Psyllid ID: psy10837

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MEKKSFEFIGRRDKFQDQSSFVSTAPPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEcccccHHHHcccccccccEEEEEEEEEEEEEEEEEEccccEEEEEEEEccccEEEEEccccEEEEEccccccccccccEEEEEEEcccccccccccEEcccccccccccHHHHHHHHHHHHHHcccccccccEEcccccHHHccccccccccEEEEEcccccccccHHHHHHHHHccEEEccccccccccEEEEEccccccccc
cccEEEEEcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHHHHHcccccccccccccccEEEEEEccccccHHHHccccEEcccEEEEEEEEcHHHEEEEEEccccEEEEEcEEEccEEEccEEcccEEEEccccccccHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEcccEEEccHHHHHccHccccccEEEEEccccccccEHHHHHHHHHcccEEEEEcccEEEEEEEEEEccEEEEEc
mekksfefigrrdkfqdqssfvstapplpartaggppssgdlslnlskqssrttsaptspakTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYnkdrcfsllviddqntdwskyfrgrrlhgdydVRVEQAEFkelsltangdlgcVVSMAvfrggtkvvrsfkpDMILIRQNLRDAGEDHKNLLLgfniggipsintlqgvynfqvpklvldkpwVFAHLLQLQRKlgkenfplidityypnFKEMVSkmtapkypvVFKIghahsgfgkDMAGVVAVANTycttepyidskfDVHVQKIGSNYKAFQ
mekksfefigrrdkfqdqssfvstapplpartaggppSSGDLSLNLSkqssrttsaptspaktreSLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLlviddqntdwsKYFRGRRLHGDYDVRVEQAEFKelsltangdlgCVVSMAVFRggtkvvrsfkpdMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQrklgkenfplIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ
MEKKSFEFIGRRDKFQDQSSFVSTAPPLPARTAGGPPSSGDLSLNLSKQssrttsaptspaktrESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ
***********************************************************************************************ARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG*******
***********************************************************************************************************LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRG*****RSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS*Y****
********IGRRDKFQDQSSFVSTAPPLPA************************************LLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ
***K*FEFIGRRDK***************************************************************************************KDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ
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MEKKSFEFIGRRDKFQDQSSFVSTAPPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q24546 1025 Synapsin OS=Drosophila me yes N/A 0.806 0.248 0.568 1e-91
O88935 706 Synapsin-1 OS=Mus musculu yes N/A 0.629 0.281 0.536 3e-65
P17599 706 Synapsin-1 OS=Bos taurus yes N/A 0.629 0.281 0.536 3e-65
P17600 705 Synapsin-1 OS=Homo sapien yes N/A 0.629 0.282 0.536 3e-65
P09951 704 Synapsin-1 OS=Rattus norv yes N/A 0.629 0.282 0.536 6e-65
Q8JZP2 579 Synapsin-3 OS=Mus musculu no N/A 0.696 0.379 0.489 4e-64
O70441 579 Synapsin-3 OS=Rattus norv no N/A 0.629 0.343 0.522 5e-64
Q92777 582 Synapsin-2 OS=Homo sapien no N/A 0.629 0.341 0.536 5e-64
Q63537 586 Synapsin-2 OS=Rattus norv no N/A 0.715 0.385 0.494 7e-64
Q64332 586 Synapsin-2 OS=Mus musculu no N/A 0.715 0.385 0.494 8e-64
>sp|Q24546|SYN_DROME Synapsin OS=Drosophila melanogaster GN=Syn PE=1 SV=2 Back     alignment and function desciption
 Score =  337 bits (863), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 158/278 (56%), Positives = 208/278 (74%), Gaps = 23/278 (8%)

Query: 52  RTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVI 111
           R  SAPTSPAK+RESLLQRVQSLTG ARDQGASI+GA  Q+A+    +++KD+ F+LLV+
Sbjct: 80  RGVSAPTSPAKSRESLLQRVQSLTGAARDQGASILGAAVQSATQRAPAFSKDKYFTLLVL 139

Query: 112 DDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFK 171
           DDQNTDWSKYFRGRRLHGD+D+RVEQAEF+++++ ++ D G VV+MA +R GT+V RSF+
Sbjct: 140 DDQNTDWSKYFRGRRLHGDFDIRVEQAEFRDITVVSSADTGPVVTMAAYRSGTRVARSFR 199

Query: 172 PDMILIRQNLRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQL 231
           PD +LIRQ  RD   D+++ +LG   GG+PSIN+L  +Y FQ      DKPWVF+HLLQL
Sbjct: 200 PDFVLIRQPPRDGSSDYRSTILGLKYGGVPSINSLHSIYQFQ------DKPWVFSHLLQL 253

Query: 232 QRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFG----------KDMA 281
           QR+LG++ FPLI+ T++PN +++  + T  K+P V K GH H G            +D A
Sbjct: 254 QRRLGRDGFPLIEQTFFPNPRDLF-QFT--KFPSVLKAGHCHGGVATARLENQSALQDAA 310

Query: 282 GVVAVA----NTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
           G+V+ A    + YCT EPYID+KF VH+QKIG+NYKAF
Sbjct: 311 GLVSGAGNDSHCYCTIEPYIDAKFSVHIQKIGNNYKAF 348
Plays a significant role in nervous system function, which is subtle at the cellular level but manifests itself in complex behavior.
Drosophila melanogaster (taxid: 7227)
>sp|O88935|SYN1_MOUSE Synapsin-1 OS=Mus musculus GN=Syn1 PE=1 SV=2 Back     alignment and function description
>sp|P17599|SYN1_BOVIN Synapsin-1 OS=Bos taurus GN=SYN1 PE=1 SV=2 Back     alignment and function description
>sp|P17600|SYN1_HUMAN Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3 Back     alignment and function description
>sp|P09951|SYN1_RAT Synapsin-1 OS=Rattus norvegicus GN=Syn1 PE=1 SV=3 Back     alignment and function description
>sp|Q8JZP2|SYN3_MOUSE Synapsin-3 OS=Mus musculus GN=Syn3 PE=1 SV=2 Back     alignment and function description
>sp|O70441|SYN3_RAT Synapsin-3 OS=Rattus norvegicus GN=Syn3 PE=1 SV=1 Back     alignment and function description
>sp|Q92777|SYN2_HUMAN Synapsin-2 OS=Homo sapiens GN=SYN2 PE=1 SV=3 Back     alignment and function description
>sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus GN=Syn2 PE=1 SV=1 Back     alignment and function description
>sp|Q64332|SYN2_MOUSE Synapsin-2 OS=Mus musculus GN=Syn2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
350416608 745 PREDICTED: synapsin-like [Bombus impatie 0.914 0.387 0.669 1e-112
383851597 633 PREDICTED: synapsin-like [Megachile rotu 0.844 0.421 0.705 1e-111
380029120 622 PREDICTED: synapsin-like [Apis florea] 0.832 0.422 0.705 1e-110
242016069 541 synapsin, putative [Pediculus humanus co 0.870 0.508 0.625 1e-110
328781845 549 PREDICTED: synapsin [Apis mellifera] 0.832 0.479 0.698 1e-108
357616643 692 hypothetical protein KGM_17479 [Danaus p 0.886 0.404 0.631 1e-107
270015670 569 hypothetical protein TcasGA2_TC002264 [T 0.832 0.462 0.664 1e-104
189241862 560 PREDICTED: similar to Synapsin CG3985-PE 0.832 0.469 0.664 1e-104
321474065 511 hypothetical protein DAPPUDRAFT_314472 [ 0.838 0.518 0.631 1e-102
195388766 1022 GJ23545 [Drosophila virilis] gi|19415113 0.806 0.249 0.571 1e-90
>gi|350416608|ref|XP_003491015.1| PREDICTED: synapsin-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/315 (66%), Positives = 244/315 (77%), Gaps = 26/315 (8%)

Query: 15  FQDQSSFVSTA--PPLPARTAGGPPS--SGDLSLNLSKQSSRTTSAPTSPAKTRESLLQR 70
            Q Q + V  A  PP+P     GPP    GDLSLNL +  SRTTSAP+SPAKTRESLLQR
Sbjct: 215 LQSQPTPVPPANQPPVPGAPPSGPPQPVGGDLSLNL-RPGSRTTSAPSSPAKTRESLLQR 273

Query: 71  VQSLTGQARDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGD 130
           VQSLTG ARDQGASI+GA   + +    SYNKDRCF+LLVIDDQNTDWSKYFRGRRLHGD
Sbjct: 274 VQSLTGAARDQGASILGAAV-SGTTRGPSYNKDRCFTLLVIDDQNTDWSKYFRGRRLHGD 332

Query: 131 YDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKN 190
           Y++RVEQAEF+ELSLTA+ + G +VSMAV+R GTKV+RSFKPD +LIRQNL+DAGED+KN
Sbjct: 333 YEIRVEQAEFRELSLTAS-ETGTIVSMAVYRNGTKVIRSFKPDFVLIRQNLKDAGEDNKN 391

Query: 191 LLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPN 250
           LLLG   GG+PSIN L  +YNFQ      DKPWVFAHLL LQR+LGK+NFPLI+ TYYPN
Sbjct: 392 LLLGLMYGGVPSINNLTAIYNFQ------DKPWVFAHLLGLQRRLGKDNFPLIEQTYYPN 445

Query: 251 FKEMVSKMTAPKYPVVFKIGHAHSGFGKDMAGV----------VAVANTYCTTEPYIDSK 300
            +EMVS   A +YPVV K+GHAH G GK  A             A+ANTYCT+EPY+D+K
Sbjct: 446 HREMVS---ASRYPVVVKLGHAHGGVGKARAETNQEFLDLASLAALANTYCTSEPYVDTK 502

Query: 301 FDVHVQKIGSNYKAF 315
           +DVHVQKIG+NYKAF
Sbjct: 503 YDVHVQKIGNNYKAF 517

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383851597|ref|XP_003701318.1| PREDICTED: synapsin-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380029120|ref|XP_003698230.1| PREDICTED: synapsin-like [Apis florea] Back     alignment and taxonomy information
>gi|242016069|ref|XP_002428658.1| synapsin, putative [Pediculus humanus corporis] gi|212513329|gb|EEB15920.1| synapsin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328781845|ref|XP_624128.2| PREDICTED: synapsin [Apis mellifera] Back     alignment and taxonomy information
>gi|357616643|gb|EHJ70300.1| hypothetical protein KGM_17479 [Danaus plexippus] Back     alignment and taxonomy information
>gi|270015670|gb|EFA12118.1| hypothetical protein TcasGA2_TC002264 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189241862|ref|XP_971243.2| PREDICTED: similar to Synapsin CG3985-PE [Tribolium castaneum] Back     alignment and taxonomy information
>gi|321474065|gb|EFX85031.1| hypothetical protein DAPPUDRAFT_314472 [Daphnia pulex] Back     alignment and taxonomy information
>gi|195388766|ref|XP_002053050.1| GJ23545 [Drosophila virilis] gi|194151136|gb|EDW66570.1| GJ23545 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
FB|FBgn0004575 1025 Syn "Synapsin" [Drosophila mel 0.886 0.273 0.504 1.9e-76
RGD|3797 704 Syn1 "synapsin I" [Rattus norv 0.629 0.282 0.536 4.8e-60
UNIPROTKB|P09951 704 Syn1 "Synapsin-1" [Rattus norv 0.629 0.282 0.536 4.8e-60
UNIPROTKB|F5H7H8 514 SYN2 "Synapsin-2" [Homo sapien 0.731 0.449 0.501 1.5e-58
UNIPROTKB|Q92777 582 SYN2 "Synapsin-2" [Homo sapien 0.731 0.396 0.501 1.5e-58
UNIPROTKB|P17599 706 SYN1 "Synapsin-1" [Bos taurus 0.629 0.281 0.536 8.4e-58
UNIPROTKB|P17600 705 SYN1 "Synapsin-1" [Homo sapien 0.629 0.282 0.536 8.4e-58
ZFIN|ZDB-GENE-051127-49 695 syn2b "synapsin IIb" [Danio re 0.708 0.322 0.476 8.4e-58
UNIPROTKB|F1PQT9 668 SYN1 "Synapsin-1" [Canis lupus 0.629 0.297 0.531 1.7e-57
UNIPROTKB|B7TY10 712 SYN1 "Synapsin Ia" [Sus scrofa 0.629 0.279 0.531 1.7e-57
FB|FBgn0004575 Syn "Synapsin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 157/311 (50%), Positives = 206/311 (66%)

Query:    26 PPLPARTAGGPPSSGDLSLNLSKQXXXXX-------XXXXXXXXXXESLLQRVQSLTGQA 78
             PP P + AG  P    LS    K                       ESLLQRVQSLTG A
Sbjct:    48 PPAPGQPAGAAPELS-LSFGAGKTPATAAPAPPRGVSAPTSPAKSRESLLQRVQSLTGAA 106

Query:    79 RDQGASIIGAMTQTASAARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQA 138
             RDQGASI+GA  Q+A+    +++KD+ F+LLV+DDQNTDWSKYFRGRRLHGD+D+RVEQA
Sbjct:   107 RDQGASILGAAVQSATQRAPAFSKDKYFTLLVLDDQNTDWSKYFRGRRLHGDFDIRVEQA 166

Query:   139 EFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLRDAGEDHKNLLLGFNIG 198
             EF+++++ ++ D G VV+MA +R GT+V RSF+PD +LIRQ  RD   D+++ +LG   G
Sbjct:   167 EFRDITVVSSADTGPVVTMAAYRSGTRVARSFRPDFVLIRQPPRDGSSDYRSTILGLKYG 226

Query:   199 GIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKM 258
             G+PSIN+L  +Y FQ      DKPWVF+HLLQLQR+LG++ FPLI+ T++PN +++  + 
Sbjct:   227 GVPSINSLHSIYQFQ------DKPWVFSHLLQLQRRLGRDGFPLIEQTFFPNPRDLF-QF 279

Query:   259 TAPKYPVVFKIGHAHSGFG----------KDMAGVVAVANT----YCTTEPYIDSKFDVH 304
             T  K+P V K GH H G            +D AG+V+ A      YCT EPYID+KF VH
Sbjct:   280 T--KFPSVLKAGHCHGGVATARLENQSALQDAAGLVSGAGNDSHCYCTIEPYIDAKFSVH 337

Query:   305 VQKIGSNYKAF 315
             +QKIG+NYKAF
Sbjct:   338 IQKIGNNYKAF 348
GO:0043195 "terminal bouton" evidence=IDA
GO:0008021 "synaptic vesicle" evidence=ISS
GO:0007269 "neurotransmitter secretion" evidence=ISS
GO:0016079 "synaptic vesicle exocytosis" evidence=ISS
GO:0045202 "synapse" evidence=NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0007613 "memory" evidence=IMP
GO:0048149 "behavioral response to ethanol" evidence=IMP
GO:0009408 "response to heat" evidence=IMP
GO:0008355 "olfactory learning" evidence=IMP
GO:0008049 "male courtship behavior" evidence=IMP
GO:0071632 "optomotor response" evidence=IMP
GO:0008306 "associative learning" evidence=IMP
RGD|3797 Syn1 "synapsin I" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P09951 Syn1 "Synapsin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7H8 SYN2 "Synapsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q92777 SYN2 "Synapsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P17599 SYN1 "Synapsin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P17600 SYN1 "Synapsin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051127-49 syn2b "synapsin IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQT9 SYN1 "Synapsin-1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7TY10 SYN1 "Synapsin Ia" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q24546SYN_DROMENo assigned EC number0.56830.80690.2487yesN/A
O88935SYN1_MOUSENo assigned EC number0.53630.62970.2818yesN/A
P17599SYN1_BOVINNo assigned EC number0.53630.62970.2818yesN/A
P17600SYN1_HUMANNo assigned EC number0.53630.62970.2822yesN/A
P09951SYN1_RATNo assigned EC number0.53630.62970.2826yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
pfam02750203 pfam02750, Synapsin_C, Synapsin, ATP binding domai 3e-51
pfam02078105 pfam02078, Synapsin, Synapsin, N-terminal domain 1e-44
>gnl|CDD|111626 pfam02750, Synapsin_C, Synapsin, ATP binding domain Back     alignment and domain information 
 Score =  167 bits (425), Expect = 3e-51
 Identities = 71/122 (58%), Positives = 86/122 (70%), Gaps = 19/122 (15%)

Query: 204 NTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKY 263
           N+L  +YNF       DKPWVFA L+Q+Q+KLG E FPLI+ TYYPN KEM   +T P +
Sbjct: 1   NSLHSIYNFC------DKPWVFAQLIQIQKKLGAEKFPLIEQTYYPNHKEM---LTTPTF 51

Query: 264 PVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYK 313
           PVV KIGHAHSG GK          D+A VVA+  TY TTEP+IDSK+D+ VQKIG+NYK
Sbjct: 52  PVVVKIGHAHSGMGKVKVDNHHDFQDIASVVALTKTYATTEPFIDSKYDIRVQKIGNNYK 111

Query: 314 AF 315
           A+
Sbjct: 112 AY 113

Ca dependent ATP binding in this ATP grasp fold. Function unknown. Length = 203
>gnl|CDD|111020 pfam02078, Synapsin, Synapsin, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
KOG3895|consensus 488 100.0
PF02078105 Synapsin: Synapsin, N-terminal domain; InterPro: I 100.0
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 100.0
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 98.32
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 98.18
PRK10446300 ribosomal protein S6 modification protein; Provisi 98.04
PRK01372 304 ddl D-alanine--D-alanine ligase; Reviewed 97.59
PRK12458 338 glutathione synthetase; Provisional 97.47
TIGR01205 315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 97.43
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 97.33
PRK14570 364 D-alanyl-alanine synthetase A; Provisional 97.24
PRK01966 333 ddl D-alanyl-alanine synthetase A; Reviewed 97.19
PRK14571 299 D-alanyl-alanine synthetase A; Provisional 96.82
PRK14568 343 vanB D-alanine--D-lactate ligase; Provisional 96.53
PRK05246316 glutathione synthetase; Provisional 96.49
PLN02941 328 inositol-tetrakisphosphate 1-kinase 96.24
PRK14569 296 D-alanyl-alanine synthetase A; Provisional 95.8
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 95.69
TIGR01142 380 purT phosphoribosylglycinamide formyltransferase 2 95.47
PRK14572 347 D-alanyl-alanine synthetase A; Provisional 95.46
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 95.26
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 95.25
PRK07178 472 pyruvate carboxylase subunit A; Validated 95.0
TIGR00514 449 accC acetyl-CoA carboxylase, biotin carboxylase su 94.76
PF1058132 Synapsin_N: Synapsin N-terminal; InterPro: IPR0197 94.72
PRK08591 451 acetyl-CoA carboxylase biotin carboxylase subunit; 94.29
PRK09288 395 purT phosphoribosylglycinamide formyltransferase 2 94.19
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 94.02
PRK08654 499 pyruvate carboxylase subunit A; Validated 93.86
PRK12833 467 acetyl-CoA carboxylase biotin carboxylase subunit; 93.85
TIGR01161 352 purK phosphoribosylaminoimidazole carboxylase, Pur 93.81
PRK08462 445 biotin carboxylase; Validated 93.26
PLN02948 577 phosphoribosylaminoimidazole carboxylase 92.99
PRK02471 752 bifunctional glutamate--cysteine ligase/glutathion 92.9
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 92.79
PRK05586 447 biotin carboxylase; Validated 92.6
PRK13790 379 phosphoribosylamine--glycine ligase; Provisional 92.58
PRK12999 1146 pyruvate carboxylase; Reviewed 92.2
PRK14573 809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 92.15
PRK13789 426 phosphoribosylamine--glycine ligase; Provisional 92.03
PRK06111 450 acetyl-CoA carboxylase biotin carboxylase subunit; 91.88
PRK12767 326 carbamoyl phosphate synthase-like protein; Provisi 91.74
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 91.22
PRK02186 887 argininosuccinate lyase; Provisional 90.37
PRK00885 420 phosphoribosylamine--glycine ligase; Provisional 90.33
PRK06019 372 phosphoribosylaminoimidazole carboxylase ATPase su 89.99
PRK07206 416 hypothetical protein; Provisional 89.47
PLN02257 434 phosphoribosylamine--glycine ligase 88.85
PRK14016 727 cyanophycin synthetase; Provisional 88.84
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 88.73
TIGR01435 737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 88.37
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 88.24
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 88.23
TIGR03103 547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 88.05
TIGR00877 423 purD phosphoribosylamine--glycine ligase. This enz 88.03
COG0439 449 AccC Biotin carboxylase [Lipid metabolism] 83.73
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 83.54
>KOG3895|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-111  Score=813.04  Aligned_cols=266  Identities=51%  Similarity=0.916  Sum_probs=248.7

Q ss_pred             CCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCccccchhhhhhccccccccccccchhhhhhhh----cc------c
Q psy10837         25 APPLPARTAGGPPSSGDLSLNLSKQSSRTTSAPTSPAKTRESLLQRVQSLTGQARDQGASIIGAMTQ----TA------S   94 (316)
Q Consensus        25 ~~~lp~~~~~~~~~~~~~sl~l~~~~~~~tSaPtSPA~~r~s~~q~~~~~t~~~~~~gss~~ss~~~----ta------~   94 (316)
                      +||||||||          .|||| +..+.|+|+||+++|+++.     +..+.++.|+++|++.++    |+      .
T Consensus        14 manlpngym----------tdlqr-p~~~~Sspasp~~e~~~pa-----~~~~~~s~gs~~fssls~a~kqt~Aa~~~~~   77 (488)
T KOG3895|consen   14 MANLPNGYM----------TDLQR-PDPSASSPASPAMERRHPA-----LPAPFSSPGSSFFSSLSSAVKQTQATAGLME   77 (488)
T ss_pred             hhcCCcccc----------ccccC-CCCCCCCCCCcccccCCcc-----ccCCCCCCCccccccchHHHHHHHHHhhccc
Confidence            899999999          59999 8889999999999999754     335556678888877763    22      1


Q ss_pred             ccccccCcCcceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeee-eeeecc
Q psy10837         95 AARASYNKDRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV-RSFKPD  173 (316)
Q Consensus        95 ~~~p~~~~~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvv-RsfkPD  173 (316)
                      +..+.+..++.|+||||||+|+||+|||||||+||||+||||||||+||||+||+++||+|||+|.|||+|++ |+|+||
T Consensus        78 ~~~~~p~~~rakVLLVID~~H~DWsKyFrgkkvhgey~IrVEQaefseLnl~a~~~g~~~vdm~V~rNg~kvv~RsfkPd  157 (488)
T KOG3895|consen   78 PPGPTPIAKRAKVLLVIDEPHTDWSKYFRGKKVHGEYDIRVEQAEFSELNLVAHAKGGCMVDMQVLRNGTKVVVRSFKPD  157 (488)
T ss_pred             CCCCCcccccceEEEEecCCcccHHHHhcCCccccceEEEeeecccchheeeeeccCceeEEEEEEecCcceeeeeccCC
Confidence            2344666778999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             EEEEecccc--ccCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHHHHhCCCcccceeeeecCCC
Q psy10837        174 MILIRQNLR--DAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF  251 (316)
Q Consensus       174 FVLiRq~a~--~~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~k~lG~e~FPLI~Qt~ypn~  251 (316)
                      ||||||||.  ..+||||+|++||+|||||++|||+|+||||      ||||||+||++|.++||+|+||||||||||||
T Consensus       158 fVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~SvynFc------dkpwvf~Qlvki~~slG~e~fPli~qt~yPnH  231 (488)
T KOG3895|consen  158 FVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFC------DKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH  231 (488)
T ss_pred             EEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHHhc------cchHHHHHHHHHHHhcCccccccceeeecCCc
Confidence            999999995  5899999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             cccccccCCCCCcEEEeeccccccCcc----------chhhhhhhcceeeeecccccccceeeeeccccccccC
Q psy10837        252 KEMVSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF  315 (316)
Q Consensus       252 ~~m~~k~~~~~fPvVVKvGhaH~G~GK----------Diasvva~~~tY~TtEPfId~kYDIriQKIG~~YKay  315 (316)
                      |+|   ++.++||||||+||||+||||          ||+|||||++||+|+|||||+||||||||||+|||||
T Consensus       232 K~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDaKYDiriQKIG~nYKay  302 (488)
T KOG3895|consen  232 KEM---LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDAKYDIRIQKIGHNYKAY  302 (488)
T ss_pred             hhh---ccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHHhhhhhccccccccceeehhhhhhhHHHH
Confidence            999   899999999999999999999          9999999999999999999999999999999999998

>PF02078 Synapsin: Synapsin, N-terminal domain; InterPro: IPR020897 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1aux_A311 Structure Of The C Domain Of Synapsin Ia From Bovin 2e-64
1pk8_A422 Crystal Structure Of Rat Synapsin I C Domain Comple 2e-64
1i7l_A309 Crystal Structure Analysis Of The Complex Of The C 2e-63
2p0a_A 344 The Crystal Structure Of Human Synapsin Iii (Syn3) 1e-62
1auv_A311 Structure Of The C Domain Of Synapsin Ia From Bovin 6e-62
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain With Calcium Atp-Gamma-S Bound Length = 311 Back     alignment and structure 
Iteration: 1

 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/220 (53%), Positives = 155/220 (70%), Gaps = 21/220 (9%)
Query: 108 LLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVV 167
           LLVID+ +TDW+KYF+G+++HG+ D++VEQAEF +L+L A+ + G  V M V R G KVV
Sbjct: 7   LLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV 66
Query: 168 RSFKPDMILIRQNLRDAGE--DHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVF 225
           RS KPD +LIRQ+        D+++L++G    GIPSIN+L  VYNF       DKPWVF
Sbjct: 67  RSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSINSLHSVYNF------CDKPWVF 120
Query: 226 AHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK------- 278
           A +++L +KLG E FPLI+ T+YPN KEM+S  T   YPVV K+GHAHSG GK       
Sbjct: 121 AQMVRLHKKLGTEEFPLINQTFYPNHKEMLSSTT---YPVVVKMGHAHSGMGKVKVDNQH 177
Query: 279 ---DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
              D+A VVA+  TY TTEP+ID+K+DV +QKIG NYKA+
Sbjct: 178 DFQDIASVVALTKTYATTEPFIDAKYDVRIQKIGQNYKAY 217
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To Ca.Atp Length = 422 Back     alignment and structure
>pdb|1I7L|A Chain A, Crystal Structure Analysis Of The Complex Of The C Domain Of Synapsin Ii From Rat With Atp Length = 309 Back     alignment and structure
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In Complex With Amppnp Length = 344 Back     alignment and structure
>pdb|1AUV|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 4e-75
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 1e-72
2p0a_A 344 Synapsin-3, synapsin III; neurotransmitter release 1e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Length = 309 Back     alignment and structure
 Score =  231 bits (591), Expect = 4e-75
 Identities = 116/224 (51%), Positives = 155/224 (69%), Gaps = 21/224 (9%)

Query: 104 RCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGG 163
           +   LLV+D+ +TDW+K FRG+++ GDYD++VEQAEF EL+L A+ D    V M V R G
Sbjct: 1   KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNG 60

Query: 164 TKVVRSFKPDMILIRQN--LRDAGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDK 221
           TKVVRSF+PD +LIRQ+       ED ++L++G    G+PSIN+L+ +YNF       DK
Sbjct: 61  TKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFC------DK 114

Query: 222 PWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK--- 278
           PWVFA ++ + + LG E FPLI+ TYYPN +EM   +T P +PVV KIGHAHSG GK   
Sbjct: 115 PWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREM---LTLPTFPVVVKIGHAHSGMGKVKV 171

Query: 279 -------DMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 315
                  D+A VVA+  TY T EP+ID+K+D+ VQKIG+NYKA+
Sbjct: 172 ENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAY 215
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Length = 344 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 100.0
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 100.0
2p0a_A 344 Synapsin-3, synapsin III; neurotransmitter release 100.0
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 97.98
1z2n_X 324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 97.86
1iow_A 306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 97.65
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 97.55
1e4e_A 343 Vancomycin/teicoplanin A-type resistance protein; 97.5
4eg0_A 317 D-alanine--D-alanine ligase; structural genomics, 97.48
2fb9_A 322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 97.42
3se7_A 346 VANA; alpha-beta structure, D-alanine-D-lactate li 97.41
3r5x_A 307 D-alanine--D-alanine ligase; alpha-beta structure, 97.31
2i87_A 364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 97.22
1ehi_A 377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 97.17
3i12_A 364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 96.92
3ax6_A 380 Phosphoribosylaminoimidazole carboxylase, ATPase; 96.84
2pvp_A 367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 96.76
3lwb_A 373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 96.61
2vpq_A 451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 96.51
3tqt_A 372 D-alanine--D-alanine ligase; cell envelope; 1.88A 96.48
3ouz_A 446 Biotin carboxylase; structural genomics, center fo 96.31
2q7d_A 346 Inositol-tetrakisphosphate 1-kinase; inositol kina 96.29
3e5n_A 386 D-alanine-D-alanine ligase A; bacterial blight; 2. 96.27
2ip4_A 417 PURD, phosphoribosylamine--glycine ligase; GAR syn 96.24
2dzd_A 461 Pyruvate carboxylase; biotin carboxylase, ligase; 95.99
2xcl_A 422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 95.93
1ulz_A 451 Pyruvate carboxylase N-terminal domain; biotin car 95.84
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 95.82
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 95.76
2yw2_A 424 Phosphoribosylamine--glycine ligase; glycinamide r 95.73
1kjq_A 391 GART 2, phosphoribosylglycinamide formyltransferas 95.73
2yrx_A 451 Phosphoribosylglycinamide synthetase; glycinamide 95.67
4fu0_A 357 D-alanine--D-alanine ligase 7; vancomycin resistan 95.56
2dwc_A 433 PH0318, 433AA long hypothetical phosphoribosylglyc 95.53
3k3p_A 383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 95.52
2qk4_A 452 Trifunctional purine biosynthetic protein adenosi; 95.46
4dim_A 403 Phosphoribosylglycinamide synthetase; structural g 95.24
2w70_A 449 Biotin carboxylase; ligase, ATP-binding, fatty aci 95.24
3lp8_A 442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 95.19
2r85_A 334 PURP protein PF1517; ATP-grAsp superfamily, unknow 95.18
3k5i_A 403 Phosphoribosyl-aminoimidazole carboxylase; purine 95.15
3aw8_A 369 PURK, phosphoribosylaminoimidazole carboxylase, AT 94.85
3mjf_A 431 Phosphoribosylamine--glycine ligase; structural ge 94.81
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 94.7
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 94.56
3orq_A 377 N5-carboxyaminoimidazole ribonucleotide synthetas; 94.45
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 94.34
3df7_A 305 Putative ATP-grAsp superfamily protein; putative p 94.24
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 94.17
2z04_A 365 Phosphoribosylaminoimidazole carboxylase ATPase su 93.97
3vmm_A 474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 93.93
3q2o_A 389 Phosphoribosylaminoimidazole carboxylase, ATPase; 93.91
1vkz_A 412 Phosphoribosylamine--glycine ligase; TM1250, struc 93.15
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 92.9
3vot_A 425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 92.86
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 92.47
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 92.21
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 91.82
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 91.63
4e4t_A 419 Phosphoribosylaminoimidazole carboxylase, ATPase; 91.43
4ffl_A 363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 90.77
2pn1_A 331 Carbamoylphosphate synthase large subunit; ZP_0053 89.84
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 89.22
3eth_A 355 Phosphoribosylaminoimidazole carboxylase ATPase su 89.21
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 88.12
3t7a_A 330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 86.68
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-64  Score=493.52  Aligned_cols=271  Identities=46%  Similarity=0.829  Sum_probs=191.9

Q ss_pred             CCCCCCCCCCCCCCCCCcccccccCCCCCC-----------CCCCCccccchhhhhhcccc--ccccccccchhhhhhhh
Q psy10837         25 APPLPARTAGGPPSSGDLSLNLSKQSSRTT-----------SAPTSPAKTRESLLQRVQSL--TGQARDQGASIIGAMTQ   91 (316)
Q Consensus        25 ~~~lp~~~~~~~~~~~~~sl~l~~~~~~~t-----------SaPtSPA~~r~s~~q~~~~~--t~~~~~~gss~~ss~~~   91 (316)
                      ++|||||||          +|||| ++.++           ++|+|||++|++..++.+|-  ..+.+++|++|||++++
T Consensus        15 ~~~lp~gy~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   83 (422)
T 1pk8_A           15 MANLPNGYM----------TDLQR-PQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN   83 (422)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcCCcccc----------cccCC-CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCccccCCCCCCCCCcchhhHHHH
Confidence            899999999          68888 65444           44589999999764332221  11234467788888874


Q ss_pred             ----cc--c--------ccccccCc---CcceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCee
Q psy10837         92 ----TA--S--------AARASYNK---DRCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCV  154 (316)
Q Consensus        92 ----ta--~--------~~~p~~~~---~~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~  154 (316)
                          |+  +        .+.|...+   +++|+||||||+|+||+|||||||+||+|+||||||||+||+|+++++++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LLVid~~~~dw~K~f~~~~~~g~y~i~veqa~~~~i~l~~~~~~~~~  163 (422)
T 1pk8_A           84 AVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFS  163 (422)
T ss_dssp             -----------------------------CCEEEEEECCTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEE
T ss_pred             HHHHHHHHhhcccccccCCCccccccccccceEEEEeccccchHHHHhcccccccchhhHHHHHhhcCceEEEEcCCcee
Confidence                33  1        11122333   2699999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCeeeeeeeeccEEEEeccccc--cCCCchhhhhhhhcCCCCCCCchhhHhhhccCcccCCchhHHHHHHHHH
Q psy10837        155 VSMAVFRGGTKVVRSFKPDMILIRQNLRD--AGEDHKNLLLGFNIGGIPSINTLQGVYNFQVPKLVLDKPWVFAHLLQLQ  232 (316)
Q Consensus       155 Vd~~v~r~G~kvvRsfkPDFVLiRq~a~~--~~~D~rniliGl~y~GIPsvNSL~Siynf~~~~~~lDKpWvfs~L~~i~  232 (316)
                      |+++++|+|.+++|.++||+||+|..+..  ..++||+++.+|...|||++|++++|+++.      ||+|+|.+++++.
T Consensus       164 v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr~lE~~GvpviNs~~sI~~~~------DK~~vf~~~l~ll  237 (422)
T 1pk8_A          164 VDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFC------DKPWVFAQMVRLH  237 (422)
T ss_dssp             EEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEESCHHHHHHTS------SHHHHHHHHHHHH
T ss_pred             EEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHHHHHHCCccccCCHHHHHHhC------CccHHHHHHHHHH
Confidence            99999999999999999999999999975  778999999999999999999999999999      9999999999999


Q ss_pred             HHhCCCcccceeeeecCCCcccccccCCCCCcEEEeeccccccCcc----------chhhhhhhcceeeeecccccccce
Q psy10837        233 RKLGKENFPLIDITYYPNFKEMVSKMTAPKYPVVFKIGHAHSGFGK----------DMAGVVAVANTYCTTEPYIDSKFD  302 (316)
Q Consensus       233 k~lG~e~FPLI~Qt~ypn~~~m~~k~~~~~fPvVVKvGhaH~G~GK----------Diasvva~~~tY~TtEPfId~kYD  302 (316)
                      +++|.++||++++++++++.++   +....||+|||+.++|.|.|.          ++...+...+.|+.+|+||+.+||
T Consensus       238 ~~~gi~~iP~t~~t~~~~~~~~---i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~~g~D  314 (422)
T 1pk8_A          238 KKLGTEEFPLIDQTFYPNHKEM---LSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYD  314 (422)
T ss_dssp             HHHCTTTSCBCCCEEESSGGGC---CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCCEEEE
T ss_pred             HhCCCCCCCCCceEecCchhhh---hhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecCCCce
Confidence            9999999999999999999998   666789999999999999999          344444456899999999999999


Q ss_pred             eeeeccccccccC
Q psy10837        303 VHVQKIGSNYKAF  315 (316)
Q Consensus       303 IriQKIG~~YKay  315 (316)
                      |||+.||++|.+|
T Consensus       315 IRv~VVGg~vva~  327 (422)
T 1pk8_A          315 VRVQKIGQNYKAY  327 (422)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEEECCEEEEE
Confidence            9999999999876
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1i7na1102 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norv 2e-54
d1i7na2206 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor 1e-15
>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: Synapsin domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  170 bits (433), Expect = 2e-54
 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 104 RCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGG 163
           +   LLV+D+ +TDW+K FRG+++ GDYD++VEQAEF EL+L A+ D    V M V R G
Sbjct: 1   KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNG 60

Query: 164 TKVVRSFKPDMILIRQNLR--DAGEDHKNLLLGFNIGGIPSI 203
           TKVVRSF+PD +LIRQ+       ED ++L++G    G+PSI
Sbjct: 61  TKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI 102
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1i7na1102 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 100.0
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.73
d1e4ea2 211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 90.76
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 89.96
d1iowa2 210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 88.99
d1a9xa5 275 Carbamoyl phosphate synthetase (CPS), large subuni 84.64
d1a9xa6 259 Carbamoyl phosphate synthetase (CPS), large subuni 82.87
d1ulza3 214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 82.76
>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: Synapsin domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-56  Score=362.68  Aligned_cols=100  Identities=52%  Similarity=0.918  Sum_probs=97.9

Q ss_pred             cceEEEEEcCCCcchhhhccccccccceeeEEeeeeeceeEEEEecCCCeeEEEEEeeCCeeeeeeeeccEEEEecccc-
Q psy10837        104 RCFSLLVIDDQNTDWSKYFRGRRLHGDYDVRVEQAEFKELSLTANGDLGCVVSMAVFRGGTKVVRSFKPDMILIRQNLR-  182 (316)
Q Consensus       104 ~~k~LLVIDd~~tDW~KyFrgkkv~G~~~irVEQaeF~ei~l~a~~~~g~~Vd~~v~r~G~kvvRsfkPDFVLiRq~a~-  182 (316)
                      |+|+||||||+||||+|||||||+||||+||||||||+||||+||+++||+|||+++|+|+|++|||||||||||||++ 
T Consensus         1 k~K~LLVIDd~~tDW~KyFrgkki~g~ydIrVEQAeFseinl~a~s~~g~~Vd~~v~r~gtkvvRsFkPDFvLvRQh~~s   80 (102)
T d1i7na1           1 KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFG   80 (102)
T ss_dssp             CEEEEEEECCTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCC
T ss_pred             CceEEEEEcCCCCcHHHHhCCCccCCcEEEEEEEecceeEEEEEEcCCCeEEEEEeecCCceeeeecCCCEEEEeccccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             -ccCCCchhhhhhhhcCCCCCC
Q psy10837        183 -DAGEDHKNLLLGFNIGGIPSI  203 (316)
Q Consensus       183 -~~~~D~rniliGl~y~GIPsv  203 (316)
                       +++|||||+++||+||||||+
T Consensus        81 m~~~~D~Rnl~iGL~ygGvPSi  102 (102)
T d1i7na1          81 MAENEDFRHLVIGMQYAGLPSI  102 (102)
T ss_dssp             SSTTCCCHHHHHHHHHTTCCEE
T ss_pred             ccccccHHHHHhhhhhcCccCC
Confidence             589999999999999999986
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure