119 (200)
                      +-++.+..++.|+|+-++++.+++.-.  +.+.. -.++|..+-+-++-++..+..|..+-.|++..-|++.|.++.++.
T Consensus       421 ~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~  500 (618)
T KOG3762|consen  421 LFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLL  500 (618)
T ss_pred             HHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHH
Confidence            334555677788898766654433221  11111 234455566778888899999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHh
Q psy10821        120 SMCAR-LSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILST  160 (200)
Q Consensus       120 ~~~~~-i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~  160 (200)
                      ...-- +|-+++.++.  .....+....|.++++.+++.++...
T Consensus       501 ~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  501 QGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            88865 6777777777  35667777788888887777665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.45  E-value=0.24  Score=42.90  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHH
Q psy10821         85 VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRIP  144 (200)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~  144 (200)
                      +.+.+...........++.+|.-|.+.|++..++.+.+--++-+++..+.  ++++++....
T Consensus        96 F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   96 FLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             HHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence            33345556667777889999999999999999999999888888888887  4666654443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=95.41  E-value=0.009  Score=49.93  Aligned_cols=82  Identities=7%  Similarity=0.046  Sum_probs=50.0

Q ss_pred             CeeeEEEEEecccchhHHHHHhH---hhh--hhhcccc--chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWV---YDK--TYYKTSR--TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~---~~~--~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      |.++.+.+.||+|||+.......   ...  .......  +.........+..+..+...+..+.+.+|++| +.|++..
T Consensus       277 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~  355 (366)
T TIGR00886       277 ARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVS  355 (366)
T ss_pred             HhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHH
Confidence            45667889999999754432221   111  1111121  22223333444445555666778888999998 6999999


Q ss_pred             HHHHHHHHHH
Q psy10821        117 GVGSMCARLS  126 (200)
Q Consensus       117 ~l~~~~~~i~  126 (200)
                      |+...+++++
T Consensus       356 g~~~~~~~~g  365 (366)
T TIGR00886       356 GLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccCC
Confidence            9998887764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.29  E-value=0.021  Score=50.52  Aligned_cols=90  Identities=10%  Similarity=-0.042  Sum_probs=59.5

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhh-----hcc-ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTY-----YKT-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      .++.+.+.||+|||+....+.......     ... ..+........++.+++.+...........+..|.+.|+.+.++
T Consensus       312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~  391 (495)
T PRK14995        312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI  391 (495)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence            345567889999997665443322111     111 12222334445555666666777777888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10821        119 GSMCARLSAALTPLIG  134 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~  134 (200)
                      ......+++.+++.+.
T Consensus       392 ~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        392 ETMAYELGAGLGIAIF  407 (495)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888778877777666

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.17  E-value=0.21  Score=43.27  Aligned_cols=118  Identities=13%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             CCeeeEEEEEecccchhHHHHHhH---hhhhhhccccchHH-HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         43 DGKFESCRMFDAFTNKTMTCHSWV---YDKTYYKTSRTMEY-ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        43 ~G~~~~~~l~Dr~GRr~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      .|+.+++.+.|| +.|..+.....   .....+....+..+ ......+.++.............+| .-++.+..+.++
T Consensus       262 ~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl  339 (394)
T COG2814         262 IGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSL  339 (394)
T ss_pred             HHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHH
Confidence            367888999999 66654443211   11111222222223 2333333444444444445566666 567889999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        119 GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       119 ~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      ....-+++...+..+.  ..++.+.....+..+++.+++.++.+..
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888888877  4666888888888888888877776654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=94.94  E-value=0.037  Score=47.00  Aligned_cols=19  Identities=21%  Similarity=0.300  Sum_probs=13.4

Q ss_pred             eeEEEEEecccchhHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHS   64 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~   64 (200)
                      ...+.+.||+|||+....+
T Consensus       257 ~~~~~l~~r~g~~~~~~~~  275 (392)
T PRK10473        257 FSTPFALGIFKPRTLMLTS  275 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHH
Confidence            3446778999999766543

>PRK10133 L-fucose transporter; Provisional

Probab=94.94  E-value=0.05  Score=47.55  Aligned_cols=99  Identities=7%  Similarity=0.037  Sum_probs=58.1

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      +.++.+.||+|||+....+......   ........ +......+.+++.+..++.......|.+|.+ -+++.++.. +
T Consensus       313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~  389 (438)
T PRK10133        313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-M  389 (438)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-H
Confidence            4457788999998665433221111   11112222 2344455667888999999999999999875 456666664 3


Q ss_pred             HHHHHHHHHHHH-H-HhhcC-chHHHHH
Q psy10821        123 ARLSAALTPLIG-L-MDSFD-KRIPTTI  147 (200)
Q Consensus       123 ~~i~~~~~p~i~-~-~~~~~-~~~~~~~  147 (200)
                      ..+++.+.|.+. . .+..+ ....+.+
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             HhccchHHHHHHHHHHHhccchHHHHHH
Confidence            445666666555 3 44444 3444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=94.90  E-value=0.05  Score=47.11  Aligned_cols=88  Identities=9%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      |.++++.+.||+++|+++..........   .....+. .......+.+++.+..++..+....+..+.+.+..+..+..
T Consensus       285 GR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~  363 (410)
T TIGR00885       285 SRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM  363 (410)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            3455677789999987654333222211   1112222 23455555667888888999999999999988776777666


Q ss_pred             HHHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG  134 (200)
Q Consensus       121 ~~~~i~~~~~p~i~  134 (200)
                      .+  +|+.+.|.+.
T Consensus       364 ~~--~Gga~~p~l~  375 (410)
T TIGR00885       364 AI--IGGGIVPPLQ  375 (410)
T ss_pred             HH--hccchHHHHH
Confidence            55  8888888888

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09848 glucuronide transporter; Provisional

Probab=94.85  E-value=0.51  Score=40.99  Aligned_cols=87  Identities=10%  Similarity=0.053  Sum_probs=51.3

Q ss_pred             EEEEEecccchhHHHHHhHhhhh---hh-ccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchh-------HHhHH
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYDKT---YY-KTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTV-------LRNTG  115 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~-------vR~tg  115 (200)
                      ...+.||+|+|+....+......   .. ... .+.+......++.+++.....+......+|.-|.+       .++..
T Consensus       284 ~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~  363 (448)
T PRK09848        284 VPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLT  363 (448)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHH
Confidence            34567889988665543322211   11 111 22233333344556667777778888888888754       34666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy10821        116 LGVGSMCARLSAALTPLIG  134 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~  134 (200)
                      .|+......++..+++.+.
T Consensus       364 ~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        364 YSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7776666667777777766

>KOG4686|consensus

Probab=94.80  E-value=0.076  Score=44.43  Aligned_cols=88  Identities=15%  Similarity=0.033  Sum_probs=55.0

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhh----hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTY----YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +++.+.++||.||+..+..........    ...+.-.++.  ...+.+...+......|..++-+-|-+.-+|+.++.+
T Consensus       317 spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~--~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~q  394 (459)
T KOG4686|consen  317 SPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYT--SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQ  394 (459)
T ss_pred             hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHH--HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHH
Confidence            466788999999995544322211110    0111111221  2222233333334446777788888899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy10821        121 MCARLSAALTPLIG  134 (200)
Q Consensus       121 ~~~~i~~~~~p~i~  134 (200)
                      .+.+++-.+.|.++
T Consensus       395 sIqNLgla~i~Iia  408 (459)
T KOG4686|consen  395 SIQNLGLAFIPIIA  408 (459)
T ss_pred             HHHhhhhhHHhhhh
Confidence            99999999999998

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=94.66  E-value=0.4  Score=42.38  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHHH--HhhcCchHHHHHHHHHHH
Q psy10821         76 RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGL--MDSFDKRIPTTIFATITL  153 (200)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~~--~~~~~~~~~~~~~~~~~~  153 (200)
                      .+.+|++...++.+++.....+....+.+|.-|.+.|++.+|+......++..+++.+..  ....++...+...++.++
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTL  458 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence            356777888888888999999999999999999999999999999888888888877773  233345555555666555


Q ss_pred             HHHHHHh
Q psy10821        154 MSGILST  160 (200)
Q Consensus       154 ~~~i~~~  160 (200)
                      +..+..+
T Consensus       459 ~~~~~~~  465 (475)
T TIGR00924       459 LVGVVMA  465 (475)
T ss_pred             HHHHHHH
Confidence            5544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.59  E-value=0.41  Score=42.11  Aligned_cols=87  Identities=7%  Similarity=0.049  Sum_probs=52.5

Q ss_pred             EEEEEecccchhHHHHHhHhh---hhhh-----ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccc-----cchhHHhH
Q psy10821         48 SCRMFDAFTNKTMTCHSWVYD---KTYY-----KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAEL-----FPTVLRNT  114 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sEl-----fPt~vR~t  114 (200)
                      ...+.||+|||+....+....   ....     ....+....+...++.++..+..+...+.+++|.     +++..|..
T Consensus       286 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        286 FPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            356778999997654322211   1111     1122233334444455566777778889999999     66778877


Q ss_pred             HHHHHHHH--HHHHHHHHHHHH
Q psy10821        115 GLGVGSMC--ARLSAALTPLIG  134 (200)
Q Consensus       115 g~~l~~~~--~~i~~~~~p~i~  134 (200)
                      |..++...  ..++..+++.+.
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~  387 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFI  387 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            77666554  347777777766

>KOG2504|consensus

Probab=94.58  E-value=0.044  Score=49.08  Aligned_cols=122  Identities=13%  Similarity=0.082  Sum_probs=86.7

Q ss_pred             CCCeeeEEEEEecccchh--HHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         42 DDGKFESCRMFDAFTNKT--MTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        42 ~~G~~~~~~l~Dr~GRr~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      ..|.++.+++.|+...+.  +...+.+...+   ......+...+....++.+++.+...+.....+.|+.+++.=..+.
T Consensus       347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~  426 (509)
T KOG2504|consen  347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAY  426 (509)
T ss_pred             hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHH
Confidence            457788899999988432  22222222222   2222344445556666667777778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-H-HhhcC-chHHHHHHHHHHHHHHHHHhhcc
Q psy10821        117 GVGSMCARLSAALTPLIG-L-MDSFD-KRIPTTIFATITLMSGILSTFLP  163 (200)
Q Consensus       117 ~l~~~~~~i~~~~~p~i~-~-~~~~~-~~~~~~~~~~~~~~~~i~~~~lp  163 (200)
                      |+...+..++..++|-+. . .+..+ +...++..++..+++.++.+..|
T Consensus       427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999988888 3 44444 66778888888888887777666

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=94.16  E-value=0.63  Score=39.46  Aligned_cols=53  Identities=19%  Similarity=0.157  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      .....++..++.....+....+..|.+| +.|++..++......+++.+++.+.
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~  354 (394)
T PRK11652        302 LLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS  354 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555566677778888889998 5789998888888889999988887

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=94.06  E-value=0.2  Score=43.00  Aligned_cols=75  Identities=11%  Similarity=0.090  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHH
Q psy10821         81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSG  156 (200)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~  156 (200)
                      .....++.++...........++.+..|.+ +++..+.......++..++|.+.  +.+..+....+...+.+.++..
T Consensus       308 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        308 ATGVAIIWGLTFALVPVGWSTWITRSLADQ-AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            333444445555555666666777777744 44555555556667888888888  4555666666666555544433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=93.78  E-value=0.45  Score=42.38  Aligned_cols=56  Identities=11%  Similarity=0.019  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHH
Q psy10821         78 MEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLI  133 (200)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i  133 (200)
                      .+|.+...++.+++.....+....++.+.-|.+.|++.+|+-.....+++.++..+
T Consensus       382 ~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~  437 (500)
T PRK09584        382 VNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYV  437 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44777778888888888899999999999999999999997654444444444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=93.76  E-value=0.11  Score=50.59  Aligned_cols=54  Identities=9%  Similarity=-0.075  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      ..+..++.+++.+........++.|..|.+.|++..|+...+..++..+++.+.
T Consensus       337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence            334444555666666777889999999999999999999999888888888877

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.56  E-value=1.2  Score=34.62  Aligned_cols=91  Identities=16%  Similarity=0.269  Sum_probs=56.8

Q ss_pred             CeeeEEEEEecccchhHHHHHhH---hhhhhhcccc--chHHHHHHHHHHHHHHhhhhhhHHHhhccccch-hHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWV---YDKTYYKTSR--TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPT-VLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt-~vR~tg~~  117 (200)
                      +.+..+.+.||+|||.....+..   ..........  ............++..+...+....+.+|.+|. +.|+...+
T Consensus        55 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (338)
T COG0477          55 GSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVG  134 (338)
T ss_pred             HhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            34678999999999955543332   1111111111  233344444445556667778889999999998 67888888


Q ss_pred             HHHHH-HHHHHHHHHHHH
Q psy10821        118 VGSMC-ARLSAALTPLIG  134 (200)
Q Consensus       118 l~~~~-~~i~~~~~p~i~  134 (200)
                      ..... ..++..++|.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~  152 (338)
T COG0477         135 LVTLGAGALGLALGPLLA  152 (338)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            77774 446666676554

>KOG2563|consensus

Probab=93.52  E-value=0.28  Score=43.20  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh----hhccc----cchHHHHHHHHHHHHHHhhhhh----hHHHhhccccchhHHh
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT----YYKTS----RTMEYILYIVFFGKFCIAGSFA----VIYNYSAELFPTVLRN  113 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~l~~~~~~~~~~----~~~~~~sElfPt~vR~  113 (200)
                      +.++++.||+|-|.....+...-.+    -...+    .+..+. -+...+....+..+.    ...-+.+-.||++.|+
T Consensus        97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra  175 (480)
T KOG2563|consen   97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA  175 (480)
T ss_pred             hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence            5678999999999655432221111    11111    111221 122223333333322    2334555689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy10821        114 TGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus       114 tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      ++..++...+-+|..++-++-
T Consensus       176 ~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  176 IATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             hhhhHHHhcchHHHHHHhhcc
Confidence            999999888666655544444

>TIGR00896 CynX cyanate transporter

Probab=93.02  E-value=0.17  Score=42.25  Aligned_cols=49  Identities=16%  Similarity=0.108  Sum_probs=35.1

Q ss_pred             HHHHHHHhhhhhhHHHhhc-cccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         86 FFGKFCIAGSFAVIYNYSA-ELFPTVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        86 ~l~~~~~~~~~~~~~~~~s-ElfPt~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      .+.+++.+..++....... +..+++.|++..++....+.+++.++|.+.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~  342 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV  342 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555554 455678889999999988888888999887

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=91.44  E-value=1.2  Score=39.78  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHhhccccchhHH--hHHHHHHHHHHHHHHHHHHHHH-H---HhhcCchHHHHHHHHHH
Q psy10821         79 EYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLR--NTGLGVGSMCARLSAALTPLIG-L---MDSFDKRIPTTIFATIT  152 (200)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR--~tg~~l~~~~~~i~~~~~p~i~-~---~~~~~~~~~~~~~~~~~  152 (200)
                      ...+......++..+..++.++++++|.-|.+-|  +.-+|+.+..-.+...+..+.. .   ....+....+.+.++..
T Consensus       381 ~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~  460 (477)
T TIGR01301       381 ASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAA  460 (477)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHH
Confidence            3445555566777788889999999999996655  5566666655555555544433 2   22223444566666677


Q ss_pred             HHHHHHHhh-cccCCC
Q psy10821        153 LMSGILSTF-LPETWN  167 (200)
Q Consensus       153 ~~~~i~~~~-lpet~~  167 (200)
                      +++++..++ +|+++.
T Consensus       461 ~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       461 FVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            777776655 687754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=91.20  E-value=0.61  Score=40.30  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=57.6

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhhh----hccc-cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH-----H--h
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKTY----YKTS-RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL-----R--N  113 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v-----R--~  113 (200)
                      ++...+.||+|||+....+.......    .... .+.++......+.+++.+..+...+.+.+|..+...     |  +
T Consensus       278 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g  357 (428)
T PF13347_consen  278 PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG  357 (428)
T ss_pred             HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence            44467789999997665433322211    1112 456666777777888888889999999999998542     3  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy10821        114 TGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus       114 tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      .-.|+.....+++..+++.+.
T Consensus       358 ~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  358 MYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHHHhhhhhhHHHHHHHHHHH
Confidence            444554555557777766655

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=91.08  E-value=0.84  Score=40.59  Aligned_cols=58  Identities=17%  Similarity=0.093  Sum_probs=45.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      +.+|++...++.+++.....++...+..+.-|.+.++.++|+-.....+++.++..+.
T Consensus       378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666777778888888888899999999999999999998866666666655554

>PRK11462 putative transporter; Provisional

Probab=90.96  E-value=0.62  Score=40.96  Aligned_cols=91  Identities=10%  Similarity=0.016  Sum_probs=46.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhH---h-hhhhhccccc-hHHHHHHHHHHHHHHhhhhhhHHHhhccccc-----hhHHh
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWV---Y-DKTYYKTSRT-MEYILYIVFFGKFCIAGSFAVIYNYSAELFP-----TVLRN  113 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~---~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~sElfP-----t~vR~  113 (200)
                      |.+++..+.||+|+|........   . .......... ........++.+++........+...+|.-.     +..|.
T Consensus       279 g~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~  358 (460)
T PRK11462        279 GSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL  358 (460)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc
Confidence            33456778899999866442111   1 1111111221 1122222233344444445555666666555     66787


Q ss_pred             HHHHHHH--HHHHHHHHHHHHHH
Q psy10821        114 TGLGVGS--MCARLSAALTPLIG  134 (200)
Q Consensus       114 tg~~l~~--~~~~i~~~~~p~i~  134 (200)
                      .|..++.  ...+++..+++.+.
T Consensus       359 ~g~~~a~~~f~~Klg~alg~~i~  381 (460)
T PRK11462        359 TGISFAGTLFVLKLGLAFGGALI  381 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            7775554  44557766666655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.63  E-value=2.3  Score=37.18  Aligned_cols=126  Identities=19%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             eeeecCCCCeeeEEEEEecc---c--chhHHHHHhHhhhh---hh-ccc---cchHHHHHHHHHHHHHHhhhhhhHHHhh
Q psy10821         36 TWIHKKDDGKFESCRMFDAF---T--NKTMTCHSWVYDKT---YY-KTS---RTMEYILYIVFFGKFCIAGSFAVIYNYS  103 (200)
Q Consensus        36 ~~~p~~~~G~~~~~~l~Dr~---G--Rr~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~  103 (200)
                      .++|..  -.++-+.+.|-+   |  ||+-+..++.....   .. ..+   .+........++..++.....-..=+..
T Consensus        34 ~~lPw~--~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~v  111 (433)
T PF03092_consen   34 ASLPWS--IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALV  111 (433)
T ss_pred             HhCchH--HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            445543  335557777764   3  44433333333311   11 111   1223334444455566666666666677


Q ss_pred             cccc---chhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc-cc
Q psy10821        104 AELF---PTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL-PE  164 (200)
Q Consensus       104 sElf---Pt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l-pe  164 (200)
                      +|.-   |.+ |+.-.+..+..-.+|+.++..+.  ..+..+....+.+.+.+..+..+..+++ +|
T Consensus       112 vE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  112 VELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            7754   555 78888888887778888887776  4566667777777777766666555554 54

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.33  E-value=1.3  Score=33.39  Aligned_cols=87  Identities=9%  Similarity=-0.115  Sum_probs=60.3

Q ss_pred             EEEEEecccchhHHHHH-hHhhhhhhc-cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHH
Q psy10821         48 SCRMFDAFTNKTMTCHS-WVYDKTYYK-TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARL  125 (200)
Q Consensus        48 ~~~l~Dr~GRr~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i  125 (200)
                      +..+++++|.|..+..+ ..+...... ...+.+.+.....+.++..+..|.....|+.|.-..+.|++-.++...+...
T Consensus        57 ~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~  136 (156)
T PF05978_consen   57 APSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQS  136 (156)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHH
Confidence            34567899999776643 333322111 2333445566677788888999999999999999999999998888777665


Q ss_pred             HHHHHHHHH
Q psy10821        126 SAALTPLIG  134 (200)
Q Consensus       126 ~~~~~p~i~  134 (200)
                      +.+.+..+.
T Consensus       137 s~i~G~~~~  145 (156)
T PF05978_consen  137 SLIFGNLFL  145 (156)
T ss_pred             HHHHHHHHH
Confidence            555555444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=90.15  E-value=3.9  Score=36.36  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHhhccccc-hhHHhHHHHHHHHHHHHHHHHHHHHH-----HHhh----cCchHHHHH
Q psy10821         78 MEYILYIVFFGKFCIAGSFAVIYNYSAELFP-TVLRNTGLGVGSMCARLSAALTPLIG-----LMDS----FDKRIPTTI  147 (200)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~~~~~sElfP-t~vR~tg~~l~~~~~~i~~~~~p~i~-----~~~~----~~~~~~~~~  147 (200)
                      ..+..+...+...+.+..+-+..++.+|+-+ .+.|.+-.+.-...+.+++.+...+.     ...+    .++.....+
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~  191 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALV  191 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence            4445555666667777777778888899766 67899999988888877766555444     2222    234444455


Q ss_pred             HHHHHHHHHHHHhh-cccC
Q psy10821        148 FATITLMSGILSTF-LPET  165 (200)
Q Consensus       148 ~~~~~~~~~i~~~~-lpet  165 (200)
                      ++++.++..+..++ .+|.
T Consensus       192 ~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         192 LGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            55555555444444 3443

>PRK09848 glucuronide transporter; Provisional

Probab=88.19  E-value=16  Score=31.57  Aligned_cols=46  Identities=13%  Similarity=0.066  Sum_probs=23.1

Q ss_pred             HHHHhhhhhhHHHhhccccc-hhHHhHHHHHHHHHHH-----HHHHHHHHHH
Q psy10821         89 KFCIAGSFAVIYNYSAELFP-TVLRNTGLGVGSMCAR-----LSAALTPLIG  134 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~sElfP-t~vR~tg~~l~~~~~~-----i~~~~~p~i~  134 (200)
                      ..+.+....+......|+-+ .+.|.+..++-...+.     ++..++|.+.
T Consensus       120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~  171 (448)
T PRK09848        120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK  171 (448)
T ss_pred             HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555666554 4668776555442222     3444455554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=86.92  E-value=8  Score=35.94  Aligned_cols=77  Identities=9%  Similarity=0.111  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhhhhhHHHhhccccch---hHHhHHHHHHHHHHHHHHHHHHHHH-HHh-hc-------CchHHHHHHHHH
Q psy10821         84 IVFFGKFCIAGSFAVIYNYSAELFPT---VLRNTGLGVGSMCARLSAALTPLIG-LMD-SF-------DKRIPTTIFATI  151 (200)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~~sElfPt---~vR~tg~~l~~~~~~i~~~~~p~i~-~~~-~~-------~~~~~~~~~~~~  151 (200)
                      ...++..+.++.-+...+...|.|+.   +.|.+...+.|...++|+.+++.+. ... ..       ++...+.+.++.
T Consensus        91 gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~  170 (654)
T TIGR00926        91 GLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL  170 (654)
T ss_pred             HHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence            34444555666667778888999974   3588999999999999999888887 332 22       355666666666


Q ss_pred             HHHHHHHHh
Q psy10821        152 TLMSGILST  160 (200)
Q Consensus       152 ~~~~~i~~~  160 (200)
                      .+++.++..
T Consensus       171 m~ia~lvf~  179 (654)
T TIGR00926       171 MILALIVFM  179 (654)
T ss_pred             HHHHHHHHH
Confidence            666655443

>KOG2533|consensus

Probab=84.75  E-value=0.52  Score=42.17  Aligned_cols=116  Identities=6%  Similarity=-0.008  Sum_probs=65.6

Q ss_pred             cceeeeeecCCC---CeeeEEEEEec----ccchhHHHHH-hHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHH
Q psy10821         32 TEVLTWIHKKDD---GKFESCRMFDA----FTNKTMTCHS-WVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIY  100 (200)
Q Consensus        32 ~~~~~~~p~~~~---G~~~~~~l~Dr----~GRr~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  100 (200)
                      +..+.++|.+.-   |.++++.+.||    ..+|...... .++....   ..............+.+............
T Consensus       310 ~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (495)
T KOG2533|consen  310 QANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIAL  389 (495)
T ss_pred             HhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHH
Confidence            345667776533   45678999999    5555433322 1222111   11122223333333334444455566667


Q ss_pred             HhhccccchhHHhHHHHHHHHHHH-HHHHHHHHHHH---HhhcCchHHHHH
Q psy10821        101 NYSAELFPTVLRNTGLGVGSMCAR-LSAALTPLIGL---MDSFDKRIPTTI  147 (200)
Q Consensus       101 ~~~sElfPt~vR~tg~~l~~~~~~-i~~~~~p~i~~---~~~~~~~~~~~~  147 (200)
                      ...++....+.|.......+..+. .++.++|.+..   ..++.+...+..
T Consensus       390 ~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  390 SWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             hhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence            778888888888777777777766 78888888873   233566666533

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=82.93  E-value=6.3  Score=35.06  Aligned_cols=86  Identities=17%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             EEEEecccchhHHHHHhHhhhh----hhcc-ccchHHHHHHHHHHHHHHhhhhhhHHHhhcccc-----chhHHhHHHHH
Q psy10821         49 CRMFDAFTNKTMTCHSWVYDKT----YYKT-SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELF-----PTVLRNTGLGV  118 (200)
Q Consensus        49 ~~l~Dr~GRr~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElf-----Pt~vR~tg~~l  118 (200)
                      -.+.+|+|+|.....+.+....    .+.. ..+....++..++..+..+..++.+|+.++|.-     -|.+|..|...
T Consensus       293 p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~  372 (467)
T COG2211         293 PRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY  372 (467)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence            3455778998766533222211    1112 233444555557777888889999999999874     57888777766


Q ss_pred             HHHHH--HHHHHHHHHHH
Q psy10821        119 GSMCA--RLSAALTPLIG  134 (200)
Q Consensus       119 ~~~~~--~i~~~~~p~i~  134 (200)
                      +.+..  .++..++..+.
T Consensus       373 s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         373 SGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            65443  35555544443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=81.74  E-value=12  Score=31.79  Aligned_cols=82  Identities=11%  Similarity=0.005  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccccchh---HHhHHHHHHHHHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHH
Q psy10821         80 YILYIVFFGKFCIAGSFAVIYNYSAELFPTV---LRNTGLGVGSMCARLSAALTPLIG-L-MDSFDKRIPTTIFATITLM  154 (200)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~---vR~tg~~l~~~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~  154 (200)
                      .+.....+..++.++.=+....+.+|.|+.+   .|.++..+.|...++|+.+++... . .++.++...|.+.++..++
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~  114 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL  114 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence            3444455566777788888899999999977   467788888888899999988887 3 4567788888887777777


Q ss_pred             HHHHHhh
Q psy10821        155 SGILSTF  161 (200)
Q Consensus       155 ~~i~~~~  161 (200)
                      +.+..+.
T Consensus       115 ~~~~f~~  121 (372)
T PF00854_consen  115 ALIVFLS  121 (372)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            7665554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=81.33  E-value=11  Score=33.01  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             HHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH--HHhhcC--------chHHHHHHHHHHHHHHHHH
Q psy10821         90 FCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFD--------KRIPTTIFATITLMSGILS  159 (200)
Q Consensus        90 ~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~--~~~~~~--------~~~~~~~~~~~~~~~~i~~  159 (200)
                      +.....+-+.....+|+-|...-++..++...+.+++..++..+.  +.+..+        .+...++..++.++.....
T Consensus       330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll  409 (433)
T PF03092_consen  330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL  409 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            333444455668899999999999999999999988877776666  222111        2333444555555566666


Q ss_pred             hhcccCCC
Q psy10821        160 TFLPETWN  167 (200)
Q Consensus       160 ~~lpet~~  167 (200)
                      .++|+.++
T Consensus       410 ~lLp~~~~  417 (433)
T PF03092_consen  410 FLLPPQKR  417 (433)
T ss_pred             HHcCCCch
Confidence            67777544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.57
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.03
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.92
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.78
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.73
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.69
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.52
2xut_A	524	Proton/peptide symporter family protein; transport	98.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.31
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.18
2xut_A	524	Proton/peptide symporter family protein; transport	97.67
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.04

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.57  E-value=1.9e-15  Score=130.10  Aligned_cols=132  Identities=14%  Similarity=0.158  Sum_probs=90.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh------hccccchHH--HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY------YKTSRTMEY--ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG  115 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg  115 (200)
                      +.++++.++||+|||+.+..+.......      ........+  .+...+....+..+..++.+.+.+|+||+++|+++
T Consensus       328 ~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~  407 (491)
T 4gc0_A          328 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA  407 (491)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHH
T ss_pred             HHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHH
Confidence            4456678899999997665332211111      011111222  22233333444556667889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-H-------hhcCchHHHHHHHHHHHHHHHHH-hhcccCCCCCchHHHH
Q psy10821        116 LGVGSMCARLSAALTPLIGL-M-------DSFDKRIPTTIFATITLMSGILS-TFLPETWNMVCDRRWM  175 (200)
Q Consensus       116 ~~l~~~~~~i~~~~~p~i~~-~-------~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~~~l~~~~~  175 (200)
                      .|++..++++++.+.+++.. +       ...+....+++++++++++.+.. +++||||||++||.++
T Consensus       408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~  476 (491)
T 4gc0_A          408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA  476 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence            99999999999998888762 2       23455667788888888877665 5579999999998654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.03  E-value=2.3e-10  Score=96.59  Aligned_cols=124  Identities=11%  Similarity=0.125  Sum_probs=90.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhh---hhh---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYY---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      +.+..+.+.||+|||+.+..+.....   ...   ....+.+.+....++.+++.+...+....+++|.+|.+.|++..+
T Consensus        77 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  156 (438)
T 3o7q_A           77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLN  156 (438)
T ss_dssp             THHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred             HHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHH
Confidence            55667889999999987664433222   222   234556667777888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-H-H-hhcC-------------------------chHHHHHHHHHHHHHHHHHhh--cccCCC
Q psy10821        118 VGSMCARLSAALTPLIG-L-M-DSFD-------------------------KRIPTTIFATITLMSGILSTF--LPETWN  167 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~-~-~-~~~~-------------------------~~~~~~~~~~~~~~~~i~~~~--lpet~~  167 (200)
                      +......++..++|.+. . . ...+                         |+.++++.++..++..+..++  .||++.
T Consensus       157 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          157 LAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            99999999999999988 3 3 3333                         566776666666655544443  466544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.92  E-value=1.1e-10  Score=96.92  Aligned_cols=124  Identities=12%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS  120 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~  120 (200)
                      +.+..+.+.||+|||+.+..+......   ......+.+......++.+++.+...+....+.+|.+|.+.|++..++..
T Consensus        51 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (375)
T 2gfp_A           51 SQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLN  130 (375)
T ss_dssp             HHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHH
Confidence            445668899999999766543322211   11123345556666777778888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHH-HHhhcccCCC
Q psy10821        121 MCARLSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGI-LSTFLPETWN  167 (200)
Q Consensus       121 ~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet~~  167 (200)
                      ....++..++|.+. . .+..+|+..+.+.++..++..+ ....+||++.
T Consensus       131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            98889999999998 3 4456788888888777777666 3445677643

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.84  E-value=2.2e-09  Score=91.97  Aligned_cols=123  Identities=13%  Similarity=0.008  Sum_probs=86.2

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---h------------------ccccchHHHHHHHHHHHHHHhhhhhhHHHh
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---Y------------------KTSRTMEYILYIVFFGKFCIAGSFAVIYNY  102 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  102 (200)
                      |.++.+.+.||+|||+.+..+.......   .                  ....+...+++.+++.+++.++..+..+.+
T Consensus        71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~  150 (491)
T 4gc0_A           71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMY  150 (491)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788999999997765432211111   0                  023456677888999999999999999999


Q ss_pred             hccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-H-h--------hcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821        103 SAELFPTVLRNTGLGVGSMCARLSAALTPLIGL-M-D--------SFDKRIPTTIFATITLMSGILSTFLPETW  166 (200)
Q Consensus       103 ~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~~-~-~--------~~~~~~~~~~~~~~~~~~~i~~~~lpet~  166 (200)
                      ++|..|++.|++..++......++...++.+.. . .        ...|+..+....+..++..+..++.||+.
T Consensus       151 i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp  224 (491)
T 4gc0_A          151 IAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP  224 (491)
T ss_dssp             HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred             HHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence            999999999999999988777777776666652 1 1        11234445555555566666667789874

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.78  E-value=2.7e-09  Score=90.15  Aligned_cols=123  Identities=10%  Similarity=0.120  Sum_probs=92.5

Q ss_pred             eeeEEEEEecccchhHHHHHhHhh---hhhhcc----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYD---KTYYKT----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      .+..+.+.||+|||+.+..+....   ......    ..+.+.+....++.+++.+...+....+++|.+|.+.|+++.+
T Consensus        79 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  158 (451)
T 1pw4_A           79 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS  158 (451)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred             HHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHH
Confidence            345678899999997765433322   112222    3455566777888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy10821        118 VGSMCARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILS-TFLPETWN  167 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~-~~lpet~~  167 (200)
                      +......++..++|.+.  +....+ |+..+++.++++++..+.. +++||++.
T Consensus       159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            99988889999999988  366677 8998988888877765544 45676543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.73  E-value=3.2e-09  Score=90.03  Aligned_cols=126  Identities=10%  Similarity=0.049  Sum_probs=80.9

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH-
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM-  121 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~-  121 (200)
                      +..+.+.||+|||+.+..+......   ......+........++..+.........+.+.+|.+|++.|+++.++.++ 
T Consensus       277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  356 (417)
T 2cfq_A          277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF  356 (417)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            3456778999999766543322221   111122333333333333344444455668899999999999999999754 


Q ss_pred             HHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCCCCCch
Q psy10821        122 CARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETWNMVCD  171 (200)
Q Consensus       122 ~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~~l~  171 (200)
                      ...+++.++|.+.  +.+..+....+.+.+++++++.+..+. .||++..++-
T Consensus       357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~  409 (417)
T 2cfq_A          357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL  409 (417)
T ss_dssp             THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCSS
T ss_pred             HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHHH
Confidence            4458999999988  355556666777777777777666544 5887766654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.69  E-value=2.5e-08  Score=85.56  Aligned_cols=118  Identities=10%  Similarity=0.016  Sum_probs=87.6

Q ss_pred             CeeeEEEEEec-ccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH--HhHHHH
Q psy10821         44 GKFESCRMFDA-FTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL--RNTGLG  117 (200)
Q Consensus        44 G~~~~~~l~Dr-~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v--R~tg~~  117 (200)
                      +.+..+.+.|| +|||+.+..+.....   .......+.+.+....++.+++.+...+....+++|.+|.+.  |+++.+
T Consensus        70 ~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  149 (491)
T 4aps_A           70 SGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS  149 (491)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeeh
Confidence            44667889999 899987764433222   222234556667777778888888889999999999999988  666777


Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        118 VGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      +.+....++..++|.+.  +.+..+|+..+++.++..+++.+..++
T Consensus       150 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          150 IFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77788889999999988  356688888888877777666655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.52  E-value=4.7e-08  Score=82.50  Aligned_cols=118  Identities=17%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             eeEEEEEecc--cchhHHHHHhHh----hhhhhccc--cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         46 FESCRMFDAF--TNKTMTCHSWVY----DKTYYKTS--RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        46 ~~~~~l~Dr~--GRr~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      ++.+.+.||+  |||.....+...    ........  .+........++.+++....++....+..|.+|++.|+++.|
T Consensus       306 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  385 (451)
T 1pw4_A          306 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG  385 (451)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence            3446788999  998665432221    11111112  233344445555566667777788899999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcc
Q psy10821        118 VGSMCARL-SAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLP  163 (200)
Q Consensus       118 l~~~~~~i-~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lp  163 (200)
                      +......+ ++.++|.+.  +.+..++...+++.+++.+++.++.++.+
T Consensus       386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998 999999998  45667888888888888888777666553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.51  E-value=1.7e-07  Score=81.04  Aligned_cols=118  Identities=8%  Similarity=0.059  Sum_probs=85.4

Q ss_pred             CeeeEEEEEecc-cchhHHHHHhHhhh---hhhcccc-chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821         44 GKFESCRMFDAF-TNKTMTCHSWVYDK---TYYKTSR-TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV  118 (200)
Q Consensus        44 G~~~~~~l~Dr~-GRr~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l  118 (200)
                      +.+..+.+.||+ |||+.+..+.....   ....... +.+.+....++.+++.+...+....+.+|.+|.+.|++..+.
T Consensus        70 ~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A           70 FPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             THHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence            556678899999 99977654333222   1112233 555666667777788888889999999999999999776665


Q ss_pred             ---HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        119 ---GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       119 ---~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                         .+....++..++|.+.  +.+..+|...+.+.++..+++.+..++
T Consensus       150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          150 FDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence               7777778999999887  355678888888877777666655544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.31  E-value=1e-06  Score=75.40  Aligned_cols=92  Identities=12%  Similarity=0.089  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHH
Q psy10821         77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMS  155 (200)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~  155 (200)
                      +..+.....++.+++.....+..+.+..|.+|++.|+++.|+......+++.++|.+. ...+.+....+..++++++++
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL  464 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            3444555555666666777788899999999999999999999999999999999998 455666667777777777776


Q ss_pred             HHHHhhc-ccCCCC
Q psy10821        156 GILSTFL-PETWNM  168 (200)
Q Consensus       156 ~i~~~~l-pet~~~  168 (200)
                      .+..++. |+.+++
T Consensus       465 ~~~~~~~~~~~~~~  478 (491)
T 4aps_A          465 GIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHHHHHHHHH
Confidence            6655554 665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.18  E-value=2.1e-06  Score=72.02  Aligned_cols=115  Identities=9%  Similarity=0.039  Sum_probs=74.6

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM  121 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~  121 (200)
                      .++.+.+.||+|||+.+..+.......   .....+. +.....++.+++.+..++..+.+..|.+|++ |+++.++.. 
T Consensus       312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  388 (438)
T 3o7q_A          312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-  388 (438)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence            345577889999997765433322221   1112222 3333345556777778888999999999988 999988877 


Q ss_pred             HHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHHhhc
Q psy10821        122 CARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       122 ~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      .+.+++.++|.+.  +.+..+ ....+.+.++..++..+..+..
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR  432 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            6779999999998  456666 6666666555444444433333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.67  E-value=8.8e-05  Score=63.87  Aligned_cols=97  Identities=10%  Similarity=0.071  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-HHhh-----------cCc-hH
Q psy10821         77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-LMDS-----------FDK-RI  143 (200)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~~~~-----------~~~-~~  143 (200)
                      +..+.+...++.+++.....+....+..|..|++.|+++.|+......+++.++|.+. ...+           .+. ..
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  483 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAF  483 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            3444555566667777778888899999999999999999999999999999999998 3222           111 22


Q ss_pred             HHHHHHHHHHHHHHHHhh-cccCCCCCchHH
Q psy10821        144 PTTIFATITLMSGILSTF-LPETWNMVCDRR  173 (200)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~-lpet~~~~l~~~  173 (200)
                      .+.+.+++++++.+..++ .+++++++.++.
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (524)
T 2xut_A          484 QMFFFAGFAILAAIVFALYARSYQMQDHYRQ  514 (524)
T ss_dssp             HHHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence            255566666666555444 477666554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.04  E-value=4e-05  Score=64.58  Aligned_cols=122  Identities=12%  Similarity=-0.022  Sum_probs=58.0

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHH----HHHHHHHHHHHHhhhhhhHHHhhccccch--hHHhH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEY----ILYIVFFGKFCIAGSFAVIYNYSAELFPT--VLRNT  114 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~sElfPt--~vR~t  114 (200)
                      +.+..+.+.||+|||+.+..+.......   .........    ......+.....+..++.......+..+.  +.|+.
T Consensus        59 ~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  138 (417)
T 2cfq_A           59 FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNF  138 (417)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhccc
Confidence            4466789999999998766433322110   000000000    01111111111112222222333333333  33455


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhc-ccC
Q psy10821        115 GLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFL-PET  165 (200)
Q Consensus       115 g~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l-pet  165 (200)
                      ..+.....+.++..++|.+. ...+.+++..+++.++..++..+..++. ||+
T Consensus       139 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          139 EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             CHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            55666556668888888887 3444577777766555544444444444 443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.04  E-value=0.0029  Score=51.80  Aligned_cols=52  Identities=15%  Similarity=0.092  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821         82 LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG  134 (200)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~  134 (200)
                      ....++.+++.+..++....+..|.+| +.|+++.++......+++.++|.+.
T Consensus       295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~  346 (375)
T 2gfp_A          295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS  346 (375)
T ss_dssp             HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence            344455566677778888999999999 8999999999999989998888877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.84
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.58
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.57

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=2.7e-10  Score=93.66  Aligned_cols=117  Identities=10%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             eeeEEEEEecccchhHHHHHhHhhhhhhc-------cccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821         45 KFESCRMFDAFTNKTMTCHSWVYDKTYYK-------TSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG  117 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~  117 (200)
                      .+..+.+.||+|||+++..+.........       ...+........++.+++.+..++....+++|.+|.+.|++..+
T Consensus        76 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~  155 (447)
T d1pw4a_          76 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS  155 (447)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccc
Confidence            45568899999999876644332221111       12344566777777788888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-H-Hh-hcCchHHHHHHHHHHHHHHHHHhh
Q psy10821        118 VGSMCARLSAALTPLIG-L-MD-SFDKRIPTTIFATITLMSGILSTF  161 (200)
Q Consensus       118 l~~~~~~i~~~~~p~i~-~-~~-~~~~~~~~~~~~~~~~~~~i~~~~  161 (200)
                      +......+++.++|.+. . .. ..+|+..+++.+.+.++..+..++
T Consensus       156 ~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         156 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence            99998889988888776 2 33 346777777777766665554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.4e-08  Score=81.23  Aligned_cols=132  Identities=11%  Similarity=0.058  Sum_probs=94.3

Q ss_pred             eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHH
Q psy10821         46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC  122 (200)
Q Consensus        46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~  122 (200)
                      .....+.||+|||+....+......   ......+.+......++.+++.+...+....+..|.+|++.|+++.++.+++
T Consensus       277 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (417)
T d1pv7a_         277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF  356 (417)
T ss_dssp             TTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTT
T ss_pred             hhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHH
Confidence            3445677999998766544332222   2223445555566666667777888889999999999999999999998877


Q ss_pred             HH-HHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCCCCCchHHHHHH
Q psy10821        123 AR-LSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETWNMVCDRRWMLA  177 (200)
Q Consensus       123 ~~-i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~~l~~~~~~~  177 (200)
                      .. +++.++|.+.  +.+..+....+++.++++++..+...+ +++.+..++++.+.++
T Consensus       357 ~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~e  415 (417)
T d1pv7a_         357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNE  415 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHhhhcc
Confidence            65 8888999887  467788888888888887776665544 5766666665554444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=2.2e-08  Score=81.87  Aligned_cols=118  Identities=15%  Similarity=0.085  Sum_probs=78.3

Q ss_pred             eeeEEEEEecccchhHHH-----HHh-Hhhhhhhcc--ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHH
Q psy10821         45 KFESCRMFDAFTNKTMTC-----HSW-VYDKTYYKT--SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGL  116 (200)
Q Consensus        45 ~~~~~~l~Dr~GRr~~~~-----~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~  116 (200)
                      .++.+.+.||++||....     ... .........  ..+........++.++...+.....+.+.+|.+|++.|+++.
T Consensus       302 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  381 (447)
T d1pw4a_         302 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA  381 (447)
T ss_dssp             HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             hhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            345567889999873221     111 111111111  223334444455556667777888899999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhc
Q psy10821        117 GVGSMCARLS-AALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFL  162 (200)
Q Consensus       117 ~l~~~~~~i~-~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l  162 (200)
                      |+.+..+.++ ...+|.+.  ..+..++...+.+.++.++++.++...+
T Consensus       382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998874 55678777  4677888888888777777766655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.1e-05  Score=63.70  Aligned_cols=123  Identities=11%  Similarity=-0.076  Sum_probs=58.1

Q ss_pred             CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHH----HHHHHHHHHHHhhhhhhHHHhhccccch--hHHhH
Q psy10821         44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYI----LYIVFFGKFCIAGSFAVIYNYSAELFPT--VLRNT  114 (200)
Q Consensus        44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~sElfPt--~vR~t  114 (200)
                      +.+..+.+.||+|||+.+..+......   ...........    .......................+..+.  +.|..
T Consensus        59 ~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (417)
T d1pv7a_          59 FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNF  138 (417)
T ss_dssp             THHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHH
Confidence            556778999999999776543222111   11111111111    1111111122222222222222222332  23344


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHH-HHhhcccCC
Q psy10821        115 GLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGI-LSTFLPETW  166 (200)
Q Consensus       115 g~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet~  166 (200)
                      ..+........+..++|.+. .....++...+........+..+ ..+..||.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         139 EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             HHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccc
Confidence            55555555556777777777 45666666666665555554444 444455543